Pregenerated sensors for CRY1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020038Ensembl transcript IDs: ENSMUST00000020227.11, ENSMUST00000214675.2
Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATTAAATGAAAAGTACTaGCTTTCCCACCAACTTCAG | + |
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Preference number: 2 (lower is better) Translates to: HCASQEAVTQMALADRGLLNEKY*LSHQLQ Trigger: CTGAAGTTGGTGGGAAAGTCAGTACTTTTCATTTAA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| 3UTR GCA 72 bp | AGAGGCGGAGAGACAAAGGAGCTCGGCACAATGCACTaGGCAAGTCAGGAGGCTGTAACACAGATGGCCCTC | + |
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Preference number: 3 (lower is better) Translates to: RGGETKELGTMH*ASQEAVTQMAL Trigger: GAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTGCATTGTGCCGAGCTCCTTTGTCTCTCCGCCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| 3UTR TCA 72 bp | ACACAGATGGCCCTCGCTGACAGAGGCCTATGCACTTaGTTACATGTATTCTCTAAAGCATTATTATCAAAG | + |
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Preference number: 3 (lower is better) Translates to: TQMALADRGLCT*LHVFSKALLSK Trigger: CTTTGATAATAATGCTTTAGAGAATACATGTAATCAAGTGCATAGGCCTCTGTCAGCGAGGGCCATCTGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAAGGGCGGGGTTGTCGTaGAGCCGGAGTCCCTTTCGG | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLRAGLS*SRSPFR Trigger: CCGAAAGGGACTCCGGCTCCACGACAACCCCGCCCT...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAGCCTGTCCGGCCTTCTaGCCATTTGGCCAGAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLACPAF*PFGQSL Trigger: GAGGCTCTGGCCAAATGGGCAGAAGGCCGGACAGGC...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAATGGTGTCGGCGCCCTaGATGCACTCCTTCAGGGCG | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLMVSAP*MHSFRA Trigger: CGCCCTGAAGGAGTGCATCCAGGGCGCCGACACCAT...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATATAGACGCAGCGGATaGTGTCGGCGCCCTGGATGC | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLYRRSG*CRRPGC Trigger: GCATCCAGGGCGCCGACACCATCCGCTGCGTCTATA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAGGCCTTCTGCCCATTTaGCCAGAGCCTCGGGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLGLLPI*PEPRGS Trigger: AGAACCCCGAGGCTCTGGCCAAATGGGCAGAAGGCC...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAGTGAAATGCGCACGATaGCTTCCACGCCAGCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLVKCAR*LPRQPQ Trigger: CTGAGGCTGGCGTGGAAGTCATCGTGCGCATTTCAC...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATGGGCATCCTCTTCCTaGCTAGGACGCTTCCCACTG | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLWASSS*LGRFPL Trigger: CAGTGGGAAGCGTCCTAGTCAGGAAGAGGATGCCCA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTTGTCGGCGCCCTGGATaGACTCCTTCAGGGCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRCRRPG*TPSGRG Trigger: ACCCCGCCCTGAAGGAGTGCATCCAGGGCGCCGACA...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATGCTGGCATCTCCAGTaGCTCCATCTTGCTGACGAG | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLCWHLQ*LHLADE Trigger: CTCGTCAGCAAGATGGAGCCACTGGAGATGCCAGCA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAAAAATCGCCACCTGTTaGTGCCCACGTTGGAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLKIATC*CPRWKS Trigger: GCTCTTCCAACGTGGGCATCAACAGGTGGCGATTTT...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAAGCGGAGATAAGGACTaGGTCCAGTTGGGCTTGCAA | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLSGDKD*VQLGLQ Trigger: TTGCAAGCCCAACTGGACTCAGTCCTTATCTCCGCT...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATGTGATGGTGTCTGCTaGCATCTCCAGTGGCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLCDGVC*HLQWLH Trigger: ATGGAGCCACTGGAGATGCCAGCAGACACCATCACA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAAGGACTGAGTCCAGTTaGGCTTGCAAGCAGGGAGTT | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLRTESS*ACKQGV Trigger: AACTCCCTGCTTGCAAGCCCAACTGGACTCAGTCCT...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTTCCCTTCTTCCCAGCTaGTCCACAGGTCACCACGAG | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRSLLPS*STGHHE Trigger: CTCGTGGTGACCTGTGGATCAGCTGGGAAGAAGGGA...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATGGCAACCTTCTGGATaGCTTCTGGTGCATTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLWQPSG*LLVHSK Trigger: CTTGGAATGCACCAGAAGGCATCCAGAAGGTTGCCA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATGCAAGCAGGGAGTTTaGATTCATTCGAGGTCGTTC | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLCKQGV*IHSRSF Trigger: GAACGACCTCGAATGAATGCAAACTCCCTGCTTGCA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTACTTCTGGATGCCTTCTaGTGCATTCCAAGGATCGTA | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLLLDAF*CIPRIV Trigger: TACGATCCTTGGAATGCACCAGAAGGCATCCAGAAG...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTCTGCTTGCCTCAGCATaGTTCACCATCGGTTTGGGG | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRLLASA*FTIGLG Trigger: CCCCAAACCGATGGTGAACCATGCTGAGGCAAGCAG...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAGTCATACAGTGTATGTaGAATGCGCACGATGACTTC | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLVIQCM*NAHDDF Trigger: GAAGTCATCGTGCGCATTTCACATACACTGTATGAC...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTTTGTCCCAAGGGATCTaGACACAGATGGGGTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRLSQGI*TQMGFP Trigger: AGGGAACCCCATCTGTGTTCAGATCCCTTGGGACAA...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTAGCTTCTCCCTTGCTTaGGTGAGTGAGTCTGCTGAC | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRSFSLA*VSESAD Trigger: GTCAGCAGACTCACTCACTCAAGCAAGGGAGAAGCT...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAAAAATACCACTTCCTTaGGAGCAATTTCCACCGCTA | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLKIPLP*EQFPPL Trigger: TAGCGGTGGAAATTGCTCTCAAGGAAGTGGTATTTT...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTGAGTCCAGTTGGGCTTaGAAGCAGGGAGTTTGCATT | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRESSWA*KQGVCI Trigger: AATGCAAACTCCCTGCTTGCAAGCCCAACTGGACTC...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTCACTTGGCAACCTTCTaGATGCCTTCTGGTGCATTC | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRHLATF*MPSGAF Trigger: GAATGCACCAGAAGGCATCCAGAAGGTTGCCAAGTG...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTAGATCCTCAAGACACTaGAGCAAAAATCGCCACCTG | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRRSSRH*SKNRHL Trigger: CAGGTGGCGATTTTTGCTTCAGTGTCTTGAGGATCT...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTCTTTCCTATCACATCTaGTGTGATGGTGTCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRLSYHI*CDGVCW Trigger: CCAGCAGACACCATCACATCAGATGTGATAGGAAAG...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTCAGACAGAGGGGTCATaGACTTTCCTATCACATCTG | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRQTEGS*TFLSHL Trigger: CAGATGTGATAGGAAAGTGCATGACCCCTCTGTCTG...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTTTCCAAACGTGTAAGTaGCTCAGTTTCTCCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRFQTCK*LSFSSW Trigger: CCAGGAGGAGAAACTGAGGCACTTACACGTTTGGAA...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTAGGTCGTTCAAAGTTTaGCACCCAGGCCTTTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRRSFKV*HPGLSF Trigger: GAAAGAAAGGCCTGGGTGGCAAACTTTGAACGACCT...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTGGGAAATACATCAGCTaGCTGTCCCCGAATCACAAA | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRGKYIS*LSPNHK Trigger: TTTGTGATTCGGGGACAGCCAGCTGATGTATTTCCC...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTCAGCTTCTTGATAGCTaGATCTCGTTCCTTCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRQLLDS*ISFLPK Trigger: TTTGGGAAGGAACGAGATGCAGCTATCAAGAAGCTG...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTCCATATTTCTCATCATaGTCATCAGACAGAGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRPYFSS*SSDRGV Trigger: GACCCCTCTGTCTGATGACCATGATGAGAAATATGG...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTAATATTCAGTCTGCTTaGCTCAGCATGGTTCACCAT | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRNIQSA*LSMVHH Trigger: ATGGTGAACCATGCTGAGGCAAGCAGACTGAATATT...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CCA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATTAATTTTCGTAGATTaGCATCAAGATCCTCAAGAC | + |
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Preference number: 4 (lower is better) Translates to: HCASQEAVTQMALADRGLLIFVD*HQDPQD Trigger: GTCTTGAGGATCTTGATGCCAATCTACGAAAATTAA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR GCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTTTTCAATATTCAGTCTaGTTGCCTCAGCATGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRFQYSV*LPQHGS Trigger: TGAACCATGCTGAGGCAAGCAGACTGAATATTGAAA...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR TCA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTAGAGATCTGTTAGTTTaGAATAAAACAGCCGACATG | + |
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Preference number: 4 (lower is better) Translates to: VLTFPPTSVARTPPTRFRRDLLV*NKTADM Trigger: CATGTCGGCTGTTTTATTTCAAACTAACAGATCTCT...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 90 bp | CTCTGCCGCTGGACTTTGGGGCCGACACTCTGGGCATCCTCTTCCTaGCTAGGACGCTTCCCACTGCTGAGGCCGGTGCCCGCGGAGCTT | + |
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Preference number: 5 (lower is better) Translates to: LCRWTLGPTLWASSS*LGRFPLLRPVPAEL Trigger: AAGCTCCGCGGGCACCGGCCTCAGCAGTGGGAAGCGTCCTAGTCAGGAAGAGGATGCCCAGAGTGTCGGCCCCAAAGTCCAGCGGCAGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS GCA 90 bp | AGGGGTCGAGGATATAGACGCAGCGGATGGTGTCGGCGCCCTGGATaGACTCCTTCAGGGCGGGGTTGTCGTGGAGCCGGAGTCCCTTTC | + |
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Preference number: 5 (lower is better) Translates to: RGRGYRRSGWCRRPG*TPSGRGCRGAGVPF Trigger: GAAAGGGACTCCGGCTCCACGACAACCCCGCCCTGAAGGAGTGCATCCAGGGCGCCGACACCATCCGCTGCGTCTATATCCTCGACCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 90 bp | TGGAAGAGCCGGCGAACCAGGGGTCGAGGATATAGACGCAGCGGATaGTGTCGGCGCCCTGGATGCACTCCTTCAGGGCGGGGTTGTCGT | + |
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Preference number: 5 (lower is better) Translates to: WKSRRTRGRGYRRSG*CRRPGCTPSGRGCR Trigger: ACGACAACCCCGCCCTGAAGGAGTGCATCCAGGGCGCCGACACCATCCGCTGCGTCTATATCCTCGACCCCTGGTTCGCCGGCTCTTCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATCCTTCAGGGCGGGGTaGTCGTGGAGCCGGAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: HCASQEAVTQMALADRGLSFRAG*SWSRSP Trigger: GGGACTCCGGCTCCACGACAACCCCGCCCTGAAGGA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTACGGCCTTCTGCCCATTaGGCCAGAGCCTCGGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: HCASQEAVTQMALADRGLRPSAH*ARASGF Trigger: GAACCCCGAGGCTCTGGCCAAATGGGCAGAAGGCCG...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTACTGTTGATGCCCACGTaGGAAGAGCCGGCGAACCAG | + |
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Preference number: 5 (lower is better) Translates to: HCASQEAVTQMALADRGLLLMPT*EEPANQ Trigger: CTGGTTCGCCGGCTCTTCCAACGTGGGCATCAACAG...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATTCACGCCACAGGAGTaGCCCATAAAGAGAAAGGGG | + |
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Preference number: 5 (lower is better) Translates to: HCASQEAVTQMALADRGLFTPQE*PIKRKG Trigger: CCCCTTTCTCTTTATGGGCAACTCCTGTGGCGTGAA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAGAGGTCGTTCAAAGTTaGCCACCCAGGCCTTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: HCASQEAVTQMALADRGLEVVQS*PPRPFF Trigger: AAAGAAAGGCCTGGGTGGCAAACTTTGAACGACCTC...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 90 bp | TGGCCAGAGCCTCGGGGTTCTTGTCCCAAGGGATCTGAACACAGATaGGGTTCCCTTCCATTTTGTCAAAGCGTGGGTTGTTTGTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: WPEPRGSCPKGSEHR*GSLPFCQSVGCLWL Trigger: CAGCCACAAACAACCCACGCTTTGACAAAATGGAAGGGAACCCCATCTGTGTTCAGATCCCTTGGGACAAGAACCCCGAGGCTCTGGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTATTGCAAGCAGGGAGTTaGCATTCATTCGAGGTCGTT | + |
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Preference number: 5 (lower is better) Translates to: HCASQEAVTQMALADRGLLQAGS*HSFEVV Trigger: AACGACCTCGAATGAATGCAAACTCCCTGCTTGCAA...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | CACTGCGCAAGTCAGGAGGCTGTAACACAGATGGCCCTCGCTGACAGAGGCCTAACTCCTATCAAACACTaGGCAACCTTCTGGATGCCT | + |
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Preference number: 5 (lower is better) Translates to: HCASQEAVTQMALADRGLTPIKH*ATFWMP Trigger: AGGCATCCAGAAGGTTGCCAAGTGTTTGATAGGAGT...TAGGCCTCTGTCAGCGAGGGCCATCTGTGTTACAGCCTCCTGACTTGCGCAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 90 bp | CATCAAGCAGTAACTCTTCAAAGACCTTCATCCCTTCTTCCCAGCTaGTCCACAGGTCACCACGAGTCAGGAAACAGGCAACCGCGTGTC | + |
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Preference number: 5 (lower is better) Translates to: HQAVTLQRPSSLLPS*STGHHESGNRQPRV Trigger: GACACGCGGTTGCCTGTTTCCTGACTCGTGGTGACCTGTGGATCAGCTGGGAAGAAGGGATGAAGGTCTTTGAAGAGTTACTGCTTGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS GCA 90 bp | GCGGAGATAAGGACTGAGTCCAGTTGGGCTTGCAAGCAGGGAGTTTaGATTCATTCGAGGTCGTTCAAAGTTTGCCACCCAGGCCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: AEIRTESSWACKQGV*IHSRSFKVCHPGLS Trigger: AGAAAGGCCTGGGTGGCAAACTTTGAACGACCTCGAATGAATGCAAACTCCCTGCTTGCAAGCCCAACTGGACTCAGTCCTTATCTCCGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 90 bp | TTCCAAATGCCTTTCCAAACGTGTAAGTGCCTCAGTTTCTCCTCCTaGCCACACTGCAGAGGACAGGCCATCTGTATCAAAGCCGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: FQMPFQTCKCLSFSS*PHCRGQAICIKAEL Trigger: GAGCTCGGCTTTGATACAGATGGCCTGTCCTCTGCAGTGTGGCCAGGAGGAGAAACTGAGGCACTTACACGTTTGGAAAGGCATTTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTGGGTTCCCTTCCATTTaGTCAAAGCGTGGGTTGTTT | + |
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Preference number: 5 (lower is better) Translates to: VLTFPPTSVARTPPTRFRGFPSI*SKRGLF Trigger: AAACAACCCACGCTTTGACAAAATGGAAGGGAACCC...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTCAATATTCAGTCTGCTaGCCTCAGCATGGTTCACCA | + |
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Preference number: 5 (lower is better) Translates to: VLTFPPTSVARTPPTRFRQYSVC*PQHGSP Trigger: TGGTGAACCATGCTGAGGCAAGCAGACTGAATATTG...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 90 bp | TCCGCCATTGAGTTCTATGATCTTGTCCAGGTCATACAGTGTATGTaGAATGCGCACGATGACTTCCACGCCAGCCTCAGTAGCCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: SAIEFYDLVQVIQCM*NAHDDFHASLSSQL Trigger: AAGCTGGCTACTGAGGCTGGCGTGGAAGTCATCGTGCGCATTTCACATACACTGTATGACCTGGACAAGATCATAGAACTCAATGGCGGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 90 bp | GTGTCTGCTGGCATCTCCAGTGGCTCCATCTTGCTGACGAGAGTCTaGAACCTTTTATATGTTAGAGGTGGCTGTCCGCCATTGAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: VSAGISSGSILLTRV*NLLYVRGGCPPLSS Trigger: AGAACTCAATGGCGGACAGCCACCTCTAACATATAAAAGGTTTCAGACTCTCGTCAGCAAGATGGAGCCACTGGAGATGCCAGCAGACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020227.11 ENSMUST00000214675.2 |
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| CDS TCA 90 bp | ATCATGGTCATCAGACAGAGGGGTCATGCACTTTCCTATCACATCTaGTGTGATGGTGTCTGCTGGCATCTCCAGTGGCTCCATCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: IMVIRQRGHALSYHI*CDGVCWHLQWLHLA Trigger: AGCAAGATGGAGCCACTGGAGATGCCAGCAGACACCATCACATCAGATGTGATAGGAAAGTGCATGACCCCTCTGTCTGATGACCATGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTGTGATGTTCCATTCCTaGAAAAGCCTGGGAAATACA | + |
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Preference number: 5 (lower is better) Translates to: VLTFPPTSVARTPPTRFRVMFHS*KSLGNT Trigger: TGTATTTCCCAGGCTTTTCAAGGAATGGAACATCAC...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS-3UTR CAA 90 bp | GTACTGACTTTCCCACCAACTTCAGTTGCGAGGACTCCTCCCACACGCTTTCGTGATCGTAGATATATTTaGCAGGGAAGCCTCTTAGGA | + |
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Preference number: 5 (lower is better) Translates to: VLTFPPTSVARTPPTRFRDRRYI*QGSLLG Trigger: TCCTAAGAGGCTTCCCTGCAAAATATATCTACGATC...ACGAAAGCGTGTGGGAGGAGTCCTCGCAACTGAAGTTGGTGGGAAAGTCAGTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 90 bp | TCAAAGCCGAGCTCTTCCAGGGAAGGAACGCCATATTTCTCATCATaGTCATCAGACAGAGGGGTCATGCACTTTCCTATCACATCTGAT | + |
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Preference number: 5 (lower is better) Translates to: SKPSSSREGTPYFSS*SSDRGVMHFPITSD Trigger: ATCAGATGTGATAGGAAAGTGCATGACCCCTCTGTCTGATGACCATGATGAGAAATATGGCGTTCCTTCCCTGGAAGAGCTCGGCTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 90 bp | GTAATTAACTCCTATCAAACACTTGGCAACCTTCTGGATGCCTTCTaGTGCATTCCAAGGATCGTAGATATATTTTGCAGGGAAGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: VINSYQTLGNLLDAF*CIPRIVDIFCREAS Trigger: AGAGGCTTCCCTGCAAAATATATCTACGATCCTTGGAATGCACCAGAAGGCATCCAGAAGGTTGCCAAGTGTTTGATAGGAGTTAATTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 90 bp | AGCTGCATCTCGTTCCTTCCCAAAAGGCTCAGAATCATACTCAATTaGGAGTTTAGTGATGTTCCATTCCTTGAAAAGCCTGGGAAATAC | + |
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Preference number: 5 (lower is better) Translates to: SCISFLPKRLRIILN*EFSDVPFLEKPGKY Trigger: GTATTTCCCAGGCTTTTCAAGGAATGGAACATCACTAAACTCTCAATTGAGTATGATTCTGAGCCTTTTGGGAAGGAACGAGATGCAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 72 bp | CGGCGAACCAGGGGTCGAGGATATAGACGCAGCGGATaGTGTCGGCGCCCTGGATGCACTCCTTCAGGGCGG | + |
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Preference number: 6 (lower is better) Translates to: RRTRGRGYRRSG*CRRPGCTPSGR Trigger: CCGCCCTGAAGGAGTGCATCCAGGGCGCCGACACCATCCGCTGCGTCTATATCCTCGACCCCTGGTTCGCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS GCA 72 bp | GGATATAGACGCAGCGGATGGTGTCGGCGCCCTGGATaGACTCCTTCAGGGCGGGGTTGTCGTGGAGCCGGA | + |
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Preference number: 6 (lower is better) Translates to: GYRRSGWCRRPG*TPSGRGCRGAG Trigger: TCCGGCTCCACGACAACCCCGCCCTGAAGGAGTGCATCCAGGGCGCCGACACCATCCGCTGCGTCTATATCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 72 bp | TGGACTTTGGGGCCGACACTCTGGGCATCCTCTTCCTaGCTAGGACGCTTCCCACTGCTGAGGCCGGTGCCC | + |
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Preference number: 6 (lower is better) Translates to: WTLGPTLWASSS*LGRFPLLRPVP Trigger: GGGCACCGGCCTCAGCAGTGGGAAGCGTCCTAGTCAGGAAGAGGATGCCCAGAGTGTCGGCCCCAAAGTCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 72 bp | TACAGCTCGGGACGTTCTCTCCAGGAGCATAGCCCATaGGCCCTCCATTCCCGCTGCTGCTACAACTCGGGA | + |
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Preference number: 6 (lower is better) Translates to: YSSGRSLQEHSP*ALHSRCCYNSG Trigger: TCCCGAGTTGTAGCAGCAGCGGGAATGGAGGGCTCATGGGCTATGCTCCTGGAGAGAACGTCCCGAGCTGTA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 72 bp | CCTCGGGGTTCTTGTCCCAAGGGATCTGAACACAGATaGGGTTCCCTTCCATTTTGTCAAAGCGTGGGTTGT | + |
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Preference number: 6 (lower is better) Translates to: PRGSCPKGSEHR*GSLPFCQSVGC Trigger: ACAACCCACGCTTTGACAAAATGGAAGGGAACCCCATCTGTGTTCAGATCCCTTGGGACAAGAACCCCGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 72 bp | TGGCTGTCCGCCATTGAGTTCTATGATCAGTGTATGTaGAATGCGCACGATGACTTCCACGCCAGCCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: WLSAIEFYDQCM*NAHDDFHASLS Trigger: ACTGAGGCTGGCGTGGAAGTCATCGTGCGCATTTCACATACACTGATCATAGAACTCAATGGCGGACAGCCA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214675.2 |
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| CDS GCA 72 bp | AGGACTGAGTCCAGTTGGGCTTGCAAGCAGGGAGTTTaGATTCATTCGAGGTCGTTCAAAGTTTGCCACCCA | + |
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Preference number: 6 (lower is better) Translates to: RTESSWACKQGV*IHSRSFKVCHP Trigger: TGGGTGGCAAACTTTGAACGACCTCGAATGAATGCAAACTCCCTGCTTGCAAGCCCAACTGGACTCAGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 72 bp | GTAACTCTTCAAAGACCTTCATCCCTTCTTCCCAGCTaGTCCACAGGTCACCACGAGTCAGGAAACAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: VTLQRPSSLLPS*STGHHESGNRQ Trigger: TTGCCTGTTTCCTGACTCGTGGTGACCTGTGGATCAGCTGGGAAGAAGGGATGAAGGTCTTTGAAGAGTTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS GCA 72 bp | TTCCACGCCAGCCTCAGTAGCCAGCTTCTTGATAGCTaGATCTCGTTCCTTCCCAAAAGGCTCAGAATCATA | + |
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Preference number: 6 (lower is better) Translates to: FHASLSSQLLDS*ISFLPKRLRII Trigger: TATGATTCTGAGCCTTTTGGGAAGGAACGAGATGCAGCTATCAAGAAGCTGGCTACTGAGGCTGGCGTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 72 bp | GAGTTCTATGATCTTGTCCAGGTCATACAGTGTATGTaGAATGCGCACGATGACTTCCACGCCAGCCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: EFYDLVQVIQCM*NAHDDFHASLS Trigger: ACTGAGGCTGGCGTGGAAGTCATCGTGCGCATTTCACATACACTGTATGACCTGGACAAGATCATAGAACTC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 72 bp | TGGTGTCTGCTGGCATCTCCAGTGGCTCCATCTTGCTaGCGAGAGTCTGAAACCTTTTATATGTTAGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: WCLLASPVAPSC*RESETFYMLEV Trigger: CACCTCTAACATATAAAAGGTTTCAGACTCTCGTCAGCAAGATGGAGCCACTGGAGATGCCAGCAGACACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 72 bp | AGCTCTTCCAGGGAAGGAACGCCATATTTCTCATCATaGTCATCAGACAGAGGGGTCATGCACTTTCCTATC | + |
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Preference number: 6 (lower is better) Translates to: SSSREGTPYFSS*SSDRGVMHFPI Trigger: GATAGGAAAGTGCATGACCCCTCTGTCTGATGACCATGATGAGAAATATGGCGTTCCTTCCCTGGAAGAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CAA 72 bp | GTTAGAGGTGGCTGTCCGCCATTGAGTTCTATGATCTaGTCCAGGTCATACAGTGTATGTGAAATGCGCACG | + |
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Preference number: 6 (lower is better) Translates to: VRGGCPPLSSMI*SRSYSVCEMRT Trigger: CGTGCGCATTTCACATACACTGTATGACCTGGACAAGATCATAGAACTCAATGGCGGACAGCCACCTCTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS GCA 72 bp | CAGGGAGTTTGCATTCATTCGAGGTCGTTCAAAGTTTaGCACCCAGGCCTTTCTTTCCAAATGCCTTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: QGVCIHSRSFKV*HPGLSFQMPFQ Trigger: TTGGAAAGGCATTTGGAAAGAAAGGCCTGGGTGGCAAACTTTGAACGACCTCGAATGAATGCAAACTCCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CAA 72 bp | TGCCTTCTGGTGCATTCCAAGGATCGTAGATATATTTaGCAGGGAAGCCTCTTAGGACAGGTAAATAACGCC | + |
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Preference number: 6 (lower is better) Translates to: CLLVHSKDRRYI*QGSLLGQVNNA Trigger: GGCGTTATTTACCTGTCCTAAGAGGCTTCCCTGCAAAATATATCTACGATCCTTGGAATGCACCAGAAGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CAA 90 bp | CTTTTATATGTTAGAGGTGGCTGTCCGCCATTGAGTTCTATGATCTaGTCCAGGTCATACAGTGTATGTGAAATGCGCACGATGACTTCC | + |
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Preference number: 6 (lower is better) Translates to: LLYVRGGCPPLSSMI*SRSYSVCEMRTMTS Trigger: GGAAGTCATCGTGCGCATTTCACATACACTGTATGACCTGGACAAGATCATAGAACTCAATGGCGGACAGCCACCTCTAACATATAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS TCA 72 bp | AATTTTCGTAGATTGGCATCAAGATCCTCAAGACACTaGAGCAAAAATCGCCACCTGTTGATGCCCACGTTG | + |
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Preference number: 6 (lower is better) Translates to: NFRRLASRSSRH*SKNRHLLMPTL Trigger: CAACGTGGGCATCAACAGGTGGCGATTTTTGCTTCAGTGTCTTGAGGATCTTGATGCCAATCTACGAAAATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 72 bp | TCCTATCAAACACTTGGCAACCTTCTGGATGCCTTCTaGTGCATTCCAAGGATCGTAGATATATTTTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SYQTLGNLLDAF*CIPRIVDIFCR Trigger: CCTGCAAAATATATCTACGATCCTTGGAATGCACCAGAAGGCATCCAGAAGGTTGCCAAGTGTTTGATAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS GCA 72 bp | TATCAAACACTTGGCAACCTTCTGGATGCCTTCTGGTaGATTCCAAGGATCGTAGATATATTTTGCAGGGAA | + |
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Preference number: 6 (lower is better) Translates to: YQTLGNLLDAFW*IPRIVDIFCRE Trigger: TTCCCTGCAAAATATATCTACGATCCTTGGAATGCACCAGAAGGCATCCAGAAGGTTGCCAAGTGTTTGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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| CDS CCA 72 bp | GAATCACAAACAGACGAGAATTTAATTTTCGTAGATTaGCATCAAGATCCTCAAGACACTGAAGCAAAAATC | + |
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Preference number: 6 (lower is better) Translates to: ESQTDENLIFVD*HQDPQDTEAKI Trigger: GATTTTTGCTTCAGTGTCTTGAGGATCTTGATGCCAATCTACGAAAATTAAATTCTCGTCTGTTTGTGATTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020227.11 |
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