RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CRTC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030527

Ensembl transcript IDs: ENSMUST00000122255.8, ENSMUST00000127326.2, ENSMUST00000149176.2

Found 252 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAGCAGAGACTGGGGCACGTGGCCGCACAGCTCCACCCGGCTGTCTaGAGAGCCGCGGTGTGGGGAGCTGGAGCAGCCTCTGATTCCCAG +
Preference number: 1 (lower is better)
Translates to: QQRLGHVAAQLHPAV*RAAVWGAGAASDSQ
Trigger: CTGGGAATCAGAGGCTGCTCCAGCTCCCCACACCGCGGCTCTTCAGACAGCCGGGTGGAGCTGTGCGGCCACGTGCCCCAGTCTCTGCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp TTGAGGTCTGCAGGGCAGCTGGGGAGAAGGGCAGTTCAGCTGCCCTaGACTAATACGAGTCCCAGCAGCTCCTTCCAGTGGGCTGGAGGG +
Preference number: 1 (lower is better)
Translates to: LRSAGQLGRRAVQLP*TNTSPSSSFQWAGG
Trigger: CCCTCCAGCCCACTGGAAGGAGCTGCTGGGACTCGTATTAGTGCAGGGCAGCTGAACTGCCCTTCTCCCCAGCTGCCCTGCAGACCTCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp CCTCGCCTCAGGCACAGATGGGTCAGCTTCCTTCTACTCCACCCTTaGTCTCCTGGGTGGGGACAGCCACTGAGCCTCAGCTTCAGCCCA +
Preference number: 1 (lower is better)
Translates to: PRLRHRWVSFLLLHP*SPGWGQPLSLSFSP
Trigger: TGGGCTGAAGCTGAGGCTCAGTGGCTGTCCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTGCCTGAGGCGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp GAGTCATGGCAGCTGGAAGGTTGCCCACGCTGTTCCCCACACTCATaGTACCAAAGAGGTGGTCGCTGGTGTCCAGGGAGGCTGGCAGGG +
Preference number: 1 (lower is better)
Translates to: ESWQLEGCPRCSPHS*YQRGGRWCPGRLAG
Trigger: CCCTGCCAGCCTCCCTGGACACCAGCGACCACCTCTTTGGTAGCATGAGTGTGGGGAACAGCGTGGGCAACCTTCCAGCTGCCATGACTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR CCA 90 bp GTTAGACCGCCCCACCACGAGGCACAGTCCCTCTCTCCTCCATCCTaGGTACATGCACTCCTACCAGGCACTTGGTGGGCACTAGGGGTC +
Preference number: 1 (lower is better)
Translates to: VRPPHHEAQSLSPPS*VHALLPGTWWALGV
Trigger: GACCCCTAGTGCCCACCAAGTGCCTGGTAGGAGTGCATGTACCCAGGATGGAGGAGAGAGGGACTGTGCCTCGTGGTGGGGCGGTCTAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 90 bp TGCCCACGCTGTTCCCCACACTCATGCTACCAAAGAGGTGGTCGCTaGTGTCCAGGGAGGCTGGCAGGGGTGCTGAGTAGTGGAGGTTGG +
Preference number: 1 (lower is better)
Translates to: CPRCSPHSCYQRGGR*CPGRLAGVLSSGGW
Trigger: CCAACCTCCACTACTCAGCACCCCTGCCAGCCTCCCTGGACACCAGCGACCACCTCTTTGGTAGCATGAGTGTGGGGAACAGCGTGGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR TCA 90 bp GGCCCAGTCTGGATGCCAGGTGCCCCACACTCCTGGGGCTTGGTGTaGTCAGCCATGCTGGATGCACTGGATGATGTCCACCTAGCTGCT +
Preference number: 1 (lower is better)
Translates to: GPVWMPGAPHSWGLV*SAMLDALDDVHLAA
Trigger: AGCAGCTAGGTGGACATCATCCAGTGCATCCAGCATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGCATCCAGACTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp TCCGAGAGGAAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTaGCCCACACTCCTGGGGCTTGGTGTGATCAGCCATGCTGGATGC +
Preference number: 1 (lower is better)
Translates to: SERKNLLWGPSLDAR*PTLLGLGVISHAGC
Trigger: GCATCCAGCATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTTCCTCTCGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp TGGGGTGAGATCTCCCGTTACGCCTTCACCAGAGGACAGCAGCTGTaGAAGCAGGGATTCTCCTTCAGGGTCCTCCCCCTCCTGACCCTG +
Preference number: 1 (lower is better)
Translates to: WGEISRYAFTRGQQL*KQGFSFRVLPLLTL
Trigger: CAGGGTCAGGAGGGGGAGGACCCTGAAGGAGAATCCCTGCTTGCACAGCTGCTGTCCTCTGGTGAAGGCGTAACGGGAGATCTCACCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp GTTCAGTGGGCTGGTCGCAGAGAGCTGTCTGCTGAAGCCTTGATGTaGTTCAGGGCCAGGAGAGAGCGTGAGAGGGCTGACTGGAGGCTG +
Preference number: 1 (lower is better)
Translates to: VQWAGRRELSAEALM*FRARRERERADWRL
Trigger: CAGCCTCCAGTCAGCCCTCTCACGCTCTCTCCTGGCCCTGAAGCACATCAAGGCTTCAGCAGACAGCTCTCTGCGACCAGCCCACTGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
3UTR TCA 90 bp TACGGGTTCAGTGGGCTGGTCGCAGAGAGCTGTCTGCTGAAGCCTTaGTGTGCTTCAGGGCCAGGAGAGAGCGTGAGAGGGCTGACTGGA +
Preference number: 1 (lower is better)
Translates to: YGFSGLVAESCLLKP*CASGPGESVRGLTG
Trigger: TCCAGTCAGCCCTCTCACGCTCTCTCCTGGCCCTGAAGCACATCAAGGCTTCAGCAGACAGCTCTCTGCGACCAGCCCACTGAACCCGTA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
3UTR GCA 90 bp GCCCCACCACGAGGCACAGTCCCTCTCTCCTCCATCCTGGGTACATaGACTCCTACCAGGCACTTGGTGGGCACTAGGGGTCAATACAGA +
Preference number: 1 (lower is better)
Translates to: APPRGTVPLSSILGT*TPTRHLVGTRGQYR
Trigger: TCTGTATTGACCCCTAGTGCCCACCAAGTGCCTGGTAGGAGTGCATGTACCCAGGATGGAGGAGAGAGGGACTGTGCCTCGTGGTGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 90 bp CACAGATGGGTCAGCTTCCTTCTACTCCACCCTTGCTCTCCTGGGTaGGGACAGCCACTGAGCCTCAGCTTCAGCCCATGTCGCAGGAAG +
Preference number: 1 (lower is better)
Translates to: HRWVSFLLLHPCSPG*GQPLSLSFSPCRRK
Trigger: CTTCCTGCGACATGGGCTGAAGCTGAGGCTCAGTGGCTGTCCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 90 bp AAGGTGTTTGCTGGCTGTGACCACTGTCAGGGTGTTTGCTGGCTGTaGCCACCGGCAGGGTGTTTGCTGGCTCCACCCCAGCTTTCTCTG +
Preference number: 1 (lower is better)
Translates to: KVFAGCDHCQGVCWL*PPAGCLLAPPQLSL
Trigger: CAGAGAAAGCTGGGGTGGAGCCAGCAAACACCCTGCCGGTGGTCACAGCCAGCAAACACCCTGACAGTGGTCACAGCCAGCAAACACCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp ACATGGTCAGCTTCCTGGTCACCGGAAGCTCCAAAGCAGCTGGCCTaGAGCAGTACAACTGGTGCCATGGGCCGAAGAGTGCAGCTGTGT +
Preference number: 1 (lower is better)
Translates to: TWSASWSPEAPKQLA*SSTTGAMGRRVQLC
Trigger: ACACAGCTGCACTCTTCGGCCCATGGCACCAGTTGTACTGCTGCAGGCCAGCTGCTTTGGAGCTTCCGGTGACCAGGAAGCTGACCATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp AACAAAAGGCCGGGAGTTAGGACACTGGCCGGAAGTCTGACTAGCTaGTGGGATGGCCCCGTTCTGGAGCAGTGGGAACACTGGGAACCA +
Preference number: 1 (lower is better)
Translates to: NKRPGVRTLAGSLTS*WDGPVLEQWEHWEP
Trigger: TGGTTCCCAGTGTTCCCACTGCTCCAGAACGGGGCCATCCCAGCAGCTAGTCAGACTTCCGGCCAGTGTCCTAACTCCCGGCCTTTTGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 90 bp ACTGTCAGGGTGTTTGCTGGCTGTGACCACCGGCAGGGTGTTTGCTaGCTCCACCCCAGCTTTCTCTGGCCATTTCAGTTCCCCAGTTCC +
Preference number: 1 (lower is better)
Translates to: TVRVFAGCDHRQGVC*LHPSFLWPFQFPSS
Trigger: GGAACTGGGGAACTGAAATGGCCAGAGAAAGCTGGGGTGGAGCCAGCAAACACCCTGCCGGTGGTCACAGCCAGCAAACACCCTGACAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 90 bp AAAAGGCCGGGAGTTAGGACACTGGCCGGAAGTCTGACTAGCTGCTaGGATGGCCCCGTTCTGGAGCAGTGGGAACACTGGGAACCATCT +
Preference number: 1 (lower is better)
Translates to: KRPGVRTLAGSLTSC*DGPVLEQWEHWEPS
Trigger: AGATGGTTCCCAGTGTTCCCACTGCTCCAGAACGGGGCCATCCCAGCAGCTAGTCAGACTTCCGGCCAGTGTCCTAACTCCCGGCCTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp CGATCTCTGCCTGAAGACGGACACGGGAGCTGGCTTGAGTGTGTATaGTGGGGCGCTGGGCAGCTCAGAGGAGTGAAAAGCTTCCACTTT +
Preference number: 1 (lower is better)
Translates to: RSLPEDGHGSWLECV*WGAGQLRGVKSFHF
Trigger: AAAGTGGAAGCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCTCCCGTGTCCGTCTTCAGGCAGAGATCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp GTTGGCCACAGACGGCTGCGGGTGGCACTTGAGGGACGAGGAGAGTaGCATCTTACTGAGTGTGGCTTGGATGGAAGGGTTACTTCGAGA +
Preference number: 1 (lower is better)
Translates to: VGHRRLRVALEGRGE*HLTECGLDGRVTSR
Trigger: TCTCGAAGTAACCCTTCCATCCAAGCCACACTCAGTAAGATGGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGCCGTCTGTGGCCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR CCA 90 bp CTTTTACATCAGCATCGATCTCTGCCTGAAGACGGACACGGGAGCTaGCTTGAGTGTGTATGCTGGGGCGCTGGGCAGCTCAGAGGAGTG +
Preference number: 1 (lower is better)
Translates to: LLHQHRSLPEDGHGS*LECVCWGAGQLRGV
Trigger: CACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCTCCCGTGTCCGTCTTCAGGCAGAGATCGATGCTGATGTAAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 90 bp GCTGGCTTGAGTGTGTATGCTGGGGCGCTGGGCAGCTCAGAGGAGTaGAAAGCTTCCACTTTAACTAAAGTCACCCCGGGTGCTCTGGGA +
Preference number: 1 (lower is better)
Translates to: AGLSVYAGALGSSEE*KASTLTKVTPGALG
Trigger: TCCCAGAGCACCCGGGGTGACTTTAGTTAAAGTGGAAGCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp AGTGGAGGTTGGTTAGATCTGGTAACGACCCTCCGGTGTTCAGGGTaGCCAGGAACGGTGAGAGGCCTGTGTTCTGGCCATTATGTGGGA +
Preference number: 1 (lower is better)
Translates to: SGGWLDLVTTLRCSG*PGTVRGLCSGHYVG
Trigger: TCCCACATAATGGCCAGAACACAGGCCTCTCACCGTTCCTGGGCACCCTGAACACCGGAGGGTCGTTACCAGATCTAACCAACCTCCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR CCA 90 bp GCCGGAAGTCTGACTAGCTGCTGGGATGGCCCCGTTCTGGAGCAGTaGGAACACTGGGAACCATCTGTGCATAAATCAGAAGAGCCCAAC +
Preference number: 1 (lower is better)
Translates to: AGSLTSCWDGPVLEQ*EHWEPSVHKSEEPN
Trigger: GTTGGGCTCTTCTGATTTATGCACAGATGGTTCCCAGTGTTCCCACTGCTCCAGAACGGGGCCATCCCAGCAGCTAGTCAGACTTCCGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 90 bp TATTGCTTAACAAAAGGCCGGGAGTTAGGACACTGGCCGGAAGTCTaGCTAGCTGCTGGGATGGCCCCGTTCTGGAGCAGTGGGAACACT +
Preference number: 1 (lower is better)
Translates to: YCLTKGRELGHWPEV*LAAGMAPFWSSGNT
Trigger: AGTGTTCCCACTGCTCCAGAACGGGGCCATCCCAGCAGCTAGTCAGACTTCCGGCCAGTGTCCTAACTCCCGGCCTTTTGTTAAGCAATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 90 bp TTGGAGACCAGAGGAGGTTCTTATCCCCAGGTGAGTCATGGCAGCTaGAAGGTTGCCCACGCTGTTCCCCACACTCATGCTACCAAAGAG +
Preference number: 1 (lower is better)
Translates to: LETRGGSYPQVSHGS*KVAHAVPHTHATKE
Trigger: CTCTTTGGTAGCATGAGTGTGGGGAACAGCGTGGGCAACCTTCCAGCTGCCATGACTCACCTGGGGATAAGAACCTCCTCTGGTCTCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR CCA 90 bp GAGAACTTTGGAGACCAGAGGAGGTTCTTATCCCCAGGTGAGTCATaGCAGCTGGAAGGTTGCCCACGCTGTTCCCCACACTCATGCTAC +
Preference number: 1 (lower is better)
Translates to: ENFGDQRRFLSPGES*QLEGCPRCSPHSCY
Trigger: GTAGCATGAGTGTGGGGAACAGCGTGGGCAACCTTCCAGCTGCCATGACTCACCTGGGGATAAGAACCTCCTCTGGTCTCCAAAGTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR TCA 90 bp TTACTTCGAGAACTTTGGAGACCAGAGGAGGTTCTTATCCCCAGGTaGGTCATGGCAGCTGGAAGGTTGCCCACGCTGTTCCCCACACTC +
Preference number: 1 (lower is better)
Translates to: LLRELWRPEEVLIPR*VMAAGRLPTLFPTL
Trigger: GAGTGTGGGGAACAGCGTGGGCAACCTTCCAGCTGCCATGACTCACCTGGGGATAAGAACCTCCTCTGGTCTCCAAAGTTCTCGAAGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR GCA 90 bp AGTGAGCAAACAGGTCTCCCTCTCCTCCTGTCTGTGAGGGAAAGGTaGGCATACAGGAAGCAGCAGCAAAGAGATCATAAACCGGGAGGA +
Preference number: 1 (lower is better)
Translates to: SEQTGLPLLLSVRER*AYRKQQQRDHKPGG
Trigger: TCCTCCCGGTTTATGATCTCTTTGCTGCTGCTTCCTGTATGCGCACCTTTCCCTCACAGACAGGAGGAGAGGGAGACCTGTTTGCTCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 90 bp CTGACTAGCTGCTGGGATGGCCCCGTTCTGGAGCAGTGGGAACACTaGGAACCATCTGTGCATAAATCAGAAGAGCCCAACAGGAAATGT +
Preference number: 1 (lower is better)
Translates to: LTSCWDGPVLEQWEH*EPSVHKSEEPNRKC
Trigger: ACATTTCCTGTTGGGCTCTTCTGATTTATGCACAGATGGTTCCCAGTGTTCCCACTGCTCCAGAACGGGGCCATCCCAGCAGCTAGTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp CACTTGGTGGGCACTAGGGGTCAATACAGAACAAGGCACAGTTCCTaGCCTCTGGGAGCTTACAGTCTAGTGGGCATTGCATTAAACTTG +
Preference number: 1 (lower is better)
Translates to: HLVGTRGQYRTRHSS*PLGAYSLVGIALNL
Trigger: CAAGTTTAATGCAATGCCCACTAGACTGTAAGCTCCCAGAGGGCAGGAACTGTGCCTTGTTCTGTATTGACCCCTAGTGCCCACCAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 90 bp GACACGATGATCCCACGGATCAGGCTCAACGCAGAGAGCAGATTGTaGTGGAAACCCCTTCCTCTCAACTTTTACATCAGCATCGATCTC +
Preference number: 1 (lower is better)
Translates to: DTMIPRIRLNAESRL*WKPLPLNFYISIDL
Trigger: GAGATCGATGCTGATGTAAAAGTTGAGAGGAAGGGGTTTCCAGCACAATCTGCTCTCTGCGTTGAGCCTGATCCGTGGGATCATCGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 90 bp GGGAGGAAGCAAACTGCCTTCAGTTTGCCTAACTTAAGCCTGCCCTaGGACGGCTGGGTAAGCTTCTTCATTTTAAGTGAGCCATTGGAC +
Preference number: 1 (lower is better)
Translates to: GRKQTAFSLPNLSLP*DGWVSFFILSEPLD
Trigger: GTCCAATGGCTCACTTAAAATGAAGAAGCTTACCCAGCCGTCCCAGGGCAGGCTTAAGTTAGGCAAACTGAAGGCAGTTTGCTTCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 90 bp ACGATGATCCCACGGATCAGGCTCAACGCAGAGAGCAGATTGTGCTaGAAACCCCTTCCTCTCAACTTTTACATCAGCATCGATCTCTGC +
Preference number: 1 (lower is better)
Translates to: TMIPRIRLNAESRLC*KPLPLNFYISIDLC
Trigger: GCAGAGATCGATGCTGATGTAAAAGTTGAGAGGAAGGGGTTTCCAGCACAATCTGCTCTCTGCGTTGAGCCTGATCCGTGGGATCATCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 90 bp CAAACTGCCTTCAGTTTGCCTAACTTAAGCCTGCCCTGGGACGGCTaGGTAAGCTTCTTCATTTTAAGTGAGCCATTGGACAGAGTGATG +
Preference number: 1 (lower is better)
Translates to: QTAFSLPNLSLPWDG*VSFFILSEPLDRVM
Trigger: CATCACTCTGTCCAATGGCTCACTTAAAATGAAGAAGCTTACCCAGCCGTCCCAGGGCAGGCTTAAGTTAGGCAAACTGAAGGCAGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 90 bp TTTGGAGCACTGACGTGTTACACAGCATTTTCTACATTTACACACTaGCTGACTGGATGGCCAATAAAGAGAATTAAGGGTGACATGGTC +
Preference number: 1 (lower is better)
Translates to: FGALTCYTAFSTFTH*LTGWPIKRIKGDMV
Trigger: GACCATGTCACCCTTAATTCTCTTTATTGGCCATCCAGTCAGTCAGTGTGTAAATGTAGAAAATGCTGTGTAACACGTCAGTGCTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR GCA 90 bp TCTGAGGTCACCATCTGGGAGGCAGGATACGGGTTCAGTGGGCTGGTCGCAGAGGGGCTGACTGGAGGCTaGCTGCGCCGAGAGGGGCCA +
Preference number: 2 (lower is better)
Translates to: SEVTIWEAGYGFSGLVAEGLTGG*LRREGP
Trigger: TGGCCCCTCTCGGCGCAGGCAGCCTCCAGTCAGCCC...CTCTGCGACCAGCCCACTGAACCCGTATCCTGCCTCCCAGATGGTGACCTCAGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
3UTR-3UTR TCA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTCTCCACCCGGCTGTCTaGAGAGCCGCGGTGTGGGGA +
Preference number: 2 (lower is better)
Translates to: GGREQGKGELILTSPHTRLHPAV*RAAVWG
Trigger: TCCCCACACCGCGGCTCTTCAGACAGCCGGGTGGAG...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTAGCAGCTCCTTCCAGTaGGCTGGAGGGTGGCAGGCC +
Preference number: 2 (lower is better)
Translates to: GGREQGKGELILTSPHTRSSSFQ*AGGWQA
Trigger: GGCCTGCCACCCTCCAGCCCACTGGAAGGAGCTGCT...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp TCACCATCTGGGAGGCAGGATACGGGTTCAGTGGGCTGGTCGCAGAGAGCTGTCCGTGAGAGGGCTGACTaGAGGCTGCCTGCGCCGAGA +
Preference number: 2 (lower is better)
Translates to: SPSGRQDTGSVGWSQRAVRERAD*RLPAPR
Trigger: TCTCGGCGCAGGCAGCCTCCAGTCAGCCCTCTCACG...GACAGCTCTCTGCGACCAGCCCACTGAACCCGTATCCTGCCTCCCAGATGGTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
3UTR CAA 90 bp AACTGGTGCCATGGGCCGAAGAGTGCAGCTGTGTCTAGCAAAGCCTaGGCTGAGCTCAGTGGAGAGCCCGGGGCAGCGGCTCCCTCTATG +
Preference number: 2 (lower is better)
Translates to: NWCHGPKSAAVSSKA*AELSGEPGAAAPSM
Trigger: CATAGAGGGAGCCGCTGCCCCGGGCTCTCCACTGAGCTCAGCCAAGGCTTTGCTAGACACAGCTGCACTCTTCGGCCCATGGCACCAGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 90 bp TCCTCGCCTCAGGCACAGATGGGTCAGCTTCCTTCTACTCCACCCTaGCTCTCCTGGGTGGGGACAGCCACTGAGCCTCAGCTTCAGCCC +
Preference number: 2 (lower is better)
Translates to: SSPQAQMGQLPSTPP*LSWVGTATEPQLQP
Trigger: GGGCTGAAGCTGAGGCTCAGTGGCTGTCCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTGCCTGAGGCGAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp CGAGAGGAAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTGCCCCACACTAGCTGGAGGGCTGCCTaGCCTTGGCGGTCAGACAGA +
Preference number: 2 (lower is better)
Translates to: REEEFAVGAQSGCQVPHTSWRAA*PWRSDR
Trigger: TCTGTCTGACCGCCAAGGCCAGGCAGCCCTCCAGCT...AGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTTCCTCTCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR TCA 90 bp CAGGCACAGATGGGTCAGCTTCCTTCTACTCCACCCTTGCTCTCCTGGGTGGGGGGTGTTTGCTGGCTGTaGCCACCGGCAGGGTGTTTG +
Preference number: 2 (lower is better)
Translates to: QAQMGQLPSTPPLLSWVGGVCWL*PPAGCL
Trigger: CAAACACCCTGCCGGTGGTCACAGCCAGCAAACACC...CCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTGCCTG
61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp CGAGAGGAAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTGCCCCACACTCGGCAGGGTGTTTGCTaGCTCCACCCCAGCTTTCTC +
Preference number: 2 (lower is better)
Translates to: REEEFAVGAQSGCQVPHTRQGVC*LHPSFL
Trigger: GAGAAAGCTGGGGTGGAGCCAGCAAACACCCTGCCG...AGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTTCCTCTCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTCTCCTTCCAGTGGGCTaGAGGGTGGCAGGCCTAAGA +
Preference number: 2 (lower is better)
Translates to: GGREQGKGELILTSPHTRLLPVG*RVAGLR
Trigger: TCTTAGGCCTGCCACCCTCCAGCCCACTGGAAGGAG...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp AGCTGGCTTGAGTGTGTATGCTGGGGCGCTGGGCAGCTCAGAGGAGTGAAAAGCGGTCTGCAGGGCAGCTaGGGAGAAGGGCAGTTCAGC +
Preference number: 2 (lower is better)
Translates to: SWLECVCWGAGQLRGVKSGLQGS*GEGQFS
Trigger: GCTGAACTGCCCTTCTCCCCAGCTGCCCTGCAGACC...GCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 90 bp ATACGGGTTCAGTGGGCTGGTCGCAGAGAGCTGTCTGCTGAAGCCTaGATGTGCTTCAGGGCCAGGAGAGAGCGTGAGAGGGCTGACTGG +
Preference number: 2 (lower is better)
Translates to: IRVQWAGRRELSAEA*MCFRARRERERADW
Trigger: CCAGTCAGCCCTCTCACGCTCTCTCCTGGCCCTGAAGCACATCAAGGCTTCAGCAGACAGCTCTCTGCGACCAGCCCACTGAACCCGTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
3UTR-3UTR CCA 90 bp GCAGAGGCGTTGGCCACAGACGGCTGCGGGTGGCACTTGAGGGACGAGGAGAGTGAGAGGCCTGTGTTCTaGCCATTATGTGGGAAAGCA +
Preference number: 2 (lower is better)
Translates to: AEALATDGCGWHLRDEESERPVF*PLCGKA
Trigger: TGCTTTCCCACATAATGGCCAGAACACAGGCCTCTC...ACTCTCCTCGTCCCTCAAGTGCCACCCGCAGCCGTCTGTGGCCAACGCCTCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR-3UTR TCA 90 bp TGCTCTGAGGTCACCATCTGGGAGGCAGGATACGGGTTCAGTGGGCTGGTCGCATGTCTGCTGAAGCCTTaGTGTGCTTCAGGGCCAGGA +
Preference number: 2 (lower is better)
Translates to: CSEVTIWEAGYGFSGLVACLLKP*CASGPG
Trigger: TCCTGGCCCTGAAGCACATCAAGGCTTCAGCAGACA...TGCGACCAGCCCACTGAACCCGTATCCTGCCTCCCAGATGGTGACCTCAGAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
3UTR-3UTR GCA 90 bp GCCAGGTGCCCCACACTCCTGGGGCTTGGTGTGATCAGCCATGCTGGATGCACTTCTGTGAGGGAAAGGTaGGCATACAGGAAGCAGCAG +
Preference number: 2 (lower is better)
Translates to: ARCPTLLGLGVISHAGCTSVRER*AYRKQQ
Trigger: CTGCTGCTTCCTGTATGCGCACCTTTCCCTCACAGA...AGTGCATCCAGCATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR GCA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTTCCTGGAACTCACTCTaGAGACCAGGCTGGCCTCAA +
Preference number: 2 (lower is better)
Translates to: GGREQGKGELILTSPHTRSWNSL*RPGWPQ
Trigger: TTGAGGCCAGCCTGGTCTGCAGAGTGAGTTCCAGGA...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp TGTCACCTCACACCTGCCTCTTCCCCGGTGTGTGGGCGTCACCGACACGATGATGTACAACTGGTGCCATaGGCCGAAGAGTGCAGCTGT +
Preference number: 2 (lower is better)
Translates to: CHLTPASSPVCGRHRHDDVQLVP*AEECSC
Trigger: ACAGCTGCACTCTTCGGCCCATGGCACCAGTTGTAC...ATCATCGTGTCGGTGACGCCCACACACCGGGGAAGAGGCAGGTGTGAGGTGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp CCTCTCCTCCTGTCTGTGAGGGAAAGGTGCGCATACAGGAAGCAGCAGCAAAGAAGAATACCCGCCAGCTaGAGGGCTGCCTGGCCTTGG +
Preference number: 2 (lower is better)
Translates to: PLLLSVRERCAYRKQQQRRIPAS*RAAWPW
Trigger: CCAAGGCCAGGCAGCCCTCCAGCTGGCGGGTATTCT...TCTTTGCTGCTGCTTCCTGTATGCGCACCTTTCCCTCACAGACAGGAGGAGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp CAGCAGCTCCTTCCAGTGGGCTGGAGGGTGGCAGGCCTAAGAGGGAGGGCATCTCTGCCCTGGGACGGCTaGGTAAGCTTCTTCATTTTA +
Preference number: 2 (lower is better)
Translates to: QQLLPVGWRVAGLRGRASLPWDG*VSFFIL
Trigger: TAAAATGAAGAAGCTTACCCAGCCGTCCCAGGGCAG...AGATGCCCTCCCTCTTAGGCCTGCCACCCTCCAGCCCACTGGAAGGAGCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp GCCAGGTGCCCCACACTCCTGGGGCTTGGTGTGATCAGCCATGCTGGATGCACTCTACCAGGCACTTGGTaGGCACTAGGGGTCAATACA +
Preference number: 2 (lower is better)
Translates to: ARCPTLLGLGVISHAGCTLPGTW*ALGVNT
Trigger: TGTATTGACCCCTAGTGCCCACCAAGTGCCTGGTAG...AGTGCATCCAGCATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTACCAGGCCAGTGGCATaGTCAGGGGAAGAGGATTCT +
Preference number: 2 (lower is better)
Translates to: GGREQGKGELILTSPHTRTRPVA*SGEEDS
Trigger: AGAATCCTCTTCCCCTGACCATGCCACTGGCCTGGT...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR TCA 90 bp CAGGCACAGATGGGTCAGCTTCCTTCTACTCCACCCTTGCTCTCCTGGGTGGGGTGTCCACCTAGCTGCTaGGGGACATATTCCCTAGGA +
Preference number: 2 (lower is better)
Translates to: QAQMGQLPSTPPLLSWVGCPPSC*GTYSLG
Trigger: TCCTAGGGAATATGTCCCTCAGCAGCTAGGTGGACA...CCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTGCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp AGCTGGCTTGAGTGTGTATGCTGGGGCGCTGGGCAGCTCAGAGGAGTGAAAAGCCACCCCAGCTTTCTCTaGCCATTTCAGTTCCCCAGT +
Preference number: 2 (lower is better)
Translates to: SWLECVCWGAGQLRGVKSHPSFL*PFQFPS
Trigger: ACTGGGGAACTGAAATGGCCAGAGAAAGCTGGGGTG...GCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR TCA 90 bp AAAGTGGGCTCTGCTCTGAGGTCACCATCTGGGAGGCAGGATACGGGTTCAGTGCAGAGAGCTGTCTGCTaGAGCCTTGATGTGCTTCAG +
Preference number: 2 (lower is better)
Translates to: KVGSALRSPSGRQDTGSVQRAVC*SLDVLQ
Trigger: CTGAAGCACATCAAGGCTTCAGCAGACAGCTCTCTG...CACTGAACCCGTATCCTGCCTCCCAGATGGTGACCTCAGAGCAGAGCCCACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
3UTR-3UTR CCA 90 bp AGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGTGCTAAAACCCACCACCCTGCTCCTCCCTTGTGCTaGGTGGACATCACTTTCCTC +
Preference number: 2 (lower is better)
Translates to: RRAHPHFSPHSCAKTHHPAPPLC*VDITFL
Trigger: GAGGAAAGTGATGTCCACCCAGCACAAGGGAGGAGC...AGGGTGGTGGGTTTTAGCACACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR TCA 90 bp AGCTGGCTTGAGTGTGTATGCTGGGGCGCTGGGCAGCTCAGAGGAGTGAAAAGCTTCCATCTTCAGTGCTaGTGGGAATCTGAGGTTTGG +
Preference number: 2 (lower is better)
Translates to: SWLECVCWGAGQLRGVKSFHLQC*WESEVW
Trigger: CCAAACCTCAGATTCCCATCAGCACTGAAGATGGAA...GCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR GCA 90 bp CAGGCACAGATGGGTCAGCTTCCTTCTACTCCACCCTTGCTCTCCTGGGTGGGGACTCAGAAATCATACTaGCTCTGTCTCCCAAGTGCT +
Preference number: 2 (lower is better)
Translates to: QAQMGQLPSTPPLLSWVGTQKSY*LCLPSA
Trigger: AGCACTTGGGAGACAGAGGCAGTATGATTTCTGAGT...CCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR GCA 90 bp CCTGCAGCCAGCGCTTTCCCATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGGGTGCTGGTAGAATCTaGTCAGATTACTTACTGTGT +
Preference number: 2 (lower is better)
Translates to: PAASAFPLAGESLRNRAAGAGRI*SDYLLC
Trigger: ACACAGTAAGTAATCTGAGCAGATTCTACCAGCACC...CGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAATGGGAAAGCGCTGGCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp AGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGTGCTAAAACCCACCACCCTTGTCTAGCAAAGCCTTaGCTGAGCTCAGTGGAGAGC +
Preference number: 2 (lower is better)
Translates to: RRAHPHFSPHSCAKTHHPCLAKP*LSSVES
Trigger: GCTCTCCACTGAGCTCAGCCAAGGCTTTGCTAGACA...AGGGTGGTGGGTTTTAGCACACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGTGTGGGGGCCCAGTCTaGATGCCAGGTGCCCCACAC +
Preference number: 2 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTCGGPV*MPGAPH
Trigger: GTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACA...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp GTTGGCCACAGACGGCTGCGGGTGGCACTTGAGGGACGAGGAGAGTGCCATCTTTTACTTCGAGAACTTTaGAGACCAGAGGAGGTTCTT +
Preference number: 2 (lower is better)
Translates to: VGHRRLRVALEGRGECHLLLREL*RPEEVL
Trigger: AAGAACCTCCTCTGGTCTCCAAAGTTCTCGAAGTAA...AAGATGGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGCCGTCTGTGGCCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR-3UTR TCA 90 bp CCTGCAGCCAGCGCTTTCCCATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGCTTCTTCATTTTAAGTaGGCCATTGGACAGAGTGAT +
Preference number: 2 (lower is better)
Translates to: PAASAFPLAGESLRNRAALLHFK*AIGQSD
Trigger: ATCACTCTGTCCAATGGCTCACTTAAAATGAAGAAG...CGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAATGGGAAAGCGCTGGCTGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR TCA 90 bp CAGGCACAGATGGGTCAGCTTCCTTCTACTCCACCCTTGCTCTCCTGGGTGGGGAATAAAAGAGTCCCATaGACCAGGCCTTCTTTCTTT +
Preference number: 2 (lower is better)
Translates to: QAQMGQLPSTPPLLSWVGNKRVP*TRPSFF
Trigger: AAAGAAAGAAGGCCTGGTTCATGGGACTCTTTTATT...CCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTGCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR GCA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGCACCGGCAGGGTGTTTaGTGGCTCCACCCCAGCTTT +
Preference number: 2 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTHRQGV*WLHPSF
Trigger: AAAGCTGGGGTGGAGCCAGCAAACACCCTGCCGGTG...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 90 bp CATCTTACTGAGTGTGGCTTGGATGGAAGGGTTACTTCGAGAACTTaGGAGACCAGAGGAGGTTCTTATCCCCAGGTGAGTCATGGCAGC +
Preference number: 2 (lower is better)
Translates to: HLTECGLDGRVTSRT*ETRGGSYPQVSHGS
Trigger: GCTGCCATGACTCACCTGGGGATAAGAACCTCCTCTGGTCTCCAAAGTTCTCGAAGTAACCCTTCCATCCAAGCCACACTCAGTAAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR-3UTR GCA 90 bp ATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGTAGGGTATGGGGTGAGATCTCAGTCTAGTGGGCATTaGATTAAACTTGAGGTCTGC +
Preference number: 2 (lower is better)
Translates to: IGWRKPQEQGSVGYGVRSQSSGH*IKLEVC
Trigger: GCAGACCTCAAGTTTAATGCAATGCCCACTAGACTG...AGATCTCACCCCATACCCTACGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR TCA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGGGTGTTTGCTGGCTGTaGCCACTGTCAGGGTGTTTG +
Preference number: 2 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTGVCWL*PLSGCL
Trigger: CAAACACCCTGACAGTGGTCACAGCCAGCAAACACC...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR TCA 90 bp ATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGTAGGGTATGGGGTGAGATCTTCTACATTTACACACTaGCTGACTGGATGGCCAATA +
Preference number: 2 (lower is better)
Translates to: IGWRKPQEQGSVGYGVRSSTFTH*LTGWPI
Trigger: TATTGGCCATCCAGTCAGTCAGTGTGTAAATGTAGA...AGATCTCACCCCATACCCTACGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CCA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGCGCTTTCCCATTGGCTaGAGAAAGCCTCAGGAACAG +
Preference number: 2 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTRFPIG*RKPQEQ
Trigger: CTGTTCCTGAGGCTTTCTCCAGCCAATGGGAAAGCG...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 90 bp TATAAAACTTGGAAGCTACTTTATACAAAGTCCGATCTTTCAATATaGCTTAACAAAAGGCCGGGAGTTAGGACACTGGCCGGAAGTCTG +
Preference number: 2 (lower is better)
Translates to: YKTWKLLYTKSDLSI*LNKRPGVRTLAGSL
Trigger: CAGACTTCCGGCCAGTGTCCTAACTCCCGGCCTTTTGTTAAGCAATATTGAAAGATCGGACTTTGTATAAAGTAGCTTCCAAGTTTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp CTGGGGCACGTGGCCGCACAGCTCCACCCGGCTGTCTaGAGAGCCGCGGTGTGGGGAGCTGGAGCAGCCTCT +
Preference number: 3 (lower is better)
Translates to: LGHVAAQLHPAV*RAAVWGAGAAS
Trigger: AGAGGCTGCTCCAGCTCCCCACACCGCGGCTCTTCAGACAGCCGGGTGGAGCTGTGCGGCCACGTGCCCCAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp GAGGGGTGCAGAGCAGAGGCGTTGGCCACAGACGGCTaGGGGTGGCACTTGAGGGACGAGGAGAGTGCCATC +
Preference number: 3 (lower is better)
Translates to: EGCRAEALATDG*GWHLRDEESAI
Trigger: GATGGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGCCGTCTGTGGCCAACGCCTCTGCTCTGCACCCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR-3UTR CAA 90 bp GCCAGGTGCCCCACACTCCTGGGGCTTGGTGTGATCAGCCATGCTGGATGCACTGAGGGCTGCCTGGCCTaGGCGGTCAGACAGAAAGGC +
Preference number: 3 (lower is better)
Translates to: ARCPTLLGLGVISHAGCTEGCLA*AVRQKG
Trigger: GCCTTTCTGTCTGACCGCCAAGGCCAGGCAGCCCTC...AGTGCATCCAGCATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp GCTGGCTGTGACCACTGTCAGGGTGTTTGCTGGCTGTaGCCACCGGCAGGGTGTTTGCTGGCTCCACCCCAG +
Preference number: 3 (lower is better)
Translates to: AGCDHCQGVCWL*PPAGCLLAPPQ
Trigger: CTGGGGTGGAGCCAGCAAACACCCTGCCGGTGGTCACAGCCAGCAAACACCCTGACAGTGGTCACAGCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp ATGGGCCGAAGAGTGCAGCTGTGTCTAGCAAAGCCTTaGCTGAGCTCAGTGGAGAGCCCGGGGCAGCGGCTC +
Preference number: 3 (lower is better)
Translates to: MGRRVQLCLAKP*LSSVESPGQRL
Trigger: GAGCCGCTGCCCCGGGCTCTCCACTGAGCTCAGCCAAGGCTTTGCTAGACACAGCTGCACTCTTCGGCCCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CAA 90 bp CGAGAGGAAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTGCCCCACACTCCACCGGCAGGGTGTTaGCTGGCTCCACCCCAGCTT +
Preference number: 3 (lower is better)
Translates to: REEEFAVGAQSGCQVPHTPPAGC*LAPPQL
Trigger: AAGCTGGGGTGGAGCCAGCAAACACCCTGCCGGTGG...AGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTTCCTCTCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CAA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTACCCCGGCTCCTCCCTaGTGCTGGGTGGACATCACT +
Preference number: 3 (lower is better)
Translates to: GGREQGKGELILTSPHTRTPAPP*CWVDIT
Trigger: AGTGATGTCCACCCAGCACAAGGGAGGAGCCGGGGT...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp GGTCTGCAGGGCAGCTGGGGAGAAGGGCAGTTCAGCTaGCCTGCACTAATACGAGTCCCAGCAGCTCCTTCC +
Preference number: 3 (lower is better)
Translates to: GLQGSWGEGQFS*PALIRVPAAPS
Trigger: GGAAGGAGCTGCTGGGACTCGTATTAGTGCAGGGCAGCTGAACTGCCCTTCTCCCCAGCTGCCCTGCAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp CCCCACCACGAGGCACAGTCCCTCTCTCCTCCATCCTaGGTACATGCACTCCTACCAGGCACTTGGTGGGCA +
Preference number: 3 (lower is better)
Translates to: PHHEAQSLSPPS*VHALLPGTWWA
Trigger: TGCCCACCAAGTGCCTGGTAGGAGTGCATGTACCCAGGATGGAGGAGAGAGGGACTGTGCCTCGTGGTGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp AGGCACAGATGGGTCAGCTTCCTTCTACTCCACCCTTaGTCTCCTGGGTGGGGACAGCCACTGAGCCTCAGC +
Preference number: 3 (lower is better)
Translates to: RHRWVSFLLLHP*SPGWGQPLSLS
Trigger: GCTGAGGCTCAGTGGCTGTCCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp CCTGAAGACGGACACGGGAGCTGGCTTGAGTGTGTATaGTGGGGCGCTGGGCAGCTCAGAGGAGTGAAAAGC +
Preference number: 3 (lower is better)
Translates to: PEDGHGSWLECV*WGAGQLRGVKS
Trigger: GCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCTCCCGTGTCCGTCTTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp CAGCTGGAAGGTTGCCCACGCTGTTCCCCACACTCATaGTACCAAAGAGGTGGTCGCTGGTGTCCAGGGAGG +
Preference number: 3 (lower is better)
Translates to: QLEGCPRCSPHS*YQRGGRWCPGR
Trigger: CCTCCCTGGACACCAGCGACCACCTCTTTGGTAGCATGAGTGTGGGGAACAGCGTGGGCAACCTTCCAGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR CCA 72 bp ATGGGTCAGCTTCCTTCTACTCCACCCTTGCTCTCCTaGGTGGGGACAGCCACTGAGCCTCAGCTTCAGCCC +
Preference number: 3 (lower is better)
Translates to: MGQLPSTPPLLS*VGTATEPQLQP
Trigger: GGGCTGAAGCTGAGGCTCAGTGGCTGTCCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp TGGATGCCAGGTGCCCCACACTCCTGGGGCTTGGTGTaGTCAGCCATGCTGGATGCACTGGATGATGTCCAC +
Preference number: 3 (lower is better)
Translates to: WMPGAPHSWGLV*SAMLDALDDVH
Trigger: GTGGACATCATCCAGTGCATCCAGCATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGCATCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp ACAAAAGGCCGGGAGTTAGGACACTGGCCGGAAGTCTaGCTAGCTGCTGGGATGGCCCCGTTCTGGAGCAGT +
Preference number: 3 (lower is better)
Translates to: TKGRELGHWPEV*LAAGMAPFWSS
Trigger: ACTGCTCCAGAACGGGGCCATCCCAGCAGCTAGTCAGACTTCCGGCCAGTGTCCTAACTCCCGGCCTTTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp AGCGTCTGTGGGCAGGAAGGAAAGTGGGCTCTGCTCTaGGGTCACCATCTGGGAGGCAGGATACGGGTTCAG +
Preference number: 3 (lower is better)
Translates to: SVCGQEGKWALL*GHHLGGRIRVQ
Trigger: CTGAACCCGTATCCTGCCTCCCAGATGGTGACCTCAGAGCAGAGCCCACTTTCCTTCCTGCCCACAGACGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
3UTR GCA 72 bp AAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTaGCCCACACTCCTGGGGCTTGGTGTGATCAGCCAT +
Preference number: 3 (lower is better)
Translates to: KNLLWGPSLDAR*PTLLGLGVISH
Trigger: ATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp ATCTCCCGTTACGCCTTCACCAGAGGACAGCAGCTGTaGAAGCAGGGATTCTCCTTCAGGGTCCTCCCCCTC +
Preference number: 3 (lower is better)
Translates to: ISRYAFTRGQQL*KQGFSFRVLPL
Trigger: GAGGGGGAGGACCCTGAAGGAGAATCCCTGCTTGCACAGCTGCTGTCCTCTGGTGAAGGCGTAACGGGAGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp CGGCAGGGTGTTTGCTGGCTCCACCCCAGCTTTCTCTaGCCATTTCAGTTCCCCAGTTCCACTGCACTGTGC +
Preference number: 3 (lower is better)
Translates to: RQGVCWLHPSFL*PFQFPSSTALC
Trigger: GCACAGTGCAGTGGAACTGGGGAACTGAAATGGCCAGAGAAAGCTGGGGTGGAGCCAGCAAACACCCTGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp GGAAGCTCCAAAGCAGCTGGCCTGCAGCAGTACAACTaGTGCCATGGGCCGAAGAGTGCAGCTGTGTCTAGC +
Preference number: 3 (lower is better)
Translates to: GSSKAAGLQQYN*CHGPKSAAVSS
Trigger: GCTAGACACAGCTGCACTCTTCGGCCCATGGCACCAGTTGTACTGCTGCAGGCCAGCTGCTTTGGAGCTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp GAAGACGGACACGGGAGCTGGCTTGAGTGTGTATGCTaGGGCGCTGGGCAGCTCAGAGGAGTGAAAAGCTTC +
Preference number: 3 (lower is better)
Translates to: EDGHGSWLECVC*GAGQLRGVKSF
Trigger: GAAGCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCTCCCGTGTCCGTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp GGAGACCAGAGGAGGTTCTTATCCCCAGGTGAGTCATaGCAGCTGGAAGGTTGCCCACGCTGTTCCCCACAC +
Preference number: 3 (lower is better)
Translates to: GDQRRFLSPGES*QLEGCPRCSPH
Trigger: GTGTGGGGAACAGCGTGGGCAACCTTCCAGCTGCCATGACTCACCTGGGGATAAGAACCTCCTCTGGTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR-3UTR CAA 90 bp CACTCATGCTACCAAAGAGGTGGTCGCTGGTGTCCAGGGAGGCTGGCAGGGGTGTTATGTGGGAAAGCATaGCCGCCCCCAACATCACAG +
Preference number: 3 (lower is better)
Translates to: HSCYQRGGRWCPGRLAGVLCGKA*PPPTSQ
Trigger: CTGTGATGTTGGGGGCGGCAATGCTTTCCCACATAA...CACCCCTGCCAGCCTCCCTGGACACCAGCGACCACCTCTTTGGTAGCATGAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR TCA 72 bp GGTGGCAGGCCTAAGAGGGAGGGCATCTTGTGCAGGTaGCACACCTGTAGCCTCCCTTTCCTCCTCCATTCT +
Preference number: 3 (lower is better)
Translates to: GGRPKREGILCR*HTCSLPFLLHS
Trigger: AGAATGGAGGAGGAAAGGGAGGCTACAGGTGTGTCACCTGCACAAGATGCCCTCCCTCTTAGGCCTGCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp AGACGGCTGCGGGTGGCACTTGAGGGACGAGGAGAGTaGCATCTTACTGAGTGTGGCTTGGATGGAAGGGTT +
Preference number: 3 (lower is better)
Translates to: RRLRVALEGRGE*HLTECGLDGRV
Trigger: AACCCTTCCATCCAAGCCACACTCAGTAAGATGGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGCCGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR CCA 72 bp GTGTTTGCTGGCTGTGACCACCGGCAGGGTGTTTGCTaGCTCCACCCCAGCTTTCTCTGGCCATTTCAGTTC +
Preference number: 3 (lower is better)
Translates to: VFAGCDHRQGVC*LHPSFLWPFQF
Trigger: GAACTGAAATGGCCAGAGAAAGCTGGGGTGGAGCCAGCAAACACCCTGCCGGTGGTCACAGCCAGCAAACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp CTGGAGAAAGCCTCAGGAACAGGGCAGCGTAGGGTATaGGGTGAGATCTCCCGTTACGCCTTCACCAGAGGA +
Preference number: 3 (lower is better)
Translates to: LEKASGTGQRRV*GEISRYAFTRG
Trigger: TCCTCTGGTGAAGGCGTAACGGGAGATCTCACCCCATACCCTACGCTGCCCTGTTCCTGAGGCTTTCTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp CCAACATCACAGGATCGAGGGCGCCCAGACAGGGACTaGATCTCCTTGCTCTCCCACAGGTGTTTAGGCAGT +
Preference number: 3 (lower is better)
Translates to: PTSQDRGRPDRD*ISLLSHRCLGS
Trigger: ACTGCCTAAACACCTGTGGGAGAGCAAGGAGATCCAGTCCCTGTCTGGGCGCCCTCGATCCTGTGATGTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR CCA 72 bp TTCAGGGTGCCCAGGAACGGTGAGAGGCCTGTGTTCTaGCCATTATGTGGGAAAGCATTGCCGCCCCCAACA +
Preference number: 3 (lower is better)
Translates to: FRVPRNGERPVF*PLCGKALPPPT
Trigger: TGTTGGGGGCGGCAATGCTTTCCCACATAATGGCCAGAACACAGGCCTCTCACCGTTCCTGGGCACCCTGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR CCA 72 bp TTTAGTTTCCAATTAAACAGCAGAGACTGGGGCACGTaGCCGCACAGCTCCACCCGGCTGTCTGAAGAGCCG +
Preference number: 3 (lower is better)
Translates to: FSFQLNSRDWGT*PHSSTRLSEEP
Trigger: CGGCTCTTCAGACAGCCGGGTGGAGCTGTGCGGCCACGTGCCCCAGTCTCTGCTGTTTAATTGGAAACTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp AGAGGAGGTTCTTATCCCCAGGTGAGTCATGGCAGCTaGAAGGTTGCCCACGCTGTTCCCCACACTCATGCT +
Preference number: 3 (lower is better)
Translates to: RGGSYPQVSHGS*KVAHAVPHTHA
Trigger: AGCATGAGTGTGGGGAACAGCGTGGGCAACCTTCCAGCTGCCATGACTCACCTGGGGATAAGAACCTCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR-3UTR CAA 90 bp CAGCTGGAAGGTTGCCCACGCTGTTCCCCACACTCATGCTACCAAAGAGGTGGTAGGGACTGGATCTCCTaGCTCTCCCACAGGTGTTTA +
Preference number: 3 (lower is better)
Translates to: QLEGCPRCSPHSCYQRGGRDWIS*LSHRCL
Trigger: TAAACACCTGTGGGAGAGCAAGGAGATCCAGTCCCT...ACCACCTCTTTGGTAGCATGAGTGTGGGGAACAGCGTGGGCAACCTTCCAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR TCA 72 bp CTATGCTGTAACCACCGTCAAGGTGTTTGCTGGCTGTaGCCACTGTCAGGGTGTTTGCTGGCTGTGACCACC +
Preference number: 3 (lower is better)
Translates to: LCCNHRQGVCWL*PLSGCLLAVTT
Trigger: GGTGGTCACAGCCAGCAAACACCCTGACAGTGGTCACAGCCAGCAAACACCTTGACGGTGGTTACAGCATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CAA 90 bp GTGGCTTGGATGGAAGGGTTACTTCGAGAACTTTGGAGACCAGAGGAGGTTCTTATGGCAGCTGGAAGGTaGCCCACGCTGTTCCCCACA +
Preference number: 3 (lower is better)
Translates to: VAWMEGLLRELWRPEEVLMAAGR*PTLFPT
Trigger: TGTGGGGAACAGCGTGGGCAACCTTCCAGCTGCCAT...AAGAACCTCCTCTGGTCTCCAAAGTTCTCGAAGTAACCCTTCCATCCAAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR TCA 72 bp GCCCTGGGACGGCTGGGTAAGCTTCTTCATTTTAAGTaGGCCATTGGACAGAGTGATGGCTGGGCCCAGAAT +
Preference number: 3 (lower is better)
Translates to: ALGRLGKLLHFK*AIGQSDGWAQN
Trigger: ATTCTGGGCCCAGCCATCACTCTGTCCAATGGCTCACTTAAAATGAAGAAGCTTACCCAGCCGTCCCAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp TCAGTGAGCAAACAGGTCTCCCTCTCCTCCTGTCTGTaGGGGAAAGGTGCGCATACAGGAAGCAGCAGCAAA +
Preference number: 3 (lower is better)
Translates to: SVSKQVSLSSCL*GKGAHTGSSSK
Trigger: TTTGCTGCTGCTTCCTGTATGCGCACCTTTCCCTCACAGACAGGAGGAGAGGGAGACCTGTTTGCTCACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp AGTGTGTATGCTGGGGCGCTGGGCAGCTCAGAGGAGTaGAAAGCTTCCACTTTAACTAAAGTCACCCCGGGT +
Preference number: 3 (lower is better)
Translates to: SVYAGALGSSEE*KASTLTKVTPG
Trigger: ACCCGGGGTGACTTTAGTTAAAGTGGAAGCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp CCCCTTCCTCTCAACTTTTACATCAGCATCGATCTCTaGCTGAAGACGGACACGGGAGCTGGCTTGAGTGTG +
Preference number: 3 (lower is better)
Translates to: PLPLNFYISIDL*LKTDTGAGLSV
Trigger: CACACTCAAGCCAGCTCCCGTGTCCGTCTTCAGGCAGAGATCGATGCTGATGTAAAAGTTGAGAGGAAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp CTGACTAGCTGCTGGGATGGCCCCGTTCTGGAGCAGTaGGAACACTGGGAACCATCTGTGCATAAATCAGAA +
Preference number: 3 (lower is better)
Translates to: LTSCWDGPVLEQ*EHWEPSVHKSE
Trigger: TTCTGATTTATGCACAGATGGTTCCCAGTGTTCCCACTGCTCCAGAACGGGGCCATCCCAGCAGCTAGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CAA 90 bp AGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGTGCTAAAACCCACCACCCTCAAACTGCCTTCAGTTaGCCTAACTTAAGCCTGCCC +
Preference number: 3 (lower is better)
Translates to: RRAHPHFSPHSCAKTHHPQTAFS*PNLSLP
Trigger: GGGCAGGCTTAAGTTAGGCAAACTGAAGGCAGTTTG...AGGGTGGTGGGTTTTAGCACACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp CCTAGTGTTAAGGCACACTCAAGTGAGTCTGAAAGGTaGAGCTCTGAGCTAAGGCAGGGGACAGAGAGAGCT +
Preference number: 3 (lower is better)
Translates to: PSVKAHSSESER*SSELRQGTERA
Trigger: AGCTCTCTCTGTCCCCTGCCTTAGCTCAGAGCTTCACCTTTCAGACTCACTTGAGTGTGCCTTAACACTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp ACAGGTCTCCCTCTCCTCCTGTCTGTGAGGGAAAGGTaGGCATACAGGAAGCAGCAGCAAAGAGATCATAAA +
Preference number: 3 (lower is better)
Translates to: TGLPLLLSVRER*AYRKQQQRDHK
Trigger: TTTATGATCTCTTTGCTGCTGCTTCCTGTATGCGCACCTTTCCCTCACAGACAGGAGGAGAGGGAGACCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp CCACGGATCAGGCTCAACGCAGAGAGCAGATTGTGCTaGAAACCCCTTCCTCTCAACTTTTACATCAGCATC +
Preference number: 3 (lower is better)
Translates to: PRIRLNAESRLC*KPLPLNFYISI
Trigger: GATGCTGATGTAAAAGTTGAGAGGAAGGGGTTTCCAGCACAATCTGCTCTCTGCGTTGAGCCTGATCCGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR-3UTR CAA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGGGTGCTCTGGTACCGTaGTGTGACACTGAGCCAACT +
Preference number: 3 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTGALVP*CDTEPT
Trigger: AGTTGGCTCAGTGTCACACAACGGTACCAGAGCACC...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp CAAACTGCCTTCAGTTTGCCTAACTTAAGCCTGCCCTaGGACGGCTGGGTAAGCTTCTTCATTTTAAGTGAG +
Preference number: 3 (lower is better)
Translates to: QTAFSLPNLSLP*DGWVSFFILSE
Trigger: CTCACTTAAAATGAAGAAGCTTACCCAGCCGTCCCAGGGCAGGCTTAAGTTAGGCAAACTGAAGGCAGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp ACCGGTAGGCTCTCTAGTGGCTTAAAGCTACACACATaGAAAGATCAGGCTGATAGGCCTATGGGCAGATTT +
Preference number: 3 (lower is better)
Translates to: TGRLSSGLKLHT*KDQADRPMGRF
Trigger: AAATCTGCCCATAGGCCTATCAGCCTGATCTTTTCATGTGTGTAGCTTTAAGCCACTAGAGAGCCTACCGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp CCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATaGATACACGACCTCTCGGCCCAGAGAATATACAGT +
Preference number: 3 (lower is better)
Translates to: PNRKCLQICARA*IHDLSAQRIYS
Trigger: ACTGTATATTCTCTGGGCCGAGAGGTCGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR GCA 72 bp GGAAGCTACTTTATACAAAGTCCGATCTTTCAATATTaGTTAACAAAAGGCCGGGAGTTAGGACACTGGCCG +
Preference number: 3 (lower is better)
Translates to: GSYFIQSPIFQY*LTKGRELGHWP
Trigger: CGGCCAGTGTCCTAACTCCCGGCCTTTTGTTAAGCAATATTGAAAGATCGGACTTTGTATAAAGTAGCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR TCA 72 bp CTGACGTGTTACACAGCATTTTCTACATTTACACACTaGCTGACTGGATGGCCAATAAAGAGAATTAAGGGT +
Preference number: 3 (lower is better)
Translates to: LTCYTAFSTFTH*LTGWPIKRIKG
Trigger: ACCCTTAATTCTCTTTATTGGCCATCCAGTCAGTCAGTGTGTAAATGTAGAAAATGCTGTGTAACACGTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CCA 72 bp AGCTACACACATGAAAAGATCAGGCTGATAGGCCTATaGGCAGATTTAATTCAGTGCTACATTGTCTCTTTT +
Preference number: 3 (lower is better)
Translates to: SYTHEKIRLIGL*ADLIQCYIVSF
Trigger: AAAAGAGACAATGTAGCACTGAATTAAATCTGCCCATAGGCCTATCAGCCTGATCTTTTCATGTGTGTAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp CAGCAGCTCCTTCCAGTGGGCTGGAGGGTGGCAGGCCTAAGAGGGAGGGCATCTGGGCTGACTGGAGGCTaGCTGCGCCGAGAGGGGCCA +
Preference number: 4 (lower is better)
Translates to: QQLLPVGWRVAGLRGRASGLTGG*LRREGP
Trigger: TGGCCCCTCTCGGCGCAGGCAGCCTCCAGTCAGCCC...AGATGCCCTCCCTCTTAGGCCTGCCACCCTCCAGCCCACTGGAAGGAGCTGCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp CAGCAGCTCCTTCCAGTGGGCTGGAGGGTGGCAGGCCTAAGAGGGAGGGCATCTTCCTCGGCCTGCCGCTaGGTGTGCAGGGCGATCTTC +
Preference number: 4 (lower is better)
Translates to: QQLLPVGWRVAGLRGRASSSACR*VCRAIF
Trigger: GAAGATCGCCCTGCACACGCAGCGGCAGGCCGAGGA...AGATGCCCTCCCTCTTAGGCCTGCCACCCTCCAGCCCACTGGAAGGAGCTGCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp GCCTTGATGTGCTTCAGGGCCAGGAGAGAGCGTGAGAGGGCTGACTGGAGGCTGAGCCGGAGGGAGGGGTaGAGAGCAGAGGCGTTGGCC +
Preference number: 4 (lower is better)
Translates to: ALMCFRARRERERADWRLSRREG*RAEALA
Trigger: GGCCAACGCCTCTGCTCTGCACCCCTCCCTCCGGCT...CAGCCTCCAGTCAGCCCTCTCACGCTCTCTCCTGGCCCTGAAGCACATCAAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
CDS-3UTR GCA 90 bp CAGCAGCTCCTTCCAGTGGGCTGGAGGGTGGCAGGCCTAAGAGGGAGGGCATCTCTCCGGTGTTCAGGGTaGCCAGGAACGGTGAGAGGC +
Preference number: 4 (lower is better)
Translates to: QQLLPVGWRVAGLRGRASLRCSG*PGTVRG
Trigger: GCCTCTCACCGTTCCTGGGCACCCTGAACACCGGAG...AGATGCCCTCCCTCTTAGGCCTGCCACCCTCCAGCCCACTGGAAGGAGCTGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp AGGGTGGCAGGCCTAAGAGGGAGGGCATCTTGTGCAGGTGACACACCTGTAGCCAGCCGGAGGGAGGGGTaGAGAGCAGAGGCGTTGGCC +
Preference number: 4 (lower is better)
Translates to: RVAGLRGRASCAGDTPVASRREG*RAEALA
Trigger: GGCCAACGCCTCTGCTCTGCACCCCTCCCTCCGGCT...GGCTACAGGTGTGTCACCTGCACAAGATGCCCTCCCTCTTAGGCCTGCCACCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 72 bp CATGGGCCGAAGAGTGCAGCTGTGTCTAGCAAAGCCTaGGCTGAGCTCAGTGGAGAGCCCGGGGCAGCGGCT +
Preference number: 4 (lower is better)
Translates to: HGPKSAAVSSKA*AELSGEPGAAA
Trigger: AGCCGCTGCCCCGGGCTCTCCACTGAGCTCAGCCAAGGCTTTGCTAGACACAGCTGCACTCTTCGGCCCATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 72 bp GCCCAGAATACCCGCCAGCTGGAGGGCTGCCTGGCCTaGGCGGTCAGACAGAAAGGCATCATGGTGCTCTGG +
Preference number: 4 (lower is better)
Translates to: AQNTRQLEGCLA*AVRQKGIMVLW
Trigger: CCAGAGCACCATGATGCCTTTCTGTCTGACCGCCAAGGCCAGGCAGCCCTCCAGCTGGCGGGTATTCTGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTTGGGGCAGGCCAGGCTaGCTGGCCTCCTCCTCCATA +
Preference number: 4 (lower is better)
Translates to: GGREQGKGELILTSPHTRWGRPG*LASSSI
Trigger: TATGGAGGAGGAGGCCAGTCAGCCTGGCCTGCCCCA...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp TGTCACCTCACACCTGCCTCTTCCCCGGTGTGTGGGCGTCACCGACACGATGATGGTGCCCAGGAACGGTaGGAGGCCTGTGTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: CHLTPASSPVCGRHRHDDGAQER*EACVLA
Trigger: GGCCAGAACACAGGCCTCTCACCGTTCCTGGGCACC...ATCATCGTGTCGGTGACGCCCACACACCGGGGAAGAGGCAGGTGTGAGGTGACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp GAGCGTCTGTGGGCAGGAAGGAAAGTGGGCTCTGCTCTGAGGTCACCATCTGGGGCTGCGGGTGGCACTTaGGGGACGAGGAGAGTGCCA +
Preference number: 4 (lower is better)
Translates to: ERLWAGRKVGSALRSPSGAAGGT*GTRRVP
Trigger: TGGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGC...CCCAGATGGTGACCTCAGAGCAGAGCCCACTTTCCTTCCTGCCCACAGACGCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
CDS-3UTR GCA 90 bp CCTGCAGCCAGCGCTTTCCCATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGAGGTCGGTCATGAGCTaGTCGAAGGCCCGCGTCTCC +
Preference number: 4 (lower is better)
Translates to: PAASAFPLAGESLRNRAARSVMS*SKARVS
Trigger: GGAGACGCGGGCCTTCGAGCAGCTCATGACCGACCT...CGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAATGGGAAAGCGCTGGCTGCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp AGGGTGGCAGGCCTAAGAGGGAGGGCATCTTGTGCAGGTGACACACCTGTAGCCCGTGAGAGGGCTGACTaGAGGCTGCCTGCGCCGAGA +
Preference number: 4 (lower is better)
Translates to: RVAGLRGRASCAGDTPVARERAD*RLPAPR
Trigger: TCTCGGCGCAGGCAGCCTCCAGTCAGCCCTCTCACG...GGCTACAGGTGTGTCACCTGCACAAGATGCCCTCCCTCTTAGGCCTGCCACCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp AGGGCTGCCTGGCCTTGGCGGTCAGACAGAAAGGCATCATGGTGCTCTGGTACCGGGGACACTTGGGCTTaGGCGTCTGTGGGCAGGAAG +
Preference number: 4 (lower is better)
Translates to: RAAWPWRSDRKASWCSGTGDTWA*ASVGRK
Trigger: CTTCCTGCCCACAGACGCTCAAGCCCAAGTGTCCCC...GGTACCAGAGCACCATGATGCCTTTCTGTCTGACCGCCAAGGCCAGGCAGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGCCTGCCGCTGCGTGTaGAGGGCGATCTTCTCACTG +
Preference number: 4 (lower is better)
Translates to: GGREQGKGELILTSPHTRACRCV*RAIFSL
Trigger: CAGTGAGAAGATCGCCCTGCACACGCAGCGGCAGGC...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp CGAGAGGAAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTGCCCCACACTTTGGCCACAGACGGCTaGGGGTGGCACTTGAGGGAC +
Preference number: 4 (lower is better)
Translates to: REEEFAVGAQSGCQVPHTLATDG*GWHLRD
Trigger: GTCCCTCAAGTGCCACCCGCAGCCGTCTGTGGCCAA...AGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTTCCTCTCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp CTGGGAGGCAGGATACGGGTTCAGTGGGCTGGTCGCAGAGAGCTGTCTGCTGAATTGGCCACAGACGGCTaGGGGTGGCACTTGAGGGAC +
Preference number: 4 (lower is better)
Translates to: LGGRIRVQWAGRRELSAELATDG*GWHLRD
Trigger: GTCCCTCAAGTGCCACCCGCAGCCGTCTGTGGCCAA...TTCAGCAGACAGCTCTCTGCGACCAGCCCACTGAACCCGTATCCTGCCTCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
CDS-3UTR GCA 90 bp CAGCAGCTCCTTCCAGTGGGCTGGAGGGTGGCAGGCCTAAGAGGGAGGGCATCTCTTCTGTCAGGATGGTaGCTGGGAAGCTGCCACAGC +
Preference number: 4 (lower is better)
Translates to: QQLLPVGWRVAGLRGRASLLSGW*LGSCHS
Trigger: GCTGTGGCAGCTTCCCAGGCACCATCCTGACAGAAG...AGATGCCCTCCCTCTTAGGCCTGCCACCCTCCAGCCCACTGGAAGGAGCTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp CCCCCAACATCACAGGATCGAGGGCGCCCAGACAGGGACTGGATCTCCTTGCTCAGGAGGCTGTTGCCGTaGCCAGCTCTCATCCAGGTG +
Preference number: 4 (lower is better)
Translates to: PPTSQDRGRPDRDWISLLRRLLP*PALIQV
Trigger: CACCTGGATGAGAGCTGGCCACGGCAACAGCCTCCT...GAGCAAGGAGATCCAGTCCCTGTCTGGGCGCCCTCGATCCTGTGATGTTGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
3UTR CAA 72 bp GCAGAGGCGTTGGCCACAGACGGCTGCGGGTGGCACTaGAGGGACGAGGAGAGTGCCATCTTACTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: AEALATDGCGWH*RDEESAILLSV
Trigger: CACACTCAGTAAGATGGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGCCGTCTGTGGCCAACGCCTCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
CDS-3UTR TCA 90 bp CGAGAGGAAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTGCCCCACACTTGTCCATGTCCAGGCTaGCCTCTGGCATGCCCGACA +
Preference number: 4 (lower is better)
Translates to: REEEFAVGAQSGCQVPHTCPCPG*PLACPT
Trigger: TGTCGGGCATGCCAGAGGTCAGCCTGGACATGGACA...AGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTTCCTCTCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp AGGGCTGCCTGGCCTTGGCGGTCAGACAGAAAGGCATCATGGTGCTCTGGTACCGGTAAGGATCCCCCGTaGTACTGGGTAAGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: RAAWPWRSDRKASWCSGTGKDPP*YWVRRS
Trigger: GCTGCGCCTTACCCAGTACCACGGGGGATCCTTACC...GGTACCAGAGCACCATGATGCCTTTCTGTCTGACCGCCAAGGCCAGGCAGCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp GGCCTGCAGCAGTACAACTGGTGCCATGGGCCGAAGAGTGCAGCTGTGTCTAGCGCAGCTGGCTCACGTTaGGTAAGGATCCCCCGTGGT +
Preference number: 4 (lower is better)
Translates to: GLQQYNWCHGPKSAAVSSAAGSR*VRIPRG
Trigger: ACCACGGGGGATCCTTACCCAACGTGAGCCAGCTGC...GCTAGACACAGCTGCACTCTTCGGCCCATGGCACCAGTTGTACTGCTGCAGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp TGTCACCTCACACCTGCCTCTTCCCCGGTGTGTGGGCGTCACCGACACGATGATCTCTCCACCAGCCCATaGTGGCGGGTTCCACGAACA +
Preference number: 4 (lower is better)
Translates to: CHLTPASSPVCGRHRHDDLSTSP*WRVPRT
Trigger: TGTTCGTGGAACCCGCCACCATGGGCTGGTGGAGAG...ATCATCGTGTCGGTGACGCCCACACACCGGGGAAGAGGCAGGTGTGAGGTGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp AGGGTGGCAGGCCTAAGAGGGAGGGCATCTTGTGCAGGTGACACACCTGTAGCCGGGCTTGAGCGTCTGTaGGCAGGAAGGAAAGTGGGC +
Preference number: 4 (lower is better)
Translates to: RVAGLRGRASCAGDTPVAGLERL*AGRKVG
Trigger: GCCCACTTTCCTTCCTGCCCACAGACGCTCAAGCCC...GGCTACAGGTGTGTCACCTGCACAAGATGCCCTCCCTCTTAGGCCTGCCACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp ATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGTAGGGTATGGGGTGAGATCTGGGGGCTCCTGGGCATaGGGCTGCTGTAGGAGTGGC +
Preference number: 4 (lower is better)
Translates to: IGWRKPQEQGSVGYGVRSGGSWA*GCCRSG
Trigger: GCCACTCCTACAGCAGCCCCATGCCCAGGAGCCCCC...AGATCTCACCCCATACCCTACGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 72 bp CAGGCACAGATGGGTCAGCTTCCTTCTACTCCACCCTaGCTCTCCTGGGTGGGGACAGCCACTGAGCCTCAG +
Preference number: 4 (lower is better)
Translates to: QAQMGQLPSTPP*LSWVGTATEPQ
Trigger: CTGAGGCTCAGTGGCTGTCCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 72 bp ATCGATCTCTGCCTGAAGACGGACACGGGAGCTGGCTaGAGTGTGTATGCTGGGGCGCTGGGCAGCTCAGAG +
Preference number: 4 (lower is better)
Translates to: IDLCLKTDTGAG*SVYAGALGSSE
Trigger: CTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCTCCCGTGTCCGTCTTCAGGCAGAGATCGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp CCTGCAGCCAGCGCTTTCCCATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGATCGGCTTGATGAAGTaGTGGCTGGAACTCTGGCGC +
Preference number: 4 (lower is better)
Translates to: PAASAFPLAGESLRNRAAIGLMK*WLELWR
Trigger: GCGCCAGAGTTCCAGCCATCACTTCATCAAGCCGAT...CGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAATGGGAAAGCGCTGGCTGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp CCTCTCCTCCTGTCTGTGAGGGAAAGGTGCGCATACAGGAAGCAGCAGCAAAGAGCTGCGGGTGGCACTTaGGGGACGAGGAGAGTGCCA +
Preference number: 4 (lower is better)
Translates to: PLLLSVRERCAYRKQQQRAAGGT*GTRRVP
Trigger: TGGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGC...TCTTTGCTGCTGCTTCCTGTATGCGCACCTTTCCCTCACAGACAGGAGGAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp CAGCAGCTCCTTCCAGTGGGCTGGAGGGTGGCAGGCCTAAGAGGGAGGGCATCTTGTTCCCCACACTCATaGTACCAAAGAGGTGGTCGC +
Preference number: 4 (lower is better)
Translates to: QQLLPVGWRVAGLRGRASCSPHS*YQRGGR
Trigger: GCGACCACCTCTTTGGTAGCATGAGTGTGGGGAACA...AGATGCCCTCCCTCTTAGGCCTGCCACCCTCCAGCCCACTGGAAGGAGCTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGGTTCTCGGTGGCTCTaGTGTACCAAAGGCACCTGC +
Preference number: 4 (lower is better)
Translates to: GGREQGKGELILTSPHTRGSRWL*CTKGTC
Trigger: GCAGGTGCCTTTGGTACAGCAGAGCCACCGAGAACC...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp CCTGCAGCCAGCGCTTTCCCATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGGGTCCAGCAGGCCCATaGTGGAGTCACTTAGCATGT +
Preference number: 4 (lower is better)
Translates to: PAASAFPLAGESLRNRAAGPAGP*WSHLAC
Trigger: ACATGCTAAGTGACTCCAGCATGGGCCTGCTGGACC...CGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAATGGGAAAGCGCTGGCTGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp AGGGCTGCCTGGCCTTGGCGGTCAGACAGAAAGGCATCATGGTGCTCTGGTACCTGTCAGGATGGTGCCTaGGAAGCTGCCACAGCTGGA +
Preference number: 4 (lower is better)
Translates to: RAAWPWRSDRKASWCSGTCQDGA*EAATAG
Trigger: TCCAGCTGTGGCAGCTTCCCAGGCACCATCCTGACA...GGTACCAGAGCACCATGATGCCTTTCTGTCTGACCGCCAAGGCCAGGCAGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp AGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGTGCTAAAACCCACCACCCTGGGCGATCTTCTCACTaGACTTCCGCGGGTTGGCGC +
Preference number: 4 (lower is better)
Translates to: RRAHPHFSPHSCAKTHHPGRSSH*TSAGWR
Trigger: GCGCCAACCCGCGGAAGTTCAGTGAGAAGATCGCCC...AGGGTGGTGGGTTTTAGCACACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp CGAGAGGAAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTGCCCCACACTTGTCTGCTGAAGCCTTaGTGTGCTTCAGGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: REEEFAVGAQSGCQVPHTCLLKP*CASGPG
Trigger: TCCTGGCCCTGAAGCACATCAAGGCTTCAGCAGACA...AGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTTCCTCTCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp AGGGTGGCAGGCCTAAGAGGGAGGGCATCTTGTGCAGGTGACACACCTGTAGCCGGTCCTGGGGTTTGGTaGTCAGAGCACTCGTGTGAA +
Preference number: 4 (lower is better)
Translates to: RVAGLRGRASCAGDTPVAGPGVW*SEHSCE
Trigger: TTCACACGAGTGCTCTGAGCACCAAACCCCAGGACC...GGCTACAGGTGTGTCACCTGCACAAGATGCCCTCCCTCTTAGGCCTGCCACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp GGCCTGCAGCAGTACAACTGGTGCCATGGGCCGAAGAGTGCAGCTGTGTCTAGCGCTGAAGCCTTGATGTaGTTCAGGGCCAGGAGAGAG +
Preference number: 4 (lower is better)
Translates to: GLQQYNWCHGPKSAAVSSAEALM*FRARRE
Trigger: CTCTCTCCTGGCCCTGAAGCACATCAAGGCTTCAGC...GCTAGACACAGCTGCACTCTTCGGCCCATGGCACCAGTTGTACTGCTGCAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp CAGGCACAGATGGGTCAGCTTCCTTCTACTCCACCCTTGCTCTCCTGGGTGGGGTGGTGCCTGGGAAGCTaGCACAGCTGGAATATGGGT +
Preference number: 4 (lower is better)
Translates to: QAQMGQLPSTPPLLSWVGWCLGS*HSWNMG
Trigger: ACCCATATTCCAGCTGTGGCAGCTTCCCAGGCACCA...CCCCACCCAGGAGAGCAAGGGTGGAGTAGAAGGAAGCTGACCCATCTGTGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp AGGGCTGCCTGGCCTTGGCGGTCAGACAGAAAGGCATCATGGTGCTCTGGTACCCTCAAGGGTTCGATCTaGAGCTCCTCTTCCAGAGGG +
Preference number: 4 (lower is better)
Translates to: RAAWPWRSDRKASWCSGTLKGSI*SSSSRG
Trigger: CCCTCTGGAAGAGGAGCTGCAGATCGAACCCTTGAG...GGTACCAGAGCACCATGATGCCTTTCTGTCTGACCGCCAAGGCCAGGCAGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp TGTCACCTCACACCTGCCTCTTCCCCGGTGTGTGGGCGTCACCGACACGATGATTCCACCAGCCCATGGTaGCGGGTTCCACGAACATTA +
Preference number: 4 (lower is better)
Translates to: CHLTPASSPVCGRHRHDDSTSPW*RVPRTL
Trigger: TAATGTTCGTGGAACCCGCCACCATGGGCTGGTGGA...ATCATCGTGTCGGTGACGCCCACACACCGGGGAAGAGGCAGGTGTGAGGTGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp GCCAGGTGCCCCACACTCCTGGGGCTTGGTGTGATCAGCCATGCTGGATGCACTATCAAACTGTCTCCCTaGCTTGTCCCCAGACCTTCG +
Preference number: 4 (lower is better)
Translates to: ARCPTLLGLGVISHAGCTIKLSP*LVPRPS
Trigger: CGAAGGTCTGGGGACAAGCCAGGGAGACAGTTTGAT...AGTGCATCCAGCATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp CGAGAGGAAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTGCCCCACACTGGCCACTCAGGTTTGTaGTGGAAAGAGACGGGTTGC +
Preference number: 4 (lower is better)
Translates to: REEEFAVGAQSGCQVPHTGHSGL*WKETGC
Trigger: GCAACCCGTCTCTTTCCACCACAAACCTGAGTGGCC...AGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTTCCTCTCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp CACCGGCAGGGTGTTTGCTGGCTCCACCCCAGCTTTCTCTGGCCATTTCAGTTCTGGGCAGTGAGGAGCTaGAAGTCTGACTGTGGCAGG +
Preference number: 4 (lower is better)
Translates to: HRQGVCWLHPSFLWPFQFWAVRS*KSDCGR
Trigger: CCTGCCACAGTCAGACTTCCAGCTCCTCACTGCCCA...GAACTGAAATGGCCAGAGAAAGCTGGGGTGGAGCCAGCAAACACCCTGCCGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp AGCTGGCTTGAGTGTGTATGCTGGGGCGCTGGGCAGCTCAGAGGAGTGAAAAGCCATCCGGGAAGAAGCTaGTCAAAGCTGAGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: SWLECVCWGAGQLRGVKSHPGRS*SKLSPG
Trigger: CCCAGGGCTCAGCTTTGACCAGCTTCTTCCCGGATG...GCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp CACGATGATCCCACGGATCAGGCTCAACGCAGAGAGCAGATTGTGCTGGAAACCGAGGAAAGGCAGGGCTaGGCCTCATGGGCTGTTGGT +
Preference number: 4 (lower is better)
Translates to: HDDPTDQAQRREQIVLETEERQG*ASWAVG
Trigger: ACCAACAGCCCATGAGGCCCAGCCCTGCCTTTCCTC...GGTTTCCAGCACAATCTGCTCTCTGCGTTGAGCCTGATCCGTGGGATCATCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp AGGGCTGCCTGGCCTTGGCGGTCAGACAGAAAGGCATCATGGTGCTCTGGTACCCTCATCCAGGTGCTGTaGAGAATAACTGGCTGCGAA +
Preference number: 4 (lower is better)
Translates to: RAAWPWRSDRKASWCSGTLIQVL*RITGCE
Trigger: TTCGCAGCCAGTTATTCTTCACAGCACCTGGATGAG...GGTACCAGAGCACCATGATGCCTTTCTGTCTGACCGCCAAGGCCAGGCAGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp ATGTGGGAAAGCATTGCCGCCCCCAACATCACAGGATCGAGGGCGCCCAGACAGCTCATCCAGGTGCTGTaGAGAATAACTGGCTGCGAA +
Preference number: 4 (lower is better)
Translates to: MWESIAAPNITGSRAPRQLIQVL*RITGCE
Trigger: TTCGCAGCCAGTTATTCTTCACAGCACCTGGATGAG...CTGTCTGGGCGCCCTCGATCCTGTGATGTTGGGGGCGGCAATGCTTTCCCACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
CDS-3UTR TCA 90 bp CCCCCAACATCACAGGATCGAGGGCGCCCAGACAGGGACTGGATCTCCTTGCTCGTGCAGATGTTAGCCTaGATCCAGGATGCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: PPTSQDRGRPDRDWISLLVQMLA*IQDASL
Trigger: AAGAGAAGCATCCTGGATTCAGGCTAACATCTGCAC...GAGCAAGGAGATCCAGTCCCTGTCTGGGCGCCCTCGATCCTGTGATGTTGGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
CDS-3UTR CCA 90 bp ATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGTAGGGTATGGGGTGAGATCTAGGATACGGGTTCAGTaGGCTGGTCGCAGAGAGCTG +
Preference number: 4 (lower is better)
Translates to: IGWRKPQEQGSVGYGVRSRIRVQ*AGRREL
Trigger: CAGCTCTCTGCGACCAGCCCACTGAACCCGTATCCT...AGATCTCACCCCATACCCTACGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp GGCCTGCAGCAGTACAACTGGTGCCATGGGCCGAAGAGTGCAGCTGTGTCTAGCCTCAGAGCACTCGTGTaGAGAGCAGAATCAGAATTG +
Preference number: 4 (lower is better)
Translates to: GLQQYNWCHGPKSAAVSSLRALV*RAESEL
Trigger: CAATTCTGATTCTGCTCTTCACACGAGTGCTCTGAG...GCTAGACACAGCTGCACTCTTCGGCCCATGGCACCAGTTGTACTGCTGCAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp GCCAGGTGCCCCACACTCCTGGGGCTTGGTGTGATCAGCCATGCTGGATGCACTAGCCTGAATCCAGGATaGTTCTCTTCTTTCCAAGGA +
Preference number: 4 (lower is better)
Translates to: ARCPTLLGLGVISHAGCTSLNPG*FSSFQG
Trigger: TCCTTGGAAAGAAGAGAAGCATCCTGGATTCAGGCT...AGTGCATCCAGCATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp CACCGGCAGGGTGTTTGCTGGCTCCACCCCAGCTTTCTCTGGCCATTTCAGTTCGAGAGGCCTGTGTTCTaGCCATTATGTGGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: HRQGVCWLHPSFLWPFQFERPVF*PLCGKA
Trigger: TGCTTTCCCACATAATGGCCAGAACACAGGCCTCTC...GAACTGAAATGGCCAGAGAAAGCTGGGGTGGAGCCAGCAAACACCCTGCCGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp AGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGTGCTAAAACCCACCACCCTATGCTACCAAAGAGGTaGTCGCTGGTGTCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: RRAHPHFSPHSCAKTHHPMLPKR*SLVSRE
Trigger: CTCCCTGGACACCAGCGACCACCTCTTTGGTAGCAT...AGGGTGGTGGGTTTTAGCACACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGGAGGAGCTGGAAGTCTaGCTGTGGCAGGGAGGGGGC +
Preference number: 4 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTEELEV*LWQGGG
Trigger: GCCCCCTCCCTGCCACAGTCAGACTTCCAGCTCCTC...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp GCTGATGGGAATCTGAGGTTTGGAGCACTGACGTGTTACACAGCATTTTCTACAGAAGCGGTTCCGGGCTaGCCTCTCCACCAGCCCATG +
Preference number: 4 (lower is better)
Translates to: ADGNLRFGALTCYTAFSTEAVPG*PLHQPM
Trigger: CATGGGCTGGTGGAGAGGCCAGCCCGGAACCGCTTC...TGTAGAAAATGCTGTGTAACACGTCAGTGCTCCAAACCTCAGATTCCCATCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp CCTGCAGCCAGCGCTTTCCCATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGTTACTTCGAGAACTTTaGAGACCAGAGGAGGTTCTT +
Preference number: 4 (lower is better)
Translates to: PAASAFPLAGESLRNRAALLREL*RPEEVL
Trigger: AAGAACCTCCTCTGGTCTCCAAAGTTCTCGAAGTAA...CGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAATGGGAAAGCGCTGGCTGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 72 bp GACGGCTGGGTAAGCTTCTTCATTTTAAGTGAGCCATaGGACAGAGTGATGGCTGGGCCCAGAATACCCGCC +
Preference number: 4 (lower is better)
Translates to: DGWVSFFILSEP*DRVMAGPRIPA
Trigger: GGCGGGTATTCTGGGCCCAGCCATCACTCTGTCCAATGGCTCACTTAAAATGAAGAAGCTTACCCAGCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp GCTGATGGGAATCTGAGGTTTGGAGCACTGACGTGTTACACAGCATTTTCTACATCCCCAGACCTTCGGTaGAGGGGGTGGAAGCGGTTC +
Preference number: 4 (lower is better)
Translates to: ADGNLRFGALTCYTAFSTSPDLR*RGWKRF
Trigger: GAACCGCTTCCACCCCCTTCACCGAAGGTCTGGGGA...TGTAGAAAATGCTGTGTAACACGTCAGTGCTCCAAACCTCAGATTCCCATCAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp GCTGATGGGAATCTGAGGTTTGGAGCACTGACGTGTTACACAGCATTTTCTACATGCTGTAGGAGTGGCTaGGGCAGCTCCTGGGGTGTG +
Preference number: 4 (lower is better)
Translates to: ADGNLRFGALTCYTAFSTCCRSG*GSSWGV
Trigger: CACACCCCAGGAGCTGCCTCAGCCACTCCTACAGCA...TGTAGAAAATGCTGTGTAACACGTCAGTGCTCCAAACCTCAGATTCCCATCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp GCTGATGGGAATCTGAGGTTTGGAGCACTGACGTGTTACACAGCATTTTCTACACTGAGCCCTGGGCAGTaGGGAGCTGGAAGTCTGACT +
Preference number: 4 (lower is better)
Translates to: ADGNLRFGALTCYTAFSTLSPGQ*GAGSLT
Trigger: AGTCAGACTTCCAGCTCCTCACTGCCCAGGGCTCAG...TGTAGAAAATGCTGTGTAACACGTCAGTGCTCCAAACCTCAGATTCCCATCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR GCA 90 bp CAGCTGGAAGGTTGCCCACGCTGTTCCCCACACTCATGCTACCAAAGAGGTGGTAGCCTGAATCCAGGATaGTTCTCTTCTTTCCAAGGA +
Preference number: 4 (lower is better)
Translates to: QLEGCPRCSPHSCYQRGGSLNPG*FSSFQG
Trigger: TCCTTGGAAAGAAGAGAAGCATCCTGGATTCAGGCT...ACCACCTCTTTGGTAGCATGAGTGTGGGGAACAGCGTGGGCAACCTTCCAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
CDS-3UTR CCA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGAGGAGGCTGTTGCCGTaGCCAGCTCTCATCCAGGTG +
Preference number: 4 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTRRLLP*PALIQV
Trigger: CACCTGGATGAGAGCTGGCCACGGCAACAGCCTCCT...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGCAAAGAGGTGGTCGCTaGTGTCCAGGGAGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTQRGGR*CPGRLA
Trigger: TGCCAGCCTCCCTGGACACCAGCGACCACCTCTTTG...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp AGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGTGCTAAAACCCACCACCCTGCCACAGCTGGAATATaGGTTTGGTCTCAAGTGGAA +
Preference number: 4 (lower is better)
Translates to: RRAHPHFSPHSCAKTHHPATAGI*VWSQVE
Trigger: TTCCACTTGAGACCAAACCCATATTCCAGCTGTGGC...AGGGTGGTGGGTTTTAGCACACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp GCTGATGGGAATCTGAGGTTTGGAGCACTGACGTGTTACACAGCATTTTCTACAAGGGGTCCTGGGGTTTaGTGCTCAGAGCACTCGTGT +
Preference number: 4 (lower is better)
Translates to: ADGNLRFGALTCYTAFSTRGPGV*CSEHSC
Trigger: ACACGAGTGCTCTGAGCACCAAACCCCAGGACCCCT...TGTAGAAAATGCTGTGTAACACGTCAGTGCTCCAAACCTCAGATTCCCATCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 72 bp GAGTGTGGCTTGGATGGAAGGGTTACTTCGAGAACTTaGGAGACCAGAGGAGGTTCTTATCCCCAGGTGAGT +
Preference number: 4 (lower is better)
Translates to: ECGLDGRVTSRT*ETRGGSYPQVS
Trigger: ACTCACCTGGGGATAAGAACCTCCTCTGGTCTCCAAAGTTCTCGAAGTAACCCTTCCATCCAAGCCACACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
CDS-3UTR TCA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGCAGAGAGCTGTCTGCTaGAGCCTTGATGTGCTTCAG +
Preference number: 4 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTQRAVC*SLDVLQ
Trigger: CTGAAGCACATCAAGGCTTCAGCAGACAGCTCTCTG...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp GCTGATGGGAATCTGAGGTTTGGAGCACTGACGTGTTACACAGCATTTTCTACATATCTTCTGTCAGGATaGTGCCTGGGAAGCTGCCAC +
Preference number: 4 (lower is better)
Translates to: ADGNLRFGALTCYTAFSTYLLSG*CLGSCH
Trigger: GTGGCAGCTTCCCAGGCACCATCCTGACAGAAGATA...TGTAGAAAATGCTGTGTAACACGTCAGTGCTCCAAACCTCAGATTCCCATCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR TCA 90 bp GCTGATGGGAATCTGAGGTTTGGAGCACTGACGTGTTACACAGCATTTTCTACAGTGCAGATGTTAGCCTaGATCCAGGATGCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: ADGNLRFGALTCYTAFSTVQMLA*IQDASL
Trigger: AAGAGAAGCATCCTGGATTCAGGCTAACATCTGCAC...TGTAGAAAATGCTGTGTAACACGTCAGTGCTCCAAACCTCAGATTCCCATCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CCA 90 bp GCTGATGGGAATCTGAGGTTTGGAGCACTGACGTGTTACACAGCATTTTCTACACTGAGTAGTGGAGGTTaGTTAGATCTGGTAACGACC +
Preference number: 4 (lower is better)
Translates to: ADGNLRFGALTCYTAFSTLSSGG*LDLVTT
Trigger: GGTCGTTACCAGATCTAACCAACCTCCACTACTCAG...TGTAGAAAATGCTGTGTAACACGTCAGTGCTCCAAACCTCAGATTCCCATCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
3UTR CAA 72 bp TGGAAGCTACTTTATACAAAGTCCGATCTTTCAATATaGCTTAACAAAAGGCCGGGAGTTAGGACACTGGCC +
Preference number: 4 (lower is better)
Translates to: WKLLYTKSDLSI*LNKRPGVRTLA
Trigger: GGCCAGTGTCCTAACTCCCGGCCTTTTGTTAAGCAATATTGAAAGATCGGACTTTGTATAAAGTAGCTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp TCAGGGCCAGGAGAGAGCGTGAGAGGGCTGACTGGAGGCTGCCTGCGCCGAGAGGGCTGCGGGTGGCACTaGAGGGACGAGGAGAGTGCC +
Preference number: 5 (lower is better)
Translates to: SGPGESVRGLTGGCLRREGCGWH*RDEESA
Trigger: GGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGCC...CTCTCGGCGCAGGCAGCCTCCAGTCAGCCCTCTCACGCTCTCTCCTGGCCCTGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
CDS-3UTR CAA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTCTGAACTTCCGCGGGTaGGCGCTGCCCGAACCGGGC +
Preference number: 5 (lower is better)
Translates to: GGREQGKGELILTSPHTRLNFRG*ALPEPG
Trigger: GCCCGGTTCGGGCAGCGCCAACCCGCGGAAGTTCAG...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS GCA 90 bp AGCCGGAGGGAGGGGTGCAGAGCAGAGGCGTTGGCCACAGACGGCTaGGGGTGGCACTTGAGGGACGAGGAGAGTGCCATCTTACTGAGT +
Preference number: 5 (lower is better)
Translates to: SRREGCRAEALATDG*GWHLRDEESAILLS
Trigger: ACTCAGTAAGATGGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGCCGTCTGTGGCCAACGCCTCTGCTCTGCACCCCTCCCTCCGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000122255.8
ENSMUST00000149176.2
CDS CCA 90 bp GCCTTGATGTGCTTCAGGGCCAGGAGAGAGCGTGAGAGGGCTGACTaGAGGCTGCCTGCGCCGAGAGGGGCCACTCAGGTTTGTGGTGGA +
Preference number: 5 (lower is better)
Translates to: ALMCFRARRERERAD*RLPAPRGATQVCGG
Trigger: TCCACCACAAACCTGAGTGGCCCCTCTCGGCGCAGGCAGCCTCCAGTCAGCCCTCTCACGCTCTCTCCTGGCCCTGAAGCACATCAAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGGCTGCGGGTGGCACTaGAGGGACGAGGAGAGTGCC +
Preference number: 5 (lower is better)
Translates to: GGREQGKGELILTSPHTRGCGWH*RDEESA
Trigger: GGCACTCTCCTCGTCCCTCAAGTGCCACCCGCAGCC...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS TCA 90 bp GCATTCCCATCAAACTGTCTCCCTGGCTTGTCCCCAGACCTTCGGTaGAGGGGGTGGAAGCGGTTCCGGGCTGGCCTCTCCACCAGCCCA +
Preference number: 5 (lower is better)
Translates to: AFPSNCLPGLSPDLR*RGWKRFRAGLSTSP
Trigger: TGGGCTGGTGGAGAGGCCAGCCCGGAACCGCTTCCACCCCCTTCACCGAAGGTCTGGGGACAAGCCAGGGAGACAGTTTGATGGGAATGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS GCA 90 bp TGTGCTTCAGGGCCAGGAGAGAGCGTGAGAGGGCTGACTGGAGGCTaGCTGCGCCGAGAGGGGCCACTCAGGTTTGTGGTGGAAAGAGAC +
Preference number: 5 (lower is better)
Translates to: CASGPGESVRGLTGG*LRREGPLRFVVERD
Trigger: GTCTCTTTCCACCACAAACCTGAGTGGCCCCTCTCGGCGCAGGCAGCCTCCAGTCAGCCCTCTCACGCTCTCTCCTGGCCCTGAAGCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp AGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGTGCTAAAACCCACCACCCTCCTGGGGCTGCTGAGTaGGGGGCTCCTGGGCATGGG +
Preference number: 5 (lower is better)
Translates to: RRAHPHFSPHSCAKTHHPPGAAE*GAPGHG
Trigger: CCCATGCCCAGGAGCCCCCAACTCAGCAGCCCCAGG...AGGGTGGTGGGTTTTAGCACACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp GGGGGAAGGGAGCAGGGCAAAGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGGGCCTCATGGGCTGTaGGTCAAAGCGCACATCCGG +
Preference number: 5 (lower is better)
Translates to: GGREQGKGELILTSPHTRGPHGL*VKAHIR
Trigger: CCGGATGTGCGCTTTGACCAACAGCCCATGAGGCCC...ACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCTTTGCCCTGCTCCCTTCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CCA 90 bp TGGTCAAAGCGCACATCCGGGAAGAAGCTGGTCAAAGCTGAGCCCTaGGCAGTGAGGAGCTGGAAGTCTGACTGTGGCAGGGAGGGGGCT +
Preference number: 5 (lower is better)
Translates to: WSKRTSGKKLVKAEP*AVRSWKSDCGREGA
Trigger: AGCCCCCTCCCTGCCACAGTCAGACTTCCAGCTCCTCACTGCCCAGGGCTCAGCTTTGACCAGCTTCTTCCCGGATGTGCGCTTTGACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp GCCTTGATGTGCTTCAGGGCCAGGAGAGAGCGTGAGAGGGCTGACTGGAGGCTGGTGGAAAGAGACGGGTaGCTAAGGGAGAAGAGCCGG +
Preference number: 5 (lower is better)
Translates to: ALMCFRARRERERADWRLVERDG*LREKSR
Trigger: CCGGCTCTTCTCCCTTAGCAACCCGTCTCTTTCCAC...CAGCCTCCAGTCAGCCCTCTCACGCTCTCTCCTGGCCCTGAAGCACATCAAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
CDS-3UTR CAA 90 bp CACGATGATCCCACGGATCAGGCTCAACGCAGAGAGCAGATTGTGCTGGAAACCCGCAGCTGGCTCACGTaGGGTAAGGATCCCCCGTGG +
Preference number: 5 (lower is better)
Translates to: HDDPTDQAQRREQIVLETRSWLT*GKDPPW
Trigger: CCACGGGGGATCCTTACCCAACGTGAGCCAGCTGCG...GGTTTCCAGCACAATCTGCTCTCTGCGTTGAGCCTGATCCGTGGGATCATCGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp AGGGTGGCAGGCCTAAGAGGGAGGGCATCTTGTGCAGGTGACACACCTGTAGCCGTGGAAAGAGACGGGTaGCTAAGGGAGAAGAGCCGG +
Preference number: 5 (lower is better)
Translates to: RVAGLRGRASCAGDTPVAVERDG*LREKSR
Trigger: CCGGCTCTTCTCCCTTAGCAACCCGTCTCTTTCCAC...GGCTACAGGTGTGTCACCTGCACAAGATGCCCTCCCTCTTAGGCCTGCCACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp ACGCTGTTCCCCACACTCATGCTACCAAAGAGGTGGTCGCTGGTGTCCAGGGAGTTTCCAAGGAGGCTGTaGCCGTGGCCAGCTCTCATC +
Preference number: 5 (lower is better)
Translates to: TLFPTLMLPKRWSLVSREFPRRL*PWPALI
Trigger: GATGAGAGCTGGCCACGGCAACAGCCTCCTTGGAAA...CTCCCTGGACACCAGCGACCACCTCTTTGGTAGCATGAGTGTGGGGAACAGCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
CDS TCA 90 bp CCACAGAGGGGTCCAGCAGGCCCATGCTGGAGTCACTTAGCATGTTaGGTCCATCGAGGCTCAAGGGTTCGATCTGCAGCTCCTCTTCCA +
Preference number: 5 (lower is better)
Translates to: PQRGPAGPCWSHLAC*VHRGSRVRSAAPLP
Trigger: TGGAAGAGGAGCTGCAGATCGAACCCTTGAGCCTCGATGGACTCAACATGCTAAGTGACTCCAGCATGGGCCTGCTGGACCCCTCTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp CGAGAGGAAGAATTTGCTGTGGGGGCCCAGTCTGGATGCCAGGTGCCCCACACTTTATGTGGGAAAGCATaGCCGCCCCCAACATCACAG +
Preference number: 5 (lower is better)
Translates to: REEEFAVGAQSGCQVPHTLCGKA*PPPTSQ
Trigger: CTGTGATGTTGGGGGCGGCAATGCTTTCCCACATAA...AGTGTGGGGCACCTGGCATCCAGACTGGGCCCCCACAGCAAATTCTTCCTCTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp ATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGTAGGGTATGGGGTGAGATCTATGGCAGCTGGAAGGTaGCCCACGCTGTTCCCCACA +
Preference number: 5 (lower is better)
Translates to: IGWRKPQEQGSVGYGVRSMAAGR*PTLFPT
Trigger: TGTGGGGAACAGCGTGGGCAACCTTCCAGCTGCCAT...AGATCTCACCCCATACCCTACGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp GCCAGGTGCCCCACACTCCTGGGGCTTGGTGTGATCAGCCATGCTGGATGCACTGAGTCACTTAGCATGTaGAGTCCATCGAGGCTCAAG +
Preference number: 5 (lower is better)
Translates to: ARCPTLLGLGVISHAGCTESLSM*SPSRLK
Trigger: CTTGAGCCTCGATGGACTCAACATGCTAAGTGACTC...AGTGCATCCAGCATGGCTGATCACACCAAGCCCCAGGAGTGTGGGGCACCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS GCA 90 bp GAGTCACTTAGCATGTTGAGTCCATCGAGGCTCAAGGGTTCGATCTaGAGCTCCTCTTCCAGAGGGAACGGGGTGTCCATGTCCAGGCTG +
Preference number: 5 (lower is better)
Translates to: ESLSMLSPSRLKGSI*SSSSRGNGVSMSRL
Trigger: CAGCCTGGACATGGACACCCCGTTCCCTCTGGAAGAGGAGCTGCAGATCGAACCCTTGAGCCTCGATGGACTCAACATGCTAAGTGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp CCTCTCCTCCTGTCTGTGAGGGAAAGGTGCGCATACAGGAAGCAGCAGCAAAGATTTCCAAGGAGGCTGTaGCCGTGGCCAGCTCTCATC +
Preference number: 5 (lower is better)
Translates to: PLLLSVRERCAYRKQQQRFPRRL*PWPALI
Trigger: GATGAGAGCTGGCCACGGCAACAGCCTCCTTGGAAA...TCTTTGCTGCTGCTTCCTGTATGCGCACCTTTCCCTCACAGACAGGAGGAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp GAAGCCTTGATGTGCTTCAGGGCCAGGAGAGAGCGTGAGAGGGCTGACTGGAGGCTTACTGAGTGTGGCTaGGATGGAAGGGTTACTTCG +
Preference number: 5 (lower is better)
Translates to: EALMCFRARRERERADWRLTECG*DGRVTS
Trigger: CGAAGTAACCCTTCCATCCAAGCCACACTCAGTAAG...CCTCCAGTCAGCCCTCTCACGCTCTCTCCTGGCCCTGAAGCACATCAAGGCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
CDS-3UTR CAA 90 bp AGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGTGCTAAAACCCACCACCCTAGGGGCCACTCAGGTTaGTGGTGGAAAGAGACGGGT +
Preference number: 5 (lower is better)
Translates to: RRAHPHFSPHSCAKTHHPRGHSG*WWKETG
Trigger: ACCCGTCTCTTTCCACCACAAACCTGAGTGGCCCCT...AGGGTGGTGGGTTTTAGCACACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp AGGAGAGCTCATCCTCACTTCTCCCCACACTCGTGTGCTAAAACCCACCACCCTCTGTCTGCTGAAGCCTaGATGTGCTTCAGGGCCAGG +
Preference number: 5 (lower is better)
Translates to: RRAHPHFSPHSCAKTHHPLSAEA*MCFRAR
Trigger: CCTGGCCCTGAAGCACATCAAGGCTTCAGCAGACAG...AGGGTGGTGGGTTTTAGCACACGAGTGTGGGGAGAAGTGAGGATGAGCTCTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CCA 90 bp GCTGTTGCCGTGGCCAGCTCTCATCCAGGTGCTGTGAAGAATAACTaGCTGCGAAAGCATTCCCATCAAACTGTCTCCCTGGCTTGTCCC +
Preference number: 5 (lower is better)
Translates to: AVAVASSHPGAVKNN*LRKHSHQTVSLACP
Trigger: GGGACAAGCCAGGGAGACAGTTTGATGGGAATGCTTTCGCAGCCAGTTATTCTTCACAGCACCTGGATGAGAGCTGGCCACGGCAACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp AGGGTGGCAGGCCTAAGAGGGAGGGCATCTTGTGCAGGTGACACACCTGTAGCCAGCTGGAATATGGGTTaGGTCTCAAGTGGAATGAGT +
Preference number: 5 (lower is better)
Translates to: RVAGLRGRASCAGDTPVASWNMG*VSSGMS
Trigger: ACTCATTCCACTTGAGACCAAACCCATATTCCAGCT...GGCTACAGGTGTGTCACCTGCACAAGATGCCCTCCCTCTTAGGCCTGCCACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS TCA 90 bp TTTCCAAGGAGGCTGTTGCCGTGGCCAGCTCTCATCCAGGTGCTGTaGAGAATAACTGGCTGCGAAAGCATTCCCATCAAACTGTCTCCC +
Preference number: 5 (lower is better)
Translates to: FPRRLLPWPALIQVL*RITGCESIPIKLSP
Trigger: GGGAGACAGTTTGATGGGAATGCTTTCGCAGCCAGTTATTCTTCACAGCACCTGGATGAGAGCTGGCCACGGCAACAGCCTCCTTGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp CCTCTCCTCCTGTCTGTGAGGGAAAGGTGCGCATACAGGAAGCAGCAGCAAAGACTTACTGAGTGTGGCTaGGATGGAAGGGTTACTTCG +
Preference number: 5 (lower is better)
Translates to: PLLLSVRERCAYRKQQQRLTECG*DGRVTS
Trigger: CGAAGTAACCCTTCCATCCAAGCCACACTCAGTAAG...TCTTTGCTGCTGCTTCCTGTATGCGCACCTTTCCCTCACAGACAGGAGGAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp AGCTGGCTTGAGTGTGTATGCTGGGGCGCTGGGCAGCTCAGAGGAGTGAAAAGCAGAGCAGAATCAGAATaGGTCCTGTTAAGTGCAGAT +
Preference number: 5 (lower is better)
Translates to: SWLECVCWGAGQLRGVKSRAESE*VLLSAD
Trigger: ATCTGCACTTAACAGGACCAATTCTGATTCTGCTCT...GCTTTTCACTCCTCTGAGCTGCCCAGCGCCCCAGCATACACACTCAAGCCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS TCA 90 bp TTTCCAAGGAGGCTGTTGCCGTGGCCAGCTCTCATCCAGGTGCTGTaGAGAATAACTGGCTGCGAAAGCATTCCCATCAAACTGTCTCNN +
Preference number: 5 (lower is better)
Translates to: FPRRLLPWPALIQVL*RITGCESIPIKLSX
Trigger: NNGAGACAGTTTGATGGGAATGCTTTCGCAGCCAGTTATTCTTCACAGCACCTGGATGAGAGCTGGCCACGGCAACAGCCTCCTTGGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
CDS-3UTR CAA 90 bp ATTGGCTGGAGAAAGCCTCAGGAACAGGGCAGCGTAGGGTATGGGGTGAGATCTAGGCCTTTGAACAGGTaGCTGTTTGTATCTTCTGTC +
Preference number: 5 (lower is better)
Translates to: IGWRKPQEQGSVGYGVRSRPLNR*LFVSSV
Trigger: GACAGAAGATACAAACAGCAACCTGTTCAAAGGCCT...AGATCTCACCCCATACCCTACGCTGCCCTGTTCCTGAGGCTTTCTCCAGCCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS GCA 90 bp TCAGAATTGGTCCTGTTAAGTGCAGATGTTAGCCTGAATCCAGGATaGTTCTCTTCTTTCCAAGGAGGCTGTTGCCGTGGCCAGCTCTCA +
Preference number: 5 (lower is better)
Translates to: SELVLLSADVSLNPG*FSSFQGGCCRGQLS
Trigger: TGAGAGCTGGCCACGGCAACAGCCTCCTTGGAAAGAAGAGAAGCATCCTGGATTCAGGCTAACATCTGCACTTAACAGGACCAATTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CCA 90 bp TGTTTGTATCTTCTGTCAGGATGGTGCCTGGGAAGCTGCCACAGCTaGAATATGGGTTTGGTCTCAAGTGGAATGAGTCCTGTGGTTCTC +
Preference number: 5 (lower is better)
Translates to: CLYLLSGWCLGSCHS*NMGLVSSGMSPVVL
Trigger: GAGAACCACAGGACTCATTCCACTTGAGACCAAACCCATATTCCAGCTGTGGCAGCTTCCCAGGCACCATCCTGACAGAAGATACAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS-3UTR CAA 90 bp CAGAAGAGCCCAACAGGAAATGTCTTCAGATATGTGCACGAGCATGAATACACGAGGGACTGGATCTCCTaGCTCTCCCACAGGTGTTTA +
Preference number: 5 (lower is better)
Translates to: QKSPTGNVFRYVHEHEYTRDWIS*LSHRCL
Trigger: TAAACACCTGTGGGAGAGCAAGGAGATCCAGTCCCT...CGTGTATTCATGCTCGTGCACATATCTGAAGACATTTCCTGTTGGGCTCTTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CAA 90 bp CTGCGCCGAGAGGGGCCACTCAGGTTTGTGGTGGAAAGAGACGGGTaGCTAAGGGAGAAGAGCCGGAGGGAGGGGTGCAGAGCAGAGGCG +
Preference number: 6 (lower is better)
Translates to: LRREGPLRFVVERDG*LREKSRREGCRAEA
Trigger: CGCCTCTGCTCTGCACCCCTCCCTCCGGCTCTTCTCCCTTAGCAACCCGTCTCTTTCCACCACAAACCTGAGTGGCCCCTCTCGGCGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS TCA 72 bp TCAAACTGTCTCCCTGGCTTGTCCCCAGACCTTCGGTaGAGGGGGTGGAAGCGGTTCCGGGCTGGCCTCTCC +
Preference number: 6 (lower is better)
Translates to: SNCLPGLSPDLR*RGWKRFRAGLS
Trigger: GGAGAGGCCAGCCCGGAACCGCTTCCACCCCCTTCACCGAAGGTCTGGGGACAAGCCAGGGAGACAGTTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CAA 72 bp TGGAACTCTGGCGCGCTGTTCCGCAGCTGGCTCACGTaGGGTAAGGATCCCCCGTGGTACTGGGTAAGGCGC +
Preference number: 6 (lower is better)
Translates to: WNSGALFRSWLT*GKDPPWYWVRR
Trigger: GCGCCTTACCCAGTACCACGGGGGATCCTTACCCAACGTGAGCCAGCTGCGGAACAGCGCGCCAGAGTTCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CCA 72 bp AGTGATGGCTGGAACTCTGGCGCGCTGTTCCGCAGCTaGCTCACGTTGGGTAAGGATCCCCCGTGGTACTGG +
Preference number: 6 (lower is better)
Translates to: SDGWNSGALFRS*LTLGKDPPWYW
Trigger: CCAGTACCACGGGGGATCCTTACCCAACGTGAGCCAGCTGCGGAACAGCGCGCCAGAGTTCCAGCCATCACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CCA 72 bp AAGGGGGTGGTGGGGACACTTGGGCTTGAGCGTCTGTaGGCAGGAAGGAAAGTGGGCTCTGCTCTGAGGTCA +
Preference number: 6 (lower is better)
Translates to: KGVVGTLGLERL*AGRKVGSALRS
Trigger: TGACCTCAGAGCAGAGCCCACTTTCCTTCCTGCCCACAGACGCTCAAGCCCAAGTGTCCCCACCACCCCCTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CAA 72 bp GAGGGGCCACTCAGGTTTGTGGTGGAAAGAGACGGGTaGCTAAGGGAGAAGAGCCGGAGGGAGGGGTGCAGA +
Preference number: 6 (lower is better)
Translates to: EGPLRFVVERDG*LREKSRREGCR
Trigger: TCTGCACCCCTCCCTCCGGCTCTTCTCCCTTAGCAACCCGTCTCTTTCCACCACAAACCTGAGTGGCCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CAA 90 bp TCCACAGAGGGGTCCAGCAGGCCCATGCTGGAGTCACTTAGCATGTaGAGTCCATCGAGGCTCAAGGGTTCGATCTGCAGCTCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: STEGSSRPMLESLSM*SPSRLKGSICSSSS
Trigger: GGAAGAGGAGCTGCAGATCGAACCCTTGAGCCTCGATGGACTCAACATGCTAAGTGACTCCAGCATGGGCCTGCTGGACCCCTCTGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS TCA 72 bp GTGGCGGGTTCCACGAACATTATCGGCTTGATGAAGTaGTGGCTGGAACTCTGGCGCGCTGTTCCGCAGCTG +
Preference number: 6 (lower is better)
Translates to: VAGSTNIIGLMK*WLELWRAVPQL
Trigger: CAGCTGCGGAACAGCGCGCCAGAGTTCCAGCCATCACTTCATCAAGCCGATAATGTTCGTGGAACCCGCCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CAA 72 bp GGGTCCAGCAGGCCCATGCTGGAGTCACTTAGCATGTaGAGTCCATCGAGGCTCAAGGGTTCGATCTGCAGC +
Preference number: 6 (lower is better)
Translates to: GSSRPMLESLSM*SPSRLKGSICS
Trigger: GCTGCAGATCGAACCCTTGAGCCTCGATGGACTCAACATGCTAAGTGACTCCAGCATGGGCCTGCTGGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS TCA 72 bp GGTCCAGCAGGCCCATGCTGGAGTCACTTAGCATGTTaGGTCCATCGAGGCTCAAGGGTTCGATCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: GPAGPCWSHLAC*VHRGSRVRSAA
Trigger: AGCTGCAGATCGAACCCTTGAGCCTCGATGGACTCAACATGCTAAGTGACTCCAGCATGGGCCTGCTGGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS GCA 72 bp AGCATGTTGAGTCCATCGAGGCTCAAGGGTTCGATCTaGAGCTCCTCTTCCAGAGGGAACGGGGTGTCCATG +
Preference number: 6 (lower is better)
Translates to: SMLSPSRLKGSI*SSSSRGNGVSM
Trigger: CATGGACACCCCGTTCCCTCTGGAAGAGGAGCTGCAGATCGAACCCTTGAGCCTCGATGGACTCAACATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CAA 90 bp CTGTCAGGATGGTGCCTGGGAAGCTGCCACAGCTGGAATATGGGTTaGGTCTCAAGTGGAATGAGTCCTGTGGTTCTCGGTGGCTCTGCT +
Preference number: 6 (lower is better)
Translates to: LSGWCLGSCHSWNMG*VSSGMSPVVLGGSA
Trigger: AGCAGAGCCACCGAGAACCACAGGACTCATTCCACTTGAGACCAAACCCATATTCCAGCTGTGGCAGCTTCCCAGGCACCATCCTGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS GCA 72 bp ACTGGCCTCCTCCTCCATAGGGGTCCTGGGGTTTGGTaGTCAGAGCACTCGTGTGAAGAGCAGAATCAGAAT +
Preference number: 6 (lower is better)
Translates to: TGLLLHRGPGVW*SEHSCEEQNQN
Trigger: ATTCTGATTCTGCTCTTCACACGAGTGCTCTGAGCACCAAACCCCAGGACCCCTATGGAGGAGGAGGCCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CCA 72 bp TCTTTCAGCGGACCCGGGAAGGCGGCTACTTCCGCATaGCCATCGTTTTCACCATCACAGAAACCCATGTAT +
Preference number: 6 (lower is better)
Translates to: SFSGPGKAATSA*PSFSPSQKPMY
Trigger: ATACATGGGTTTCTGTGATGGTGAAAACGATGGCCATGCGGAAGTAGCCGCCTTCCCGGGTCCGCTGAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CAA 72 bp TGGTGCCTGGGAAGCTGCCACAGCTGGAATATGGGTTaGGTCTCAAGTGGAATGAGTCCTGTGGTTCTCGGT +
Preference number: 6 (lower is better)
Translates to: WCLGSCHSWNMG*VSSGMSPVVLG
Trigger: ACCGAGAACCACAGGACTCATTCCACTTGAGACCAAACCCATATTCCAGCTGTGGCAGCTTCCCAGGCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CAA 72 bp GATGGAAGGGTTACTTCGAGAACTTTGGAGACCTCCTaGCTCTCCCACAGGTGTTTAGGCAGTGGCTTCGGG +
Preference number: 6 (lower is better)
Translates to: DGRVTSRTLETS*LSHRCLGSGFG
Trigger: CCCGAAGCCACTGCCTAAACACCTGTGGGAGAGCAAGGAGGTCTCCAAAGTTCTCGAAGTAACCCTTCCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
CDS CCA 72 bp CTTCTGTCAGGATGGTGCCTGGGAAGCTGCCACAGCTaGAATATGGGTTTGGTCTCAAGTGGAATGAGTCCT +
Preference number: 6 (lower is better)
Translates to: LLSGWCLGSCHS*NMGLVSSGMSP
Trigger: AGGACTCATTCCACTTGAGACCAAACCCATATTCCAGCTGTGGCAGCTTCCCAGGCACCATCCTGACAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CAA 72 bp GAGTGTGGCTTGGATGGAAGGGTTACTTCGAGAACTTaGGAGACCTCCTTGCTCTCCCACAGGTGTTTAGGC +
Preference number: 6 (lower is better)
Translates to: ECGLDGRVTSRT*ETSLLSHRCLG
Trigger: GCCTAAACACCTGTGGGAGAGCAAGGAGGTCTCCAAAGTTCTCGAAGTAACCCTTCCATCCAAGCCACACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149176.2
CDS GCA 72 bp GTCCTGTTAAGTGCAGATGTTAGCCTGAATCCAGGATaGTTCTCTTCTTTCCAAGGAGGCTGTTGCCGTGGC +
Preference number: 6 (lower is better)
Translates to: VLLSADVSLNPG*FSSFQGGCCRG
Trigger: GCCACGGCAACAGCCTCCTTGGAAAGAAGAGAAGCATCCTGGATTCAGGCTAACATCTGCACTTAACAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS CCA 72 bp CAGGTTGCTGTTTGTATCTTCTGTCAGGATGGTGCCTaGGAAGCTGCCACAGCTGGAATATGGGTTTGGTCT +
Preference number: 6 (lower is better)
Translates to: QVAVCIFCQDGA*EAATAGIWVWS
Trigger: AGACCAAACCCATATTCCAGCTGTGGCAGCTTCCCAGGCACCATCCTGACAGAAGATACAAACAGCAACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8
CDS GCA 72 bp AACCTGTTAAGTGCAGATGTTAGCCTGAATCCAGGATaGTTCTCTTCTTTCCAAGGAGGCTGTTGCCGTGGC +
Preference number: 6 (lower is better)
Translates to: NLLSADVSLNPG*FSSFQGGCCRG
Trigger: GCCACGGCAACAGCCTCCTTGGAAAGAAGAGAAGCATCCTGGATTCAGGCTAACATCTGCACTTAACAGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127326.2
CDS GCA 72 bp TGTTTGTATCTTCTGTCAGGATGGTGCCTGGGAAGCTaGCACAGCTGGAATATGGGTTTGGTCTCAAGTGGA +
Preference number: 6 (lower is better)
Translates to: CLYLLSGWCLGS*HSWNMGLVSSG
Trigger: TCCACTTGAGACCAAACCCATATTCCAGCTGTGGCAGCTTCCCAGGCACCATCCTGACAGAAGATACAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000122255.8