RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CRTC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000003575

Ensembl transcript IDs: ENSMUST00000076615.6

Found 207 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCAAACCCCCAGCATGGGCAGTGGGCAACGGCACAGAGAAACAGTaGAGCCGCGGCCCGGGCCTACGGAGCAGAGGCAGAGGGCATGTC +
Preference number: 1 (lower is better)
Translates to: PKPPAWAVGNGTEKQ*SRGPGLRSRGRGHV
Trigger: GACATGCCCTCTGCCTCTGCTCCGTAGGCCCGGGCCGCGGCTTCACTGTTTCTCTGTGCCGTTGCCCACTGCCCATGCTGGGGGTTTGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 90 bp TGCACCCGAGTGCTGGCTCCTGGCTGGGCCAGAGAGCTCATGAGATaGTCACAGCTGCCTGGGGCGCTGAGGCAGGGACGTGTCACCTCA +
Preference number: 1 (lower is better)
Translates to: CTRVLAPGWARELMR*SQLPGALRQGRVTS
Trigger: TGAGGTGACACGTCCCTGCCTCAGCGCCCCAGGCAGCTGTGAGCATCTCATGAGCTCTCTGGCCCAGCCAGGAGCCAGCACTCGGGTGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 90 bp GGCTCCTGGCTGGGCCAGAGAGCTCATGAGATGCTCACAGCTGCCTaGGGCGCTGAGGCAGGGACGTGTCACCTCATCATAGGACTTGGC +
Preference number: 1 (lower is better)
Translates to: GSWLGQRAHEMLTAA*GAEAGTCHLIIGLG
Trigger: GCCAAGTCCTATGATGAGGTGACACGTCCCTGCCTCAGCGCCCCAGGCAGCTGTGAGCATCTCATGAGCTCTCTGGCCCAGCCAGGAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 90 bp TACAGACACGCCCAGCCACCAGGACCCTGCATCCAGCCCCATCCTTaGCCACCCAGCTCTCTGGAGTTGAGACTAAATGCCAGTACGCCC +
Preference number: 1 (lower is better)
Translates to: YRHAQPPGPCIQPHP*PPSSLELRLNASTP
Trigger: GGGCGTACTGGCATTTAGTCTCAACTCCAGAGAGCTGGGTGGGCAAGGATGGGGCTGGATGCAGGGTCCTGGTGGCTGGGCGTGTCTGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 90 bp TGGCTTCAGGGCACTGAAAGCCAGGCCACCAGCTTAGGAGGGCCATaGGCTGTATCTGTCCTGCCCTGGCTCACTGAGAACTCAGACAGC +
Preference number: 1 (lower is better)
Translates to: WLQGTESQATSLGGP*AVSVLPWLTENSDS
Trigger: GCTGTCTGAGTTCTCAGTGAGCCAGGGCAGGACAGATACAGCCCATGGCCCTCCTAAGCTGGTGGCCTGGCTTTCAGTGCCCTGAAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 90 bp CTCCACACCCACGCCCCGGCCCTCCTTGCACAGCACATCTGGAAGTaGGTGACACTTTGGGTATCTGATGAGGGCTCTCACATCCCCAGT +
Preference number: 1 (lower is better)
Translates to: LHTHAPALLAQHIWK*VTLWVSDEGSHIPS
Trigger: ACTGGGGATGTGAGAGCCCTCATCAGATACCCAAAGTGTCACTCACTTCCAGATGTGCTGTGCAAGGAGGGCCGGGGCGTGGGTGTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 90 bp GAGGCAGCTGGGCATAGAGTTATCAAGATGCCCCAGTCCTGTTTCTaGGTCAGGGAAGTGGGCTGGACAGCCACATGGCTGAGGAGGGGC +
Preference number: 1 (lower is better)
Translates to: EAAGHRVIKMPQSCF*VREVGWTATWLRRG
Trigger: GCCCCTCCTCAGCCATGTGGCTGTCCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGGCATCTTGATAACTCTATGCCCAGCTGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 90 bp AGGGGAATAGCAATGAAAGGGTGGCAGCTTTCTCATGCAGGCGGCTaGCTAGGTGCTTGGGGAGAGACACACACAGCTTGTGTGCTCCCC +
Preference number: 1 (lower is better)
Translates to: RGIAMKGWQLSHAGG*LGAWGETHTACVLP
Trigger: GGGGAGCACACAAGCTGTGTGTGTCTCTCCCCAAGCACCTAGGCAGCCGCCTGCATGAGAAAGCTGCCACCCTTTCATTGCTATTCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 90 bp ACAGGGGGCAAGGATGGTGAGAATGAGCCAAGGAGGGGCACTGGCTaGTTCAGTGGCTCTGTCCATACCACATTCGGCCATAGGTCGATT +
Preference number: 1 (lower is better)
Translates to: TGGKDGENEPRRGTG*FSGSVHTTFGHRSI
Trigger: AATCGACCTATGGCCGAATGTGGTATGGACAGAGCCACTGAAGCAGCCAGTGCCCCTCCTTGGCTCATTCTCACCATCCTTGCCCCCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 90 bp GGAAGAGAGTCCCACCCCACTTCTGTGTGCTTTCCAGCTCGCCAGTaGTGGGGTGACAGACGCGTGCCACCACATACGTTTGATGATGAT +
Preference number: 1 (lower is better)
Translates to: GRESHPTSVCFPARQ*WGDRRVPPHTFDDD
Trigger: ATCATCATCAAACGTATGTGGTGGCACGCGTCTGTCACCCCAGCACTGGCGAGCTGGAAAGCACACAGAAGTGGGGTGGGACTCTCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 90 bp GGTGATGATAAAGTTCCCACTATTCCCTTCAAGTCCGCACCGTGGTaGCAGAAAGGCCTGAGACCTGGACAGGTGACTTGGACAAAGCAA +
Preference number: 1 (lower is better)
Translates to: GDDKVPTIPFKSAPW*QKGLRPGQVTWTKQ
Trigger: TTGCTTTGTCCAAGTCACCTGTCCAGGTCTCAGGCCTTTCTGTCACCACGGTGCGGACTTGAAGGGAATAGTGGGAACTTTATCATCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 90 bp CAACTCTACAACCCCATGCCTGTGCACACAGCTGCATCAAGACCCTaGTACCAGCAGCCCTCTCAACCTGTGCTAAATCTCTGCAAAATA +
Preference number: 1 (lower is better)
Translates to: QLYNPMPVHTAASRP*YQQPSQPVLNLCKI
Trigger: TATTTTGCAGAGATTTAGCACAGGTTGAGAGGGCTGCTGGTATCAGGGTCTTGATGCAGCTGTGTGCACAGGCATGGGGTTGTAGAGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACGCAGCGGAGTGCGCATaGCGGGGGCAGAGCCAGCCT +
Preference number: 2 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHAAECA*RGQSQP
Trigger: AGGCTGGCTCTGCCCCCGGCATGCGCACTCCGCTGC...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR TCA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACCTCGGTGGGCATGCATaGCCTGACCAGGGCTGGGGA +
Preference number: 2 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHLGGHA*PDQGWG
Trigger: TCCCCAGCCCTGGTCAGGTCATGCATGCCCACCGAG...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp GGGCGGGCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATCACGGGGAACATCCATaGGGGCCAGGCACTCACAGC +
Preference number: 2 (lower is better)
Translates to: GRAAVRALSNLTPNCGAHHGEHP*GPGTHS
Trigger: GCTGTGAGTGCCTGGCCCCCATGGATGTTCCCCGTG...ATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGCCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACGTGGCAGCTTTCTCATaGAGGCGGCTGCCTAGGTGC +
Preference number: 2 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHVAAFS*RRLPRC
Trigger: GCACCTAGGCAGCCGCCTGCATGAGAAAGCTGCCAC...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACGAGTGCAGAAGGGACTaGTGGTCCCATTGTGGGGGT +
Preference number: 2 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHECRRD*WSHCGG
Trigger: ACCCCCACAATGGGACCAGCAGTCCCTTCTGCACTC...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACAGTCCCTCCATCTTCTaGCCTGACAGGGAGATGTGG +
Preference number: 2 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHSPSIF*PDREMW
Trigger: CCACATCTCCCTGTCAGGGCAGAAGATGGAGGGACT...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACGGAGTTGAGACTAAATaGCAGTACGCCCAGGTCCAG +
Preference number: 2 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHGVETK*QYAQVQ
Trigger: CTGGACCTGGGCGTACTGGCATTTAGTCTCAACTCC...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACGTATCTGTCCTGCCCTaGCTCACTGAGAACTCAGAC +
Preference number: 2 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHVSVLP*LTENSD
Trigger: GTCTGAGTTCTCAGTGAGCCAGGGCAGGACAGATAC...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCGGTGAGCAGCCCAGGTaGCCCAGCTTGCAAGTGCTC +
Preference number: 2 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLGEQPR*PSLQVL
Trigger: GAGCACTTGCAAGCTGGGGCACCTGGGCTGCTCACC...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACCATCCTTGGGTGCTGTaGAGTAGCACATGGGTTTCA +
Preference number: 2 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHHPWVL*SSTWVS
Trigger: TGAAACCCATGTGCTACTGCACAGCACCCAAGGATG...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 90 bp GGACCCTGCATCCAGCCCCATCCTTGCCCACCCAGCTCTCTGGAGTaGAGACTAAATGCCAGTACGCCCAGGTCCAGGGTGAGCAGCCCA +
Preference number: 2 (lower is better)
Translates to: GPCIQPHPCPPSSLE*RLNASTPRSRVSSP
Trigger: TGGGCTGCTCACCCTGGACCTGGGCGTACTGGCATTTAGTCTCAACTCCAGAGAGCTGGGTGGGCAAGGATGGGGCTGGATGCAGGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR TCA 90 bp ATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATTGGGCATGCATGACCTaGCCAGGGCTGGGGATGGCG +
Preference number: 2 (lower is better)
Translates to: MALGVPQHPGSRGYKSLHWACMT*PGLGMA
Trigger: CGCCATCCCCAGCCCTGGTCAGGTCATGCATGCCCA...ATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp CAGTACGCCCAGGTCCAGGGTGAGCAGCCCAGGTGCCCCAGCTTGCAAGTGCTCGGCACTGGGCAGCATTaGAAGCTCAGAACCACAAGC +
Preference number: 2 (lower is better)
Translates to: QYAQVQGEQPRCPSLQVLGTGQH*KLRTTS
Trigger: GCTTGTGGTTCTGAGCTTGCAATGCTGCCCAGTGCC...GAGCACTTGCAAGCTGGGGCACCTGGGCTGCTCACCCTGGACCTGGGCGTACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCCAGGTGCCCCAGCTTaGAAGTGCTCCAGGCTAGTA +
Preference number: 2 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLPGAPA*KCSRLV
Trigger: TACTAGCCTGGAGCACTTGCAAGCTGGGGCACCTGG...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp AGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCTTCTGCCCTGACAGGGAGGGCTGGACAGCCACATaGCTGAGGAGGGGCTTGGCT +
Preference number: 2 (lower is better)
Translates to: STQAREDTSPSIFCPDREGWTAT*LRRGLA
Trigger: AGCCAAGCCCCTCCTCAGCCATGTGGCTGTCCAGCC...CTCCCTGTCAGGGCAGAAGATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 90 bp CCCAGGCCCACTGTGAGAAGAACGGCAGCTGACACTGGTGCAGGTTaGCTGTCCCCATGCCTTTTGCCCGTTCTTGTCCTGACCGGAGTG +
Preference number: 2 (lower is better)
Translates to: PRPTVRRTAADTGAG*LSPCLLPVLVLTGV
Trigger: CACTCCGGTCAGGACAAGAACGGGCAAAAGGCATGGGGACAGCAAACCTGCACCAGTGTCAGCTGCCGTTCTTCTCACAGTGGGCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp AGGAGGGACAGGTCACGAGGCTGGAAGAGTGAGGAGAATGTGCAGGTGGCCCGTTCACTCTGCTGTCTTTaGCCTGGGCTCGGTGGGCAT +
Preference number: 2 (lower is better)
Translates to: RRDRSRGWKSEENVQVARSLCCL*PGLGGH
Trigger: ATGCCCACCGAGCCCAGGGCAAAGACAGCAGAGTGA...ACGGGCCACCTGCACATTCTCCTCACTCTTCCAGCCTCGTGACCTGTCCCTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp AGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCTTCTGCCCTGACAGGGAGGGTGGCAGGCATTTGTaGCACACTGAGGGCCATGCC +
Preference number: 2 (lower is better)
Translates to: STQAREDTSPSIFCPDREGGRHL*HTEGHA
Trigger: GGCATGGCCCTCAGTGTGGCACAAATGCCTGCCACC...CTCCCTGTCAGGGCAGAAGATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GACAGCTCTGAGGGACAGCAGCCAGACCTAGGGCACAACTCTACAACCCCATGCAGAGTGAGGAGAATGTaGAGGTGGCCCGTGACCCTC +
Preference number: 2 (lower is better)
Translates to: DSSEGQQPDLGHNSTTPCRVRRM*RWPVTL
Trigger: GAGGGTCACGGGCCACCTGCACATTCTCCTCACTCT...GCATGGGGTTGTAGAGTTGTGCCCTAGGTCTGGCTGCTGTCCCTCAGAGCTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR TCA 90 bp AGGAGGGACAGGTCACGAGGCTGGAAGAGTGAGGAGAATGTGCAGGTGGCCCGTGATGGAGGAAGGCAGTaGCAGCTGACAACAGTCGAA +
Preference number: 2 (lower is better)
Translates to: RRDRSRGWKSEENVQVARDGGRQ*QLTTVE
Trigger: TTCGACTGTTGTCAGCTGTCACTGCCTTCCTCCATC...ACGGGCCACCTGCACATTCTCCTCACTCTTCCAGCCTCGTGACCTGTCCCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR TCA 90 bp GGCTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTGGGCCAGAGAGCTCATaGGATGCTCACAGCTGCCTG +
Preference number: 2 (lower is better)
Translates to: GWVQLHCCSVGLWVDCQGGPESS*DAHSCL
Trigger: CAGGCAGCTGTGAGCATCTCATGAGCTCTCTGGCCC...ACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GCTCAGACTTCTACAGCTGGAAGAGAGTCCCACCCCACTTCTGTGTGCTTTCCACGCCCCGGCCCTCCTTaGACAGCACATCTGGAAGTG +
Preference number: 2 (lower is better)
Translates to: AQTSTAGRESHPTSVCFPRPGPP*TAHLEV
Trigger: CACTTCCAGATGTGCTGTGCAAGGAGGGCCGGGGCG...TGGAAAGCACACAGAAGTGGGGTGGGACTCTCTTCCAGCTGTAGAAGTCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp CTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTTACAGAACCACCAGGGCTaGTGCCTCCCGAGCCCCAGA +
Preference number: 2 (lower is better)
Translates to: LGPAALLFCGALGRLPRLQNHQG*CLPSPR
Trigger: TCTGGGGCTCGGGAGGCAGCAGCCCTGGTGGTTCTG...TAACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTCAGCCACCAGGACCCTaGATCCAGCCCCATCCTTGC +
Preference number: 2 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFQPPGP*IQPHPC
Trigger: GCAAGGATGGGGCTGGATGCAGGGTCCTGGTGGCTG...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp GCTCAGACTTCTACAGCTGGAAGAGAGTCCCACCCCACTTCTGTGTGCTTTCCAGGCTGGCAGGGGCACTaGGCAGCATTGCAAGCTCAG +
Preference number: 2 (lower is better)
Translates to: AQTSTAGRESHPTSVCFPGWQGH*AALQAQ
Trigger: CTGAGCTTGCAATGCTGCCCAGTGCCCCTGCCAGCC...TGGAAAGCACACAGAAGTGGGGTGGGACTCTCTTCCAGCTGTAGAAGTCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCAAACAGTGTTTATTCTaGTCCAGGTCGGCCCCGTCA +
Preference number: 2 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLKQCLF*SRSAPS
Trigger: TGACGGGGCCGACCTGGACCAGAATAAACACTGTTT...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 90 bp GTCCGCACCGTGGTGACAGAAAGGCCTGAGACCTGGACAGGTGACTaGGACAAAGCAATGCTGTGTCTTCAGACCCAGGGGAAGGGGAAT +
Preference number: 2 (lower is better)
Translates to: VRTVVTERPETWTGD*DKAMLCLQTQGKGN
Trigger: ATTCCCCTTCCCCTGGGTCTGAAGACACAGCATTGCTTTGTCCAAGTCACCTGTCCAGGTCTCAGGCCTTTCTGTCACCACGGTGCGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR TCA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTGCCCCAAGGAAAGGCTaGGTGCAGAAGGGACTGCTG +
Preference number: 2 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFAPRKG*VQKGLL
Trigger: CAGCAGTCCCTTCTGCACTCAGCCTTTCCTTGGGGC...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp AGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCTTCTGCCCTGACAGGGAGATGGGTCACAGTATCTaGATGTCACCAGCTGAGGCC +
Preference number: 2 (lower is better)
Translates to: STQAREDTSPSIFCPDREMGHSI*MSPAEA
Trigger: GGCCTCAGCTGGTGACATGCAGATACTGTGACCCAT...CTCCCTGTCAGGGCAGAAGATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTGCCAAGGAGGGGCACTaGCTGCTTCAGTGGCTCTGT +
Preference number: 2 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFAKEGH*LLQWLC
Trigger: ACAGAGCCACTGAAGCAGCCAGTGCCCCTCCTTGGC...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTAGGAGAATGTGCAGGTaGCCCGTGACCCTCCATCCC +
Preference number: 2 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFRRMCR*PVTLHP
Trigger: GGGATGGAGGGTCACGGGCCACCTGCACATTCTCCT...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp CTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTTACCCAAACCCCCAGCATaGGCAGTGGGCAACGGCACA +
Preference number: 2 (lower is better)
Translates to: LGPAALLFCGALGRLPRLPKPPA*AVGNGT
Trigger: TGTGCCGTTGCCCACTGCCCATGCTGGGGGTTTGGG...TAACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp AGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCTTCTGCCCTGACAGGGAGTCAGACTTCTACAGCTaGAAGAGAGTCCCACCCCAC +
Preference number: 2 (lower is better)
Translates to: STQAREDTSPSIFCPDRESDFYS*KRVPPH
Trigger: GTGGGGTGGGACTCTCTTCCAGCTGTAGAAGTCTGA...CTCCCTGTCAGGGCAGAAGATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp CTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTTACCGAGTGCTGGCTCCTaGCTGGGCCAGAGAGCTCAT +
Preference number: 2 (lower is better)
Translates to: LGPAALLFCGALGRLPRLPSAGS*LGQRAH
Trigger: ATGAGCTCTCTGGCCCAGCCAGGAGCCAGCACTCGG...TAACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR TCA 90 bp CTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTTACCCCAGTCCTGTTTCTaGGTCAGGGAAGTGGGCTGG +
Preference number: 2 (lower is better)
Translates to: LGPAALLFCGALGRLPRLPQSCF*VREVGW
Trigger: CCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGG...TAACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp ATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATAACTCTACAACCCCATaGCTGTGCACACAGCTGCAT +
Preference number: 2 (lower is better)
Translates to: MALGVPQHPGSRGYKSLHNSTTP*LCTQLH
Trigger: ATGCAGCTGTGTGCACAGGCATGGGGTTGTAGAGTT...ATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTCAAGGAAAGGCTGAGTaGAGAAGGGACTGCTGGTCC +
Preference number: 2 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFQGKAE*RRDCWS
Trigger: GGACCAGCAGTCCCTTCTGCACTCAGCCTTTCCTTG...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp GGCTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTCTGACCCCAGGTAGATaGATGGACAGACAGATAGCC +
Preference number: 2 (lower is better)
Translates to: GWVQLHCCSVGLWVDCQGLTPGR*MDRQIA
Trigger: GGCTATCTGTCTGTCCATCCATCTACCTGGGGTCAG...ACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp ATAGAGTTATCAAGATGCCCCAGTCCTGTTTCTGAGTCAGGGAAGTGGGCTGGAGTGCTGGCTCCTGGCTaGGCCAGAGAGCTCATGAGA +
Preference number: 2 (lower is better)
Translates to: IELSRCPSPVSESGKWAGVLAPG*ARELMR
Trigger: TCTCATGAGCTCTCTGGCCCAGCCAGGAGCCAGCAC...TCCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGGCATCTTGATAACTCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATAACCACCAGGGCTGCTaGCTCCCGAGCCCCAGATCC +
Preference number: 2 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYNHQGC*LPSPRS
Trigger: GGATCTGGGGCTCGGGAGGCAGCAGCCCTGGTGGTT...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp ATAGAGTTATCAAGATGCCCCAGTCCTGTTTCTGAGTCAGGGAAGTGGGCTGGAGGGCTGTATCTGTCCTaGCCTGGCTCACTGAGAACT +
Preference number: 2 (lower is better)
Translates to: IELSRCPSPVSESGKWAGGLYLS*PGSLRT
Trigger: AGTTCTCAGTGAGCCAGGGCAGGACAGATACAGCCC...TCCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGGCATCTTGATAACTCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR TCA 90 bp ATAGAGTTATCAAGATGCCCCAGTCCTGTTTCTGAGTCAGGGAAGTGGGCTGGAAACTCAGACAGCCAGTaGGTAACTGGACTCCAGGTA +
Preference number: 2 (lower is better)
Translates to: IELSRCPSPVSESGKWAGNSDSQ*VTGLQV
Trigger: TACCTGGAGTCCAGTTACTCACTGGCTGTCTGAGTT...TCCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGGCATCTTGATAACTCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATGGCTGCCTAGGTGCTTaGGGAGAGACACACACAGCT +
Preference number: 2 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYGCLGA*GETHTA
Trigger: AGCTGTGTGTGTCTCTCCCCAAGCACCTAGGCAGCC...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp ATAGAGTTATCAAGATGCCCCAGTCCTGTTTCTGAGTCAGGGAAGTGGGCTGGACCTGGACAGGTGACTTaGACAAAGCAATGCTGTGTC +
Preference number: 2 (lower is better)
Translates to: IELSRCPSPVSESGKWAGPGQVT*TKQCCV
Trigger: GACACAGCATTGCTTTGTCCAAGTCACCTGTCCAGG...TCCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGGCATCTTGATAACTCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 90 bp AGCCATTTCTTAGGATATAGAAAGGGGCTGGGTCCAGCTGCATTGTaGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTTAACTGAGGCA +
Preference number: 2 (lower is better)
Translates to: SHFLGYRKGLGPAAL*FCGALGRLPRLTEA
Trigger: TGCCTCAGTTAACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCCCCTTTCTATATCCTAAGAAATGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR TCA 90 bp GGCTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTCATAGGACTTGGCAATaGACTGGTCACATTAATACA +
Preference number: 2 (lower is better)
Translates to: GWVQLHCCSVGLWVDCQGHRTWQ*TGHINT
Trigger: TGTATTAATGTGACCAGTTCATTGCCAAGTCCTATG...ACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTATTAATACAGCTACATaGACTCTTGGCTTCAGGGCA +
Preference number: 2 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFINTAT*TLGFRA
Trigger: TGCCCTGAAGCCAAGAGTGCATGTAGCTGTATTAAT...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTATAGAGTTATCAAGATaGCCCAGTCCTGTTTCTGAG +
Preference number: 2 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFIELSR*PSPVSE
Trigger: CTCAGAAACAGGACTGGGGCATCTTGATAACTCTAT...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR TCA 90 bp ATAGAGTTATCAAGATGCCCCAGTCCTGTTTCTGAGTCAGGGAAGTGGGCTGGAACATCTGGAAGTGAGTaGCACTTTGGGTATCTGATG +
Preference number: 2 (lower is better)
Translates to: IELSRCPSPVSESGKWAGTSGSE*HFGYLM
Trigger: CATCAGATACCCAAAGTGTCACTCACTTCCAGATGT...TCCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGGCATCTTGATAACTCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CCA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATAGCTACATGCACTCTTaGCTTCAGGGCACTGAAAGC +
Preference number: 2 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYSYMHS*LQGTES
Trigger: GCTTTCAGTGCCCTGAAGCCAAGAGTGCATGTAGCT...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR GCA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATGGGTCAGCTACCAAATaGCAACAGAAACGGAAGGAA +
Preference number: 2 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYGSATK*QQKRKE
Trigger: TTCCTTCCGTTTCTGTTGGCATTTGGTAGCTGACCC...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp GCGTCTGCGCCAGAAGGTGGGGCGGGCGGCCGTGCGTaGCCTGAGCAACCTGACCCCCAACTGCGGTGCCCA +
Preference number: 3 (lower is better)
Translates to: ASAPEGGAGGRA*PEQPDPQLRCP
Trigger: TGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGCCCGCCCCACCTTCTGGCGCAGACGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp GCCCATGCGCACGATCCACAGACATCCGCAGCGGAGTaGGCATGCCGGGGGCAGAGCCAGCCTGGGCACGGG +
Preference number: 3 (lower is better)
Translates to: AHAHDPQTSAAE*ACRGQSQPGHG
Trigger: CCCGTGCCCAGGCTGGCTCTGCCCCCGGCATGCGCACTCCGCTGCGGATGTCTGTGGATCGTGCGCATGGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CAA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACCATCCAGCCCCATCCTaGCCCACCCAGCTCTCTGGA +
Preference number: 3 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHHPAPS*PTQLSG
Trigger: TCCAGAGAGCTGGGTGGGCAAGGATGGGGCTGGATG...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CAA 90 bp CAGTACGCCCAGGTCCAGGGTGAGCAGCCCAGGTGCCCCAGCTTGCAAGTGCTCTTGCCGTCCCCAGGTTaGGGGCAGCGCCGTTGGAGA +
Preference number: 3 (lower is better)
Translates to: QYAQVQGEQPRCPSLQVLLPSPG*GQRRWR
Trigger: TCTCCAACGGCGCTGCCCCAAACCTGGGGACGGCAA...GAGCACTTGCAAGCTGGGGCACCTGGGCTGCTCACCCTGGACCTGGGCGTACTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp TGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATaGGCACGATCCACAGACATCCGCAGCGGAGTGCGC +
Preference number: 3 (lower is better)
Translates to: CPEQPDPQLRCP*ARSTDIRSGVR
Trigger: GCGCACTCCGCTGCGGATGTCTGTGGATCGTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp CGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTaGCCATGCGCACGATCCACAGACATCCGCAGCGGA +
Preference number: 3 (lower is better)
Translates to: RACPEQPDPQLR*PCARSTDIRSG
Trigger: TCCGCTGCGGATGTCTGTGGATCGTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CAA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACCCCAGCTCTCTGGAGTaGAGACTAAATGCCAGTACG +
Preference number: 3 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHPSSLE*RLNAST
Trigger: CGTACTGGCATTTAGTCTCAACTCCAGAGAGCTGGG...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp GGTCCCATTGTGGGGGTTCTGCTGCTATCCCTACCCTaGCCAGGAGGTTGGGCCCCTGAGCCCAGCAGGGTT +
Preference number: 3 (lower is better)
Translates to: GPIVGVLLLSLP*PGGWAPEPSRV
Trigger: AACCCTGCTGGGCTCAGGGGCCCAACCTCCTGGTCAGGGTAGGGATAGCAGCAGAACCCCCACAATGGGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp CAGCTTGTGTGCTCCCCAAACCCCCAGCATGGGCAGTaGGCAACGGCACAGAGAAACAGTGAAGCCGCGGCC +
Preference number: 3 (lower is better)
Translates to: QLVCSPNPQHGQ*ATAQRNSEAAA
Trigger: GGCCGCGGCTTCACTGTTTCTCTGTGCCGTTGCCCACTGCCCATGCTGGGGGTTTGGGGAGCACACAAGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CAA 90 bp CAGTACGCCCAGGTCCAGGGTGAGCAGCCCAGGTGCCCCAGCTTGCAAGTGCTCGGGCACTGGGCAGCATaGCAAGCTCAGAACCACAAG +
Preference number: 3 (lower is better)
Translates to: QYAQVQGEQPRCPSLQVLGHWAA*QAQNHK
Trigger: CTTGTGGTTCTGAGCTTGCAATGCTGCCCAGTGCCC...GAGCACTTGCAAGCTGGGGCACCTGGGCTGCTCACCCTGGACCTGGGCGTACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CAA 90 bp GCCTCCCGAGCCCCAGATCCTAAACAGCAGGAGGGACAGGTCACGAGGCTGGAAACGCCCCGGCCCTCCTaGCACAGCACATCTGGAAGT +
Preference number: 3 (lower is better)
Translates to: ASRAPDPKQQEGQVTRLETPRPS*HSTSGS
Trigger: ACTTCCAGATGTGCTGTGCAAGGAGGGCCGGGGCGT...TTCCAGCCTCGTGACCTGTCCCTCCTGCTGTTTAGGATCTGGGGCTCGGGAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp TGCCAGTACGCCCAGGTCCAGGGTGAGCAGCCCAGGTaGCCCAGCTTGCAAGTGCTCCAGGCTAGTATTCCA +
Preference number: 3 (lower is better)
Translates to: CQYAQVQGEQPR*PSLQVLQASIP
Trigger: TGGAATACTAGCCTGGAGCACTTGCAAGCTGGGGCACCTGGGCTGCTCACCCTGGACCTGGGCGTACTGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp CAGAAGGGACTGCTGGTCCCATTGTGGGGGTTCTGCTaGTATCCCTACCCTGACCAGGAGGTTGGGCCCCTG +
Preference number: 3 (lower is better)
Translates to: QKGLLVPLWGFC*YPYPDQEVGPL
Trigger: CAGGGGCCCAACCTCCTGGTCAGGGTAGGGATAGCAGCAGAACCCCCACAATGGGACCAGCAGTCCCTTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp GTGCAGAAGGGACTGCTGGTCCCATTGTGGGGGTTCTaGTGCTATCCCTACCCTGACCAGGAGGTTGGGCCC +
Preference number: 3 (lower is better)
Translates to: VQKGLLVPLWGF*CYPYPDQEVGP
Trigger: GGGCCCAACCTCCTGGTCAGGGTAGGGATAGCAGCAGAACCCCCACAATGGGACCAGCAGTCCCTTCTGCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp GCACTGGGCAGCATTGCAAGCTCAGAACCACAAGCTTaGCCGTTGGCAAAGGGGGACGCCATTGCCGTCCCC +
Preference number: 3 (lower is better)
Translates to: ALGSIASSEPQA*PLAKGDAIAVP
Trigger: GGGGACGGCAATGGCGTCCCCCTTTGCCAACGGCCAAGCTTGTGGTTCTGAGCTTGCAATGCTGCCCAGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CAA 90 bp ATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCGGCTGCCTAGGTGCTaGGGGAGAGACACACACAGC +
Preference number: 3 (lower is better)
Translates to: MALGVPQHPGSRGYKSLHRLPRC*GRDTHS
Trigger: GCTGTGTGTGTCTCTCCCCAAGCACCTAGGCAGCCG...ATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp GTAGACTGCGCCACGGTGTCCTCACCTGGACAGCTCTaGGGGACAGCAGCCAGACCTAGGGCACAACTCTAC +
Preference number: 3 (lower is better)
Translates to: VDCATVSSPGQL*GTAARPRAQLY
Trigger: GTAGAGTTGTGCCCTAGGTCTGGCTGCTGTCCCTCAGAGCTGTCCAGGTGAGGACACCGTGGCGCAGTCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp TCCTTGCCCACCCAGCTCTCTGGAGTTGAGACTAAATaGCAGTACGCCCAGGTCCAGGGTGAGCAGCCCAGG +
Preference number: 3 (lower is better)
Translates to: SLPTQLSGVETK*QYAQVQGEQPR
Trigger: CCTGGGCTGCTCACCCTGGACCTGGGCGTACTGGCATTTAGTCTCAACTCCAGAGAGCTGGGTGGGCAAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp GGCTGCTCCCAGCACAGTTCAATGGGTCACAGTATCTaGATGTCACCAGCTGAGGCCCCCACGGCCTTGAGC +
Preference number: 3 (lower is better)
Translates to: GCSQHSSMGHSI*MSPAEAPTALS
Trigger: GCTCAAGGCCGTGGGGGCCTCAGCTGGTGACATGCAGATACTGTGACCCATTGAACTGTGCTGGGAGCAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp GGCACTGAAAGCCAGGCCACCAGCTTAGGAGGGCCATaGGCTGTATCTGTCCTGCCCTGGCTCACTGAGAAC +
Preference number: 3 (lower is better)
Translates to: GTESQATSLGGP*AVSVLPWLTEN
Trigger: GTTCTCAGTGAGCCAGGGCAGGACAGATACAGCCCATGGCCCTCCTAAGCTGGTGGCCTGGCTTTCAGTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp CTGGGCCAGAGAGCTCATGAGATGCTCACAGCTGCCTaGGGCGCTGAGGCAGGGACGTGTCACCTCATCATA +
Preference number: 3 (lower is better)
Translates to: LGQRAHEMLTAA*GAEAGTCHLII
Trigger: TATGATGAGGTGACACGTCCCTGCCTCAGCGCCCCAGGCAGCTGTGAGCATCTCATGAGCTCTCTGGCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp AAGGACCAGGTACCACCACACCAGAGGCAGACCACATaGGGTAGACTGCGCCACGGTGTCCTCACCTGGACA +
Preference number: 3 (lower is better)
Translates to: KDQVPPHQRQTT*GRLRHGVLTWT
Trigger: TGTCCAGGTGAGGACACCGTGGCGCAGTCTACCCCATGTGGTCTGCCTCTGGTGTGGTGGTACCTGGTCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp ACCCCATGTGATGGATCCCTAGCCCCAAGGAAAGGCTaGGTGCAGAAGGGACTGCTGGTCCCATTGTGGGGG +
Preference number: 3 (lower is better)
Translates to: TPCDGSLAPRKG*VQKGLLVPLWG
Trigger: CCCCCACAATGGGACCAGCAGTCCCTTCTGCACTCAGCCTTTCCTTGGGGCTAGGGATCCATCACATGGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp TCCCACCCCACTTCTGTGTGCTTTCCAGCTCGCCAGTaGTGGGGTGACAGACGCGTGCCACCACATACGTTT +
Preference number: 3 (lower is better)
Translates to: SHPTSVCFPARQ*WGDRRVPPHTF
Trigger: AAACGTATGTGGTGGCACGCGTCTGTCACCCCAGCACTGGCGAGCTGGAAAGCACACAGAAGTGGGGTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp TCTACAGCTGGAAGAGAGTCCCACCCCACTTCTGTGTaGTTTCCAGCTCGCCAGTGCTGGGGTGACAGACGC +
Preference number: 3 (lower is better)
Translates to: STAGRESHPTSV*FPARQCWGDRR
Trigger: GCGTCTGTCACCCCAGCACTGGCGAGCTGGAAAGCACACAGAAGTGGGGTGGGACTCTCTTCCAGCTGTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp GCAGCATTGCAAGCTCAGAACCACAAGCTTGGCCGTTaGCAAAGGGGGACGCCATTGCCGTCCCCAGGTTTG +
Preference number: 3 (lower is better)
Translates to: AALQAQNHKLGR*QRGTPLPSPGL
Trigger: CAAACCTGGGGACGGCAATGGCGTCCCCCTTTGCCAACGGCCAAGCTTGTGGTTCTGAGCTTGCAATGCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CAA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCCACACTGGATAGTGTaGCAGGAAGGGGATATGACA +
Preference number: 3 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLPHWIV*QEGDMT
Trigger: TGTCATATCCCCTTCCTGCAACACTATCCAGTGTGG...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CAA 90 bp ATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATGACACTGGTGCAGGTTaGCTGTCCCCATGCCTTTTG +
Preference number: 3 (lower is better)
Translates to: MALGVPQHPGSRGYKSLHDTGAG*LSPCLL
Trigger: CAAAAGGCATGGGGACAGCAAACCTGCACCAGTGTC...ATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp TGGACTCCAGGTACCCTGTCAGCCTCTCGGCCCTGTTaGGGCCGTTTGCTCAGACTTCTACAGCTGGAAGAG +
Preference number: 3 (lower is better)
Translates to: WTPGTLSASRPC*GRLLRLLQLEE
Trigger: CTCTTCCAGCTGTAGAAGTCTGAGCAAACGGCCTCAACAGGGCCGAGAGGCTGACAGGGTACCTGGAGTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp CTCACAGCCTCGGCCATCAGCCTGACCCCAGGTAGATaGATGGACAGACAGATAGCCAGCCTAGTACACAGC +
Preference number: 3 (lower is better)
Translates to: LTASAISLTPGR*MDRQIASLVHS
Trigger: GCTGTGTACTAGGCTGGCTATCTGTCTGTCCATCCATCTACCTGGGGTCAGGCTGATGGCCGAGGCTGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp CAGATCCTAAACAGCAGGAGGGACAGGTCACGAGGCTaGAAGAGTGAGGAGAATGTGCAGGTGGCCCGTGAC +
Preference number: 3 (lower is better)
Translates to: QILNSRRDRSRG*KSEENVQVARD
Trigger: GTCACGGGCCACCTGCACATTCTCCTCACTCTTCCAGCCTCGTGACCTGTCCCTCCTGCTGTTTAGGATCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp CACCCCACTTCTGTGTGCTTTCCAGCTCGCCAGTGCTaGGGTGACAGACGCGTGCCACCACATACGTTTGAT +
Preference number: 3 (lower is better)
Translates to: HPTSVCFPARQC*GDRRVPPHTFD
Trigger: ATCAAACGTATGTGGTGGCACGCGTCTGTCACCCCAGCACTGGCGAGCTGGAAAGCACACAGAAGTGGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp AGGGCCATGGGCTGTATCTGTCCTGCCCTGGCTCACTaGGAACTCAGACAGCCAGTGAGTAACTGGACTCCA +
Preference number: 3 (lower is better)
Translates to: RAMGCICPALAH*ELRQPVSNWTP
Trigger: TGGAGTCCAGTTACTCACTGGCTGTCTGAGTTCTCAGTGAGCCAGGGCAGGACAGATACAGCCCATGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp GGCTCGAGAGGATACAAGTCCCTCCATCTTCTGCCCTaGCAGGGAGATGTGGCTATGACCAATGGGTGGCAG +
Preference number: 3 (lower is better)
Translates to: GSRGYKSLHLLP*QGDVAMTNGWQ
Trigger: CTGCCACCCATTGGTCATAGCCACATCTCCCTGTCAGGGCAGAAGATGGAGGGACTTGTATCCTCTCGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp GAGTTATGGCCACAGCCCTGTCCTCATGTCCCCCTGTaGCCAGAAGTGCTGGGTTGGATTAGGCTAGGCCTT +
Preference number: 3 (lower is better)
Translates to: ELWPQPCPHVPL*PEVLGWIRLGL
Trigger: AAGGCCTAGCCTAATCCAACCCAGCACTTCTGGTCACAGGGGGACATGAGGACAGGGCTGTGGCCATAACTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp CCCAGGTCCAGGGTGAGCAGCCCAGGTGCCCCAGCTTaGAAGTGCTCCAGGCTAGTATTCCAGTTAACTTTT +
Preference number: 3 (lower is better)
Translates to: PRSRVSSPGAPA*KCSRLVFQLTF
Trigger: AAAAGTTAACTGGAATACTAGCCTGGAGCACTTGCAAGCTGGGGCACCTGGGCTGCTCACCCTGGACCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp GCAATGAAAGGGTGGCAGCTTTCTCATGCAGGCGGCTaGCTAGGTGCTTGGGGAGAGACACACACAGCTTGT +
Preference number: 3 (lower is better)
Translates to: AMKGWQLSHAGG*LGAWGETHTAC
Trigger: ACAAGCTGTGTGTGTCTCTCCCCAAGCACCTAGGCAGCCGCCTGCATGAGAAAGCTGCCACCCTTTCATTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp GCTTTCCAGCTCGCCAGTGCTGGGGTGACAGACGCGTaGCACCACATACGTTTGATGATGATGGTGATGGTG +
Preference number: 3 (lower is better)
Translates to: AFQLASAGVTDA*HHIRLMMMVMV
Trigger: CACCATCACCATCATCATCAAACGTATGTGGTGGCACGCGTCTGTCACCCCAGCACTGGCGAGCTGGAAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp GGCACAACTCTACAACCCCATGCCTGTGCACACAGCTaGATCAAGACCCTGATACCAGCAGCCCTCTCAACC +
Preference number: 3 (lower is better)
Translates to: GTTLQPHACAHS*IKTLIPAALST
Trigger: GGTTGAGAGGGCTGCTGGTATCAGGGTCTTGATGCAGCTGTGTGCACAGGCATGGGGTTGTAGAGTTGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR GCA 72 bp CAGCAGCCAGACCTAGGGCACAACTCTACAACCCCATaGCTGTGCACACAGCTGCATCAAGACCCTGATACC +
Preference number: 3 (lower is better)
Translates to: QQPDLGHNSTTP*LCTQLHQDPDT
Trigger: GGTATCAGGGTCTTGATGCAGCTGTGTGCACAGGCATGGGGTTGTAGAGTTGTGCCCTAGGTCTGGCTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp GTATCTGCATGTCACCAGCTGAGGCCCCCACGGCCTTaGGCTATCATCTTGGGATGTCTTGGCAATACAGGG +
Preference number: 3 (lower is better)
Translates to: VSACHQLRPPRP*AIILGCLGNTG
Trigger: CCCTGTATTGCCAAGACATCCCAAGATGATAGCTCAAGGCCGTGGGGGCCTCAGCTGGTGACATGCAGATAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp GGGCATAGAGTTATCAAGATGCCCCAGTCCTGTTTCTaGGTCAGGGAAGTGGGCTGGACAGCCACATGGCTG +
Preference number: 3 (lower is better)
Translates to: GHRVIKMPQSCF*VREVGWTATWL
Trigger: CAGCCATGTGGCTGTCCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGGCATCTTGATAACTCTATGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp AAAGTTCCCACTATTCCCTTCAAGTCCGCACCGTGGTaGCAGAAAGGCCTGAGACCTGGACAGGTGACTTGG +
Preference number: 3 (lower is better)
Translates to: KVPTIPFKSAPW*QKGLRPGQVTW
Trigger: CCAAGTCACCTGTCCAGGTCTCAGGCCTTTCTGTCACCACGGTGCGGACTTGAAGGGAATAGTGGGAACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp AACCCCATGCCTGTGCACACAGCTGCATCAAGACCCTaGTACCAGCAGCCCTCTCAACCTGTGCTAAATCTC +
Preference number: 3 (lower is better)
Translates to: NPMPVHTAASRP*YQQPSQPVLNL
Trigger: GAGATTTAGCACAGGTTGAGAGGGCTGCTGGTATCAGGGTCTTGATGCAGCTGTGTGCACAGGCATGGGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp GACATCAAGCCCAGTGTGATAGCTGTCAGCCATCCTTaGGTGCTGTGCAGTAGCACATGGGTTTCACTAGGG +
Preference number: 3 (lower is better)
Translates to: DIKPSVIAVSHP*VLCSSTWVSLG
Trigger: CCCTAGTGAAACCCATGTGCTACTGCACAGCACCCAAGGATGGCTGACAGCTATCACACTGGGCTTGATGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR-3UTR CAA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATGTCACTCTGCTGTCTTaGCCCTGGGCTCGGTGGGCA +
Preference number: 3 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYVTLLS*PWARWA
Trigger: TGCCCACCGAGCCCAGGGCAAAGACAGCAGAGTGAC...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CCA 72 bp TGGATAGTGTTGCAGGAAGGGGATATGACAGGGCCTTaGGTCAAGGGGACAAGCCATTTCTTAGGATATAGA +
Preference number: 3 (lower is better)
Translates to: WIVLQEGDMTGP*VKGTSHFLGYR
Trigger: TCTATATCCTAAGAAATGGCTTGTCCCCTTGACCCAAGGCCCTGTCATATCCCCTTCCTGCAACACTATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR TCA 72 bp GGCAGGGACGTGTCACCTCATCATAGGACTTGGCAATaGACTGGTCACATTAATACAGCTACATGCACTCTT +
Preference number: 3 (lower is better)
Translates to: GRDVSPHHRTWQ*TGHINTATCTL
Trigger: AAGAGTGCATGTAGCTGTATTAATGTGACCAGTTCATTGCCAAGTCCTATGATGAGGTGACACGTCCCTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp GGGCGGGCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATAGACTGGGTGGCAGGTaGCCCTGCACTCGTGCGGTA +
Preference number: 4 (lower is better)
Translates to: GRAAVRALSNLTPNCGAHRLGGR*PCTRAV
Trigger: TACCGCACGAGTGCAGGGTCACCTGCCACCCAGTCT...ATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGCCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GGGCGGGCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGGGGCTGACGACTGCTaGCCGGTGCTGTGGAGAAGA +
Preference number: 4 (lower is better)
Translates to: GRAAVRALSNLTPNCGAHGADDC*PVLWRR
Trigger: TCTTCTCCACAGCACCGGCCAGCAGTCGTCAGCCCC...ATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGCCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATGCGCACGCCCACAGACACCTGTaGAGGTGGTGGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: AAVRALSNLTPNCGAHAHAHRHL*RWWLLL
Trigger: CAGCAGCAGCCACCACCTCCACAGGTGTCTGTGGGC...GTGCGCATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GCGAGCACGGGGAACATCCATGGGGGCCAGGCACTCACAGCCTCGGCCATCAGCTGTGGGGGAGGCTGCTaGGAGCCAGTCTGGGTGAAG +
Preference number: 4 (lower is better)
Translates to: ASTGNIHGGQALTASAISCGGGC*EPVWVK
Trigger: CTTCACCCAGACTGGCTCCCAGCAGCCTCCCCCACA...GCTGATGGCCGAGGCTGTGAGTGCCTGGCCCCCATGGATGTTCCCCGTGCTCGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCCTGGGACCCGCCTGTaGAGGACTCTGCCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLPGTRL*RTLPGW
Trigger: CCAGCCAGGCAGAGTCCTTCACAGGCGGGTCCCAGG...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GCGAGCACGGGGAACATCCATGGGGGCCAGGCACTCACAGCCTCGGCCATCAGCACAACGGAGACAGGGTaGGTGACACCTGCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: ASTGNIHGGQALTASAISTTETG*VTPAGP
Trigger: AGGCCCAGCAGGTGTCACCCACCCTGTCTCCGTTGT...GCTGATGGCCGAGGCTGTGAGTGCCTGGCCCCCATGGATGTTCCCCGTGCTCGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp ACAGATAGCCAGCCTAGTACACAGCGGCCTCACACACGCCAGGCATCATGGGAGGTGGGTGACACCTGCTaGGCCTGCTGCCGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: TDSQPSTQRPHTRQASWEVGDTC*ACCRLA
Trigger: GGCCAGGCGGCAGCAGGCCCAGCAGGTGTCACCCAC...CTCCCATGATGCCTGGCGTGTGTGAGGCCGCTGTGTACTAGGCTGGCTATCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GCCTCCCGAGCCCCAGATCCTAAACAGCAGGAGGGACAGGTCACGAGGCTGGAATCCTGTAGGCCCCCGTaGCTCCCGCTCAGACCCATC +
Preference number: 4 (lower is better)
Translates to: ASRAPDPKQQEGQVTRLESCRPP*LPLRPI
Trigger: GATGGGTCTGAGCGGGAGCCACGGGGGCCTACAGGA...TTCCAGCCTCGTGACCTGTCCCTCCTGCTGTTTAGGATCTGGGGCTCGGGAGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCTGCTGCTGGAGCTGGTaGGAGCAGGGAACGGAGGCT +
Preference number: 4 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLCCWSW*EQGTEA
Trigger: AGCCTCCGTTCCCTGCTCTCACCAGCTCCAGCAGCA...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp GCCTCCCGAGCCCCAGATCCTAAACAGCAGGAGGGACAGGTCACGAGGCTGGAAGCCGTCTCCTCCGCCTaGTTCTGGTTGTGCAGTGCG +
Preference number: 4 (lower is better)
Translates to: ASRAPDPKQQEGQVTRLEAVSSA*FWLCSA
Trigger: CGCACTGCACAACCAGAAGCAGGCGGAGGAGACGGC...TTCCAGCCTCGTGACCTGTCCCTCCTGCTGTTTAGGATCTGGGGCTCGGGAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCAGTACTGGCCACGGCTaGGGCCCAGCTGCAGGTACT +
Preference number: 4 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLSTGHG*GPAAGT
Trigger: AGTACCTGCAGCTGGGCCCCAGCCGTGGCCAGTACT...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GCGAGCACGGGGAACATCCATGGGGGCCAGGCACTCACAGCCTCGGCCATCAGCAGTAAGACTCTCTTCTaGTGCGCATCCTGGGACCCG +
Preference number: 4 (lower is better)
Translates to: ASTGNIHGGQALTASAISSKTLF*CASWDP
Trigger: CGGGTCCCAGGATGCGCACCAGAAGAGAGTCTTACT...GCTGATGGCCGAGGCTGTGAGTGCCTGGCCCCCATGGATGTTCCCCGTGCTCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp AGGAGGGACAGGTCACGAGGCTGGAAGAGTGAGGAGAATGTGCAGGTGGCCCGTAGCAGTGGACCACCCTaGGGGAGGCCCACAGACACC +
Preference number: 4 (lower is better)
Translates to: RRDRSRGWKSEENVQVARSSGPP*GRPTDT
Trigger: GGTGTCTGTGGGCCTCCCCCAGGGTGGTCCACTGCT...ACGGGCCACCTGCACATTCTCCTCACTCTTCCAGCCTCGTGACCTGTCCCTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp ATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATGAGAGTGGTGGCAGCTaGGGCCCCCGAGTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: MALGVPQHPGSRGYKSLHESGGS*GPRVRL
Trigger: CAGCCTGACTCGGGGGCCCCAGCTGCCACCACTCTC...ATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCAGGTGGGAGACTGGGTaGCAGGTGACCCTGCACTCG +
Preference number: 4 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLRWETG*QVTLHS
Trigger: CGAGTGCAGGGTCACCTGCCACCCAGTCTCCCACCT...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCGGAGAGGTGGGAGACTaGGTGGCAGGTGACCCTGCA +
Preference number: 4 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLGEVGD*VAGDPA
Trigger: TGCAGGGTCACCTGCCACCCAGTCTCCCACCTCTCC...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp GCGAGCACGGGGAACATCCATGGGGGCCAGGCACTCACAGCCTCGGCCATCAGCTCCATCATGTTGAACTaGTCCAGCTGGCGGGACAGA +
Preference number: 4 (lower is better)
Translates to: ASTGNIHGGQALTASAISSIMLN*SSWRDR
Trigger: TCTGTCCCGCCAGCTGGAGCAGTTCAACATGATGGA...GCTGATGGCCGAGGCTGTGAGTGCCTGGCCCCCATGGATGTTCCCCGTGCTCGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp AGGAGGGACAGGTCACGAGGCTGGAAGAGTGAGGAGAATGTGCAGGTGGCCCGTCACCTGTGGAGGTGGTaGCTGCTGCTGGGATACCGG +
Preference number: 4 (lower is better)
Translates to: RRDRSRGWKSEENVQVARHLWRW*LLLGYR
Trigger: CCGGTATCCCAGCAGCAGCCACCACCTCCACAGGTG...ACGGGCCACCTGCACATTCTCCTCACTCTTCCAGCCTCGTGACCTGTCCCTCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp CCCATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCGGCGGGACAGAGCATTaGCCTGCCTGGCTGTCATCT +
Preference number: 4 (lower is better)
Translates to: PMALGVPQHPGSRGYKSLGGTEH*PAWLSS
Trigger: AGATGACAGCCAGGCAGGCCAATGCTCTGTCCCGCC...GAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCATGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp GGCACTGGGCAGCATTGCAAGCTCAGAACCACAAGCTaGGCCGTTGGCAAAGGGGGACGCCATTGCCGTCCC +
Preference number: 4 (lower is better)
Translates to: GTGQHCKLRTTS*AVGKGGRHCRP
Trigger: GGGACGGCAATGGCGTCCCCCTTTGCCAACGGCCAAGCTTGTGGTTCTGAGCTTGCAATGCTGCCCAGTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp AGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCTTCTGCCCTGACAGGGAGGCCAACGCCCAGATGTaGAAGGCTGCCGGTGCTGCT +
Preference number: 4 (lower is better)
Translates to: STQAREDTSPSIFCPDREANAQM*KAAGAA
Trigger: AGCAGCACCGGCAGCCTTGCACATCTGGGCGTTGGC...CTCCCTGTCAGGGCAGAAGATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp ATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATACGACTGCTGGCCGGTaGTGTGGAGAAGAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: MALGVPQHPGSRGYKSLHTTAGR*CGEELG
Trigger: CCCCAGCTCTTCTCCACAGCACCGGCCAGCAGTCGT...ATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp AGGAGGGACAGGTCACGAGGCTGGAAGAGTGAGGAGAATGTGCAGGTGGCCCGTGGACCTCACAGGACTTaGGCCTGGAACCCGCCTTCT +
Preference number: 4 (lower is better)
Translates to: RRDRSRGWKSEENVQVARGPHRT*AWNPPS
Trigger: AGAAGGCGGGTTCCAGGCCCAAGTCCTGTGAGGTCC...ACGGGCCACCTGCACATTCTCCTCACTCTTCCAGCCTCGTGACCTGTCCCTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GCTCAGACTTCTACAGCTGGAAGAGAGTCCCACCCCACTTCTGTGTGCTTTCCAGGCACTGGGCAGCAGTaGACCACCCTGGGGGAGGCC +
Preference number: 4 (lower is better)
Translates to: AQTSTAGRESHPTSVCFPGTGQQ*TTLGEA
Trigger: GGCCTCCCCCAGGGTGGTCCACTGCTGCCCAGTGCC...TGGAAAGCACACAGAAGTGGGGTGGGACTCTCTTCCAGCTGTAGAAGTCTGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GCGAGCACGGGGAACATCCATGGGGGCCAGGCACTCACAGCCTCGGCCATCAGCGGGTCATTCAACATATaGAGTCCGTCCAGGGTCAGA +
Preference number: 4 (lower is better)
Translates to: ASTGNIHGGQALTASAISGSFNI*SPSRVR
Trigger: TCTGACCCTGGACGGACTCCATATGTTGAATGACCC...GCTGATGGCCGAGGCTGTGAGTGCCTGGCCCCCATGGATGTTCCCCGTGCTCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp ATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATAGAGAGGCTCGGTGGTaGCTCTCCTGTCACCGTGAG +
Preference number: 4 (lower is better)
Translates to: MALGVPQHPGSRGYKSLHREARW*LSCHRE
Trigger: CTCACGGTGACAGGAGAGTCACCACCGAGCCTCTCT...ATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp ATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATGGTGGACGTGTGCTGTaGGGAGCTTCCAGGGGAGAA +
Preference number: 4 (lower is better)
Translates to: MALGVPQHPGSRGYKSLHGGRVL*GASRGE
Trigger: TTCTCCCCTGGAAGCTCCCCACAGCACACGTCCACC...ATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp AGGAGGGACAGGTCACGAGGCTGGAAGAGTGAGGAGAATGTGCAGGTGGCCCGTTTGAACTGCTCCAGCTaGCGGGACAGAGCATTGGCC +
Preference number: 4 (lower is better)
Translates to: RRDRSRGWKSEENVQVARLNCSS*RDRALA
Trigger: GGCCAATGCTCTGTCCCGCCAGCTGGAGCAGTTCAA...ACGGGCCACCTGCACATTCTCCTCACTCTTCCAGCCTCGTGACCTGTCCCTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp GGCAGCATTGCAAGCTCAGAACCACAAGCTTGGCCGTaGGCAAAGGGGGACGCCATTGCCGTCCCCAGGTTT +
Preference number: 4 (lower is better)
Translates to: GSIASSEPQAWP*AKGDAIAVPRF
Trigger: AAACCTGGGGACGGCAATGGCGTCCCCCTTTGCCAACGGCCAAGCTTGTGGTTCTGAGCTTGCAATGCTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp ATCCAGCCCCATCCTTGCCCACCCAGCTCTCTGGAGTaGAGACTAAATGCCAGTACGCCCAGGTCCAGGGTG +
Preference number: 4 (lower is better)
Translates to: IQPHPCPPSSLE*RLNASTPRSRV
Trigger: CACCCTGGACCTGGGCGTACTGGCATTTAGTCTCAACTCCAGAGAGCTGGGTGGGCAAGGATGGGGCTGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp GCTGACACTGGTGCAGGTTTGCTGTCCCCATGCCTTTaGCCCGTTCTTGTCCTGACCGGAGTGCCAGGACTC +
Preference number: 4 (lower is better)
Translates to: ADTGAGLLSPCL*PVLVLTGVPGL
Trigger: GAGTCCTGGCACTCCGGTCAGGACAAGAACGGGCAAAAGGCATGGGGACAGCAAACCTGCACCAGTGTCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp AGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCTTCTGCCCTGACAGGGAGGGATGGTACAGTAACTaGGAGTGGTGGCAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: STQAREDTSPSIFCPDREGWYSN*EWWQLG
Trigger: CCCCAGCTGCCACCACTCTCAGTTACTGTACCATCC...CTCCCTGTCAGGGCAGAAGATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp AGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCTTCTGCCCTGACAGGGAGCAGCCTGGGAATAGTTaGGTGTGGAGCCCGGGTTGT +
Preference number: 4 (lower is better)
Translates to: STQAREDTSPSIFCPDREQPGNS*VWSPGC
Trigger: ACAACCCGGGCTCCACACTCAACTATTCCCAGGCTG...CTCCCTGTCAGGGCAGAAGATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp GCTCAGACTTCTACAGCTGGAAGAGAGTCCCACCCCACTTCTGTGTGCTTTCCACGGCTGGGGCCCAGCTaGAGGTACTGGGACTTCTGC +
Preference number: 4 (lower is better)
Translates to: AQTSTAGRESHPTSVCFPRLGPS*RYWDFC
Trigger: GCAGAAGTCCCAGTACCTGCAGCTGGGCCCCAGCCG...TGGAAAGCACACAGAAGTGGGGTGGGACTCTCTTCCAGCTGTAGAAGTCTGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp AGGAGGGACAGGTCACGAGGCTGGAAGAGTGAGGAGAATGTGCAGGTGGCCCGTCACAGGACTTGGGCCTaGAACCCGCCTTCTTTGAGT +
Preference number: 4 (lower is better)
Translates to: RRDRSRGWKSEENVQVARHRTWA*NPPSLS
Trigger: ACTCAAAGAAGGCGGGTTCCAGGCCCAAGTCCTGTG...ACGGGCCACCTGCACATTCTCCTCACTCTTCCAGCCTCGTGACCTGTCCCTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GGCTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTGAGCCCCCTGTGTTGTaGGTGGCAGGGATCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GWVQLHCCSVGLWVDCQGEPPVL*VAGIRA
Trigger: AGCCCTGATCCCTGCCACCCACAACACAGGGGGCTC...ACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GTGGCCCGTGACCCTCCATCCCAGTGCCACCATACTGACCTTTGTCCAACAGGGATCCCCATTGGTGACTaGCCTGGGTTCTCTGTAGGG +
Preference number: 4 (lower is better)
Translates to: VARDPPSQCHHTDLCPTGIPIGD*PGFSVG
Trigger: CCCTACAGAGAACCCAGGCCAGTCACCAATGGGGAT...CCCTGTTGGACAAAGGTCAGTATGGTGGCACTGGGATGGAGGGTCACGGGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GGCTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTTGGAGACCGGAGAGGTaGGAGACTGGGTGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: GWVQLHCCSVGLWVDCQGWRPER*ETGWQV
Trigger: CACCTGCCACCCAGTCTCCCACCTCTCCGGTCTCCA...ACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp GCTCAGACTTCTACAGCTGGAAGAGAGTCCCACCCCACTTCTGTGTGCTTTCCAGGCCTGAGTGATGGGTaGCAACGGAGACAGGGTGGG +
Preference number: 4 (lower is better)
Translates to: AQTSTAGRESHPTSVCFPGLSDG*QRRQGG
Trigger: CCCACCCTGTCTCCGTTGTCACCCATCACTCAGGCC...TGGAAAGCACACAGAAGTGGGGTGGGACTCTCTTCCAGCTGTAGAAGTCTGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp AGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCTTCTGCCCTGACAGGGAGTCCTCCGCCTGCTTCTaGTTGTGCAGTGCGATCTTC +
Preference number: 4 (lower is better)
Translates to: STQAREDTSPSIFCPDRESSACF*LCSAIF
Trigger: GAAGATCGCACTGCACAACCAGAAGCAGGCGGAGGA...CTCCCTGTCAGGGCAGAAGATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp ATGGCCTTGGGAGTACCCCAGCACCCAGGCTCGAGAGGATACAAGTCCCTCCATCTGCTGCTTCCAATCTaGTTCACGTTGGGCAGGGAC +
Preference number: 4 (lower is better)
Translates to: MALGVPQHPGSRGYKSLHLLLPI*FTLGRD
Trigger: GTCCCTGCCCAACGTGAACCAGATTGGAAGCAGCAG...ATGGAGGGACTTGTATCCTCTCGAGCCTGGGTGCTGGGGTACTCCCAAGGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp GCCCAGGTCCAGGGTGAGCAGCCCAGGTGCCCCAGCTaGCAAGTGCTCCAGGCTAGTATTCCAGTTAACTTT +
Preference number: 4 (lower is better)
Translates to: AQVQGEQPRCPS*QVLQASIPVNF
Trigger: AAAGTTAACTGGAATACTAGCCTGGAGCACTTGCAAGCTGGGGCACCTGGGCTGCTCACCCTGGACCTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp CTGGACTCCAGGTACCCTGTCAGCCTCTCGGCCCTGTaGAGGCCGTTTGCTCAGACTTCTACAGCTGGAAGA +
Preference number: 4 (lower is better)
Translates to: LDSRYPVSLSAL*RPFAQTSTAGR
Trigger: TCTTCCAGCTGTAGAAGTCTGAGCAAACGGCCTCAACAGGGCCGAGAGGCTGACAGGGTACCTGGAGTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GGCTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTGGAAGGTGTCCTCGGTaGCTGGGTCGGCTAAAACCA +
Preference number: 4 (lower is better)
Translates to: GWVQLHCCSVGLWVDCQGGRCPR*LGRLKP
Trigger: TGGTTTTAGCCGACCCAGCCACCGAGGACACCTTCC...ACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTCAGTGGTGTCGGGAGTaGGGAGGGGAAGTGGATGTT +
Preference number: 4 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFQWCRE*GGEVDV
Trigger: AACATCCACTTCCCCTCCCCACTCCCGACACCACTG...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp GCTCAGACTTCTACAGCTGGAAGAGAGTCCCACCCCACTTCTGTGTGCTTTCCAGCTGTGGAGAAGAGCTaGGGGTGTTCATACCCTGGC +
Preference number: 4 (lower is better)
Translates to: AQTSTAGRESHPTSVCFPAVEKS*GCSYPG
Trigger: GCCAGGGTATGAACACCCCCAGCTCTTCTCCACAGC...TGGAAAGCACACAGAAGTGGGGTGGGACTCTCTTCCAGCTGTAGAAGTCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp CACGCTGCAAGAGCGCTCAGGAATATAAAAGGCAGCCATCCAAACAGTGTTTATGGATACCGGTGGAGGTaGAGGCGGTGGCTGGGGCTG +
Preference number: 4 (lower is better)
Translates to: HAARALRNIKGSHPNSVYGYRWR*RRWLGL
Trigger: CAGCCCCAGCCACCGCCTCCACCTCCACCGGTATCC...ATAAACACTGTTTGGATGGCTGCCTTTTATATTCCTGAGCGCTCTTGCAGCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp CACGCTGCAAGAGCGCTCAGGAATATAAAAGGCAGCCATCCAAACAGTGTTTATGCCCCCGAGTCAGGCTaGCACTGGGCAGCAGTGGAC +
Preference number: 4 (lower is better)
Translates to: HAARALRNIKGSHPNSVYAPESG*HWAAVD
Trigger: GTCCACTGCTGCCCAGTGCCAGCCTGACTCGGGGGC...ATAAACACTGTTTGGATGGCTGCCTTTTATATTCCTGAGCGCTCTTGCAGCGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp GTGGTGACAGAAAGGCCTGAGACCTGGACAGGTGACTaGGACAAAGCAATGCTGTGTCTTCAGACCCAGGGG +
Preference number: 4 (lower is better)
Translates to: VVTERPETWTGD*DKAMLCLQTQG
Trigger: CCCCTGGGTCTGAAGACACAGCATTGCTTTGTCCAAGTCACCTGTCCAGGTCTCAGGCCTTTCTGTCACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp ACTGTGAGAAGAACGGCAGCTGACACTGGTGCAGGTTaGCTGTCCCCATGCCTTTTGCCCGTTCTTGTCCTG +
Preference number: 4 (lower is better)
Translates to: TVRRTAADTGAG*LSPCLLPVLVL
Trigger: CAGGACAAGAACGGGCAAAAGGCATGGGGACAGCAAACCTGCACCAGTGTCAGCTGCCGTTCTTCTCACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATCGGAGACAGGGTGGGTaGCACCTGCTGGGCCTGCTG +
Preference number: 4 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYRRQGG*HLLGLL
Trigger: CAGCAGGCCCAGCAGGTGTCACCCACCCTGTCTCCG...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp GGCTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTGCCTGCTTCTGGTTGTaGAGTGCGATCTTCTCGCTA +
Preference number: 4 (lower is better)
Translates to: GWVQLHCCSVGLWVDCQGACFWL*SAIFSL
Trigger: TAGCGAGAAGATCGCACTGCACAACCAGAAGCAGGC...ACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp ATAGAGTTATCAAGATGCCCCAGTCCTGTTTCTGAGTCAGGGAAGTGGGCTGGATGCTGGCCGGTGCTGTaGAGAAGAGCTGGGGGTGTT +
Preference number: 4 (lower is better)
Translates to: IELSRCPSPVSESGKWAGCWPVL*RRAGGV
Trigger: AACACCCCCAGCTCTTCTCCACAGCACCGGCCAGCA...TCCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGGCATCTTGATAACTCTAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATGGGCCTGCTGCCGCCTaGCCTCTGTGCTCAGGGACA +
Preference number: 4 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYGPAAA*PLCSGT
Trigger: TGTCCCTGAGCACAGAGGCCAGGCGGCAGCAGGCCC...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp AGTATCTGCATGTCACCAGCTGAGGCCCCCACGGCCTaGAGCTATCATCTTGGGATGTCTTGGCAATACAGG +
Preference number: 4 (lower is better)
Translates to: SICMSPAEAPTA*SYHLGMSWQYR
Trigger: CCTGTATTGCCAAGACATCCCAAGATGATAGCTCAAGGCCGTGGGGGCCTCAGCTGGTGACATGCAGATACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTATAGGCTGCTGGAGCTaGTGGCGTTCTCCATCATGT +
Preference number: 4 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFIGCWS*WRSPSC
Trigger: ACATGATGGAGAACGCCATCAGCTCCAGCAGCCTAT...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp GTGGCCCGTGACCCTCCATCCCAGTGCCACCATACTGACCTTTGTCCAACAGGGTTTGAGTCCCATGACTaGTTAGAAAGGGTCTTGTCT +
Preference number: 4 (lower is better)
Translates to: VARDPPSQCHHTDLCPTGFESHD*LERVLS
Trigger: AGACAAGACCCTTTCTAAGCAGTCATGGGACTCAAA...CCCTGTTGGACAAAGGTCAGTATGGTGGCACTGGGATGGAGGGTCACGGGCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATCTGCTGGGATACCGGTaGAGGTGGAGGCGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYLLGYR*RWRRWL
Trigger: CAGCCACCGCCTCCACCTCCACCGGTATCCCAGCAG...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR TCA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATGGAAGTGGATGTTGGTaGGGTCAGGAAGGGAGCCCC +
Preference number: 4 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYGSGCW*GQEGSP
Trigger: GGGGCTCCCTTCCTGACCTCACCAACATCCACTTCC...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp CACGCTGCAAGAGCGCTCAGGAATATAAAAGGCAGCCATCCAAACAGTGTTTATAAGACTCTCTTCTGGTaGGCATCCTGGGACCCGCCT +
Preference number: 4 (lower is better)
Translates to: HAARALRNIKGSHPNSVYKTLFW*ASWDPP
Trigger: AGGCGGGTCCCAGGATGCGCACCAGAAGAGAGTCTT...ATAAACACTGTTTGGATGGCTGCCTTTTATATTCCTGAGCGCTCTTGCAGCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp CCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATaGCCAAGGTTAACTGAGGCAGCTGGGCATAGAGTT +
Preference number: 4 (lower is better)
Translates to: PAALLFCGALGR*PRLTEAAGHRV
Trigger: AACTCTATGCCCAGCTGCCTCAGTTAACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CCA 90 bp ATAGAGTTATCAAGATGCCCCAGTCCTGTTTCTGAGTCAGGGAAGTGGGCTGGATTCTCTGTAGGGGACTaGGGAAGAGTGGATGGTACA +
Preference number: 4 (lower is better)
Translates to: IELSRCPSPVSESGKWAGFSVGD*GRVDGT
Trigger: TGTACCATCCACTCTTCCCCAGTCCCCTACAGAGAA...TCCAGCCCACTTCCCTGACTCAGAAACAGGACTGGGGCATCTTGATAACTCTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
3UTR CAA 72 bp TTAGGATATAGAAAGGGGCTGGGTCCAGCTGCATTGTaGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTTA +
Preference number: 4 (lower is better)
Translates to: LGYRKGLGPAAL*FCGALGRLPRL
Trigger: TAACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCCCCTTTCTATATCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp CTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTTACTTCTGGTTGTGCAGTaGGATCTTCTCGCTAAATTT +
Preference number: 4 (lower is better)
Translates to: LGPAALLFCGALGRLPRLLLVVQ*DLLAKF
Trigger: AAATTTAGCGAGAAGATCGCACTGCACAACCAGAAG...TAACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR GCA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATTGTGTTCTCCTGGTCTaGAGACGGAAAGATGTTGAT +
Preference number: 4 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYCVLLV*RRKDVD
Trigger: ATCAACATCTTTCCGTCTGCAGACCAGGAGAACACA...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS GCA 90 bp CCACCCTGGGGGAGGCCCACAGACACCTGTGGAGGTGGTGGCTGCTaGTGGGATACCGGTGGAGGTGGAGGCGGTGGCTGGGGCTGTGGG +
Preference number: 5 (lower is better)
Translates to: PPWGRPTDTCGGGGC*WDTGGGGGGGWGCG
Trigger: CCCACAGCCCCAGCCACCGCCTCCACCTCCACCGGTATCCCAGCAGCAGCCACCACCTCCACAGGTGTCTGTGGGCCTCCCCCAGGGTGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS GCA 90 bp GGACCACCCTGGGGGAGGCCCACAGACACCTGTGGAGGTGGTGGCTaGTGCTGGGATACCGGTGGAGGTGGAGGCGGTGGCTGGGGCTGT +
Preference number: 5 (lower is better)
Translates to: GPPWGRPTDTCGGGG*CWDTGGGGGGGWGC
Trigger: ACAGCCCCAGCCACCGCCTCCACCTCCACCGGTATCCCAGCAGCAGCCACCACCTCCACAGGTGTCTGTGGGCCTCCCCCAGGGTGGTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS CCA 90 bp CAGTGGACCACCCTGGGGGAGGCCCACAGACACCTGTGGAGGTGGTaGCTGCTGCTGGGATACCGGTGGAGGTGGAGGCGGTGGCTGGGG +
Preference number: 5 (lower is better)
Translates to: QWTTLGEAHRHLWRW*LLLGYRWRWRRWLG
Trigger: CCCCAGCCACCGCCTCCACCTCCACCGGTATCCCAGCAGCAGCCACCACCTCCACAGGTGTCTGTGGGCCTCCCCCAGGGTGGTCCACTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CAA 90 bp GGGCGGGCGGCCGTGCGTGCCCTGAGCAACCTGACCCCCAACTGCGGTGCCCATCCTGGCTGGGTGTCATaGTGCTCTGGTGCAGGGCAG +
Preference number: 5 (lower is better)
Translates to: GRAAVRALSNLTPNCGAHPGWVS*CSGAGQ
Trigger: CTGCCCTGCACCAGAGCACAATGACACCCAGCCAGG...ATGGGCACCGCAGTTGGGGGTCAGGTTGCTCAGGGCACGCACGGCCGCCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS CCA 90 bp CAGCAGTGGACCACCCTGGGGGAGGCCCACAGACACCTGTGGAGGTaGTGGCTGCTGCTGGGATACCGGTGGAGGTGGAGGCGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: QQWTTLGEAHRHLWR*WLLLGYRWRWRRWL
Trigger: CAGCCACCGCCTCCACCTCCACCGGTATCCCAGCAGCAGCCACCACCTCCACAGGTGTCTGTGGGCCTCCCCCAGGGTGGTCCACTGCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS CCA 90 bp ACTGCTGGCCGGTGCTGTGGAGAAGAGCTGGGGGTGTTCATACCCTaGCCTGCGCCGCCAACGCCCAGATGTGCAAGGCTGCCGGTGCTG +
Preference number: 5 (lower is better)
Translates to: TAGRCCGEELGVFIP*PAPPTPRCARLPVL
Trigger: CAGCACCGGCAGCCTTGCACATCTGGGCGTTGGCGGCGCAGGCCAGGGTATGAACACCCCCAGCTCTTCTCCACAGCACCGGCCAGCAGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CAA 90 bp GCCTCCCGAGCCCCAGATCCTAAACAGCAGGAGGGACAGGTCACGAGGCTGGAAAGGGAGCCCCCTGTGTaGTGGGTGGCAGGGATCAGG +
Preference number: 5 (lower is better)
Translates to: ASRAPDPKQQEGQVTRLEREPPV*WVAGIR
Trigger: CCTGATCCCTGCCACCCACAACACAGGGGGCTCCCT...TTCCAGCCTCGTGACCTGTCCCTCCTGCTGTTTAGGATCTGGGGCTCGGGAGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CAA 90 bp GTGGCCCGTGACCCTCCATCCCAGTGCCACCATACTGACCTTTGTCCAACAGGGGGGACCTCACAGGACTaGGGCCTGGAACCCGCCTTC +
Preference number: 5 (lower is better)
Translates to: VARDPPSQCHHTDLCPTGGTSQD*GLEPAF
Trigger: GAAGGCGGGTTCCAGGCCCAAGTCCTGTGAGGTCCC...CCCTGTTGGACAAAGGTCAGTATGGTGGCACTGGGATGGAGGGTCACGGGCCAC
63% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS GCA 90 bp CTGTCAGCCTGTCGCCCATGCTTGTCTACTGACAGGGGTCGACGGTaGGGGGAGCCAAGTCTGCCACGCTCACGATATACTCTGTCCACA +
Preference number: 5 (lower is better)
Translates to: LSACRPCLSTDRGRR*GEPSLPRSRYTLST
Trigger: TGTGGACAGAGTATATCGTGAGCGTGGCAGACTTGGCTCCCCGCACCGTCGACCCCTGTCAGTAGACAAGCATGGGCGACAGGCTGACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CAA 90 bp GGAACCAGCCATTTGCATATATCAAAGGGGCACCCCAGCCCATGGCGTCCTTTTAGTGTGGAGCCCGGGTaGTATAGGCTGCTGGAGCTG +
Preference number: 5 (lower is better)
Translates to: GTSHLHISKGHPSPWRPFSVEPG*YRLLEL
Trigger: CAGCTCCAGCAGCCTATACAACCCGGGCTCCACACT...AAAAGGACGCCATGGGCTGGGGTGCCCCTTTGATATATGCAAATGGCTGGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CAA 90 bp GGCTGGGTCCAGCTGCATTGTTGTTCTGTGGGGCTTTGGGTAGATTGCCAAGGTGCAGACGGAAAGATGTaGATTCCGGGGACCTCACAG +
Preference number: 5 (lower is better)
Translates to: GWVQLHCCSVGLWVDCQGADGKM*IPGTSQ
Trigger: CTGTGAGGTCCCCGGAATCAACATCTTTCCGTCTGC...ACCTTGGCAATCTACCCAAAGCCCCACAGAACAACAATGCAGCTGGACCCAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS TCA 90 bp CCGTCCAGGGTCAGAGGGTCAATCTTCAGCTCGTCCAGTGGAAACTaGTGGTCTGAATCAAAGCTGACATCACTGACTCCTGCCAGTGTG +
Preference number: 5 (lower is better)
Translates to: PSRVRGSIFSSSSGN*WSESKLTSLTPASV
Trigger: CACACTGGCAGGAGTCAGTGATGTCAGCTTTGATTCAGACCATCAGTTTCCACTGGACGAGCTGAAGATTGACCCTCTGACCCTGGACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS TCA 90 bp GGTCAGAGGGTCAATCTTCAGCTCGTCCAGTGGAAACTGATGGTCTaGATCAAAGCTGACATCACTGACTCCTGCCAGTGTGCTGCTCAG +
Preference number: 5 (lower is better)
Translates to: GQRVNLQLVQWKLMV*IKADITDSCQCAAQ
Trigger: CTGAGCAGCACACTGGCAGGAGTCAGTGATGTCAGCTTTGATTCAGACCATCAGTTTCCACTGGACGAGCTGAAGATTGACCCTCTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS-3UTR CAA 90 bp TATCATCTTGGGATGTCTTGGCAATACAGGGGTATTATCGGACAGGTGACCTATTCCGCCTGCTTCTGGTaGTGCAGTGCGATCTTCTCG +
Preference number: 5 (lower is better)
Translates to: YHLGMSWQYRGIIGQVTYSACFW*CSAIFS
Trigger: CGAGAAGATCGCACTGCACAACCAGAAGCAGGCGGA...ATAGGTCACCTGTCCGATAATACCCCTGTATTGCCAAGACATCCCAAGATGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS GCA 72 bp GGGAGGCCCACAGACACCTGTGGAGGTGGTGGCTGCTaGTGGGATACCGGTGGAGGTGGAGGCGGTGGCTGG +
Preference number: 6 (lower is better)
Translates to: GRPTDTCGGGGC*WDTGGGGGGGW
Trigger: CCAGCCACCGCCTCCACCTCCACCGGTATCCCAGCAGCAGCCACCACCTCCACAGGTGTCTGTGGGCCTCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS GCA 72 bp TGGGGGAGGCCCACAGACACCTGTGGAGGTGGTGGCTaGTGCTGGGATACCGGTGGAGGTGGAGGCGGTGGC +
Preference number: 6 (lower is better)
Translates to: WGRPTDTCGGGG*CWDTGGGGGGG
Trigger: GCCACCGCCTCCACCTCCACCGGTATCCCAGCAGCAGCCACCACCTCCACAGGTGTCTGTGGGCCTCCCCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS CCA 72 bp ACCCTGGGGGAGGCCCACAGACACCTGTGGAGGTGGTaGCTGCTGCTGGGATACCGGTGGAGGTGGAGGCGG +
Preference number: 6 (lower is better)
Translates to: TLGEAHRHLWRW*LLLGYRWRWRR
Trigger: CCGCCTCCACCTCCACCGGTATCCCAGCAGCAGCCACCACCTCCACAGGTGTCTGTGGGCCTCCCCCAGGGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS CCA 72 bp CAGTGGACCACCCTGGGGGAGGCCCACAGACACCTGTaGAGGTGGTGGCTGCTGCTGGGATACCGGTGGAGG +
Preference number: 6 (lower is better)
Translates to: QWTTLGEAHRHL*RWWLLLGYRWR
Trigger: CCTCCACCGGTATCCCAGCAGCAGCCACCACCTCCACAGGTGTCTGTGGGCCTCCCCCAGGGTGGTCCACTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS GCA 72 bp CTGTGGAGAAGAGCTGGGGGTGTTCATACCCTGGCCTaGGCCGCCAACGCCCAGATGTGCAAGGCTGCCGGT +
Preference number: 6 (lower is better)
Translates to: LWRRAGGVHTLA*AANAQMCKAAG
Trigger: ACCGGCAGCCTTGCACATCTGGGCGTTGGCGGCGCAGGCCAGGGTATGAACACCCCCAGCTCTTCTCCACAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS CCA 72 bp CGGTGCTGTGGAGAAGAGCTGGGGGTGTTCATACCCTaGCCTGCGCCGCCAACGCCCAGATGTGCAAGGCTG +
Preference number: 6 (lower is better)
Translates to: RCCGEELGVFIP*PAPPTPRCARL
Trigger: CAGCCTTGCACATCTGGGCGTTGGCGGCGCAGGCCAGGGTATGAACACCCCCAGCTCTTCTCCACAGCACCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS GCA 72 bp AGGTGGGAGACTGGGTGGCAGGTGACCCTGCACTCGTaGGGTACTGCAGAGCTGGTGCCGAAGTGGCATCGA +
Preference number: 6 (lower is better)
Translates to: RWETGWQVTLHS*GTAELVPKWHR
Trigger: TCGATGCCACTTCGGCACCAGCTCTGCAGTACCGCACGAGTGCAGGGTCACCTGCCACCCAGTCTCCCACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS CCA 72 bp GGTGCAGGGCAGAGTCAGAGTTGGTCCTCCTCCAGCTaGTGTCCGCAGGAGGCGAGAGGTACACGGTGCCAT +
Preference number: 6 (lower is better)
Translates to: GAGQSQSWSSSS*CPQEARGTRCH
Trigger: ATGGCACCGTGTACCTCTCGCCTCCTGCGGACACCAGCTGGAGGAGGACCAACTCTGACTCTGCCCTGCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS TCA 72 bp TGCTGCTCCAAGGACAGGGCATCCATAGCCACGGCCTaGGTGATGGGTGACAACGGAGACAGGGTGGGTGAC +
Preference number: 6 (lower is better)
Translates to: CCSKDRASIATA*VMGDNGDRVGD
Trigger: GTCACCCACCCTGTCTCCGTTGTCACCCATCACTCAGGCCGTGGCTATGGATGCCCTGTCCTTGGAGCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS TCA 72 bp TCCCGCTCAGACCCATCATGGCAGCCTGGGAATAGTTaGGTGTGGAGCCCGGGTTGTATAGGCTGCTGGAGC +
Preference number: 6 (lower is better)
Translates to: SRSDPSWQPGNS*VWSPGCIGCWS
Trigger: GCTCCAGCAGCCTATACAACCCGGGCTCCACACTCAACTATTCCCAGGCTGCCATGATGGGTCTGAGCGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS GCA 72 bp TGTCGCCCATGCTTGTCTACTGACAGGGGTCGACGGTaGGGGGAGCCAAGTCTGCCACGCTCACGATATACT +
Preference number: 6 (lower is better)
Translates to: CRPCLSTDRGRR*GEPSLPRSRYT
Trigger: AGTATATCGTGAGCGTGGCAGACTTGGCTCCCCGCACCGTCGACCCCTGTCAGTAGACAAGCATGGGCGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS GCA 72 bp TTGGGCCTGGAACCCGCCTTCTTTGAGTCCCATGACTaGTTAGAAAGGGTCTTGTCTGTCTCAGCCCCGGTG +
Preference number: 6 (lower is better)
Translates to: LGLEPAFFESHD*LERVLSVSAPV
Trigger: CACCGGGGCTGAGACAGACAAGACCCTTTCTAAGCAGTCATGGGACTCAAAGAAGGCGGGTTCCAGGCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS TCA 72 bp CTGTTGTGTTCTCCTGGTCTGCAGACGGAAAGATGTTaGTTCCGGGGACCTCACAGGACTTGGGCCTGGAAC +
Preference number: 6 (lower is better)
Translates to: LLCSPGLQTERC*FRGPHRTWAWN
Trigger: GTTCCAGGCCCAAGTCCTGTGAGGTCCCCGGAATCAACATCTTTCCGTCTGCAGACCAGGAGAACACAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS CCA 72 bp CCCATTGGTGACTGGCCTGGGTTCTCTGTAGGGGACTaGGGAAGAGTGGATGGTACAGTAACTGAGAGTGGT +
Preference number: 6 (lower is better)
Translates to: PIGDWPGFSVGD*GRVDGTVTESG
Trigger: ACCACTCTCAGTTACTGTACCATCCACTCTTCCCCAGTCCCCTACAGAGAACCCAGGCCAGTCACCAATGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS CAA 72 bp GCTGTTGTGTTCTCCTGGTCTGCAGACGGAAAGATGTaGATTCCGGGGACCTCACAGGACTTGGGCCTGGAA +
Preference number: 6 (lower is better)
Translates to: AVVFSWSADGKM*IPGTSQDLGLE
Trigger: TTCCAGGCCCAAGTCCTGTGAGGTCCCCGGAATCAACATCTTTCCGTCTGCAGACCAGGAGAACACAACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS TCA 72 bp GTCAATCTTCAGCTCGTCCAGTGGAAACTGATGGTCTaGATCAAAGCTGACATCACTGACTCCTGCCAGTGT +
Preference number: 6 (lower is better)
Translates to: VNLQLVQWKLMV*IKADITDSCQC
Trigger: ACACTGGCAGGAGTCAGTGATGTCAGCTTTGATTCAGACCATCAGTTTCCACTGGACGAGCTGAAGATTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6
CDS TCA 72 bp GTCAGAGGGTCAATCTTCAGCTCGTCCAGTGGAAACTaGTGGTCTGAATCAAAGCTGACATCACTGACTCCT +
Preference number: 6 (lower is better)
Translates to: VRGSIFSSSSGN*WSESKLTSLTP
Trigger: AGGAGTCAGTGATGTCAGCTTTGATTCAGACCATCAGTTTCCACTGGACGAGCTGAAGATTGACCCTCTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000076615.6