RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CROCC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040860

Ensembl transcript IDs: ENSMUST00000040222.14, ENSMUST00000097816.9, ENSMUST00000102491.10, ENSMUST00000144196.2, ENSMUST00000168157.8

Found 602 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTaGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACC +
Preference number: 1 (lower is better)
Translates to: SATPAPSHSTLMTRP*AGYATKGVSPAQGT
Trigger: GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR GCA 90 bp AGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATaGTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGGACT +
Preference number: 1 (lower is better)
Translates to: SSLTQHSDDQALGRL*YKGCLSCPGDLLRT
Trigger: AGTCCTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR CCA 90 bp CTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTaGCCCCTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCT +
Preference number: 1 (lower is better)
Translates to: LGKPCSAAARNKCSP*PLAGSCSLGPSRGS
Trigger: AGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR CCA 90 bp TTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTGGCTaGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGG +
Preference number: 1 (lower is better)
Translates to: LFCCCQKQVLSLAPG*LMQPWAIKRLFQER
Trigger: CCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR CCA 90 bp AGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTaGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGA +
Preference number: 1 (lower is better)
Translates to: SLVLLLPETSALPGP*LAHAALGHQEALPG
Trigger: TCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR GCA 90 bp CCCGGGGTAGTACAGGTTGTAGCAACTCTGAGAAGCCATCATCTCTaGCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTG +
Preference number: 1 (lower is better)
Translates to: PGVVQVVATLRSHHL*HPSSLTQHSDDQAL
Trigger: CAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCAGAGATGATGGCTTCTCAGAGTTGCTACAACCTGTACTACCCCGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTaGCCAGGGGACCTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYKGCLS*PGDLLR
Trigger: CCTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTT...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCAAAGGGTGTCTCTCCTaGCCAGGGGACCTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: LLTGCQGQTLGAALAQVAKGCLS*PGDLLR
Trigger: CCTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTT...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTAAAGGGTGTCTCTCCTaGCCAGGGGACCTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSKGCLS*PGDLLR
Trigger: CCTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTT...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGCCCCTGGCTGGCTCATaGAGCCTTGGGCCATCAAGA +
Preference number: 2 (lower is better)
Translates to: RELLTGCQGQTLGAALAQPLAGS*SLGPSR
Trigger: TCTTGATGGCCCAAGGCTGCATGAGCCAGCCAGGGG...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCCCCTGGCTGGCTCATaGAGCCTTGGGCCATCAAGA +
Preference number: 2 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSPLAGS*SLGPSR
Trigger: TCTTGATGGCCCAAGGCTGCATGAGCCAGCCAGGGG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGCTGCCAGAAACAAGTaGTCTCCCTGGCCCCTGGCT +
Preference number: 2 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSAARNK*SPWPLA
Trigger: AGCCAGGGGCCAGGGAGAGCACTTGTTTCTGGCAGC...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTAAAGGGTGTCTCTCCTaGCCAGGGGACCTGCTCAGG +
Preference number: 2 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPKGCLS*PGDLLR
Trigger: CCTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTT...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGCCTTGTTCTGCTGCTaGCAGAAACAAGTGCTCTCC +
Preference number: 2 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSALFCC*QKQVLS
Trigger: GGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGC...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTAGAAGCCATCATCTCTaGCACCCCAGCTCCCTCACA +
Preference number: 2 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSRSHHL*HPSSLT
Trigger: TGTGAGGGAGCTGGGGTGGCAGAGATGATGGCTTCT...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR GCA 72 bp ACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATaGTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTG +
Preference number: 3 (lower is better)
Translates to: TQHSDDQALGRL*YKGCLSCPGDL
Trigger: CAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR GCA 72 bp CTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTaGTCTCCCTGGCCCCTGGCTGGCTCATGCAGCCTT +
Preference number: 3 (lower is better)
Translates to: LGKPCSAAARNK*SPWPLAGSCSL
Trigger: AAGGCTGCATGAGCCAGCCAGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR CAA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCACTGGCTCATGCAGCCTaGGGCCATCAAGAGGCTCTT +
Preference number: 3 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSLAHAA*GHQEAL
Trigger: AAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAG...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR-3UTR CAA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTCTGGCTCATGCAGCCTaGGGCCATCAAGAGGCTCTT +
Preference number: 3 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSLAHAA*GHQEAL
Trigger: AAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAG...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR GCA 72 bp TCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTaGTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCT +
Preference number: 3 (lower is better)
Translates to: SGSGSLSGEALF*CCQKQVLSLAP
Trigger: AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR TCA 72 bp AAAAATACAAGGGCTCTAAGGTCACGAGGGAGCTTCTaGCAGGATGTCAAGGACAGACGCTGGGGGCTGCTC +
Preference number: 3 (lower is better)
Translates to: KNTRALRSRGSF*QDVKDRRWGLL
Trigger: GAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTCGTGACCTTAGAGCCCTTGTATTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGCCGCAGCCCCAGCTCTaGGGTCTCTGCCCGCACCGC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPPQPQL*GLCPHR
Trigger: GCGGTGCGGGCAGAGACCTCAGAGCTGGGGCTGCGG...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCCGCAGCCCCAGCTCTaGGGTCTCTGCCCGCACCGC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTPQPQL*GLCPHR
Trigger: GCGGTGCGGGCAGAGACCTCAGAGCTGGGGCTGCGG...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCGGCCCTGCAGGTCTaGCAGCTCCCGGCCCAGCCT +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYAALQV*QLPAQP
Trigger: AGGCTGGGCCGGGAGCTGGCAGACCTGCAGGGCCGC...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACAGGCGCCTCCCGGGCTaGGGAGCTGGACACTCGGCC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDRRLPG*GAGHSA
Trigger: GGCCGAGTGTCCAGCTCCCCAGCCCGGGAGGCGCCT...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTGGAGGGCCTGCGCATaGGCCTCCCGGTCCCCCAGG +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDWRACA*ASRSPR
Trigger: CCTGGGGGACCGGGAGGCCCATGCGCAGGCCCTCCA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGCCGTCGGAGCCCCATaGCCTGCCTCCAGAGGCGGA +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLAVGAP*PASRGG
Trigger: TCCGCCTCTGGAGGCAGGTCATGGGGCTCCGACGGC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACGCCGTCGGAGCCCCATaGCCTGCCTCCAGAGGCGGA +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDAVGAP*PASRGG
Trigger: TCCGCCTCTGGAGGCAGGTCATGGGGCTCCGACGGC...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGCGAATGGCCTCCTCTaGCAGGGTCCGGCCCTCCCG +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLANGLL*QGPALP
Trigger: CGGGAGGGCCGGACCCTGTCAGAGGAGGCCATTCGC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACCCGCAGCCCCAGCTCTaGGGTCTCTGCCCGCACCGC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYPQPQL*GLCPHR
Trigger: GCGGTGCGGGCAGAGACCTCAGAGCTGGGGCTGCGG...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCGGACAGCCCGGGATGTaGGGACGAGCTCCCCGCCCA +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTGQPGM*GRAPRP
Trigger: TGGGCGGGGAGCTCGTCCGCACATCCCGGGCTGTCC...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCATGCAGGCCTCCCGCTaGCGGCCCAGGTTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTMQASR*RPRFPV
Trigger: GACGGGGAACCTGGGCCGGCAGCGGGAGGCCTGCAT...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATAGGGCCAAGCGGCCCTaGAGGTCTGCCAGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYRAKRP*RSASSR
Trigger: CCGGGAGCTGGCAGACCTGCAGGGCCGCTTGGCCCT...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCCAGGCCGAGGCGGCTaGGCTGCAGCTCGCCCTCAA +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTPGRGG*AAARPQ
Trigger: TTGAGGGCGAGCTGCAGCGCAGCCGCCTCGGCCTGG...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTGGGCCAGGGCTCGCTaGAGACTGCCCAGGCGCTCC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDWARAR*RLPRRS
Trigger: GGAGCGCCTGGGCAGTCTGCAGCGAGCCCTGGCCCA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGGGCATGGGCGGCAGTaGCTTCCTCCAGCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLGHGRQ*LPPAGP
Trigger: GGGCCCAGCTGGAGGAAGCCACTGCCGCCCATGCCC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACGGGCCTCCCGCTCCTTaGCGCCCTCACTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDGPPAP*RPHSGC
Trigger: GCAGCCTGAGTGAGGGCGCCAAGGAGCGGGAGGCCC...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGAGGCGCCTCCCGGGCTaGGGAGCTGGACACTCGGCC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQRRLPG*GAGHSA
Trigger: GGCCGAGTGTCCAGCTCCCCAGCCCGGGAGGCGCCT...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTGGAGGGCCTGCGCATaGGCCTCCCGGTCCCCCAGG +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEAWRACA*ASRSPR
Trigger: CCTGGGGGACCGGGAGGCCCATGCGCAGGCCCTCCA...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTGGAGGGCCTGCGCATaGGCCTCCCGGTCCCCCAGG +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQWRACA*ASRSPR
Trigger: CCTGGGGGACCGGGAGGCCCATGCGCAGGCCCTCCA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTCTTGGGCCTGGGCTaGGGCTGCTGTCTGGTCCCG +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDLLGLG*GCCLVP
Trigger: CGGGACCAGACAGCAGCCTCAGCCCAGGCCCAAGAG...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCGCGAATGGCCTCCTCTaGCAGGGTCCGGCCCTCCCG +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEAANGLL*QGPALP
Trigger: CGGGAGGGCCGGACCCTGTCAGAGGAGGCCATTCGC...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACGCGAATGGCCTCCTCTaGCAGGGTCCGGCCCTCCCG +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYANGLL*QGPALP
Trigger: CGGGAGGGCCGGACCCTGTCAGAGGAGGCCATTCGC...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCCAGCTCAGCTCCTGTaGGTGTGCGGTCCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTPAQLL*VCGPGG
Trigger: GCCGCCTGGACCGCACACTCACAGGAGCTGAGCTGG...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACGGACAGCCCGGGATGTaGGGACGAGCTCCCCGCCCA +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYGQPGM*GRAPRP
Trigger: TGGGCGGGGAGCTCGTCCGCACATCCCGGGCTGTCC...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAAGCGCCTCCCGGGCCTaGTCAGCCACACACAGGGAG +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLSASRA*SATHRE
Trigger: CTCCCTGTGTGTGGCTGAGCAGGCCCGGGAGGCGCT...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCGGCCCTCCCGCTCTaGTGCTGCCAGCTTCACTGC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDPALPL*CCQLHC
Trigger: GCAGTGAAGCTGGCAGCAGCAGAGCGGGAGGGCCGG...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCCGGCCCTCCCGCTCTaGTGCTGCCAGCTTCACTGC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTPALPL*CCQLHC
Trigger: GCAGTGAAGCTGGCAGCAGCAGAGCGGGAGGGCCGG...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGCCGGCCCTCCCGCTCTaGTGCTGCCAGCTTCACTGC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPPALPL*CCQLHC
Trigger: GCAGTGAAGCTGGCAGCAGCAGAGCGGGAGGGCCGG...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGCCGCAGAGAGGCCTGTaGCTCCCGCTCGGCTTGCAC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPPQRGL*LPLGLH
Trigger: GTGCAAGCCGAGCGGGAGGCACAGGCCTCTCTGCGG...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCGCAGAGAGGCCTGTaGCTCCCGCTCGGCTTGCAC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDPQRGL*LPLGLH
Trigger: GTGCAAGCCGAGCGGGAGGCACAGGCCTCTCTGCGG...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGCGGCCCTGCAGGTCTaGCAGCTCCCGGCCCAGCCT +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSAALQV*QLPAQP
Trigger: AGGCTGGGCCGGGAGCTGGCAGACCTGCAGGGCCGC...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACAGGGCCAAGCGGCCCTaGAGGTCTGCCAGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYRAKRP*RSASSR
Trigger: CCGGGAGCTGGCAGACCTGCAGGGCCGCTTGGCCCT...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCCTGCAGTGCCAGCTCTaGCTGGGCCCCGCTCAGCCG +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEALQCQL*LGPAQP
Trigger: CGGCTGAGCGGGGCCCAGGCAGAGCTGGCACTGCAG...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTCAGCATCGCCCCGCTaGAGCTCCAGGCTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDSASPR*SSRLAS
Trigger: GCTGGCCAGCCTGGAGCTGCAGCGGGGCGATGCTGA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGTGTCGCAGCGCCTGCTaGAGCTGCTGCAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPCRSAC*SCCSWP
Trigger: GGGCCAGCTGCAGCAGCTGCAGCAGGCGCTGCGACA...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTGTCGCAGCGCCTGCTaGAGCTGCTGCAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDCRSAC*SCCSWP
Trigger: GGGCCAGCTGCAGCAGCTGCAGCAGGCGCTGCGACA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCGCTGTCGCAGCGCCTaGTGCAGCTGCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTRCRSA*CSCCSW
Trigger: CCAGCTGCAGCAGCTGCAGCAGGCGCTGCGACAGCG...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACTGGGCCAGGGCTCGCTaGAGACTGCCCAGGCGCTCC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYWARAR*RLPRRS
Trigger: GGAGCGCCTGGGCAGTCTGCAGCGAGCCCTGGCCCA...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACGCTTCCACCTGCCGCTaGGACTCCCGCAGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDASTCR*DSRRAC
Trigger: GCAAGCCCTGCGGGAGTCCCAGCGGCAGGTGGAAGC...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTCATCCCGCTCCCGCTaGGCGCTCCGCAGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTSSRSR*ALRSSC
Trigger: GCAAGAGCTGCGGAGCGCCCAGCGGGAGCGGGATGA...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGAGTCCACCCGATCCTaGAGGGCCTGCGCATGGGCC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLESTRS*RACAWA
Trigger: GGCCCATGCGCAGGCCCTCCAGGATCGGGTGGACTC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTACGGAGCGCAGAGCCATaGCCTCCCCTTCCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLRSAEP*PPLPAA
Trigger: AGCGGCAGGAAGGGGAGGCCATGGCTCTGCGCTCCG...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCGGAGCGCAGAGCCATaGCCTCCCCTTCCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDRSAEP*PPLPAA
Trigger: AGCGGCAGGAAGGGGAGGCCATGGCTCTGCGCTCCG...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGCCGTCGGAGCCCCATaGCCTGCCTCCAGAGGCGGA +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQAVGAP*PASRGG
Trigger: TCCGCCTCTGGAGGCAGGTCATGGGGCTCCGACGGC...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCCGTCGGAGCCCCATaGCCTGCCTCCAGAGGCGGA +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSAVGAP*PASRGG
Trigger: TCCGCCTCTGGAGGCAGGTCATGGGGCTCCGACGGC...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATTGTCCTGAGTGCTGCTaGGGCTGGCGCTGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYCPECC*GWRCSG
Trigger: CCCAGAGCAGCGCCAGCCTCAGCAGCACTCAGGACA...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCCCAGCTCAGCTCCTGTaGGTGTGCGGTCCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEAPAQLL*VCGPGG
Trigger: GCCGCCTGGACCGCACACTCACAGGAGCTGAGCTGG...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACGGAGCTCGTTGGCACTaGGTAGGCGCTGGGCCTCGC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYGARWH*VGAGPR
Trigger: GCGAGGCCCAGCGCCTACGCAGTGCCAACGAGCTCC...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAAGGGAGAGCTCCAGCTaGGCTCGGCCTGCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLRESSS*ARPASA
Trigger: GGCTGAAGCAGGCCGAGCGCAGCTGGAGCTCTCCCT...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCAGGGAGAGCTCCAGCTaGGCTCGGCCTGCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTRESSS*ARPASA
Trigger: GGCTGAAGCAGGCCGAGCGCAGCTGGAGCTCTCCCT...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCTCCCGCTCTGCTGCTaGCAGCTTCACTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYLPLCC*QLHCQA
Trigger: GGCCTGGCAGTGAAGCTGGCAGCAGCAGAGCGGGAG...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTACTCCCGCTCTGCTGCTaGCAGCTTCACTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLLPLCC*QLHCQA
Trigger: GGCCTGGCAGTGAAGCTGGCAGCAGCAGAGCGGGAG...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCCTCTCGCTCCTGCTaGAGCTGGCCCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLSSRSC*SWPCSW
Trigger: CCAGCTGCAGGGCCAGCTGCAGCAGGAGCGAGAGGA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAAGCTCCTCTCGCTCCTaGTGCAGCTGGCCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLSSSRS*CSWPCS
Trigger: GCTGCAGGGCCAGCTGCAGCAGGAGCGAGAGGAGCT...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCTCGGCCTCCATCCGTaGCAGCAGCTCCTCTCGCTC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTLGLHP*QQLLSL
Trigger: GAGCGAGAGGAGCTGCTGGCACGGATGGAGGCCGAG...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGCTCGGCCTCCATCCGTaGCAGCAGCTCCTCTCGCTC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPLGLHP*QQLLSL
Trigger: GAGCGAGAGGAGCTGCTGGCACGGATGGAGGCCGAG...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGCGGCCCTGCAGGTCTaGCAGCTCCCGGCCCAGCCT +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLAALQV*QLPAQP
Trigger: AGGCTGGGCCGGGAGCTGGCAGACCTGCAGGGCCGC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGCCTCAGCTCCAGGCTaGGGGCAGAGTCCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLASAPG*GQSPEA
Trigger: GGCTTCTGGACTCTGCCCGCAGCCTGGAGCTGAGGC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCCGCCTGTCTGCACTaGGCCAGGCTTCCTCGCTCT +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYAACLH*ARLPRS
Trigger: AGAGCGAGGAAGCCTGGCGCAGTGCAGACAGGCGGC...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGCTCAGCCGCCTGTCTaGACTGCGCCAGGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPAQPPV*TAPGFL
Trigger: GAGGAAGCCTGGCGCAGTGCAGACAGGCGGCTGAGC...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACGCTCAGCCGCCTGTCTaGACTGCGCCAGGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDAQPPV*TAPGFL
Trigger: GAGGAAGCCTGGCGCAGTGCAGACAGGCGGCTGAGC...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCCTGCAGTGCCAGCTCTaGCTGGGCCCCGCTCAGCCG +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVALQCQL*LGPAQP
Trigger: CGGCTGAGCGGGGCCCAGGCAGAGCTGGCACTGCAG...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCCAGGCCGAGGCGGCTaGGCTGCAGCTCGCCCTCAA +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSPGRGG*AAARPQ
Trigger: TTGAGGGCGAGCTGCAGCGCAGCCGCCTCGGCCTGG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGCCAGGCCGAGGCGGCTaGGCTGCAGCTCGCCCTCAA +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQPGRGG*AAARPQ
Trigger: TTGAGGGCGAGCTGCAGCGCAGCCGCCTCGGCCTGG...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTCAGCATCGCCCCGCTaGAGCTCCAGGCTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQSASPR*SSRLAS
Trigger: GCTGGCCAGCCTGGAGCTGCAGCGGGGCGATGCTGA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGCCTGCTGCAGCTGCTaGAGCTGGCCCTCAGCATCG +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPACCSC*SWPSAS
Trigger: CGATGCTGAGGGCCAGCTGCAGCAGCTGCAGCAGGC...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTGTCGCAGCGCCTGCTaGAGCTGCTGCAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQCRSAC*SCCSWP
Trigger: GGGCCAGCTGCAGCAGCTGCAGCAGGCGCTGCGACA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTGTCGCAGCGCCTGCTaGAGCTGCTGCAGCTGGCCC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEACRSAC*SCCSWP
Trigger: GGGCCAGCTGCAGCAGCTGCAGCAGGCGCTGCGACA...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACGGGCTCGCTGCAGACTaGCCAGGCGCTCCTGCAACA +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDGLAAD*PGAPAT
Trigger: TGTTGCAGGAGCGCCTGGGCAGTCTGCAGCGAGCCC...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGCTGAGGCTGCTGTCTaGTCCCGCAGGCGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLAEAAV*SRRRCS
Trigger: GCTACAGCGCCTGCGGGACCAGACAGCAGCCTCAGC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCGCTGCGCATCCTCTTaGGCCTGGGCTGAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYRCASS*AWAEAA
Trigger: AGCAGCCTCAGCCCAGGCCCAAGAGGATGCGCAGCG...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCGGGCATGGGCGGCAGTaGCTTCCTCCAGCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVAGHGRQ*LPPAGP
Trigger: GGGCCCAGCTGGAGGAAGCCACTGCCGCCCATGCCC...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGGGCCTCCCGCTCCTTaGCGCCCTCACTCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSGPPAP*RPHSGC
Trigger: GCAGCCTGAGTGAGGGCGCCAAGGAGCGGGAGGCCC...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGAGGCGCCTCCCGGGCTaGGGAGCTGGACACTCGGCC +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLRRLPG*GAGHSA
Trigger: GGCCGAGTGTCCAGCTCCCCAGCCCGGGAGGCGCCT...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTCATCCCGCTCCCGCTaGGCGCTCCGCAGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQSSRSR*ALRSSC
Trigger: GCAAGAGCTGCGGAGCGCCCAGCGGGAGCGGGATGA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGCCATCTGGTCCAGCGTaGCCCTGCACTCCCGCTTGC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPPSGPA*PCTPAC
Trigger: GCAAGCGGGAGTGCAGGGCCACGCTGGACCAGATGG...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACTGCAGCTGCTGCAGCTaGCCCTCAGCATCGCCCCGC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYCSCCS*PSASPR
Trigger: GCGGGGCGATGCTGAGGGCCAGCTGCAGCAGCTGCA...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCCTCTTGGGCCTGGGCTaGGGCTGCTGTCTGGTCCCG +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVALLGLG*GCCLVP
Trigger: CGGGACCAGACAGCAGCCTCAGCCCAGGCCCAAGAG...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTGCGAATGGCCTCCTCTaGCAGGGTCCGGCCCTCCCG +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPANGLL*QGPALP
Trigger: CGGGAGGGCCGGACCCTGTCAGAGGAGGCCATTCGC...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGCCGCAGCCCCAGCTCTaGGGTCTCTGCCCGCACCGC +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEPQPQL*GLCPHR
Trigger: GCGGTGCGGGCAGAGACCTCAGAGCTGGGGCTGCGG...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACTGTCCTGAGTGCTGCTaGGGCTGGCGCTGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYCPECC*GWRCSG
Trigger: CCCAGAGCAGCGCCAGCCTCAGCAGCACTCAGGACA...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCCAGCTCAGCTCCTGTaGGTGTGCGGTCCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSPAQLL*VCGPGG
Trigger: GCCGCCTGGACCGCACACTCACAGGAGCTGAGCTGG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCACCAGCTCAGCTCCTGTaGGTGTGCGGTCCAGGCGGC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSPAQLL*VCGPGG
Trigger: GCCGCCTGGACCGCACACTCACAGGAGCTGAGCTGG...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCGGAGCCCCATGACCTaGCTCCAGAGGCGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSRSPMT*LQRRSR
Trigger: CCTGCTCCGCCTCTGGAGGCAGGTCATGGGGCTCCG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCCGGAGCCCCATGACCTaGCTCCAGAGGCGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVARSPMT*LQRRSR
Trigger: CCTGCTCCGCCTCTGGAGGCAGGTCATGGGGCTCCG...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGACAGCCCGGGATGTaGGGACGAGCTCCCCGCCCA +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLGQPGM*GRAPRP
Trigger: TGGGCGGGGAGCTCGTCCGCACATCCCGGGCTGTCC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTGGACAGCCCGGGATGTaGGGACGAGCTCCCCGCCCA +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPGQPGM*GRAPRP
Trigger: TGGGCGGGGAGCTCGTCCGCACATCCCGGGCTGTCC...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTCGCTGGGCCTCGCGCTaGGCATCCTCTTGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSRWASR*ASSWAW
Trigger: CCAGGCCCAAGAGGATGCGCAGCGCGAGGCCCAGCG...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACTCCCGTCCACTCAGCTaGCGGGAGAGCTGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYSRPLS*RESWAN
Trigger: GTTGGCCCAGCTCTCCCGGCAGCTGAGTGGACGGGA...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGCTCCCGCTCTGCTGCTaGCAGCTTCACTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQLPLCC*QLHCQA
Trigger: GGCCTGGCAGTGAAGCTGGCAGCAGCAGAGCGGGAG...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCGCCCTCCCGCTCTGCTaGTGCCAGCTTCACTGCCAG +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEAALPLC*CQLHCQ
Trigger: CTGGCAGTGAAGCTGGCAGCAGCAGAGCGGGAGGGC...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCCGCAGAGAGGCCTGTaGCTCCCGCTCGGCTTGCAC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSPQRGL*LPLGLH
Trigger: GTGCAAGCCGAGCGGGAGGCACAGGCCTCTCTGCGG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTCCTCTCGCTCCTGCTaGAGCTGGCCCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEASSRSC*SWPCSW
Trigger: CCAGCTGCAGGGCCAGCTGCAGCAGGAGCGAGAGGA...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCAGCTCCTCTCGCTCCTaGTGCAGCTGGCCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEASSSRS*CSWPCS
Trigger: GCTGCAGGGCCAGCTGCAGCAGGAGCGAGAGGAGCT...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCCTCGGCCTCCATCCGTaGCAGCAGCTCCTCTCGCTC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEALGLHP*QQLLSL
Trigger: GAGCGAGAGGAGCTGCTGGCACGGATGGAGGCCGAG...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGATGCAGGCCTCCCGCTaGCGGCCCAGGTTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLMQASR*RPRFPV
Trigger: GACGGGGAACCTGGGCCGGCAGCGGGAGGCCTGCAT...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCATGCAGGCCTCCCGCTaGCGGCCCAGGTTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSMQASR*RPRFPV
Trigger: GACGGGGAACCTGGGCCGGCAGCGGGAGGCCTGCAT...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGCTCCCGGCCCAGCCTaGCATTGTCACTGTCCAGTG +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLAPGPA*HCHCPV
Trigger: CACTGGACAGTGACAATGGCAGGCTGGGCCGGGAGC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCGTCCAAGTCTGGAGGTaGCGGGGAGGCAATGAGCCC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTVQVWR*RGGNEP
Trigger: GGGCTCATTGCCTCCCCGGCACCTCCAGACTTGGAC...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGGCCGCCTGTCTGCACTaGGCCAGGCTTCCTCGCTCT +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQAACLH*ARLPRS
Trigger: AGAGCGAGGAAGCCTGGCGCAGTGCAGACAGGCGGC...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACGCTCAGCCGCCTGTCTaGACTGCGCCAGGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYAQPPV*TAPGFL
Trigger: GAGGAAGCCTGGCGCAGTGCAGACAGGCGGCTGAGC...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTCGCTCTCGGTGGCCTaGAGGCTCCTCTCCAGCACT +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDSLSVA*RLLSST
Trigger: AGTGCTGGAGAGGAGCCTGCAGGCCACCGAGAGCGA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCCCAGGCCGAGGCGGCTaGGCTGCAGCTCGCCCTCAA +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSPGRGG*AAARPQ
Trigger: TTGAGGGCGAGCTGCAGCGCAGCCGCCTCGGCCTGG...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGGCCTGCTGCAGCTGCTaGAGCTGGCCCTCAGCATCG +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQACCSC*SWPSAS
Trigger: CGATGCTGAGGGCCAGCTGCAGCAGCTGCAGCAGGC...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGCGCTGTCGCAGCGCCTaGTGCAGCTGCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQRCRSA*CSCCSW
Trigger: CCAGCTGCAGCAGCTGCAGCAGGCGCTGCGACAGCG...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTCTGCCCAGGCGCTCCTaGAACAGGCGCCGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPLPRRS*NRRRSS
Trigger: GGAGGAGCGGCGCCTGTTGCAGGAGCGCCTGGGCAG...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGCTGCCCAGGCGCTCCTaGAACAGGCGCCGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLLPRRS*NRRRSS
Trigger: GGAGGAGCGGCGCCTGTTGCAGGAGCGCCTGGGCAG...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTCCGAGGCCCAGCTCCTaGACAGCCCGGGATGTGCGG +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPPRPSS*TARDVR
Trigger: CCGCACATCCCGGGCTGTCCAGGAGCTGGGCCTCGG...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGCTCTGCACCTGCAGTTaGGCCAGGTCCTTCTCCCGG +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPLCTCS*ARSFSR
Trigger: CCGGGAGAAGGACCTGGCCCAACTGCAGGTGCAGAG...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTCAGGAGCTCGTTaGCACTGCGTAGGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLCSGAR*HCVGAG
Trigger: CCCAGCGCCTACGCAGTGCCAACGAGCTCCTGAGCA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATTGTTCCAGCTGCCTATaGCTGCGCTCCAGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYCSSCL*LRSSSR
Trigger: CCGGGAGCTGGAGCGCAGCCATAGGCAGCTGGAACA...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACAGCTGCCGGGAGAGCTaGGCCAACTGCTCCTGCAGA +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDSCRES*ANCSCR
Trigger: TCTGCAGGAGCAGTTGGCCCAGCTCTCCCGGCAGCT...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCGGGCATGGGCGGCAGTaGCTTCCTCCAGCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSGHGRQ*LPPAGP
Trigger: GGGCCCAGCTGGAGGAAGCCACTGCCGCCCATGCCC...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTTCATCCCGCTCCCGCTaGGCGCTCCGCAGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSSSRSR*ALRSSC
Trigger: GCAAGAGCTGCGGAGCGCCCAGCGGGAGCGGGATGA...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCCCATCTGGTCCAGCGTaGCCCTGCACTCCCGCTTGC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEAPSGPA*PCTPAC
Trigger: GCAAGCGGGAGTGCAGGGCCACGCTGGACCAGATGG...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCGAGTCCACCCGATCCTaGAGGGCCTGCGCATGGGCC +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVAESTRS*RACAWA
Trigger: GGCCCATGCGCAGGCCCTCCAGGATCGGGTGGACTC...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGAGTCCACCCGATCCTaGAGGGCCTGCGCATGGGCC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSESTRS*RACAWA
Trigger: GGCCCATGCGCAGGCCCTCCAGGATCGGGTGGACTC...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACGCTGCAGCTCCAGGCTaGCCAGCTCGCCCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYAAAPG*PARPSK
Trigger: CTTTGAGGGGCGAGCTGGCCAGCCTGGAGCTGCAGC...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCATGCAGCTGCTGCAGCTaGCCCTCAGCATCGCCCCGC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSCSCCS*PSASPR
Trigger: GCGGGGCGATGCTGAGGGCCAGCTGCAGCAGCTGCA...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCGGAGCGCAGAGCCATaGCCTCCCCTTCCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSRSAEP*PPLPAA
Trigger: AGCGGCAGGAAGGGGAGGCCATGGCTCTGCGCTCCG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCGCTCTGAGCTGCTaGGCTGCACACCACTCTCAG +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLCALSC*AAHHSQ
Trigger: CTGAGAGTGGTGTGCAGCTCAGCAGCTCAGAGCGCA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGCGCTTGTGCAGGGCTaGGTGGATCAGCGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLALVQG*VDQREC
Trigger: ACACTCACGCTGATCCACTCAGCCCTGCACAAGCGC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCCTCTTGGGCCTGGGCTaGGGCTGCTGTCTGGTCCCG +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSLLGLG*GCCLVP
Trigger: CGGGACCAGACAGCAGCCTCAGCCCAGGCCCAAGAG...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCTCCTTAGTCAGCCCTaGGCGCTTCACCTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTLLSQP*ALHLQL
Trigger: CAGCTGGAGGTGAAGCGCTCAGGGCTGACTAAGGAG...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTGGCCAGTGCCCCACTaGGCCGCTCCACTGTCAGCT +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQWPVPH*AAPLSA
Trigger: AGCTGACAGTGGAGCGGCTCAGTGGGGCACTGGCCA...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTGTCCTGAGTGCTGCTaGGGCTGGCGCTGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQCPECC*GWRCSG
Trigger: CCCAGAGCAGCGCCAGCCTCAGCAGCACTCAGGACA...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTCGGAGCCCCATGACCTaGCTCCAGAGGCGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSRSPMT*LQRRSR
Trigger: CCTGCTCCGCCTCTGGAGGCAGGTCATGGGGCTCCG...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTCCAGAGCTGCCTCTaGCTTGCTCTCAGCCCGATG +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDLQSCL*LALSPM
Trigger: CATCGGGCTGAGAGCAAGGCAGAGGCAGCTCTGGAG...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGAGCTCGTTGGCACTaGGTAGGCGCTGGGCCTCGC +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLGARWH*VGAGPR
Trigger: GCGAGGCCCAGCGCCTACGCAGTGCCAACGAGCTCC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCGGAGCTCGTTGGCACTaGGTAGGCGCTGGGCCTCGC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSGARWH*VGAGPR
Trigger: GCGAGGCCCAGCGCCTACGCAGTGCCAACGAGCTCC...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTCCAGCTGTTCCAGCTaGCTATGGCTGCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDSSCSS*LWLRSS
Trigger: GCTGGAGCGCAGCCATAGGCAGCTGGAACAGCTGGA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGAGGGAGAGCTCCAGCTaGGCTCGGCCTGCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQRESSS*ARPASA
Trigger: GGCTGAAGCAGGCCGAGCGCAGCTGGAGCTCTCCCT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTAGCGCCTCCCGGGCCTaGTCAGCCACACACAGGGAG +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPSASRA*SATHRE
Trigger: CTCCCTGTGTGTGGCTGAGCAGGCCCGGGAGGCGCT...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAGCGCCTCCCGGGCCTaGTCAGCCACACACAGGGAG +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSSASRA*SATHRE
Trigger: CTCCCTGTGTGTGGCTGAGCAGGCCCGGGAGGCGCT...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGAGCGCCTCCCGGGCCTaGTCAGCCACACACAGGGAG +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLSASRA*SATHRE
Trigger: CTCCCTGTGTGTGGCTGAGCAGGCCCGGGAGGCGCT...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGGGCCAACTGCTCCTaGAGATGGCTGCGTTCGCTG +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLWANCS*RWLRSL
Trigger: CAGCGAACGCAGCCATCTGCAGGAGCAGTTGGCCCA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGAGAGCTGGGCCAACTaGTCCTGCAGATGGCTGCGT +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLESWAN*SCRWLR
Trigger: ACGCAGCCATCTGCAGGAGCAGTTGGCCCAGCTCTC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCTCCCGCTCTGCTGCTaGCAGCTTCACTGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSLPLCC*QLHCQA
Trigger: GGCCTGGCAGTGAAGCTGGCAGCAGCAGAGCGGGAG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCGCCCTCCCGCTCTGCTaGTGCCAGCTTCACTGCCAG +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVAALPLC*CQLHCQ
Trigger: CTGGCAGTGAAGCTGGCAGCAGCAGAGCGGGAGGGC...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTCCGGCCCTCCCGCTCTaGTGCTGCCAGCTTCACTGC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPPALPL*CCQLHC
Trigger: GCAGTGAAGCTGGCAGCAGCAGAGCGGGAGGGCCGG...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGCCTCCCGCTCGGCTTaGACTAGCTTCTGGGTCATC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLASRSA*TSFWVI
Trigger: GATGACCCAGAAGCTAGTGCAAGCCGAGCGGGAGGC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCATCCTCTCGCTCCTGCTaGAGCTGGCCCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSSSRSC*SWPCSW
Trigger: CCAGCTGCAGGGCCAGCTGCAGCAGGAGCGAGAGGA...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCTCGGCCTCCATCCGTaGCAGCAGCTCCTCTCGCTC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSLGLHP*QQLLSL
Trigger: GAGCGAGAGGAGCTGCTGGCACGGATGGAGGCCGAG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCGCGGCAATCTCCTTaGTCAGCTCCTCCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYARQSP*SAPPSR
Trigger: CCGAGAAGGAGGAGCTGAGCAAGGAGATTGCCGCGC...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACGCGCGGCAATCTCCTTaGTCAGCTCCTCCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDARQSP*SAPPSR
Trigger: CCGAGAAGGAGGAGCTGAGCAAGGAGATTGCCGCGC...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTTTTCGCTCTCTaGCAGCAGCAGGCCCTCGTC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDLLFAL*QQQALV
Trigger: GACGAGGGCCTGCTGCTGGCAGAGAGCGAAAAGCAG...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCATGCAGGCCTCCCGCTaGCGGCCCAGGTTCCCCGTC +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGMQASR*RPRFPV
Trigger: GACGGGGAACCTGGGCCGGCAGCGGGAGGCCTGCAT...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCGGCCCTGCAGGTCTaGCAGCTCCCGGCCCAGCCT +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLAALQV*QLPAQP
Trigger: AGGCTGGGCCGGGAGCTGGCAGACCTGCAGGGCCGC...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGTCGGCCTCTTGCTCCTaGAGCTTCCTCTGGGAACCC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPSASCS*SFLWEP
Trigger: GGGTTCCCAGAGGAAGCTGCAGGAGCAAGAGGCCGA...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCGGCCTCTTGCTCCTaGAGCTTCCTCTGGGAACCC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLSASCS*SFLWEP
Trigger: GGGTTCCCAGAGGAAGCTGCAGGAGCAAGAGGCCGA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGCCTCAGCTCCAGGCTaGGGGCAGAGTCCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSASAPG*GQSPEA
Trigger: GGCTTCTGGACTCTGCCCGCAGCCTGGAGCTGAGGC...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTCGCTCTCAGCGACTaGCTTCTGCAGCTGCTTGGC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDLALSD*LLQLLG
Trigger: GCCAAGCAGCTGCAGAAGGCAGTCGCTGAGAGCGAG...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGCCGCCTGTCTGCACTaGGCCAGGCTTCCTCGCTCT +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSAACLH*ARLPRS
Trigger: AGAGCGAGGAAGCCTGGCGCAGTGCAGACAGGCGGC...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCACTCTCTTCCTGCAGTaGCAGCTCTGCCTGGGCCCC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEATLFLQ*QLCLGP
Trigger: GGGGCCCAGGCAGAGCTGGCACTGCAGGAAGAGAGT...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGACTCTCTTCCTGCAGTaGCAGCTCTGCCTGGGCCCC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQTLFLQ*QLCLGP
Trigger: GGGGCCCAGGCAGAGCTGGCACTGCAGGAAGAGAGT...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTCGCTCTCGGTGGCCTaGAGGCTCCTCTCCAGCACT +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQSLSVA*RLLSST
Trigger: AGTGCTGGAGAGGAGCCTGCAGGCCACCGAGAGCGA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTCAGCATCGCCCCGCTaGAGCTCCAGGCTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSSASPR*SSRLAS
Trigger: GCTGGCCAGCCTGGAGCTGCAGCGGGGCGATGCTGA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGAGCGCCTGCTGCAGCTaGTGCAGCTGGCCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQSACCS*CSWPSA
Trigger: TGCTGAGGGCCAGCTGCAGCAGCTGCAGCAGGCGCT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCTGCCCAGGCGCTCCTaGAACAGGCGCCGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGLPRRS*NRRRSS
Trigger: GGAGGAGCGGCGCCTGTTGCAGGAGCGCCTGGGCAG...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGCGGATGCCGAGCTCCTaGGAAGCTCCTGGTGTAGCT +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPRMPSS*EAPGVA
Trigger: AGCTACACCAGGAGCTTCGCAGGAGCTCGGCATCCG...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCGGATGCCGAGCTCCTaGGAAGCTCCTGGTGTAGCT +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDRMPSS*EAPGVA
Trigger: AGCTACACCAGGAGCTTCGCAGGAGCTCGGCATCCG...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTACGGATGCCGAGCTCCTaGGAAGCTCCTGGTGTAGCT +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLRMPSS*EAPGVA
Trigger: AGCTACACCAGGAGCTTCGCAGGAGCTCGGCATCCG...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCCTCGCTCAGAGCCTaGTTGGCCAAGTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLSSLRA*LAKLAW
Trigger: CCAGGCCAACTTGGCCAACCAGGCTCTGAGCGAGGA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACCTCTGCACCTGCAGTTaGGCCAGGTCCTTCTCCCGG +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYLCTCS*ARSFSR
Trigger: CCGGGAGAAGGACCTGGCCCAACTGCAGGTGCAGAG...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGCTCTGCACCTGCAGTTaGGCCAGGTCCTTCTCCCGG +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQLCTCS*ARSFSR
Trigger: CCGGGAGAAGGACCTGGCCCAACTGCAGGTGCAGAG...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACATGCCGCGGTGGAGTTaGAGTCCGCTGGCCAGAGAA +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDMPRWS*SPLARE
Trigger: TTCTCTGGCCAGCGGACTCCAACTCCACCGCGGCAT...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGCTGAGGCTGCTGTCTaGTCCCGCAGGCGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQAEAAV*SRRRCS
Trigger: GCTACAGCGCCTGCGGGACCAGACAGCAGCCTCAGC...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCGCATCCTCTTGGGCCTaGGCTGAGGCTGCTGTCTGG +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEAASSWA*AEAAVW
Trigger: CCAGACAGCAGCCTCAGCCCAGGCCCAAGAGGATGC...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCACGCTGCGCATCCTCTTaGGCCTGGGCTGAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSRCASS*AWAEAA
Trigger: AGCAGCCTCAGCCCAGGCCCAAGAGGATGCGCAGCG...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACGGCCTGCTTCAGCCTTaGTTAGCGCCTCGGCCACCT +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYGLLQP*LAPRPP
Trigger: AGGTGGCCGAGGCGCTAACCAAGGCTGAAGCAGGCC...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTGCTTCCACCTGCCGCTaGGACTCCCGCAGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPASTCR*DSRRAC
Trigger: GCAAGCCCTGCGGGAGTCCCAGCGGCAGGTGGAAGC...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGCTTCCACCTGCCGCTaGGACTCCCGCAGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSASTCR*DSRRAC
Trigger: GCAAGCCCTGCGGGAGTCCCAGCGGCAGGTGGAAGC...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTGTTCCTGCCGGCTCTaGGCATCTCGCTTCTGCCGT +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDCSCRL*ASRFCR
Trigger: ACGGCAGAAGCGAGATGCCCAGAGCCGGCAGGAACA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCGGGCATGGGCGGCAGTaGCTTCCTCCAGCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGGHGRQ*LPPAGP
Trigger: GGGCCCAGCTGGAGGAAGCCACTGCCGCCCATGCCC...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTCATCCCGCTCCCGCTaGGCGCTCCGCAGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSSSRSR*ALRSSC
Trigger: GCAAGAGCTGCGGAGCGCCCAGCGGGAGCGGGATGA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATAGGCTGGCGCTGCTCTaGGTCAGGGCATCTGTCAAG +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYRLALL*VRASVK
Trigger: CTTGACAGATGCCCTGACCCAGAGCAGCGCCAGCCT...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCAGGCTGGCGCTGCTCTaGGTCAGGGCATCTGTCAAG +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTRLALL*VRASVK
Trigger: CTTGACAGATGCCCTGACCCAGAGCAGCGCCAGCCT...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATTTCTCAGCTTCCAGCTaGGCCAGGGCTCGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYFSASS*ARARCR
Trigger: TCTGCAGCGAGCCCTGGCCCAGCTGGAAGCTGAGAA...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTACGCAGGGTGTCCTCATaGCTTCGAAGCTTCTCCCGC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLRRVSS*LRSFSR
Trigger: GCGGGAGAAGCTTCGAAGCCATGAGGACACCCTGCG...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGCGCAGGGTGTCCTCATaGCTTCGAAGCTTCTCCCGC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPRRVSS*LRSFSR
Trigger: GCGGGAGAAGCTTCGAAGCCATGAGGACACCCTGCG...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCGCAGACAAGCAGGCTaGCTCCCTGGAAGTCCTGGA +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYRRQAG*LPGSPG
Trigger: TCCAGGACTTCCAGGGAGCCAGCCTGCTTGTCTGCG...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR TCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGGCGCTTGTGCAGGGCTaGGTGGATCAGCGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQALVQG*VDQREC
Trigger: ACACTCACGCTGATCCACTCAGCCCTGCACAAGCGC...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGCGTCCACGCATGTCCTaGACCTGTAGCTGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQRPRMS*TCSWRL
Trigger: CAAGCGCCAGCTACAGGTTCAGGACATGCGTGGACG...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGCTCTTGGGCCTGGGCTaGGGCTGCTGTCTGGTCCCG +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSELLGLG*GCCLVP
Trigger: CGGGACCAGACAGCAGCCTCAGCCCAGGCCCAAGAG...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCCTCCTTAGTCAGCCCTaGGCGCTTCACCTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEALLSQP*ALHLQL
Trigger: CAGCTGGAGGTGAAGCGCTCAGGGCTGACTAAGGAG...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGCAGCTGCTTGGCCCTTaGGGCTGCATGGTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQQLLGP*GCMVSL
Trigger: GAGAGAGACCATGCAGCCTCAAGGGCCAAGCAGCTG...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACCAGCTGCTTGGCCCTTaGGGCTGCATGGTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYQLLGP*GCMVSL
Trigger: GAGAGAGACCATGCAGCCTCAAGGGCCAAGCAGCTG...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTGTCCTGAGTGCTGCTaGGGCTGGCGCTGCTCTGGG +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSCPECC*GWRCSG
Trigger: CCCAGAGCAGCGCCAGCCTCAGCAGCACTCAGGACA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGCGGAGCCCCATGACCTaGCTCCAGAGGCGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSERSPMT*LQRRSR
Trigger: CCTGCTCCGCCTCTGGAGGCAGGTCATGGGGCTCCG...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTTGCTCTCAGCCCGATaGAGGCTGGCACTCAGTCCG +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQLLSAR*RLALSP
Trigger: CGGACTGAGTGCCAGCCTGCATCGGGCTGAGAGCAA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACTTGCTCTCAGCCCGATaGAGGCTGGCACTCAGTCCG +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYLLSAR*RLALSP
Trigger: CGGACTGAGTGCCAGCCTGCATCGGGCTGAGAGCAA...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGAGCTGCCTCTGCCTTaGTCTCAGCCCGATGCAGGC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSELPLP*SQPDAG
Trigger: GCCTGCATCGGGCTGAGAGCAAGGCAGAGGCAGCTC...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGAGCTGCCTCTGCCTTaGTCTCAGCCCGATGCAGGC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSELPLP*SQPDAG
Trigger: GCCTGCATCGGGCTGAGAGCAAGGCAGAGGCAGCTC...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACAGCTTGGCCTGTAGCTaGTCCTCTAGTTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDSLACS*SSSWAC
Trigger: GCAGGCCCAACTAGAGGAGCAGCTACAGGCCAAGCT...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCGCTGGGCCTCGCGCTaGGCATCCTCTTGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVRWASR*ASSWAW
Trigger: CCAGGCCCAAGAGGATGCGCAGCGCGAGGCCCAGCG...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCGCTGGGCCTCGCGCTaGGCATCCTCTTGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLRWASR*ASSWAW
Trigger: CCAGGCCCAAGAGGATGCGCAGCGCGAGGCCCAGCG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCGGAGCTCGTTGGCACTaGGTAGGCGCTGGGCCTCGC +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGGARWH*VGAGPR
Trigger: GCGAGGCCCAGCGCCTACGCAGTGCCAACGAGCTCC...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTCCAGCTGTTCCAGCTaGCTATGGCTGCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEASSCSS*LWLRSS
Trigger: GCTGGAGCGCAGCCATAGGCAGCTGGAACAGCTGGA...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTAGGGAGAGCTCCAGCTaGGCTCGGCCTGCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPRESSS*ARPASA
Trigger: GGCTGAAGCAGGCCGAGCGCAGCTGGAGCTCTCCCT...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTGGCATGTTCTGCCTaGTGCTGGCGGCCCAGGAGT +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSVACSA*CWRPRS
Trigger: ACTCCTGGGCCGCCAGCAGCAGGCAGAACATGCCAC...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACTGGGCCAACTGCTCCTaGAGATGGCTGCGTTCGCTG +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYWANCS*RWLRSL
Trigger: CAGCGAACGCAGCCATCTGCAGGAGCAGTTGGCCCA...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCGAGAGCTGGGCCAACTaGTCCTGCAGATGGCTGCGT +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEAESWAN*SCRWLR
Trigger: ACGCAGCCATCTGCAGGAGCAGTTGGCCCAGCTCTC...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTTCCCGTCCACTCAGCTaGCGGGAGAGCTGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPSRPLS*RESWAN
Trigger: GTTGGCCCAGCTCTCCCGGCAGCTGAGTGGACGGGA...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCGCCTCCCGCTCGGCTTaGACTAGCTTCTGGGTCATC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEAASRSA*TSFWVI
Trigger: GATGACCCAGAAGCTAGTGCAAGCCGAGCGGGAGGC...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTAGCTCCTCTCGCTCCTaGTGCAGCTGGCCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPSSSRS*CSWPCS
Trigger: GCTGCAGGGCCAGCTGCAGCAGGAGCGAGAGGAGCT...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACCTGCTTTTCGCTCTCTaGCAGCAGCAGGCCCTCGTC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYLLFAL*QQQALV
Trigger: GACGAGGGCCTGCTGCTGGCAGAGAGCGAAAAGCAG...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTCCCGGCCCAGCCTaGCATTGTCACTGTCCAGTG +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSAPGPA*HCHCPV
Trigger: CACTGGACAGTGACAATGGCAGGCTGGGCCGGGAGC...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCGCTCCCGGCCCAGCCTaGCATTGTCACTGTCCAGTG +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVAAPGPA*HCHCPV
Trigger: CACTGGACAGTGACAATGGCAGGCTGGGCCGGGAGC...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGTCAGGGCTTCCAGGCTaGTCTCGCCTTTCAGCAACC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPSGLPG*SRLSAT
Trigger: GGTTGCTGAAAGGCGAGAGCAGCCTGGAAGCCCTGA...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGCCTCAGCTCCAGGCTaGGGGCAGAGTCCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSASAPG*GQSPEA
Trigger: GGCTTCTGGACTCTGCCCGCAGCCTGGAGCTGAGGC...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTCCAAGTCTGGAGGTaGCGGGGAGGCAATGAGCCC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSVQVWR*RGGNEP
Trigger: GGGCTCATTGCCTCCCCGGCACCTCCAGACTTGGAC...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGCTCAGCCGCCTGTCTaGACTGCGCCAGGCTTCCTC +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSAQPPV*TAPGFL
Trigger: GAGGAAGCCTGGCGCAGTGCAGACAGGCGGCTGAGC...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGACTCTCTTCCTGCAGTaGCAGCTCTGCCTGGGCCCC +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQTLFLQ*QLCLGP
Trigger: GGGGCCCAGGCAGAGCTGGCACTGCAGGAAGAGAGT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCCCTGCACTCCCGCTTaGTACGTCGCACACTCTCTT +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTPCTPA*YVAHSL
Trigger: AAGAGAGTGTGCGACGTAGCAAGCGGGAGTGCAGGG...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCCCTGCACTCCCGCTTaGTACGTCGCACACTCTCTT +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYPCTPA*YVAHSL
Trigger: AAGAGAGTGTGCGACGTAGCAAGCGGGAGTGCAGGG...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTTCGCTCTCGGTGGCCTaGAGGCTCCTCTCCAGCACT +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSSLSVA*RLLSST
Trigger: AGTGCTGGAGAGGAGCCTGCAGGCCACCGAGAGCGA...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGTCAGCATCGCCCCGCTaGAGCTCCAGGCTGGCCAGC +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSESASPR*SSRLAS
Trigger: GCTGGCCAGCCTGGAGCTGCAGCGGGGCGATGCTGA...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGCCTGCTGCAGCTGCTaGAGCTGGCCCTCAGCATCG +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLACCSC*SWPSAS
Trigger: CGATGCTGAGGGCCAGCTGCAGCAGCTGCAGCAGGC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGCCTGCTGCAGCTGCTaGAGCTGGCCCTCAGCATCG +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSACCSC*SWPSAS
Trigger: CGATGCTGAGGGCCAGCTGCAGCAGCTGCAGCAGGC...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCGCTGTCGCAGCGCCTaGTGCAGCTGCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGRCRSA*CSCCSW
Trigger: CCAGCTGCAGCAGCTGCAGCAGGCGCTGCGACAGCG...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTGCCCAGGCGCTCCTaGAACAGGCGCCGCTCCTCC +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVLPRRS*NRRRSS
Trigger: GGAGGAGCGGCGCCTGTTGCAGGAGCGCCTGGGCAG...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTGGGCTCGCTGCAGACTaGCCAGGCGCTCCTGCAACA +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPGLAAD*PGAPAT
Trigger: TGTTGCAGGAGCGCCTGGGCAGTCTGCAGCGAGCCC...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGTGGGCCAGGGCTCGCTaGAGACTGCCCAGGCGCTCC +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLWARAR*RLPRRS
Trigger: GGAGCGCCTGGGCAGTCTGCAGCGAGCCCTGGCCCA...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTCTGTACCTGGGCACTaGGCAGGCGTTCAACCTCCT +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTSVPGH*AGVQPP
Trigger: AGGAGGTTGAACGCCTGCGCAGTGCCCAGGTACAGA...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGTCTGTACCTGGGCACTaGGCAGGCGTTCAACCTCCT +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPSVPGH*AGVQPP
Trigger: AGGAGGTTGAACGCCTGCGCAGTGCCCAGGTACAGA...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTCACCTGGGCCAGGCTaGCACTTCTCTGCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDSPGPG*HFSAVP
Trigger: AGGAACAGCAGAGAAGTGCCAGCCTGGCCCAGGTGA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTTGGCCAAGTTGGCCTaGTCCAGCTGCTCTCTCAGC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDLAKLA*SSCSLS
Trigger: GCTGAGAGAGCAGCTGGACCAGGCCAACTTGGCCAA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACTCCTCGCTCAGAGCCTaGTTGGCCAAGTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYSSLRA*LAKLAW
Trigger: CCAGGCCAACTTGGCCAACCAGGCTCTGAGCGAGGA...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTCCTCGCTCAGAGCCTaGTTGGCCAAGTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQSSLRA*LAKLAW
Trigger: CCAGGCCAACTTGGCCAACCAGGCTCTGAGCGAGGA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCCGAGGCCCAGCTCCTaGACAGCCCGGGATGTGCGG +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVPRPSS*TARDVR
Trigger: CCGCACATCCCGGGCTGTCCAGGAGCTGGGCCTCGG...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCCGAGGCCCAGCTCCTaGACAGCCCGGGATGTGCGG +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLPRPSS*TARDVR
Trigger: CCGCACATCCCGGGCTGTCCAGGAGCTGGGCCTCGG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGATGCCGCGGTGGAGTTaGAGTCCGCTGGCCAGAGAA +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQMPRWS*SPLARE
Trigger: TTCTCTGGCCAGCGGACTCCAACTCCACCGCGGCAT...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTGCTGAGGCTGCTGTCTaGTCCCGCAGGCGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPAEAAV*SRRRCS
Trigger: GCTACAGCGCCTGCGGGACCAGACAGCAGCCTCAGC...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCATCCTCTTGGGCCTaGGCTGAGGCTGCTGTCTGG +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSASSWA*AEAAVW
Trigger: CCAGACAGCAGCCTCAGCCCAGGCCCAAGAGGATGC...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTGCTCAGGAGCTCGTTaGCACTGCGTAGGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQCSGAR*HCVGAG
Trigger: CCCAGCGCCTACGCAGTGCCAACGAGCTCCTGAGCA...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCAGCTTCTCCAGCTCCTaGCGCAGCTCCTTAGCTTGC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTSFSSS*RSSLAC
Trigger: GCAAGCTAAGGAGCTGCGCCAGGAGCTGGAGAAGCT...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTTGTTCCAGCTGCCTATaGCTGCGCTCCAGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSCSSCL*LRSSSR
Trigger: CCGGGAGCTGGAGCGCAGCCATAGGCAGCTGGAACA...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGGCCTGCTTCAGCCTTaGTTAGCGCCTCGGCCACCT +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQGLLQP*LAPRPP
Trigger: AGGTGGCCGAGGCGCTAACCAAGGCTGAAGCAGGCC...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCGCTTCCACCTGCCGCTaGGACTCCCGCAGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGASTCR*DSRRAC
Trigger: GCAAGCCCTGCGGGAGTCCCAGCGGCAGGTGGAAGC...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCCATCTCCAGAGAGATaGCAGCCAGACTGTGCCGAG +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYPSPER*QPDCAE
Trigger: CTCGGCACAGTCTGGCTGCCATCTCTCTGGAGATGG...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTGTTCCTGCCGGCTCTaGGCATCTCGCTTCTGCCGT +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEACSCRL*ASRFCR
Trigger: ACGGCAGAAGCGAGATGCCCAGAGCCGGCAGGAACA...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACGCTCTCCAGCCTCCTTaGCTACAGACACTCGAGCCT +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDALQPP*LQTLEP
Trigger: AGGCTCGAGTGTCTGTAGCCAAGGAGGCTGGAGAGC...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCGCCCTTGAGGCTGCATaGTCTCTCTCTGCCTCCATC +
Preference number: 4 (lower is better)
Translates to: TRPWAGYATKGVSPAQGTALEAA*SLSASI
Trigger: GATGGAGGCAGAGAGAGACCATGCAGCCTCAAGGGC...GGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATTGCTGACTTTCTCCTaGCTGGCTCGGAGCTCGCTC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLLLTFS*LARSSL
Trigger: GAGCGAGCTCCGAGCCAGCCAGGAGAAAGTCAGCAA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTTGCTGACTTTCTCCTaGCTGGCTCGGAGCTCGCTC +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDLLTFS*LARSSL
Trigger: GAGCGAGCTCCGAGCCAGCCAGGAGAAAGTCAGCAA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGTGCAGCTGCTGCAGCTaGCCCTCAGCATCGCCCCGC +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSECSCCS*PSASPR
Trigger: GCGGGGCGATGCTGAGGGCCAGCTGCAGCAGCTGCA...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCGGAGCGCAGAGCCATaGCCTCCCCTTCCTGCCGCT +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGRSAEP*PPLPAA
Trigger: AGCGGCAGGAAGGGGAGGCCATGGCTCTGCGCTCCG...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCAGAGAGGGTCCTGTTaGCCTGGTCCTTCTCTGAGT +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYQRGSC*PGPSLS
Trigger: ACTCAGAGAAGGACCAGGTCAACAGGACCCTCTCTG...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTGCGCTCTGAGCTGCTaGGCTGCACACCACTCTCAG +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVACALSC*AAHHSQ
Trigger: CTGAGAGTGGTGTGCAGCTCAGCAGCTCAGAGCGCA...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCCGTCCACGCATGTCCTaGACCTGTAGCTGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVARPRMS*TCSWRL
Trigger: CAAGCGCCAGCTACAGGTTCAGGACATGCGTGGACG...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCAGCTGCTTGGCCCTTaGGGCTGCATGGTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSQLLGP*GCMVSL
Trigger: GAGAGAGACCATGCAGCCTCAAGGGCCAAGCAGCTG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGGCCTTCATCTTGCTaGCTTTCTCCTGGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLWPSSC*LSPGWL
Trigger: GAGCCAGCCAGGAGAAAGTCAGCAAGATGAAGGCCA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGTGGCCAGTGCCCCACTaGGCCGCTCCACTGTCAGCT +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEWPVPH*AAPLSA
Trigger: AGCTGACAGTGGAGCGGCTCAGTGGGGCACTGGCCA...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTGCAGATTCTTGTCCTaGGTGCTGCTGAGGCTGGCG +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQCRFLS*VLLRLA
Trigger: CGCCAGCCTCAGCAGCACTCAGGACAAGAATCTGCA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACAGCTGGTTTTCCTCCTaGAGCGACAGCAGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYSWFSS*SDSSEA
Trigger: GGCCTCACTGCTGTCGCTGCAGGAGGAAAACCAGCT...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTTGCTCTCAGCCCGATaGAGGCTGGCACTCAGTCCG +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQLLSAR*RLALSP
Trigger: CGGACTGAGTGCCAGCCTGCATCGGGCTGAGAGCAA...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCACTCCAGAGCTGCCTCTaGCTTGCTCTCAGCCCGATG +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSLQSCL*LALSPM
Trigger: CATCGGGCTGAGAGCAAGGCAGAGGCAGCTCTGGAG...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGCCTGCAGCAGCTTTTaGTTCTCCAGAGCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPACSSF*FSRAAS
Trigger: AGAGGCAGCTCTGGAGAAGCAAAAGCTGCTGCAGGC...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACAGCTTGGCCTGTAGCTaGTCCTCTAGTTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYSLACS*SSSWAC
Trigger: GCAGGCCCAACTAGAGGAGCAGCTACAGGCCAAGCT...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCATGCTGCTGGGTCACCTaGAGGCTGTGGGTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSCCWVT*RLWVRF
Trigger: GAACCTGACCCACAGCCTGCAGGTGACCCAGCAGCA...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGTGGCATGTTCTGCCTaGTGCTGGCGGCCCAGGAGT +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSVACSA*CWRPRS
Trigger: ACTCCTGGGCCGCCAGCAGCAGGCAGAACATGCCAC...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGTGGCATGTTCTGCCTaGTGCTGGCGGCCCAGGAGT +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLVACSA*CWRPRS
Trigger: ACTCCTGGGCCGCCAGCAGCAGGCAGAACATGCCAC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTGGGCCAACTGCTCCTaGAGATGGCTGCGTTCGCTG +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQWANCS*RWLRSL
Trigger: CAGCGAACGCAGCCATCTGCAGGAGCAGTTGGCCCA...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCGCCCTCCCGCTCTGCTaGTGCCAGCTTCACTGCCAG +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGALPLC*CQLHCQ
Trigger: CTGGCAGTGAAGCTGGCAGCAGCAGAGCGGGAGGGC...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTCTGTGGATGTTACCTaGTGCCGTAGGCCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEASVDVT*CRRPAS
Trigger: GCTGGCAGGCCTACGGCAGCAGGTAACATCCACAGA...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCAGCCTCCTTCTCATaGTGCAGTCTCTGGAGATCC +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYAASFS*CSLWRS
Trigger: GGATCTCCAGAGACTGCAGCATGAGAAGGAGGCTGC...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGCGCGGCAATCTCCTTaGTCAGCTCCTCCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQARQSP*SAPPSR
Trigger: CCGAGAAGGAGGAGCTGAGCAAGGAGATTGCCGCGC...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCGCGCGGCAATCTCCTTaGTCAGCTCCTCCTTCTCGG +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVAARQSP*SAPPSR
Trigger: CCGAGAAGGAGGAGCTGAGCAAGGAGATTGCCGCGC...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTAGGGCCAAGCGGCCCTaGAGGTCTGCCAGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSRAKRP*RSASSR
Trigger: CCGGGAGCTGGCAGACCTGCAGGGCCGCTTGGCCCT...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTCAGGGCTTCCAGGCTaGTCTCGCCTTTCAGCAACC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQSGLPG*SRLSAT
Trigger: GGTTGCTGAAAGGCGAGAGCAGCCTGGAAGCCCTGA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACTCAGGGCTTCCAGGCTaGTCTCGCCTTTCAGCAACC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYSGLPG*SRLSAT
Trigger: GGTTGCTGAAAGGCGAGAGCAGCCTGGAAGCCCTGA...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTCGGCCTCTTGCTCCTaGAGCTTCCTCTGGGAACCC +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQSASCS*SFLWEP
Trigger: GGGTTCCCAGAGGAAGCTGCAGGAGCAAGAGGCCGA...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGTCCAAGTCTGGAGGTaGCGGGGAGGCAATGAGCCC +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLVQVWR*RGGNEP
Trigger: GGGCTCATTGCCTCCCCGGCACCTCCAGACTTGGAC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCACTGCCTTCTGCAGCTaGTTGGCCCTTGAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEATAFCS*LALEAA
Trigger: TGCAGCCTCAAGGGCCAAGCAGCTGCAGAAGGCAGT...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGGCCGCCTGTCTGCACTaGGCCAGGCTTCCTCGCTCT +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEAACLH*ARLPRS
Trigger: AGAGCGAGGAAGCCTGGCGCAGTGCAGACAGGCGGC...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCTGCAGTGCCAGCTCTaGCTGGGCCCCGCTCAGCCG +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSLQCQL*LGPAQP
Trigger: CGGCTGAGCGGGGCCCAGGCAGAGCTGGCACTGCAG...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATCGCGCTTCAGACAATaGCTGTCTGGCTGCATCCAG +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLSRFRQ*LSGCIQ
Trigger: CTGGATGCAGCCAGACAGGCATTGTCTGAAGCGCGA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGGGGCTCGCTGCAGACTaGCCAGGCGCTCCTGCAACA +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEGLAAD*PGAPAT
Trigger: TGTTGCAGGAGCGCCTGGGCAGTCTGCAGCGAGCCC...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATTCCAAATGTTGGATCTaGTGTTGGGCCTCGGCCAGG +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYSKCWI*CWASAR
Trigger: CCTGGCCGAGGCCCAACAGCAGATCCAACATTTGGA...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTCTGTACCTGGGCACTaGGCAGGCGTTCAACCTCCT +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEASVPGH*AGVQPP
Trigger: AGGAGGTTGAACGCCTGCGCAGTGCCCAGGTACAGA...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATTCCTGGACCCGGTTCTaGACACTCAGGCTCTTCTCT +
Preference number: 4 (lower is better)
Translates to: ATPAPSHSTLMTRPWAGYSWTRF*TLRLFS
Trigger: AGAGAAGAGCCTGAGTGTGCAGAACCGGGTCCAGGA...ATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCCCCTCTGGGCTCCTGTaGCTCCAGCTCCCCAGTTTC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSPSGLL*LQLPSF
Trigger: GAAACTGGGGAGCTGGAGGCACAGGAGCCCAGAGGG...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR CCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTATGCCGCGGTGGAGTTaGAGTCCGCTGGCCAGAGAA +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSMPRWS*SPLARE
Trigger: TTCTCTGGCCAGCGGACTCCAACTCCACCGCGGCAT...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGATGCCGCGGTGGAGTTaGAGTCCGCTGGCCAGAGAA +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQMPRWS*SPLARE
Trigger: TTCTCTGGCCAGCGGACTCCAACTCCACCGCGGCAT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGTTGTGCAGGGCTGAGTaGATCAGCGTGAGTGTGGAG +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPLCRAE*ISVSVE
Trigger: CTCCACACTCACGCTGATCCACTCAGCCCTGCACAA...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCCAGCAGTTCTTGGCTaGCTTCATAGCGTCCACGCA +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDPAVLG*LHSVHA
Trigger: TGCGTGGACGCTATGAAGCCAGCCAAGAACTGCTGG...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTACCAGCAGTTCTTGGCTaGCTTCATAGCGTCCACGCA +
Preference number: 4 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLPAVLG*LHSVHA
Trigger: TGCGTGGACGCTATGAAGCCAGCCAAGAACTGCTGG...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCGCTGAGGCTGCTGTCTaGTCCCGCAGGCGCTGTAGC +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGAEAAV*SRRRCS
Trigger: GCTACAGCGCCTGCGGGACCAGACAGCAGCCTCAGC...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTGCTCAGGAGCTCGTTaGCACTGCGTAGGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSCSGAR*HCVGAG
Trigger: CCCAGCGCCTACGCAGTGCCAACGAGCTCCTGAGCA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTGCTCAGGAGCTCGTTaGCACTGCGTAGGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSCSGAR*HCVGAG
Trigger: CCCAGCGCCTACGCAGTGCCAACGAGCTCCTGAGCA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTAGCTGCCGGGAGAGCTaGGCCAACTGCTCCTGCAGA +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPSCRES*ANCSCR
Trigger: TCTGCAGGAGCAGTTGGCCCAGCTCTCCCGGCAGCT...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAGCTGCCGGGAGAGCTaGGCCAACTGCTCCTGCAGA +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSSCRES*ANCSCR
Trigger: TCTGCAGGAGCAGTTGGCCCAGCTCTCCCGGCAGCT...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACGCTCTCCAGCCTCCTTaGCTACAGACACTCGAGCCT +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYALQPP*LQTLEP
Trigger: AGGCTCGAGTGTCTGTAGCCAAGGAGGCTGGAGAGC...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGCCATCTGGTCCAGCGTaGCCCTGCACTCCCGCTTGC +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEPSGPA*PCTPAC
Trigger: GCAAGCGGGAGTGCAGGGCCACGCTGGACCAGATGG...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGCTGACTTTCTCCTaGCTGGCTCGGAGCTCGCTC +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEALLTFS*LARSSL
Trigger: GAGCGAGCTCCGAGCCAGCCAGGAGAAAGTCAGCAA...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGAGTCCACCCGATCCTaGAGGGCCTGCGCATGGGCC +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLESTRS*RACAWA
Trigger: GGCCCATGCGCAGGCCCTCCAGGATCGGGTGGACTC...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGAGGCTGGCGCTGCTCTaGGTCAGGGCATCTGTCAAG +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQRLALL*VRASVK
Trigger: CTTGACAGATGCCCTGACCCAGAGCAGCGCCAGCCT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGTGCAGCTGCTGCAGCTaGCCCTCAGCATCGCCCCGC +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVCSCCS*PSASPR
Trigger: GCGGGGCGATGCTGAGGGCCAGCTGCAGCAGCTGCA...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCACGCAGGGTGTCCTCATaGCTTCGAAGCTTCTCCCGC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSRRVSS*LRSFSR
Trigger: GCGGGAGAAGCTTCGAAGCCATGAGGACACCCTGCG...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGGCTGTGCCTTCAGTGTaGATACCTGCTCCTCGAGCC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQAVPSV*IPAPRA
Trigger: GGCTCGAGGAGCAGGTATCCACACTGAAGGCACAGC...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACGCTGTGCCTTCAGTGTaGATACCTGCTCCTCGAGCC +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYAVPSV*IPAPRA
Trigger: GGCTCGAGGAGCAGGTATCCACACTGAAGGCACAGC...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGAGCAGGCTGGCTCCCTaGAAGTCCTGGACCCGGTTC +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLSRLAP*KSWTRF
Trigger: GAACCGGGTCCAGGACTTCCAGGGAGCCAGCCTGCT...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR CCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGCCATCTCTGGGACCTaGAGTGGGGCTGGGGTCTCA +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLAISGT*SGAGVS
Trigger: TGAGACCCCAGCCCCACTCCAGGTCCCAGAGATGGC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR TCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGCGCTTGTGCAGGGCTaGGTGGATCAGCGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLALVQG*VDQREC
Trigger: ACACTCACGCTGATCCACTCAGCCCTGCACAAGCGC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTCGTCCACGCATGTCCTaGACCTGTAGCTGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSRPRMS*TCSWRL
Trigger: CAAGCGCCAGCTACAGGTTCAGGACATGCGTGGACG...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTCTCCTTAGTCAGCCCTaGGCGCTTCACCTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPLLSQP*ALHLQL
Trigger: CAGCTGGAGGTGAAGCGCTCAGGGCTGACTAAGGAG...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCCAGCTGCTTGGCCCTTaGGGCTGCATGGTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSQLLGP*GCMVSL
Trigger: GAGAGAGACCATGCAGCCTCAAGGGCCAAGCAGCTG...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCATCTCCAGTGCCAGCTaGGCCTGCAGAGATCCTGCC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSISSAS*ACRDPA
Trigger: GGCAGGATCTCTGCAGGCTCAGCTGGCACTGGAGAT...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCAGCTGGTTTTCCTCCTaGAGCGACAGCAGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVASWFSS*SDSSEA
Trigger: GGCCTCACTGCTGTCGCTGCAGGAGGAAAACCAGCT...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTAGCTGGTTTTCCTCCTaGAGCGACAGCAGTGAGGCC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSSWFSS*SDSSEA
Trigger: GGCCTCACTGCTGTCGCTGCAGGAGGAAAACCAGCT...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGGAGCTGCCTCTGCCTTaGTCTCAGCCCGATGCAGGC +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEELPLP*SQPDAG
Trigger: GCCTGCATCGGGCTGAGAGCAAGGCAGAGGCAGCTC...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTCTCCAGAGCTGCCTCTaGCTTGCTCTCAGCCCGATG +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSLQSCL*LALSPM
Trigger: CATCGGGCTGAGAGCAAGGCAGAGGCAGCTCTGGAG...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGTCCTCTAGTTGGGCCTaGAGCAGCTTTTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPSSSWA*SSFCFS
Trigger: GGAGAAGCAAAAGCTGCTGCAGGCCCAACTAGAGGA...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGAGCTTGGCCTGTAGCTaGTCCTCTAGTTGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQSLACS*SSSWAC
Trigger: GCAGGCCCAACTAGAGGAGCAGCTACAGGCCAAGCT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTCTGAGCTGCTGAGCTaGACACCACTCTCAGTGTCA +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDSELLS*TPLSVS
Trigger: TGACACTGAGAGTGGTGTGCAGCTCAGCAGCTCAGA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTGCTGCTGGGTCACCTaGAGGCTGTGGGTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSCCWVT*RLWVRF
Trigger: GAACCTGACCCACAGCCTGCAGGTGACCCAGCAGCA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGTCCAGCTGTTCCAGCTaGCTATGGCTGCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLSSCSS*LWLRSS
Trigger: GCTGGAGCGCAGCCATAGGCAGCTGGAACAGCTGGA...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTTCCAGCTGTTCCAGCTaGCTATGGCTGCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPSSCSS*LWLRSS
Trigger: GCTGGAGCGCAGCCATAGGCAGCTGGAACAGCTGGA...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACTGCAGTACATCCCTCTaGAGTATGGCGCAGCTCAGT +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDCSTSL*SMAQLS
Trigger: ACTGAGCTGCGCCATACTGCAGAGGGATGTACTGCA...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACGATGGCTGCGTTCGCTaGGCAGTACAAGGATCTGTT +
Preference number: 4 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDDGCVR*AVQGSV
Trigger: AACAGATCCTTGTACTGCGCAGCGAACGCAGCCATC...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTGGGCCAACTGCTCCTaGAGATGGCTGCGTTCGCTG +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSWANCS*RWLRSL
Trigger: CAGCGAACGCAGCCATCTGCAGGAGCAGTTGGCCCA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCGAGAGCTGGGCCAACTaGTCCTGCAGATGGCTGCGT +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSESWAN*SCRWLR
Trigger: ACGCAGCCATCTGCAGGAGCAGTTGGCCCAGCTCTC...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGTCCCGTCCACTCAGCTaGCGGGAGAGCTGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLSRPLS*RESWAN
Trigger: GTTGGCCCAGCTCTCCCGGCAGCTGAGTGGACGGGA...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTCTGTGGATGTTACCTaGTGCCGTAGGCCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVASVDVT*CRRPAS
Trigger: GCTGGCAGGCCTACGGCAGCAGGTAACATCCACAGA...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCATCTGTGGATGTTACCTaGTGCCGTAGGCCTGCCAGC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSSVDVT*CRRPAS
Trigger: GCTGGCAGGCCTACGGCAGCAGGTAACATCCACAGA...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGCCTCCCGCTCGGCTTaGACTAGCTTCTGGGTCATC +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLASRSA*TSFWVI
Trigger: GATGACCCAGAAGCTAGTGCAAGCCGAGCGGGAGGC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCGCAGAGAGGCCTGTaGCTCCCGCTCGGCTTGCAC +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSPQRGL*LPLGLH
Trigger: GTGCAAGCCGAGCGGGAGGCACAGGCCTCTCTGCGG...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGAGCTCCTCTCGCTCCTaGTGCAGCTGGCCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLSSSRS*CSWPCS
Trigger: GCTGCAGGGCCAGCTGCAGCAGGAGCGAGAGGAGCT...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGCTCCGCCTTCTTCACTaGAGACCTCAGCTCCTCGTT +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQLRLLH*RPQLLV
Trigger: AACGAGGAGCTGAGGTCTGCAGTGAAGAAGGCGGAG...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGGCTCCCGGCCCAGCCTaGCATTGTCACTGTCCAGTG +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEAPGPA*HCHCPV
Trigger: CACTGGACAGTGACAATGGCAGGCTGGGCCGGGAGC...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTACTGCCTTCTGCAGCTaGTTGGCCCTTGAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSTAFCS*LALEAA
Trigger: TGCAGCCTCAAGGGCCAAGCAGCTGCAGAAGGCAGT...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAACTGCCTTCTGCAGCTaGTTGGCCCTTGAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSTAFCS*LALEAA
Trigger: TGCAGCCTCAAGGGCCAAGCAGCTGCAGAAGGCAGT...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCACTGCCTTCTGCAGCTaGTTGGCCCTTGAGGCTGCA +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVATAFCS*LALEAA
Trigger: TGCAGCCTCAAGGGCCAAGCAGCTGCAGAAGGCAGT...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGACTCTCTTCCTGCAGTaGCAGCTCTGCCTGGGCCCC +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSETLFLQ*QLCLGP
Trigger: GGGGCCCAGGCAGAGCTGGCACTGCAGGAAGAGAGT...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACTCGCGCTTCAGACAATaGCTGTCTGGCTGCATCCAG +
Preference number: 4 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYSRFRQ*LSGCIQ
Trigger: CTGGATGCAGCCAGACAGGCATTGTCTGAAGCGCGA...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGAGCGCCTGCTGCAGCTaGTGCAGCTGGCCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVSACCS*CSWPSA
Trigger: TGCTGAGGGCCAGCTGCAGCAGCTGCAGCAGGCGCT...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGCGGATGCCGAGCTCCTaGGAAGCTCCTGGTGTAGCT +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLRMPSS*EAPGVA
Trigger: AGCTACACCAGGAGCTTCGCAGGAGCTCGGCATCCG...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCATGCAGAATCTTGGCCTaGAGCCGCTGCACTAGCTGG +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSCRILA*SRCTSW
Trigger: CCAGCTAGTGCAGCGGCTGCAGGCCAAGATTCTGCA...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR GCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGGACCTGTCCATCAGCTaGTTCTCCAGCTCTGAGCAC +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQDLSIS*FSSSEH
Trigger: GTGCTCAGAGCTGGAGAAGCAGCTGATGGACAGGTC...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR CCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTTCACCTGGGCCAGGCTaGCACTTCTCTGCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSSPGPG*HFSAVP
Trigger: AGGAACAGCAGAGAAGTGCCAGCCTGGCCCAGGTGA...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGGCATCCTCTTGGGCCTaGGCTGAGGCTGCTGTCTGG +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEASSWA*AEAAVW
Trigger: CCAGACAGCAGCCTCAGCCCAGGCCCAAGAGGATGC...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCGCTGCGCATCCTCTTaGGCCTGGGCTGAGGCTGCT +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLRCASS*AWAEAA
Trigger: AGCAGCCTCAGCCCAGGCCCAAGAGGATGCGCAGCG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGTGTTCCAGCTGCCTATaGCTGCGCTCCAGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSECSSCL*LRSSSR
Trigger: CCGGGAGCTGGAGCGCAGCCATAGGCAGCTGGAACA...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGGGCCTGCTTCAGCCTTaGTTAGCGCCTCGGCCACCT +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEGLLQP*LAPRPP
Trigger: AGGTGGCCGAGGCGCTAACCAAGGCTGAAGCAGGCC...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCAGCTGCCGGGAGAGCTaGGCCAACTGCTCCTGCAGA +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGSCRES*ANCSCR
Trigger: TCTGCAGGAGCAGTTGGCCCAGCTCTCCCGGCAGCT...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTGTTCCTGCCGGCTCTaGGCATCTCGCTTCTGCCGT +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSCSCRL*ASRFCR
Trigger: ACGGCAGAAGCGAGATGCCCAGAGCCGGCAGGAACA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGTGTTCCTGCCGGCTCTaGGCATCTCGCTTCTGCCGT +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLCSCRL*ASRFCR
Trigger: ACGGCAGAAGCGAGATGCCCAGAGCCGGCAGGAACA...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGCCCTTGAGGCTGCATaGTCTCTCTCTGCCTCCATC +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQALEAA*SLSASI
Trigger: GATGGAGGCAGAGAGAGACCATGCAGCCTCAAGGGC...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCGCCCTTGAGGCTGCATaGTCTCTCTCTGCCTCCATC +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVAALEAA*SLSASI
Trigger: GATGGAGGCAGAGAGAGACCATGCAGCCTCAAGGGC...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCCATCTGGTCCAGCGTaGCCCTGCACTCCCGCTTGC +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLPSGPA*PCTPAC
Trigger: GCAAGCGGGAGTGCAGGGCCACGCTGGACCAGATGG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGAGGCTGGCGCTGCTCTaGGTCAGGGCATCTGTCAAG +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLRLALL*VRASVK
Trigger: CTTGACAGATGCCCTGACCCAGAGCAGCGCCAGCCT...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGGCTGCAGCTCCAGGCTaGCCAGCTCGCCCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVAAAPG*PARPSK
Trigger: CTTTGAGGGGCGAGCTGGCCAGCCTGGAGCTGCAGC...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCTGCAGCTCCAGGCTaGCCAGCTCGCCCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLAAAPG*PARPSK
Trigger: CTTTGAGGGGCGAGCTGGCCAGCCTGGAGCTGCAGC...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTTCTCAGCTTCCAGCTaGGCCAGGGCTCGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSFSASS*ARARCR
Trigger: TCTGCAGCGAGCCCTGGCCCAGCTGGAAGCTGAGAA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTCGCAGGGTGTCCTCATaGCTTCGAAGCTTCTCCCGC +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSRRVSS*LRSFSR
Trigger: GCGGGAGAAGCTTCGAAGCCATGAGGACACCCTGCG...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCAGAGAGGGTCCTGTTaGCCTGGTCCTTCTCTGAGT +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSQRGSC*PGPSLS
Trigger: ACTCAGAGAAGGACCAGGTCAACAGGACCCTCTCTG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCTGCGCTCTGAGCTGCTaGGCTGCACACCACTCTCAG +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGCALSC*AAHHSQ
Trigger: CTGAGAGTGGTGTGCAGCTCAGCAGCTCAGAGCGCA...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGGCGCTTGTGCAGGGCTaGGTGGATCAGCGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEALVQG*VDQREC
Trigger: ACACTCACGCTGATCCACTCAGCCCTGCACAAGCGC...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCGTCCACGCATGTCCTaGACCTGTAGCTGGCGCTTG +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGRPRMS*TCSWRL
Trigger: CAAGCGCCAGCTACAGGTTCAGGACATGCGTGGACG...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTGGCCTTCATCTTGCTaGCTTTCTCCTGGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVAWPSSC*LSPGWL
Trigger: GAGCCAGCCAGGAGAAAGTCAGCAAGATGAAGGCCA...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTTGGCCAGTGCCCCACTaGGCCGCTCCACTGTCAGCT +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSWPVPH*AAPLSA
Trigger: AGCTGACAGTGGAGCGGCTCAGTGGGGCACTGGCCA...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTGCAGATTCTTGTCCTaGGTGCTGCTGAGGCTGGCG +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSCRFLS*VLLRLA
Trigger: CGCCAGCCTCAGCAGCACTCAGGACAAGAATCTGCA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGTGCAGATTCTTGTCCTaGGTGCTGCTGAGGCTGGCG +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLCRFLS*VLLRLA
Trigger: CGCCAGCCTCAGCAGCACTCAGGACAAGAATCTGCA...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGCACACTGCCTCCCGCTaGTCCAGCTCCTTACAGCTG +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEHTASR*SSSLQL
Trigger: CAGCTGTAAGGAGCTGGAGCAGCGGGAGGCAGTGTG...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGAGCTGCCTCTGCCTTaGTCTCAGCCCGATGCAGGC +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLELPLP*SQPDAG
Trigger: GCCTGCATCGGGCTGAGAGCAAGGCAGAGGCAGCTC...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCATTGCTTCTCCAGAGCTaGCTCTGCCTTGCTCTCAGC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSLLLQS*LCLALS
Trigger: GCTGAGAGCAAGGCAGAGGCAGCTCTGGAGAAGCAA...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTGCTTCTCCAGAGCTaGCTCTGCCTTGCTCTCAGC +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVALLLQS*LCLALS
Trigger: GCTGAGAGCAAGGCAGAGGCAGCTCTGGAGAAGCAA...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTGCAGTACATCCCTCTaGAGTATGGCGCAGCTCAGT +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEACSTSL*SMAQLS
Trigger: ACTGAGCTGCGCCATACTGCAGAGGGATGTACTGCA...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTTCCCGTCCACTCAGCTaGCGGGAGAGCTGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSSRPLS*RESWAN
Trigger: GTTGGCCCAGCTCTCCCGGCAGCTGAGTGGACGGGA...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTGCCCTCCCGCTCTGCTaGTGCCAGCTTCACTGCCAG +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSALPLC*CQLHCQ
Trigger: CTGGCAGTGAAGCTGGCAGCAGCAGAGCGGGAGGGC...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGCTCCTTGTCCAAGGCTaGCTTCTCTTCTGTGGATGT +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPLLVQG*LLFCGC
Trigger: ACATCCACAGAAGAGAAGGCAGCCTTGGACAAGGAG...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCAGCCTCCTTCTCATaGTGCAGTCTCTGGAGATCC +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSAASFS*CSLWRS
Trigger: GGATCTCCAGAGACTGCAGCATGAGAAGGAGGCTGC...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCCTCCGCCTTCTTCACTaGAGACCTCAGCTCCTCGTT +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVALRLLH*RPQLLV
Trigger: AACGAGGAGCTGAGGTCTGCAGTGAAGAAGGCGGAG...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCTCCGCCTTCTTCACTaGAGACCTCAGCTCCTCGTT +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSLRLLH*RPQLLV
Trigger: AACGAGGAGCTGAGGTCTGCAGTGAAGAAGGCGGAG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTCAGGGCTTCCAGGCTaGTCTCGCCTTTCAGCAACC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSSGLPG*SRLSAT
Trigger: GGTTGCTGAAAGGCGAGAGCAGCCTGGAAGCCCTGA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCTCGGCCTCTTGCTCCTaGAGCTTCCTCTGGGAACCC +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGSASCS*SFLWEP
Trigger: GGGTTCCCAGAGGAAGCTGCAGGAGCAAGAGGCCGA...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCCCCTGCACTCCCGCTTaGTACGTCGCACACTCTCTT +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSPCTPA*YVAHSL
Trigger: AAGAGAGTGTGCGACGTAGCAAGCGGGAGTGCAGGG...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCCTTCACCTCACTGTCTaGCACCTGTCTCTGCAGGGA +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVALHLTV*HLSLQG
Trigger: TCCCTGCAGAGACAGGTGGCAGACAGTGAGGTGAAG...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGCTTCACCTCACTGTCTaGCACCTGTCTCTGCAGGGA +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQLHLTV*HLSLQG
Trigger: TCCCTGCAGAGACAGGTGGCAGACAGTGAGGTGAAG...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTTCGCGCTTCAGACAATaGCTGTCTGGCTGCATCCAG +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSSRFRQ*LSGCIQ
Trigger: CTGGATGCAGCCAGACAGGCATTGTCTGAAGCGCGA...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTCGCCCCTCAAAGTCTaGACCTGTTCACCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSSPLKV*TCSPRE
Trigger: CTCCCTGGGTGAACAGGTGCAGACTTTGAGGGGCGA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTAGCGCCTGCTGCAGCTaGTGCAGCTGGCCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSSACCS*CSWPSA
Trigger: TGCTGAGGGCCAGCTGCAGCAGCTGCAGCAGGCGCT...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTGGGCTCGCTGCAGACTaGCCAGGCGCTCCTGCAACA +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSGLAAD*PGAPAT
Trigger: TGTTGCAGGAGCGCCTGGGCAGTCTGCAGCGAGCCC...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGTCTGTACCTGGGCACTaGGCAGGCGTTCAACCTCCT +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLSVPGH*AGVQPP
Trigger: AGGAGGTTGAACGCCTGCGCAGTGCCCAGGTACAGA...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTGTCCCTCAGTCGCTaGTGCTCCAGTTCAGTAGAC +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQVSLSR*CSSSVD
Trigger: GTCTACTGAACTGGAGCAGCAGCGACTGAGGGACAC...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR CCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGTCACCTGGGCCAGGCTaGCACTTCTCTGCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLSPGPG*HFSAVP
Trigger: AGGAACAGCAGAGAAGTGCCAGCCTGGCCCAGGTGA...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGTCCTCGCTCAGAGCCTaGTTGGCCAAGTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSESSLRA*LAKLAW
Trigger: CCAGGCCAACTTGGCCAACCAGGCTCTGAGCGAGGA...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTAGCTTCTCCAGCTCCTaGCGCAGCTCCTTAGCTTGC +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSSFSSS*RSSLAC
Trigger: GCAAGCTAAGGAGCTGCGCCAGGAGCTGGAGAAGCT...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGTGTTCCAGCTGCCTATaGCTGCGCTCCAGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVCSSCL*LRSSSR
Trigger: CCGGGAGCTGGAGCGCAGCCATAGGCAGCTGGAACA...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTCCATCTCCAGAGAGATaGCAGCCAGACTGTGCCGAG +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSPSPER*QPDCAE
Trigger: CTCGGCACAGTCTGGCTGCCATCTCTCTGGAGATGG...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGCTCTCCAGCCTCCTTaGCTACAGACACTCGAGCCT +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLALQPP*LQTLEP
Trigger: AGGCTCGAGTGTCTGTAGCCAAGGAGGCTGGAGAGC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTCCTGCAGCTTCCTCTaGGAACCCTGGAGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSSCSFL*EPWSSC
Trigger: ACAGGAGCTCCAGGGTTCCCAGAGGAAGCTGCAGGA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGTCCTGCAGCTTCCTCTaGGAACCCTGGAGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLSCSFL*EPWSSC
Trigger: ACAGGAGCTCCAGGGTTCCCAGAGGAAGCTGCAGGA...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTCCTGCAGCTTCCTCTaGGAACCCTGGAGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSSCSFL*EPWSSC
Trigger: ACAGGAGCTCCAGGGTTCCCAGAGGAAGCTGCAGGA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTGCCCTTGAGGCTGCATaGTCTCTCTCTGCCTCCATC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPALEAA*SLSASI
Trigger: GATGGAGGCAGAGAGAGACCATGCAGCCTCAAGGGC...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTTGCTGACTTTCTCCTaGCTGGCTCGGAGCTCGCTC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSLLTFS*LARSSL
Trigger: GAGCGAGCTCCGAGCCAGCCAGGAGAAAGTCAGCAA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGCTGTGCCTTCAGTGTaGATACCTGCTCCTCGAGCC +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSAVPSV*IPAPRA
Trigger: GGCTCGAGGAGCAGGTATCCACACTGAAGGCACAGC...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGGACCTGGTCCTTCTCTaGGTTCTGATTCTGAAGGTG +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQDLVLL*VLILKV
Trigger: CACCTTCAGAATCAGAACTCAGAGAAGGACCAGGTC...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGTGCGCTCTGAGCTGCTaGGCTGCACACCACTCTCAG +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVCALSC*AAHHSQ
Trigger: CTGAGAGTGGTGTGCAGCTCAGCAGCTCAGAGCGCA...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCTGGCCTTCATCTTGCTaGCTTTCTCCTGGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSWPSSC*LSPGWL
Trigger: GAGCCAGCCAGGAGAAAGTCAGCAAGATGAAGGCCA...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCTGCAGATTCTTGTCCTaGGTGCTGCTGAGGCTGGCG +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGCRFLS*VLLRLA
Trigger: CGCCAGCCTCAGCAGCACTCAGGACAAGAATCTGCA...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCACACTGCCTCCCGCTaGTCCAGCTCCTTACAGCTG +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLHTASR*SSSLQL
Trigger: CAGCTGTAAGGAGCTGGAGCAGCGGGAGGCAGTGTG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCTCCAGAGCTGCCTCTaGCTTGCTCTCAGCCCGATG +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLLQSCL*LALSPM
Trigger: CATCGGGCTGAGAGCAAGGCAGAGGCAGCTCTGGAG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTTGCTTCTCCAGAGCTaGCTCTGCCTTGCTCTCAGC +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSLLLQS*LCLALS
Trigger: GCTGAGAGCAAGGCAGAGGCAGCTCTGGAGAAGCAA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCGCCTGCAGCAGCTTTTaGTTCTCCAGAGCTGCCTCT +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSACSSF*FSRAAS
Trigger: AGAGGCAGCTCTGGAGAAGCAAAAGCTGCTGCAGGC...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCATCCTCTAGTTGGGCCTaGAGCAGCTTTTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSSSSWA*SSFCFS
Trigger: GGAGAAGCAAAAGCTGCTGCAGGCCCAACTAGAGGA...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTCCTCTAGTTGGGCCTaGAGCAGCTTTTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQSSSWA*SSFCFS
Trigger: GGAGAAGCAAAAGCTGCTGCAGGCCCAACTAGAGGA...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTTCTGAGCTGCTGAGCTaGACACCACTCTCAGTGTCA +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSSELLS*TPLSVS
Trigger: TGACACTGAGAGTGGTGTGCAGCTCAGCAGCTCAGA...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGTGCTGCTGGGTCACCTaGAGGCTGTGGGTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLCCWVT*RLWVRF
Trigger: GAACCTGACCCACAGCCTGCAGGTGACCCAGCAGCA...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTGCAGTACATCCCTCTaGAGTATGGCGCAGCTCAGT +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQCSTSL*SMAQLS
Trigger: ACTGAGCTGCGCCATACTGCAGAGGGATGTACTGCA...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTGCAGTACATCCCTCTaGAGTATGGCGCAGCTCAGT +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVACSTSL*SMAQLS
Trigger: ACTGAGCTGCGCCATACTGCAGAGGGATGTACTGCA...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTGTGGCATGTTCTGCCTaGTGCTGGCGGCCCAGGAGT +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSVACSA*CWRPRS
Trigger: ACTCCTGGGCCGCCAGCAGCAGGCAGAACATGCCAC...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCGATGGCTGCGTTCGCTaGGCAGTACAAGGATCTGTT +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVADGCVR*AVQGSV
Trigger: AACAGATCCTTGTACTGCGCAGCGAACGCAGCCATC...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGAGAGCTGGGCCAACTaGTCCTGCAGATGGCTGCGT +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLESWAN*SCRWLR
Trigger: ACGCAGCCATCTGCAGGAGCAGTTGGCCCAGCTCTC...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGGCCTCCCGCTCGGCTTaGACTAGCTTCTGGGTCATC +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVASRSA*TSFWVI
Trigger: GATGACCCAGAAGCTAGTGCAAGCCGAGCGGGAGGC...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCGCAGCCTCCTTCTCATaGTGCAGTCTCTGGAGATCC +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSAASFS*CSLWRS
Trigger: GGATCTCCAGAGACTGCAGCATGAGAAGGAGGCTGC...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCTGCTTTTCGCTCTCTaGCAGCAGCAGGCCCTCGTC +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLLLFAL*QQQALV
Trigger: GACGAGGGCCTGCTGCTGGCAGAGAGCGAAAAGCAG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTCTCCGCCTTCTTCACTaGAGACCTCAGCTCCTCGTT +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPLRLLH*RPQLLV
Trigger: AACGAGGAGCTGAGGTCTGCAGTGAAGAAGGCGGAG...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTTCGCTCTCGGTGGCCTaGAGGCTCCTCTCCAGCACT +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSSLSVA*RLLSST
Trigger: AGTGCTGGAGAGGAGCCTGCAGGCCACCGAGAGCGA...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCCTTCACCTCACTGTCTaGCACCTGTCTCTGCAGGGA +
Preference number: 4 (lower is better)
Translates to: LGHQEALPGEARGSTGCSLHLTV*HLSLQG
Trigger: TCCCTGCAGAGACAGGTGGCAGACAGTGAGGTGAAG...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTTCGCGCTTCAGACAATaGCTGTCTGGCTGCATCCAG +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPSRFRQ*LSGCIQ
Trigger: CTGGATGCAGCCAGACAGGCATTGTCTGAAGCGCGA...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTCCAAATGTTGGATCTaGTGTTGGGCCTCGGCCAGG +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSSKCWI*CWASAR
Trigger: CCTGGCCGAGGCCCAACAGCAGATCCAACATTTGGA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTTTGTGCAGGGCTGAGTaGATCAGCGTGAGTGTGGAG +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPLCRAE*ISVSVE
Trigger: CTCCACACTCACGCTGATCCACTCAGCCCTGCACAA...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGCCAGCAGTTCTTGGCTaGCTTCATAGCGTCCACGCA +
Preference number: 4 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLPAVLG*LHSVHA
Trigger: TGCGTGGACGCTATGAAGCCAGCCAAGAACTGCTGG...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTGCATCCTCTTGGGCCTaGGCTGAGGCTGCTGTCTGG +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSASSWA*AEAAVW
Trigger: CCAGACAGCAGCCTCAGCCCAGGCCCAAGAGGATGC...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGTCAGGGCACTCATCTTaGATAAGGAGTCTCGCAGGG +
Preference number: 4 (lower is better)
Translates to: RELLTGCQGQTLGAALAQSGHSS*IRSLAG
Trigger: CCCTGCGAGACTCCTTATCCAAGATGAGTGCCCTGA...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTCAGGGCACTCATCTTaGATAAGGAGTCTCGCAGGG +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVASGHSS*IRSLAG
Trigger: CCCTGCGAGACTCCTTATCCAAGATGAGTGCCCTGA...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCCTGCCTTCTCTTCTGTaGATGTTACCTGCTGCCGTA +
Preference number: 4 (lower is better)
Translates to: SRTDAGGCSGSGSLSGEALPSLL*MLPAAV
Trigger: TACGGCAGCAGGTAACATCCACAGAAGAGAAGGCAG...GGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGCTGCCTTCTCTTCTGTaGATGTTACCTGCTGCCGTA +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQLPSLL*MLPAAV
Trigger: TACGGCAGCAGGTAACATCCACAGAAGAGAAGGCAG...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTTCATGCTGCAGTCTCTaGAGATCCTCCTCATGGGCT +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSSCCSL*RSSSWA
Trigger: AGCCCATGAGGAGGATCTCCAGAGACTGCAGCATGA...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGTTCTCAGCTTCCAGCTaGGCCAGGGCTCGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVFSASS*ARARCR
Trigger: TCTGCAGCGAGCCCTGGCCCAGCTGGAAGCTGAGAA...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
3UTR CAA 72 bp GGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTaGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTG +
Preference number: 4 (lower is better)
Translates to: GCSGSGSLSGEA*FCCCQKQVLSL
Trigger: CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCAGAGAGGGTCCTGTTaGCCTGGTCCTTCTCTGAGT +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGQRGSC*PGPSLS
Trigger: ACTCAGAGAAGGACCAGGTCAACAGGACCCTCTCTG...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCTCCTTAGTCAGCCCTaGGCGCTTCACCTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSLLSQP*ALHLQL
Trigger: CAGCTGGAGGTGAAGCGCTCAGGGCTGACTAAGGAG...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGTGGCCTTCATCTTGCTaGCTTTCTCCTGGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSEWPSSC*LSPGWL
Trigger: GAGCCAGCCAGGAGAAAGTCAGCAAGATGAAGGCCA...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTTCCTCTAGTTGGGCCTaGAGCAGCTTTTGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPSSSWA*SSFCFS
Trigger: GGAGAAGCAAAAGCTGCTGCAGGCCCAACTAGAGGA...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTGATGGCTGCGTTCGCTaGGCAGTACAAGGATCTGTT +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPDGCVR*AVQGSV
Trigger: AACAGATCCTTGTACTGCGCAGCGAACGCAGCCATC...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCTCCTTGTCCAAGGCTaGCTTCTCTTCTGTGGATGT +
Preference number: 4 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSLLVQG*LLFCGC
Trigger: ACATCCACAGAAGAGAAGGCAGCCTTGGACAAGGAG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCCTCCTTGTCCAAGGCTaGCTTCTCTTCTGTGGATGT +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVALLVQG*LLFCGC
Trigger: ACATCCACAGAAGAGAAGGCAGCCTTGGACAAGGAG...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCTCGCTCTCAGCGACTaGCTTCTGCAGCTGCTTGGC +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSLALSD*LLQLLG
Trigger: GCCAAGCAGCTGCAGAAGGCAGTCGCTGAGAGCGAG...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGTCGCCCCTCAAAGTCTaGACCTGTTCACCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVSPLKV*TCSPRE
Trigger: CTCCCTGGGTGAACAGGTGCAGACTTTGAGGGGCGA...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGTCGCCCCTCAAAGTCTaGACCTGTTCACCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLSPLKV*TCSPRE
Trigger: CTCCCTGGGTGAACAGGTGCAGACTTTGAGGGGCGA...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCTTGTGCAGGGCTGAGTaGATCAGCGTGAGTGTGGAG +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGLCRAE*ISVSVE
Trigger: CTCCACACTCACGCTGATCCACTCAGCCCTGCACAA...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTTCAGGGCACTCATCTTaGATAAGGAGTCTCGCAGGG +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPSGHSS*IRSLAG
Trigger: CCCTGCGAGACTCCTTATCCAAGATGAGTGCCCTGA...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCCTGCCTTCTCTTCTGTaGATGTTACCTGCTGCCGTA +
Preference number: 4 (lower is better)
Translates to: LLTGCQGQTLGAALAQVALPSLL*MLPAAV
Trigger: TACGGCAGCAGGTAACATCCACAGAAGAGAAGGCAG...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTTCATGCTGCAGTCTCTaGAGATCCTCCTCATGGGCT +
Preference number: 4 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPSCCSL*RSSSWA
Trigger: AGCCCATGAGGAGGATCTCCAGAGACTGCAGCATGA...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR TCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCAGAGAGGGTCCTGTTaGCCTGGTCCTTCTCTGAGT +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLQRGSC*PGPSLS
Trigger: ACTCAGAGAAGGACCAGGTCAACAGGACCCTCTCTG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGTCCAAATGTTGGATCTaGTGTTGGGCCTCGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLSKCWI*CWASAR
Trigger: CCTGGCCGAGGCCCAACAGCAGATCCAACATTTGGA...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTTCACCTGGGCCAGGCTaGCACTTCTCTGCTGTTCCT +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSSPGPG*HFSAVP
Trigger: AGGAACAGCAGAGAAGTGCCAGCCTGGCCCAGGTGA...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGTTGTGCAGGGCTGAGTaGATCAGCGTGAGTGTGGAG +
Preference number: 4 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVLCRAE*ISVSVE
Trigger: CTCCACACTCACGCTGATCCACTCAGCCCTGCACAA...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCCAGCAGTTCTTGGCTaGCTTCATAGCGTCCACGCA +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLPAVLG*LHSVHA
Trigger: TGCGTGGACGCTATGAAGCCAGCCAAGAACTGCTGG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTAGCTTCTCCAGCTCCTaGCGCAGCTCCTTAGCTTGC +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSSFSSS*RSSLAC
Trigger: GCAAGCTAAGGAGCTGCGCCAGGAGCTGGAGAAGCT...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGTCAGGGCACTCATCTTaGATAAGGAGTCTCGCAGGG +
Preference number: 4 (lower is better)
Translates to: QEALPGEARGSTGCSNSESGHSS*IRSLAG
Trigger: CCCTGCGAGACTCCTTATCCAAGATGAGTGCCCTGA...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGTTTTCTTCCTCTAGCTaGGCGATAAGGCGGTTTAAT +
Preference number: 4 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPFSSSS*AIRRFN
Trigger: ATTAAACCGCCTTATCGCCCAGCTAGAGGAAGAAAA...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCATCTCCAGAGAGATaGCAGCCAGACTGTGCCGAG +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSPSPER*QPDCAE
Trigger: CTCGGCACAGTCTGGCTGCCATCTCTCTGGAGATGG...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTGCTGTGCCTTCAGTGTaGATACCTGCTCCTCGAGCC +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSAVPSV*IPAPRA
Trigger: GGCTCGAGGAGCAGGTATCCACACTGAAGGCACAGC...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCTCCTTGTCCAAGGCTaGCTTCTCTTCTGTGGATGT +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGLLVQG*LLFCGC
Trigger: ACATCCACAGAAGAGAAGGCAGCCTTGGACAAGGAG...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGTTTTCTTCCTCTAGCTaGGCGATAAGGCGGTTTAAT +
Preference number: 4 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQFSSSS*AIRRFN
Trigger: ATTAAACCGCCTTATCGCCCAGCTAGAGGAAGAAAA...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGTCATGCTGCAGTCTCTaGAGATCCTCCTCATGGGCT +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLSCCSL*RSSSWA
Trigger: AGCCCATGAGGAGGATCTCCAGAGACTGCAGCATGA...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR GCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTTCTGAGCTGCTGAGCTaGACACCACTCTCAGTGTCA +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSSELLS*TPLSVS
Trigger: TGACACTGAGAGTGGTGTGCAGCTCAGCAGCTCAGA...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCTGCCTTCTCTTCTGTaGATGTTACCTGCTGCCGTA +
Preference number: 4 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLLPSLL*MLPAAV
Trigger: TACGGCAGCAGGTAACATCCACAGAAGAGAAGGCAG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTTCATGCTGCAGTCTCTaGAGATCCTCCTCATGGGCT +
Preference number: 4 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSSCCSL*RSSSWA
Trigger: AGCCCATGAGGAGGATCTCCAGAGACTGCAGCATGA...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTTTTCTTCCTCTAGCTaGGCGATAAGGCGGTTTAAT +
Preference number: 4 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSFSSSS*AIRRFN
Trigger: ATTAAACCGCCTTATCGCCCAGCTAGAGGAAGAAAA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CCA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCTTTTCTTCCTCTAGCTaGGCGATAAGGCGGTTTAAT +
Preference number: 4 (lower is better)
Translates to: PFWGSLVLLLPETSALPGFSSSS*AIRRFN
Trigger: ATTAAACCGCCTTATCGCCCAGCTAGAGGAAGAAAA...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 90 bp GCCTGCGCATGGGCCTCCCGGTCCCCCAGGCCGAGGCGGCTGCGCTaGAGCTCGCCCTCAAGAGCGCGCCGCTGCAGCTCCAGTTTGATG +
Preference number: 5 (lower is better)
Translates to: ACAWASRSPRPRRLR*SSPSRARRCSSSLM
Trigger: CATCAAACTGGAGCTGCAGCGGCGCGCTCTTGAGGGCGAGCTGCAGCGCAGCCGCCTCGGCCTGGGGGACCGGGAGGCCCATGCGCAGGC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 90 bp CTCTCAGCCCGATGCAGGCTGGCACTCAGTCCGAGGCCCAGCTCCTaGACAGCCCGGGATGTGCGGACGAGCTCCCCGCCCAGCTGCAAC +
Preference number: 5 (lower is better)
Translates to: LSARCRLALSPRPSS*TARDVRTSSPPSCN
Trigger: GTTGCAGCTGGGCGGGGAGCTCGTCCGCACATCCCGGGCTGTCCAGGAGCTGGGCCTCGGACTGAGTGCCAGCCTGCATCGGGCTGAGAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGAGGGCCTCCCGCTCCTaGGCGCCCTCACTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPRASRS*APSLRL
Trigger: CAGCCTGAGTGAGGGCGCCAAGGAGCGGGAGGCCCT...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 90 bp GGCGGGCCTCGAGCTGAGCCAGCTGCCTCTGCACGTCAAATAGGCTaGTCTCCAGGGCCTCCTTCTCCAGGCGCAGGCGAATGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: GGPRAEPAASARQIG*SPGPPSPGAGEWPP
Trigger: AGGAGGCCATTCGCCTGCGCCTGGAGAAGGAGGCCCTGGAGAGCAGCCTATTTGACGTGCAGAGGCAGCTGGCTCAGCTCGAGGCCCGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 90 bp CCCAACAGGCCTCGCTCCCGCGCCCGGAACTCGGCCTCTTGCTCCTaGAGCTTCCTCTGGGAACCCTGGAGCTCCTGTTTCAGGGCTTCC +
Preference number: 5 (lower is better)
Translates to: PNRPRSRARNSASCS*SFLWEPWSSCFRAS
Trigger: GGAAGCCCTGAAACAGGAGCTCCAGGGTTCCCAGAGGAAGCTGCAGGAGCAAGAGGCCGAGTTCCGGGCGCGGGAGCGAGGCCTGTTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACCGGCCTGCTTCAGCCTaGGTTAGCGCCTCGGCCACC +
Preference number: 5 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYRPASA*VSASAT
Trigger: GGTGGCCGAGGCGCTAACCAAGGCTGAAGCAGGCCG...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGAGGGCCTCCCGCTCCTaGGCGCCCTCACTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: RELLTGCQGQTLGAALAQRASRS*APSLRL
Trigger: CAGCCTGAGTGAGGGCGCCAAGGAGCGGGAGGCCCT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTAGGGCCTCCCGCTCCTaGGCGCCCTCACTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSRASRS*APSLRL
Trigger: CAGCCTGAGTGAGGGCGCCAAGGAGCGGGAGGCCCT...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGCGCAGCTCCTTAGCTaGCTGCTGGGTCACCTGCAG +
Preference number: 5 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLAQLLS*LLGHLQ
Trigger: CTGCAGGTGACCCAGCAGCAAGCTAAGGAGCTGCGC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACGCGCAGCTCCTTAGCTaGCTGCTGGGTCACCTGCAG +
Preference number: 5 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDAQLLS*LLGHLQ
Trigger: CTGCAGGTGACCCAGCAGCAAGCTAAGGAGCTGCGC...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAGGGCCTCCCGCTCCTaGGCGCCCTCACTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: LGHQEALPGEARGSTGCSRASRS*APSLRL
Trigger: CAGCCTGAGTGAGGGCGCCAAGGAGCGGGAGGCCCT...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAGCCTTCTGCAGCTGCTaGGCCCTTGAGGCTGCATGG +
Preference number: 5 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLAFCSC*ALEAAW
Trigger: CCATGCAGCCTCAAGGGCCAAGCAGCTGCAGAAGGC...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 90 bp GCTTCCTCTGGGAACCCTGGAGCTCCTGTTTCAGGGCTTCCAGGCTaGTCTCGCCTTTCAGCAACCTCTGCCGTAGGCCCAGGGCCTCTC +
Preference number: 5 (lower is better)
Translates to: ASSGNPGAPVSGLPG*SRLSATSAVGPGPL
Trigger: GAGAGGCCCTGGGCCTACGGCAGAGGTTGCTGAAAGGCGAGAGCAGCCTGGAAGCCCTGAAACAGGAGCTCCAGGGTTCCCAGAGGAAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 90 bp CCGTCCGTTCCTCCAGCTCTTTCACCGTCTGGGCATGGGCGGCAGTaGCTTCCTCCAGCTGGGCCCGGAGGTCTCGAAGTTCAGATGTCA +
Preference number: 5 (lower is better)
Translates to: PSVPPALSPSGHGRQ*LPPAGPGGLEVQMS
Trigger: TGACATCTGAACTTCGAGACCTCCGGGCCCAGCTGGAGGAAGCCACTGCCGCCCATGCCCAGACGGTGAAAGAGCTGGAGGAACGGACGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 90 bp CCGCAGCTCTTGCAGGAAGTCTCGGAGGGCATCACGCACAGCTTCTaGGTCCAAGTCTGGAGGTGCCGGGGAGGCAATGAGCCCTGGAGA +
Preference number: 5 (lower is better)
Translates to: PQLLQEVSEGITHSF*VQVWRCRGGNEPWR
Trigger: TCTCCAGGGCTCATTGCCTCCCCGGCACCTCCAGACTTGGACCCAGAAGCTGTGCGTGATGCCCTCCGAGACTTCCTGCAAGAGCTGCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACAGAGCTGCCTCTGCCTaGCTCTCAGCCCGATGCAGG +
Preference number: 5 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYRAASA*LSARCR
Trigger: CCTGCATCGGGCTGAGAGCAAGGCAGAGGCAGCTCT...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTAACCTGTAGCTGGCGCTaGTGCAGGGCTGAGTGGATC +
Preference number: 5 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLTCSWR*CRAEWI
Trigger: GATCCACTCAGCCCTGCACAAGCGCCAGCTACAGGT...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCACTGCTCAGGAGCTCGTaGGCACTGCGTAGGCGCTGG +
Preference number: 5 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSLLRSS*ALRRRW
Trigger: CCAGCGCCTACGCAGTGCCAACGAGCTCCTGAGCAG...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCTGCTCAGGAGCTCGTaGGCACTGCGTAGGCGCTGG +
Preference number: 5 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSLLRSS*ALRRRW
Trigger: CCAGCGCCTACGCAGTGCCAACGAGCTCCTGAGCAG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGGCGCAGCTCCTTAGCTaGCTGCTGGGTCACCTGCAG +
Preference number: 5 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQAQLLS*LLGHLQ
Trigger: CTGCAGGTGACCCAGCAGCAAGCTAAGGAGCTGCGC...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GACCAGGCCCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACAGCGCGGCAATCTCCTaGCTCAGCTCCTCCTTCTCG +
Preference number: 5 (lower is better)
Translates to: DQALGRLCYKGCLSCPGDSAAIS*LSSSFS
Trigger: CGAGAAGGAGGAGCTGAGCAAGGAGATTGCCGCGCT...GTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGGGCCTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTTCGCTCTCCTCCACCTaGGCCAGTGCCCCACTGAGC +
Preference number: 5 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSSLSST*ASAPLS
Trigger: GCTCAGTGGGGCACTGGCCAAGGTGGAGGAGAGCGA...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCATCGCTCTCCTCCACCTaGGCCAGTGCCCCACTGAGC +
Preference number: 5 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSSLSST*ASAPLS
Trigger: GCTCAGTGGGGCACTGGCCAAGGTGGAGGAGAGCGA...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTCAGGCCGGGAGAGGTaGCTGGCGATGACCTCCCTG +
Preference number: 5 (lower is better)
Translates to: LLTGCQGQTLGAALAQVASGRER*LAMTSL
Trigger: CAGGGAGGTCATCGCCAGCAACCTCTCCCGGCCTGA...GGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS CCA 90 bp TTGCTGGCGATGACCTCCCTGGCGCAGACAAGCAGGCTGGCTCCCTaGAAGTCCTGGACCCGGTTCTGCACACTCAGGCTCTTCTCTTGG +
Preference number: 5 (lower is better)
Translates to: LLAMTSLAQTSRLAP*KSWTRFCTLRLFSW
Trigger: CCAAGAGAAGAGCCTGAGTGTGCAGAACCGGGTCCAGGACTTCCAGGGAGCCAGCCTGCTTGTCTGCGCCAGGGAGGTCATCGCCAGCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR CAA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGAGAGCTGCCTCTGCCTaGCTCTCAGCCCGATGCAGG +
Preference number: 5 (lower is better)
Translates to: RELLTGCQGQTLGAALAQRAASA*LSARCR
Trigger: CCTGCATCGGGCTGAGAGCAAGGCAGAGGCAGCTCT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACACCTGTAGCTGGCGCTaGTGCAGGGCTGAGTGGATC +
Preference number: 5 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYTCSWR*CRAEWI
Trigger: GATCCACTCAGCCCTGCACAAGCGCCAGCTACAGGT...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATGCTACAGCTCTCCAGCCTCCTaGGCTACAGACACTCGAGCC +
Preference number: 5 (lower is better)
Translates to: PSSLTQHSDDQALGRLCYSSPAS*ATDTRA
Trigger: GGCTCGAGTGTCTGTAGCCAAGGAGGCTGGAGAGCT...GTAGCATAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGCATCTCCACCAGCTGTaGGCTCAGGGTGCTGGTCTG +
Preference number: 5 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQHLHQL*AQGAGL
Trigger: CAGACCAGCACCCTGAGCCAACAGCTGGTGGAGATG...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGCCTTCTGCAGCTGCTaGGCCCTTGAGGCTGCATGG +
Preference number: 5 (lower is better)
Translates to: RELLTGCQGQTLGAALAQAFCSC*ALEAAW
Trigger: CCATGCAGCCTCAAGGGCCAAGCAGCTGCAGAAGGC...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTCGCTCTCCTCCACCTaGGCCAGTGCCCCACTGAGC +
Preference number: 5 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSSLSST*ASAPLS
Trigger: GCTCAGTGGGGCACTGGCCAAGGTGGAGGAGAGCGA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 90 bp TGGCTGGACCGGATTGTGGTTCCCCTCCAGGGCTACATCCACCTGTaGCTCCAAATGTTGGATCTGCTGTTGGGCCTCGGCCAGGTCCAG +
Preference number: 5 (lower is better)
Translates to: WLDRIVVPLQGYIHL*LQMLDLLLGLGQVQ
Trigger: CTGGACCTGGCCGAGGCCCAACAGCAGATCCAACATTTGGAGGCACAGGTGGATGTAGCCCTGGAGGGGAACCACAATCCGGTCCAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 90 bp TCAACCTCCTGTTGCAGTTCCAGTTGCTGCTCACCCGCCTCTGGCTaGACCGGATTGTGGTTCCCCTCCAGGGCTACATCCACCTGTGCC +
Preference number: 5 (lower is better)
Translates to: STSCCSSSCCSPASG*TGLWFPSRATSTCA
Trigger: GGCACAGGTGGATGTAGCCCTGGAGGGGAACCACAATCCGGTCCAGCCAGAGGCGGGTGAGCAGCAACTGGAACTGCAACAGGAGGTTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGACCTGTAGCTGGCGCTaGTGCAGGGCTGAGTGGATC +
Preference number: 5 (lower is better)
Translates to: RELLTGCQGQTLGAALAQTCSWR*CRAEWI
Trigger: GATCCACTCAGCCCTGCACAAGCGCCAGCTACAGGT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCTGGGCAGGCTATGCTACAAAGGGTGTCTCTCCTGCCCAGGGGACCTGCTCAGGGAACCCAGCAGTTCTaGGCTGGCTTCATAGCGTCC +
Preference number: 5 (lower is better)
Translates to: PGQAMLQRVSLLPRGPAQGTQQF*AGFIAS
Trigger: GGACGCTATGAAGCCAGCCAAGAACTGCTGGGTTCC...CTGAGCAGGTCCCCTGGGCAGGAGAGACACCCTTTGTAGCATAGCCTGCCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCTGCTCAGGAGCTCGTaGGCACTGCGTAGGCGCTGG +
Preference number: 5 (lower is better)
Translates to: PFWGSLVLLLPETSALPGLLRSS*ALRRRW
Trigger: CCAGCGCCTACGCAGTGCCAACGAGCTCCTGAGCAG...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCGGCCTGCTTCAGCCTaGGTTAGCGCCTCGGCCACC +
Preference number: 5 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVRPASA*VSASAT
Trigger: GGTGGCCGAGGCGCTAACCAAGGCTGAAGCAGGCCG...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAAGCGCGGCAATCTCCTaGCTCAGCTCCTCCTTCTCG +
Preference number: 5 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSSAAIS*LSSSFS
Trigger: CGAGAAGGAGGAGCTGAGCAAGGAGATTGCCGCGCT...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp AGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGAGCGCGGCAATCTCCTaGCTCAGCTCCTCCTTCTCG +
Preference number: 5 (lower is better)
Translates to: RELLTGCQGQTLGAALAQSAAIS*LSSSFS
Trigger: CGAGAAGGAGGAGCTGAGCAAGGAGATTGCCGCGCT...CTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTCATCTCCACCAGCTGTaGGCTCAGGGTGCTGGTCTG +
Preference number: 5 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSHLHQL*AQGAGL
Trigger: CAGACCAGCACCCTGAGCCAACAGCTGGTGGAGATG...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGCCTTCTGCAGCTGCTaGGCCCTTGAGGCTGCATGG +
Preference number: 5 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLAFCSC*ALEAAW
Trigger: CCATGCAGCCTCAAGGGCCAAGCAGCTGCAGAAGGC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGTCGCTCTCCTCCACCTaGGCCAGTGCCCCACTGAGC +
Preference number: 5 (lower is better)
Translates to: QEALPGEARGSTGCSNSESLSST*ASAPLS
Trigger: GCTCAGTGGGGCACTGGCCAAGGTGGAGGAGAGCGA...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CTGGCTGGCTCATGCAGCCTTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGCGTTCAACCTCCTGTaGCAGTTCCAGTTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: LAGSCSLGPSRGSSRRGPAFNLL*QFQLLL
Trigger: GAGCAGCAACTGGAACTGCAACAGGAGGTTGAACGC...CGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAAGGCTGCATGAGCCAGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 90 bp CTGGGCTCCTGTGCCTCCAGCTCCCCAGTTTCCAGCCGCACAGCCTaGTCCAGCCTCTCATTGACAGCATTGTACTTGATGGCCAGCTCA +
Preference number: 5 (lower is better)
Translates to: LGSCASSSPVSSRTA*SSLSLTALYLMASS
Trigger: TGAGCTGGCCATCAAGTACAATGCTGTCAATGAGAGGCTGGAGCAGGCTGTGCGGCTGGAAACTGGGGAGCTGGAGGCACAGGAGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR CAA 90 bp TGCCACCCCAGCTCCCTCACACAGCACTCTGATGACCAGGCCCTGGGCAGGCTATTGACAGCATTGTACTaGATGGCCAGCTCATCCCGC +
Preference number: 5 (lower is better)
Translates to: CHPSSLTQHSDDQALGRLLTALY*MASSSR
Trigger: GCGGGATGAGCTGGCCATCAAGTACAATGCTGTCAA...TAGCCTGCCCAGGGCCTGGTCATCAGAGTGCTGTGTGAGGGAGCTGGGGTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTACCTGTAGCTGGCGCTaGTGCAGGGCTGAGTGGATC +
Preference number: 5 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSTCSWR*CRAEWI
Trigger: GATCCACTCAGCCCTGCACAAGCGCCAGCTACAGGT...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGGAACCCAGCAGTTCTaGGCTGGCTTCATAGCGTCC +
Preference number: 5 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSGTQQF*AGFIAS
Trigger: GGACGCTATGAAGCCAGCCAAGAACTGCTGGGTTCC...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTGCTCAGGAGCTCGTaGGCACTGCGTAGGCGCTGG +
Preference number: 5 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVLLRSS*ALRRRW
Trigger: CCAGCGCCTACGCAGTGCCAACGAGCTCCTGAGCAG...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCGGCCTGCTTCAGCCTaGGTTAGCGCCTCGGCCACC +
Preference number: 5 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSRPASA*VSASAT
Trigger: GGTGGCCGAGGCGCTAACCAAGGCTGAAGCAGGCCG...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp TTGGGCCATCAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAGCTCTCCAGCCTCCTaGGCTACAGACACTCGAGCC +
Preference number: 5 (lower is better)
Translates to: LGHQEALPGEARGSTGCSSSPAS*ATDTRA
Trigger: GGCTCGAGTGTCTGTAGCCAAGGAGGCTGGAGAGCT...GCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTGATGGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTAGCTCTCCAGCCTCCTaGGCTACAGACACTCGAGCC +
Preference number: 5 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSSSPAS*ATDTRA
Trigger: GGCTCGAGTGTCTGTAGCCAAGGAGGCTGGAGAGCT...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 90 bp GCGCAGACAAGCAGGCTGGCTCCCTGGAAGTCCTGGACCCGGTTCTaGACACTCAGGCTCTTCTCTTGGTTTGGTCCCAGAACACAGTTC +
Preference number: 5 (lower is better)
Translates to: AQTSRLAPWKSWTRF*TLRLFSWFGPRTQF
Trigger: GAACTGTGTTCTGGGACCAAACCAAGAGAAGAGCCTGAGTGTGCAGAACCGGGTCCAGGACTTCCAGGGAGCCAGCCTGCTTGTCTGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS GCA 90 bp GCGCTGTCCAGGTCCTGGCTGTGTTCTGTGTCCCTCAGTCGCTGCTaGTCCAGTTCAGTAGACCTGTCCATCAGCTGCTTCTCCAGCTCT +
Preference number: 5 (lower is better)
Translates to: ALSRSWLCSVSLSRC*SSSVDLSISCFSSS
Trigger: AGAGCTGGAGAAGCAGCTGATGGACAGGTCTACTGAACTGGAGCAGCAGCGACTGAGGGACACAGAACACAGCCAGGACCTGGACAGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS GCA 90 bp AGAGCGCTGTCCAGGTCCTGGCTGTGTTCTGTGTCCCTCAGTCGCTaGTGCTCCAGTTCAGTAGACCTGTCCATCAGCTGCTTCTCCAGC +
Preference number: 5 (lower is better)
Translates to: RALSRSWLCSVSLSR*CSSSVDLSISCFSS
Trigger: GCTGGAGAAGCAGCTGATGGACAGGTCTACTGAACTGGAGCAGCAGCGACTGAGGGACACAGAACACAGCCAGGACCTGGACAGCGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR CAA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGCACTGAGATCAGCCTaGTCCAGGTCACTCTGCACC +
Preference number: 5 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLALRSA*SRSLCT
Trigger: GGTGCAGAGTGACCTGGACAAGGCTGATCTCAGTGC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTGCACTGAGATCAGCCTaGTCCAGGTCACTCTGCACC +
Preference number: 5 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPALRSA*SRSLCT
Trigger: GGTGCAGAGTGACCTGGACAAGGCTGATCTCAGTGC...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp ACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGAACCCAGCAGTTCTaGGCTGGCTTCATAGCGTCC +
Preference number: 5 (lower is better)
Translates to: TGCQGQTLGAALAQVAFLGTQQF*AGFIAS
Trigger: GGACGCTATGAAGCCAGCCAAGAACTGCTGGGTTCC...CAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCATCTCCACCAGCTGTaGGCTCAGGGTGCTGGTCTG +
Preference number: 5 (lower is better)
Translates to: PFWGSLVLLLPETSALPGHLHQL*AQGAGL
Trigger: CAGACCAGCACCCTGAGCCAACAGCTGGTGGAGATG...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCTTCTGCAGCTGCTaGGCCCTTGAGGCTGCATGG +
Preference number: 5 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLAFCSC*ALEAAW
Trigger: CCATGCAGCCTCAAGGGCCAAGCAGCTGCAGAAGGC...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS TCA 90 bp GGCCTCCAGCTTGTCAGAGAGGGTCCTGTTGACCTGGTCCTTCTCTaGGTTCTGATTCTGAAGGTGCTCCACGGACAGGGCCAGCTCTGT +
Preference number: 5 (lower is better)
Translates to: GLQLVREGPVDLVLL*VLILKVLHGQGQLC
Trigger: ACAGAGCTGGCCCTGTCCGTGGAGCACCTTCAGAATCAGAACTCAGAGAAGGACCAGGTCAACAGGACCCTCTCTGACAAGCTGGAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCGGAACCCAGCAGTTCTaGGCTGGCTTCATAGCGTCC +
Preference number: 5 (lower is better)
Translates to: PFWGSLVLLLPETSALPGGTQQF*AGFIAS
Trigger: GGACGCTATGAAGCCAGCCAAGAACTGCTGGGTTCC...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp TCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCCCCTTGGGTCATCAGCTCCTaGTCCAAGGCTGCCTTCTCT +
Preference number: 5 (lower is better)
Translates to: SGEALFCCCQKQVLSLAPWVISS*SKAAFS
Trigger: AGAGAAGGCAGCCTTGGACAAGGAGCTGATGACCCA...AGGGGCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGAGCGCGGCAATCTCCTaGCTCAGCTCCTCCTTCTCG +
Preference number: 5 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLSAAIS*LSSSFS
Trigger: CGAGAAGGAGGAGCTGAGCAAGGAGATTGCCGCGCT...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp AGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGCATCTCCACCAGCTGTaGGCTCAGGGTGCTGGTCTG +
Preference number: 5 (lower is better)
Translates to: SLSGEALFCCCQKQVLSLHLHQL*AQGAGL
Trigger: CAGACCAGCACCCTGAGCCAACAGCTGGTGGAGATG...CAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTTTGACAGCATTGTACTaGATGGCCAGCTCATCCCGC +
Preference number: 5 (lower is better)
Translates to: DRMSRTDAGGCSGSGSLSLTALY*MASSSR
Trigger: GCGGGATGAGCTGGCCATCAAGTACAATGCTGTCAA...AGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGGCACTGAGATCAGCCTaGTCCAGGTCACTCTGCACC +
Preference number: 5 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVALRSA*SRSLCT
Trigger: GGTGCAGAGTGACCTGGACAAGGCTGATCTCAGTGC...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCTGGGTCATCAGCTCCTaGTCCAAGGCTGCCTTCTCT +
Preference number: 5 (lower is better)
Translates to: PFWGSLVLLLPETSALPGWVISS*SKAAFS
Trigger: AGAGAAGGCAGCCTTGGACAAGGAGCTGATGACCCA...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGTGGGTCATCAGCTCCTaGTCCAAGGCTGCCTTCTCT +
Preference number: 5 (lower is better)
Translates to: QEALPGEARGSTGCSNSEWVISS*SKAAFS
Trigger: AGAGAAGGCAGCCTTGGACAAGGAGCTGATGACCCA...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAAGAGGCTCTTCCAGGAGAGGCCCGGGGTAGTACAGGTTGTAGCAACTCTGAGGCGTTCAACCTCCTGTaGCAGTTCCAGTTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: QEALPGEARGSTGCSNSEAFNLL*QFQLLL
Trigger: GAGCAGCAACTGGAACTGCAACAGGAGGTTGAACGC...CTCAGAGTTGCTACAACCTGTACTACCCCGGGCCTCTCCTGGAAGAGCCTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GAGGGAGCTTCTGACAGGATGTCAAGGACAGACGCTGGGGGCTGCTCTGGCTCAACTCAGGCTCTTCTCTaGGTTTGGTCCCAGAACACA +
Preference number: 5 (lower is better)
Translates to: EGASDRMSRTDAGGCSGSTQALL*VWSQNT
Trigger: TGTGTTCTGGGACCAAACCAAGAGAAGAGCCTGAGT...TGAGCCAGAGCAGCCCCCAGCGTCTGTCCTTGACATCCTGTCAGAAGCTCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR CAA 90 bp CAGACGCTGGGGGCTGCTCTGGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTTCTGAGCACTGCTTCTaGTACTGCAGAATCTTGGCC +
Preference number: 5 (lower is better)
Translates to: QTLGAALAQVAFLGKPCSSEHCF*YCRILA
Trigger: GGCCAAGATTCTGCAGTACAAGAAGCAGTGCTCAGA...AGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCCAGAGCAGCCCCCAGCGTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS-3UTR CAA 90 bp CCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTCCCTGGCTTGACAGCATTGTACTaGATGGCCAGCTCATCCCGC +
Preference number: 5 (lower is better)
Translates to: PFWGSLVLLLPETSALPGLTALY*MASSSR
Trigger: GCGGGATGAGCTGGCCATCAAGTACAATGCTGTCAA...GCCAGGGAGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTGCACTGAGATCAGCCTaGTCCAGGTCACTCTGCACC +
Preference number: 5 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSALRSA*SRSLCT
Trigger: GGTGCAGAGTGACCTGGACAAGGCTGATCTCAGTGC...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp GGCTCAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGGCGTTCAACCTCCTGTaGCAGTTCCAGTTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: GSGSLSGEALFCCCQKQVAFNLL*QFQLLL
Trigger: GAGCAGCAACTGGAACTGCAACAGGAGGTTGAACGC...CACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS-3UTR CAA 90 bp CAGGTAGCCTTTCTGGGGAAGCCTTGTTCTGCTGCTGCCAGAAACAAGTGCTCTGCGTTCAACCTCCTGTaGCAGTTCCAGTTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: QVAFLGKPCSAAARNKCSAFNLL*QFQLLL
Trigger: GAGCAGCAACTGGAACTGCAACAGGAGGTTGAACGC...AGAGCACTTGTTTCTGGCAGCAGCAGAACAAGGCTTCCCCAGAAAGGCTACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp TGGGCCTCCCGGTCCCCCAGGCCGAGGCGGCTGCGCTaGAGCTCGCCCTCAAGAGCGCGCCGCTGCAGCTCC +
Preference number: 6 (lower is better)
Translates to: WASRSPRPRRLR*SSPSRARRCSS
Trigger: GGAGCTGCAGCGGCGCGCTCTTGAGGGCGAGCTGCAGCGCAGCCGCCTCGGCCTGGGGGACCGGGAGGCCCA
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 72 bp CGATGCAGGCTGGCACTCAGTCCGAGGCCCAGCTCCTaGACAGCCCGGGATGTGCGGACGAGCTCCCCGCCC +
Preference number: 6 (lower is better)
Translates to: RCRLALSPRPSS*TARDVRTSSPP
Trigger: GGGCGGGGAGCTCGTCCGCACATCCCGGGCTGTCCAGGAGCTGGGCCTCGGACTGAGTGCCAGCCTGCATCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp GGCCATAGCCTCCTTCTCCCGGGCAGCGCGCTCCAGTaGTTCCACCTGCCGCTGGGACTCCCGCAGGGCTTG +
Preference number: 6 (lower is better)
Translates to: GHSLLLPGSALQ*FHLPLGLPQGL
Trigger: CAAGCCCTGCGGGAGTCCCAGCGGCAGGTGGAAGCACTGGAGCGCGCTGCCCGGGAGAAGGAGGCTATGGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp GGTCCGGCCCTCCCGCTCTGCTGCTGCCAGCTTCACTaGCAGGCCAGCCCGCTCCTTGGCCATAGCCTCCTT +
Preference number: 6 (lower is better)
Translates to: GPALPLCCCQLH*QASPLLGHSLL
Trigger: AAGGAGGCTATGGCCAAGGAGCGGGCTGGCCTGGCAGTGAAGCTGGCAGCAGCAGAGCGGGAGGGCCGGACC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp TTCTGGACGGAGCGCAGAGCCATGGCCTCCCCTTCCTaGCGCTGTCGCAGCGCCTGCTGCAGCTGCTGCAGC +
Preference number: 6 (lower is better)
Translates to: FWTERRAMASPS*RCRSACCSCCS
Trigger: GCTGCAGCAGCTGCAGCAGGCGCTGCGACAGCGGCAGGAAGGGGAGGCCATGGCTCTGCGCTCCGTCCAGAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 72 bp CGCTCCTGCAACAGGCGCCGCTCCTCCTGCAGCTTCTaGACGGAGCGCAGAGCCATGGCCTCCCCTTCCTGC +
Preference number: 6 (lower is better)
Translates to: RSCNRRRSSCSF*TERRAMASPSC
Trigger: GCAGGAAGGGGAGGCCATGGCTCTGCGCTCCGTCCAGAAGCTGCAGGAGGAGCGGCGCCTGTTGCAGGAGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp GTCCTCCAACACACGCAGCTGAGTCCTCAGCTCTTCTaGCTCCCGCATGCAGGCCTCCCGCTGCCGGCCCAG +
Preference number: 6 (lower is better)
Translates to: VLQHTQLSPQLF*LPHAGLPLPAQ
Trigger: CTGGGCCGGCAGCGGGAGGCCTGCATGCGGGAGGCAGAAGAGCTGAGGACTCAGCTGCGTGTGTTGGAGGAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp TCAGCAACCTCTGCCGTAGGCCCAGGGCCTCTCGCCTaGTCTCCTTCTCCGTCCGCTCACCCAGGGCCAAGC +
Preference number: 6 (lower is better)
Translates to: SATSAVGPGPLA*SPSPSAHPGPS
Trigger: GCTTGGCCCTGGGTGAGCGGACGGAGAAGGAGAGCAGGCGAGAGGCCCTGGGCCTACGGCAGAGGTTGCTGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp ACAGCCCGGGATGTGCGGACGAGCTCCCCGCCCAGCTaGAACAAGTCCCTCTCCGTGCCCATCTTCACCTCG +
Preference number: 6 (lower is better)
Translates to: TARDVRTSSPPS*NKSLSVPIFTS
Trigger: CGAGGTGAAGATGGGCACGGAGAGGGACTTGTTGCAGCTGGGCGGGGAGCTCGTCCGCACATCCCGGGCTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 72 bp AGGTTCCCCGTCCGTTCCTCCAGCTCTTTCACCGTCTaGGCATGGGCGGCAGTGGCTTCCTCCAGCTGGGCC +
Preference number: 6 (lower is better)
Translates to: RFPVRSSSSFTV*AWAAVASSSWA
Trigger: GGCCCAGCTGGAGGAAGCCACTGCCGCCCATGCCCAGACGGTGAAAGAGCTGGAGGAACGGACGGGGAACCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CAA 72 bp GCCCTCACTCAGGCTGCGCCGCAGCTCACTAGCCTCTaGGCGATGGGCTTCGGAGCTGTCCTGACTGTCCCG +
Preference number: 6 (lower is better)
Translates to: ALTQAAPQLTSL*AMGFGAVLTVP
Trigger: CGGGACAGTCAGGACAGCTCCGAAGCCCATCGCCAAGAGGCTAGTGAGCTGCGGCGCAGCCTGAGTGAGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp CTGGCGCTGCTCTGGGTCAGGGCATCTGTCAAGCTCTaGACCTTGCTCCGCAGGTTCCCCTCGCTCTCCTCC +
Preference number: 6 (lower is better)
Translates to: LALLWVRASVKL*TLLRRFPSLSS
Trigger: GGAGGAGAGCGAGGGGAACCTGCGGAGCAAGGTGCAGAGCTTGACAGATGCCCTGACCCAGAGCAGCGCCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp GGGTGCCAGGGGGTAGGGAGACGGATGCCGAGCTCCTaGGAAGCTCCTGGTGTAGCTGTGCCTTCAGTGTGG +
Preference number: 6 (lower is better)
Translates to: GCQGVGRRMPSS*EAPGVAVPSVW
Trigger: CCACACTGAAGGCACAGCTACACCAGGAGCTTCGCAGGAGCTCGGCATCCGTCTCCCTACCCCCTGGCACCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 72 bp CGCTCCCGTGCCTCCAGTGTGCGCTCCGTCTGTACCTaGGCACTGCGCAGGCGTTCAACCTCCTGTTGCAGT +
Preference number: 6 (lower is better)
Translates to: RSRASSVRSVCT*ALRRRSTSCCS
Trigger: ACTGCAACAGGAGGTTGAACGCCTGCGCAGTGCCCAGGTACAGACGGAGCGCACACTGGAGGCACGGGAGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp GCCACCTCTGCCTTCTCCGTCTGCAGTACATCCCTCTaGAGTATGGCGCAGCTCAGTGCCTCCCGCACCTCC +
Preference number: 6 (lower is better)
Translates to: ATSAFSVCSTSL*SMAQLSASRTS
Trigger: GGAGGTGCGGGAGGCACTGAGCTGCGCCATACTGCAGAGGGATGTACTGCAGACGGAGAAGGCAGAGGTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp CGAGCTGAGCCAGCTGCCTCTGCACGTCAAATAGGCTaGTCTCCAGGGCCTCCTTCTCCAGGCGCAGGCGAA +
Preference number: 6 (lower is better)
Translates to: RAEPAASARQIG*SPGPPSPGAGE
Trigger: TTCGCCTGCGCCTGGAGAAGGAGGCCCTGGAGAGCAGCCTATTTGACGTGCAGAGGCAGCTGGCTCAGCTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CAA 90 bp TACCTGGGCACTGCGCAGGCGTTCAACCTCCTGTTGCAGTTCCAGTaGCTGCTCACCCGCCTCTGGCTGGACCGGATTGTGGTTCCCCTC +
Preference number: 6 (lower is better)
Translates to: YLGTAQAFNLLLQFQ*LLTRLWLDRIVVPL
Trigger: GAGGGGAACCACAATCCGGTCCAGCCAGAGGCGGGTGAGCAGCAACTGGAACTGCAACAGGAGGTTGAACGCCTGCGCAGTGCCCAGGTA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp GGGAACCCTGGAGCTCCTGTTTCAGGGCTTCCAGGCTaGTCTCGCCTTTCAGCAACCTCTGCCGTAGGCCCA +
Preference number: 6 (lower is better)
Translates to: GNPGAPVSGLPG*SRLSATSAVGP
Trigger: TGGGCCTACGGCAGAGGTTGCTGAAAGGCGAGAGCAGCCTGGAAGCCCTGAAACAGGAGCTCCAGGGTTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp AGCTCCTGTGAGTGTGCGGTCCAGGCGGCCCCTCTCTaGATTCAAGCGCAGGGTGTCCTCATGGCTTCGAAG +
Preference number: 6 (lower is better)
Translates to: SSCECAVQAAPL*IQAQGVLMASK
Trigger: CTTCGAAGCCATGAGGACACCCTGCGCTTGAATGCAGAGAGGGGCCGCCTGGACCGCACACTCACAGGAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp CTGCGCAGGCGTTCAACCTCCTGTTGCAGTTCCAGTTaGTGCTCACCCGCCTCTGGCTGGACCGGATTGTGG +
Preference number: 6 (lower is better)
Translates to: LRRRSTSCCSSS*CSPASGWTGLW
Trigger: CCACAATCCGGTCCAGCCAGAGGCGGGTGAGCAGCAACTGGAACTGCAACAGGAGGTTGAACGCCTGCGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 72 bp CTGGCGCAGACAAGCAGGCTGGCTCCCTGGAAGTCCTaGACCCGGTTCTGCACACTCAGGCTCTTCTCTTGG +
Preference number: 6 (lower is better)
Translates to: LAQTSRLAPWKS*TRFCTLRLFSW
Trigger: CCAAGAGAAGAGCCTGAGTGTGCAGAACCGGGTCCAGGACTTCCAGGGAGCCAGCCTGCTTGTCTGCGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS CAA 72 bp CTGTACCTGGGCACTGCGCAGGCGTTCAACCTCCTGTaGCAGTTCCAGTTGCTGCTCACCCGCCTCTGGCTG +
Preference number: 6 (lower is better)
Translates to: LYLGTAQAFNLL*QFQLLLTRLWL
Trigger: CAGCCAGAGGCGGGTGAGCAGCAACTGGAACTGCAACAGGAGGTTGAACGCCTGCGCAGTGCCCAGGTACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS TCA 72 bp TGCCGTCAGAGGTGTCCGCAGTGCGCTCTGAGCTGCTaGGCTGCACACCACTCTCAGTGTCAGATAGGGCAG +
Preference number: 6 (lower is better)
Translates to: CRQRCPQCALSC*AAHHSQCQIGQ
Trigger: CTGCCCTATCTGACACTGAGAGTGGTGTGCAGCTCAGCAGCTCAGAGCGCACTGCGGACACCTCTGACGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp GCAGCAGCTTTTGCTTCTCCAGAGCTGCCTCTGCCTTaGTCTCAGCCCGATGCAGGCTGGCACTCAGTCCGA +
Preference number: 6 (lower is better)
Translates to: AAAFASPELPLP*SQPDAGWHSVR
Trigger: TCGGACTGAGTGCCAGCCTGCATCGGGCTGAGAGCAAGGCAGAGGCAGCTCTGGAGAAGCAAAAGCTGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp TGCTTCTCCACGGCCATCGTAGTGGCATGTTCTGCCTaGTGCTGGCGGCCCAGGAGTGCCACCTTTTCTTCC +
Preference number: 6 (lower is better)
Translates to: CFSTAIVVACSA*CWRPRSATFSS
Trigger: GGAAGAAAAGGTGGCACTCCTGGGCCGCCAGCAGCAGGCAGAACATGCCACTACGATGGCCGTGGAGAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp TTCCTGCTTCTCCACGGCCATCGTAGTGGCATGTTCTaGCTGCTGCTGGCGGCCCAGGAGTGCCACCTTTTC +
Preference number: 6 (lower is better)
Translates to: FLLLHGHRSGMF*LLLAAQECHLF
Trigger: GAAAAGGTGGCACTCCTGGGCCGCCAGCAGCAGGCAGAACATGCCACTACGATGGCCGTGGAGAAGCAGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS GCA 72 bp GTGCCTCCAGTGTGCGCTCCGTCTGTACCTGGGCACTaGGCAGGCGTTCAACCTCCTGTTGCAGTTCCAGTT +
Preference number: 6 (lower is better)
Translates to: VPPVCAPSVPGH*AGVQPPVAVPV
Trigger: AACTGGAACTGCAACAGGAGGTTGAACGCCTGCGCAGTGCCCAGGTACAGACGGAGCGCACACTGGAGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CAA 72 bp AGCCGCACAGCCTGCTCCAGCCTCTCATTGACAGCATaGTACTTGATGGCCAGCTCATCCCGCTCTGCGCGG +
Preference number: 6 (lower is better)
Translates to: SRTACSSLSLTA*YLMASSSRSAR
Trigger: CCGCGCAGAGCGGGATGAGCTGGCCATCAAGTACAATGCTGTCAATGAGAGGCTGGAGCAGGCTGTGCGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS CAA 72 bp CAGCCGCACAGCCTGCTCCAGCTCTCATTGACAGCATaGTACTTGATGGCCAGCTCATCCCGCTCTGCGCGG +
Preference number: 6 (lower is better)
Translates to: QPHSLLQLSLTA*YLMASSSRSAR
Trigger: CCGCGCAGAGCGGGATGAGCTGGCCATCAAGTACAATGCTGTCAATGAGAGCTGGAGCAGGCTGTGCGGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144196.2
CDS CAA 72 bp ACAGCCTGCTCCAGCCTCTCATTGACAGCATTGTACTaGATGGCCAGCTCATCCCGCTCTGCGCGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: TACSSLSLTALY*MASSSRSARLW
Trigger: CCAGAGCCGCGCAGAGCGGGATGAGCTGGCCATCAAGTACAATGCTGTCAATGAGAGGCTGGAGCAGGCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS CAA 72 bp CACAGCCTGCTCCAGCTCTCATTGACAGCATTGTACTaGATGGCCAGCTCATCCCGCTCTGCGCGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: HSLLQLSLTALY*MASSSRSARLW
Trigger: CCAGAGCCGCGCAGAGCGGGATGAGCTGGCCATCAAGTACAATGCTGTCAATGAGAGCTGGAGCAGGCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000144196.2
CDS GCA 72 bp TCCAGGTCCTGGCTGTGTTCTGTGTCCCTCAGTCGCTaGTGCTCCAGTTCAGTAGACCTGTCCATCAGCTGC +
Preference number: 6 (lower is better)
Translates to: SRSWLCSVSLSR*CSSSVDLSISC
Trigger: GCAGCTGATGGACAGGTCTACTGAACTGGAGCAGCAGCGACTGAGGGACACAGAACACAGCCAGGACCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS GCA 72 bp TGTGCCTCCAGCTCCCCAGTTTCCAGCCGCACAGCCTaGTCCAGCCTCTCATTGACAGCATTGTACTTGATG +
Preference number: 6 (lower is better)
Translates to: CASSSPVSSRTA*SSLSLTALYLM
Trigger: CATCAAGTACAATGCTGTCAATGAGAGGCTGGAGCAGGCTGTGCGGCTGGAAACTGGGGAGCTGGAGGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS GCA 72 bp AGGTCCTGGCTGTGTTCTGTGTCCCTCAGTCGCTGCTaGTCCAGTTCAGTAGACCTGTCCATCAGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: RSWLCSVSLSRC*SSSVDLSISCF
Trigger: GAAGCAGCTGATGGACAGGTCTACTGAACTGGAGCAGCAGCGACTGAGGGACACAGAACACAGCCAGGACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS CCA 72 bp TGGCGGCCCAGGAGTGCCACCTTTTCTTCCTCTAGCTaGGCGATAAGGCGGTTTAATTCCAGCTTGTCCTGG +
Preference number: 6 (lower is better)
Translates to: WRPRSATFSSSS*AIRRFNSSLSW
Trigger: CCAGGACAAGCTGGAATTAAACCGCCTTATCGCCCAGCTAGAGGAAGAAAAGGTGGCACTCCTGGGCCGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CAA 72 bp CTGTGTTCTGTGTCCCTCTCATTGACAGCATTGTACTaGATGGCCAGCTCATCCCGCTCTGCGCGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: LCSVSLSLTALY*MASSSRSARLW
Trigger: CCAGAGCCGCGCAGAGCGGGATGAGCTGGCCATCAAGTACAATGCTGTCAATGAGAGGGACACAGAACACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000168157.8
CDS TCA 72 bp CTTGTCAGAGAGGGTCCTGTTGACCTGGTCCTTCTCTaGGTTCTGATTCTGAAGGTGCTCCACGGACAGGGC +
Preference number: 6 (lower is better)
Translates to: LVREGPVDLVLL*VLILKVLHGQG
Trigger: GCCCTGTCCGTGGAGCACCTTCAGAATCAGAACTCAGAGAAGGACCAGGTCAACAGGACCCTCTCTGACAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CCA 72 bp TCCTGGACCCGGTTCTGCACACTCAGGCTCTTCTCTTaGTTTGGTCCCAGAACACAGTTCTCCAGAGACTGG +
Preference number: 6 (lower is better)
Translates to: SWTRFCTLRLFS*FGPRTQFSRDW
Trigger: CCAGTCTCTGGAGAACTGTGTTCTGGGACCAAACCAAGAGAAGAGCCTGAGTGTGCAGAACCGGGTCCAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS CAA 72 bp GTCCTGGACCCGGTTCTGCACACTCAGGCTCTTCTCTaGGTTTGGTCCCAGAACACAGTTCTCCAGAGACTG +
Preference number: 6 (lower is better)
Translates to: VLDPVLHTQALL*VWSQNTVLQRL
Trigger: CAGTCTCTGGAGAACTGTGTTCTGGGACCAAACCAAGAGAAGAGCCTGAGTGTGCAGAACCGGGTCCAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS TCA 72 bp ACTCCAGGGCCTCCAGCTTGTCAGAGAGGGTCCTGTTaGCCTGGTCCTTCTCTGAGTTCTGATTCTGAAGGT +
Preference number: 6 (lower is better)
Translates to: TPGPPACQRGSC*PGPSLSSDSEG
Trigger: ACCTTCAGAATCAGAACTCAGAGAAGGACCAGGTCAACAGGACCCTCTCTGACAAGCTGGAGGCCCTGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8
CDS CAA 72 bp GGACCCGGTTCTGCACACTCAGGCTCTTCTCTTGGTTaGGTCCCAGAACACAGTTCTCCAGAGACTGGATCA +
Preference number: 6 (lower is better)
Translates to: GPGSAHSGSSLG*VPEHSSPETGS
Trigger: TGATCCAGTCTCTGGAGAACTGTGTTCTGGGACCAAACCAAGAGAAGAGCCTGAGTGTGCAGAACCGGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102491.10
CDS CAA 90 bp ACCTTTTCTTCCTCTAGCTGGGCGATAAGGCGGTTTAATTCCAGCTaGTCCTGGGCGAGGCTCTCATTCAGGGCACTCATCTTGGATAAG +
Preference number: 6 (lower is better)
Translates to: TFSSSSWAIRRFNSS*SWARLSFRALILDK
Trigger: CTTATCCAAGATGAGTGCCCTGAATGAGAGCCTCGCCCAGGACAAGCTGGAATTAAACCGCCTTATCGCCCAGCTAGAGGAAGAAAAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000040222.14
ENSMUST00000097816.9
ENSMUST00000102491.10
ENSMUST00000168157.8