Pregenerated sensors for CRLS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027357Ensembl transcript IDs: ENSMUST00000028835.13, ENSMUST00000110122.10, ENSMUST00000124834.8, ENSMUST00000124836.8, ENSMUST00000154160.2
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAAGATCAGGAAAGTCCTGTAGCTTTCGCTGGCGCTGCTGCCGATaGCGAAGTTGCTTCCTTGCTGCTGGATCTGGGTGCTTCTCATTT | + |
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Preference number: 1 (lower is better) Translates to: PRSGKSCSFRWRCCR*RSCFLAAGSGCFSF Trigger: AAATGAGAAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGCCAGCGAAAGCTACAGGACTTTCCTGATCTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR CCA 90 bp | CTGGCGCTGCTGCCGATGACGAAGTTGCTTCCTTGCTGCTGGATCTaGGTGCTTCTCATTTGCCCTTTATCACCTGAACAGTTTTCCGAC | + |
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Preference number: 1 (lower is better) Translates to: LALLPMTKLLPCCWI*VLLICPLSPEQFSD Trigger: GTCGGAAAACTGTTCAGGTGATAAAGGGCAAATGAGAAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR GCA 90 bp | ATGACGAAGTTGCTTCCTTGCTGCTGGATCTGGGTGCTTCTCATTTaGCCTTTATCACCTGAACAGTTTTCCGACCATAGTGATAATAAC | + |
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Preference number: 1 (lower is better) Translates to: MTKLLPCCWIWVLLI*PLSPEQFSDHSDNN Trigger: GTTATTATCACTATGGTCGGAAAACTGTTCAGGTGATAAAGGGCAAATGAGAAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR TCA 90 bp | ACTCCTGCGTTATCTGTTATCCTGATACATAAACTATTTGGTACCTaGGAGGCTGGAAGACTACTCGTGAACTTCAATGCCTTCTGTTTT | + |
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Preference number: 1 (lower is better) Translates to: TPALSVILIHKLFGT*EAGRLLVNFNAFCF Trigger: AAAACAGAAGGCATTGAAGTTCACGAGTAGTCTTCCAGCCTCTCAGGTACCAAATAGTTTATGTATCAGGATAACAGATAACGCAGGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| 3UTR TCA 90 bp | CTGTGCAACACCATAGTATCTGAAGATAAATGCTGTCAGCATAATTaGAAACTGGAGCTGCCAAAGAAGCTGCCACCAAAATTAACTGGA | + |
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Preference number: 1 (lower is better) Translates to: LCNTIVSEDKCCQHN*KLELPKKLPPKLTG Trigger: TCCAGTTAATTTTGGTGGCAGCTTCTTTGGCAGCTCCAGTTTTCAATTATGCTGACAGCATTTATCTTCAGATACTATGGTGTTGCACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR-3UTR GCA 90 bp | TACAAACAGGGAGAAGGCATGATGTCATGCTTTGCCTGTAAGATGCAAAGCGTAAAGTTGCTTCCTTGCTaGTGGATCTGGGTGCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: YKQGEGMMSCFACKMQSVKLLPC*WIWVLL Trigger: GAGAAGCACCCAGATCCAGCAGCAAGGAAGCAACTT...TACGCTTTGCATCTTACAGGCAAAGCATGACATCATGCCTTCTCCCTGTTTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR-3UTR TCA 90 bp | CAGGGAGAAGGCATGATGTCATGCTTTGCCTGTAAGATGCAAAGCGTAATACATGCAGAGTTCGGTATCTaGCATAAAACACAGCAGCGA | + |
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Preference number: 2 (lower is better) Translates to: QGEGMMSCFACKMQSVIHAEFGI*HKTQQR Trigger: TCGCTGCTGTGTTTTATGTCAGATACCGAACTCTGC...ATGTATTACGCTTTGCATCTTACAGGCAAAGCATGACATCATGCCTTCTCCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR-3UTR TCA 90 bp | TATCAAACATCCCATTACAAACAGGGAGAAGGCATGATGTCATGCTTTGCCTGTTTCTGTATAGGCCCATaGTCGAGCTTATTTTCGCCG | + |
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Preference number: 2 (lower is better) Translates to: YQTSHYKQGEGMMSCFACFCIGP*SSLFSP Trigger: CGGCGAAAATAAGCTCGATCATGGGCCTATACAGAA...ACAGGCAAAGCATGACATCATGCCTTCTCCCTGTTTGTAATGGGATGTTTGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| 3UTR-3UTR TCA 90 bp | CCTTGCTGCTGGATCTGGGTGCTTCTCATTTGCCCTTTATCACCTGAACAGTTTATAATAACTGTATGCTaGTGCAGCTGTAGTGAATGC | + |
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Preference number: 2 (lower is better) Translates to: PCCWIWVLLICPLSPEQFIITVC*CSCSEC Trigger: GCATTCACTACAGCTGCATCAGCATACAGTTATTAT...AAACTGTTCAGGTGATAAAGGGCAAATGAGAAGCACCCAGATCCAGCAGCAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR-3UTR GCA 90 bp | AATACACTGGAAATTCTGTATAGGCCCATGATCGAGCTTATTTTCGCCGTACATACGAAGTTGCTTCCTTaGTGCTGGATCTGGGTGCTT | + |
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Preference number: 2 (lower is better) Translates to: NTLEILYRPMIELIFAVHTKLLP*CWIWVL Trigger: AAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGT...ATGTACGGCGAAAATAAGCTCGATCATGGGCCTATACAGAATTTCCAGTGTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 ENSMUST00000124836.8 |
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| 3UTR-3UTR GCA 90 bp | CAAACATCCCATTACAAACAGGGAGAAGGCATGATGTCATGCTTTGCCTGTAAGTCTCCCTCTGACTCCTaGGTTATCTGTTATCCTGAT | + |
|
Preference number: 2 (lower is better) Translates to: QTSHYKQGEGMMSCFACKSPSDS*VICYPD Trigger: ATCAGGATAACAGATAACGCAGGAGTCAGAGGGAGA...CTTACAGGCAAAGCATGACATCATGCCTTCTCCCTGTTTGTAATGGGATGTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| 3UTR-3UTR GCA 90 bp | ATTTTCGCCGTACATTTCTTCAGTTTTGAAGACATGGTTTGTCTGACAAGACCTACGAAGTTGCTTCCTTaGTGCTGGATCTGGGTGCTT | + |
|
Preference number: 2 (lower is better) Translates to: IFAVHFFSFEDMVCLTRPTKLLP*CWIWVL Trigger: AAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGT...AGGTCTTGTCAGACAAACCATGTCTTCAAAACTGAAGAAATGTACGGCGAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 ENSMUST00000124836.8 |
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| 3UTR-3UTR GCA 90 bp | TATCAAACATCCCATTACAAACAGGGAGAAGGCATGATGTCATGCTTTGCCTGTATTGAAAACTGGAGCTaGCAAAGAAGCTGCCACCAA | + |
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Preference number: 2 (lower is better) Translates to: YQTSHYKQGEGMMSCFACIENWS*QRSCHQ Trigger: TTGGTGGCAGCTTCTTTGGCAGCTCCAGTTTTCAAT...ACAGGCAAAGCATGACATCATGCCTTCTCCCTGTTTGTAATGGGATGTTTGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR-3UTR GCA 90 bp | TTTCAAAATGTACTGCATTTTAAAGCTCTGTACACCTTTACAGTACCCACAGCTACGAAGTTGCTTCCTTaGTGCTGGATCTGGGTGCTT | + |
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Preference number: 2 (lower is better) Translates to: FQNVLHFKALYTFTVPTATKLLP*CWIWVL Trigger: AAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGT...AGCTGTGGGTACTGTAAAGGTGTACAGAGCTTTAAAATGCAGTACATTTTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| 3UTR-3UTR TCA 90 bp | TTTCAAAATGTACTGCATTTTAAAGCTCTGTACACCTTTACAGTACCCACAGCTTGCTGTCAGCATAATTaGAAACTGGAGCTGCCAAAG | + |
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Preference number: 2 (lower is better) Translates to: FQNVLHFKALYTFTVPTACCQHN*KLELPK Trigger: CTTTGGCAGCTCCAGTTTTCAATTATGCTGACAGCA...AGCTGTGGGTACTGTAAAGGTGTACAGAGCTTTAAAATGCAGTACATTTTGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR-3UTR CCA 90 bp | AAAATGTACTGCATTTTAAAGCTCTGTACACCTTTACAGTACCCACAGCTAAGTGCCACCAAAATTAACTaGACTGCTGTATTTACCTTG | + |
|
Preference number: 2 (lower is better) Translates to: KMYCILKLCTPLQYPQLSATKIN*TAVFTL Trigger: CAAGGTAAATACAGCAGTCCAGTTAATTTTGGTGGC...ACTTAGCTGTGGGTACTGTAAAGGTGTACAGAGCTTTAAAATGCAGTACATTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR-3UTR TCA 90 bp | AAAATGTACTGCATTTTAAAGCTCTGTACACCTTTACAGTACCCACAGCTAAGTTATTTACATGACATATaGGCACTGGTTCCAGTATCA | + |
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Preference number: 2 (lower is better) Translates to: KMYCILKLCTPLQYPQLSYLHDI*ALVPVS Trigger: TGATACTGGAACCAGTGCTCATATGTCATGTAAATA...ACTTAGCTGTGGGTACTGTAAAGGTGTACAGAGCTTTAAAATGCAGTACATTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| 3UTR TCA 72 bp | GGAAAGTCCTGTAGCTTTCGCTGGCGCTGCTGCCGATaGCGAAGTTGCTTCCTTGCTGCTGGATCTGGGTGC | + |
|
Preference number: 3 (lower is better) Translates to: GKSCSFRWRCCR*RSCFLAAGSGC Trigger: GCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGCCAGCGAAAGCTACAGGACTTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 ENSMUST00000124836.8 |
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| 3UTR GCA 72 bp | TCGCTGGCGCTGCTGCCGATGACGAAGTTGCTTCCTTaGTGCTGGATCTGGGTGCTTCTCATTTGCCCTTTA | + |
|
Preference number: 3 (lower is better) Translates to: SLALLPMTKLLP*CWIWVLLICPL Trigger: TAAAGGGCAAATGAGAAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGCCAGCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR CCA 72 bp | GCGCTGCTGCCGATGACGAAGTTGCTTCCTTGCTGCTaGATCTGGGTGCTTCTCATTTGCCCTTTATCACCT | + |
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Preference number: 3 (lower is better) Translates to: ALLPMTKLLPCC*IWVLLICPLSP Trigger: AGGTGATAAAGGGCAAATGAGAAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR-3UTR CAA 90 bp | CTTTCGCAAGCTGAACACCAAGATCAGGAAAGTCCTGTAGCTTTCGCTGGCGCTGACGAAGTTGCTTCCTaGCTGCTGGATCTGGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: LSQAEHQDQESPVAFAGADEVAS*LLDLGA Trigger: AGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTC...AGCGCCAGCGAAAGCTACAGGACTTTCCTGATCTTGGTGTTCAGCTTGCGAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 ENSMUST00000124836.8 |
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| 3UTR-3UTR CAA 90 bp | CTTTCGCAAGCTGAACACCAAGATCAGGAAAGTCCTGTAGCTTTCGCTGGCGCTCTGCCGATGACGAAGTaGCTTCCTTGCTGCTGGATC | + |
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Preference number: 3 (lower is better) Translates to: LSQAEHQDQESPVAFAGALPMTK*LPCCWI Trigger: GATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAG...AGCGCCAGCGAAAGCTACAGGACTTTCCTGATCTTGGTGTTCAGCTTGCGAAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 ENSMUST00000124836.8 |
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| 3UTR-3UTR CAA 90 bp | CAAACATCCCATTACAAACAGGGAGAAGGCATGATGTCATGCTTTGCCTGTAAGGACGAAGTTGCTTCCTaGCTGCTGGATCTGGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: QTSHYKQGEGMMSCFACKDEVAS*LLDLGA Trigger: AGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTC...CTTACAGGCAAAGCATGACATCATGCCTTCTCCCTGTTTGTAATGGGATGTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| 3UTR-3UTR CAA 90 bp | AGACATGGTTTGTCTGACAAGACCTTTCGCAAGCTGAACACCAAGATCAGGAAACTGCCGATGACGAAGTaGCTTCCTTGCTGCTGGATC | + |
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Preference number: 3 (lower is better) Translates to: RHGLSDKTFRKLNTKIRKLPMTK*LPCCWI Trigger: GATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAG...TTTCCTGATCTTGGTGTTCAGCTTGCGAAAGGTCTTGTCAGACAAACCATGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 ENSMUST00000124836.8 |
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| 3UTR GCA 72 bp | TTGCTTCCTTGCTGCTGGATCTGGGTGCTTCTCATTTaGCCTTTATCACCTGAACAGTTTTCCGACCATAGT | + |
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Preference number: 3 (lower is better) Translates to: LLPCCWIWVLLI*PLSPEQFSDHS Trigger: ACTATGGTCGGAAAACTGTTCAGGTGATAAAGGGCAAATGAGAAGCACCCAGATCCAGCAGCAAGGAAGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR-3UTR CAA 90 bp | ATTTTCGCCGTACATTTCTTCAGTTTTGAAGACATGGTTTGTCTGACAAGACCTCTGCCGATGACGAAGTaGCTTCCTTGCTGCTGGATC | + |
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Preference number: 3 (lower is better) Translates to: IFAVHFFSFEDMVCLTRPLPMTK*LPCCWI Trigger: GATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAG...AGGTCTTGTCAGACAAACCATGTCTTCAAAACTGAAGAAATGTACGGCGAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 ENSMUST00000124836.8 |
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| 3UTR-3UTR CAA 90 bp | CAGGGAGAAGGCATGATGTCATGCTTTGCCTGTAAGATGCAAAGCGTAATACATCCCTCCTGCTTTCCTTaGTTTCCATGTTACCAACTA | + |
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Preference number: 3 (lower is better) Translates to: QGEGMMSCFACKMQSVIHPSCFP*FPCYQL Trigger: TAGTTGGTAACATGGAAACAAAGGAAAGCAGGAGGG...ATGTATTACGCTTTGCATCTTACAGGCAAAGCATGACATCATGCCTTCTCCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| 3UTR CCA 72 bp | ACTGGAGCTGCCAAAGAAGCTGCCACCAAAATTAACTaGACTGCTGTATTTACCTTGCTGATGAATGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: TGAAKEAATKIN*TAVFTLLMNVG Trigger: ACCAACATTCATCAGCAAGGTAAATACAGCAGTCCAGTTAATTTTGGTGGCAGCTTCTTTGGCAGCTCCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| 3UTR TCA 72 bp | TTATCTGTTATCCTGATACATAAACTATTTGGTACCTaGGAGGCTGGAAGACTACTCGTGAACTTCAATGCC | + |
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Preference number: 3 (lower is better) Translates to: LSVILIHKLFGT*EAGRLLVNFNA Trigger: GGCATTGAAGTTCACGAGTAGTCTTCCAGCCTCTCAGGTACCAAATAGTTTATGTATCAGGATAACAGATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| 3UTR CCA 72 bp | AGAAAGTTTCATCCTATTTACATGACATATGAGCACTaGTTCCAGTATCAAACATCCCATTACAAACAGGGA | + |
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Preference number: 3 (lower is better) Translates to: RKFHPIYMTYEH*FQYQTSHYKQG Trigger: TCCCTGTTTGTAATGGGATGTTTGATACTGGAACCAGTGCTCATATGTCATGTAAATAGGATGAAACTTTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| CDS-3UTR TCA 90 bp | TCGCTGGCGCTGCTGCCGATGACGAAGTTGCTTCCTTGCTGCTGGATCTGGGTGAGCACTTCCCAAAGCTaGTTTTTGGTTGGCCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: SLALLPMTKLLPCCWIWVSTSQS*FLVGPV Trigger: AACTGGGCCAACCAAAAATCAGCTTTGGGAAGTGCT...CACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGCCAGCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| 3UTR CAA 72 bp | TTCGCTGGCGCTGCTGCCGATGACGAAGTTGCTTCCTaGCTGCTGGATCTGGGTGCTTCTCATTTGCCCTTT | + |
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Preference number: 4 (lower is better) Translates to: FAGAAADDEVAS*LLDLGASHLPF Trigger: AAAGGGCAAATGAGAAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGCCAGCGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124834.8 |
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| CDS-3UTR TCA 90 bp | CTGGCGCTGCTGCCGATGACGAAGTTGCTTCCTTGCTGCTGGATCTGGGTGCTTAGCACTTCCCAAAGCTaGTTTTTGGTTGGCCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: LALLPMTKLLPCCWIWVLSTSQS*FLVGPV Trigger: AACTGGGCCAACCAAAAATCAGCTTTGGGAAGTGCT...AAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CCA 90 bp | TCGCTGGCGCTGCTGCCGATGACGAAGTTGCTTCCTTGCTGCTGGATCTGGGTGAACTTTATCAGCAAGTaGATCAAGAGCACTTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: SLALLPMTKLLPCCWIWVNFISK*IKSTSQ Trigger: TTGGGAAGTGCTCTTGATCCACTTGCTGATAAAGTT...CACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGCCAGCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CCA 90 bp | CTGGCGCTGCTGCCGATGACGAAGTTGCTTCCTTGCTGCTGGATCTGGGTGCTTGCCACCAAAATTAACTaGACTGCTGTATTTACCTTG | + |
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Preference number: 4 (lower is better) Translates to: LALLPMTKLLPCCWIWVLATKIN*TAVFTL Trigger: CAAGGTAAATACAGCAGTCCAGTTAATTTTGGTGGC...AAGCACCCAGATCCAGCAGCAAGGAAGCAACTTCGTCATCGGCAGCAGCGCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR GCA 90 bp | GGTTTGTCTGACAAGACCTTTCGCAAGCTGAACACCAAGATCAGGAAAGTCCTGATTGAAAACTGGAGCTaGCAAAGAAGCTGCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: GLSDKTFRKLNTKIRKVLIENWS*QRSCHQ Trigger: TTGGTGGCAGCTTCTTTGGCAGCTCCAGTTTTCAAT...CAGGACTTTCCTGATCTTGGTGTTCAGCTTGCGAAAGGTCTTGTCAGACAAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CCA 90 bp | AGACATGGTTTGTCTGACAAGACCTTTCGCAAGCTGAACACCAAGATCAGGAAACCCAAAGCTGATTTTTaGTTGGCCCAGTTTCGAGCA | + |
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Preference number: 4 (lower is better) Translates to: RHGLSDKTFRKLNTKIRKPKADF*LAQFRA Trigger: TGCTCGAAACTGGGCCAACCAAAAATCAGCTTTGGG...TTTCCTGATCTTGGTGTTCAGCTTGCGAAAGGTCTTGTCAGACAAACCATGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR TCA 90 bp | TATCAAACATCCCATTACAAACAGGGAGAAGGCATGATGTCATGCTTTGCCTGTGCAGAGTTCGGTATCTaGCATAAAACACAGCAGCGA | + |
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Preference number: 4 (lower is better) Translates to: YQTSHYKQGEGMMSCFACAEFGI*HKTQQR Trigger: TCGCTGCTGTGTTTTATGTCAGATACCGAACTCTGC...ACAGGCAAAGCATGACATCATGCCTTCTCCCTGTTTGTAATGGGATGTTTGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028835.13 |
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| CDS-3UTR GCA 90 bp | CTTTCGCAAGCTGAACACCAAGATCAGGAAAGTCCTGTAGCTTTCGCTGGCGCTGACTGGAATAAGATCTaGATAGGTCAAGCTAATATA | + |
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Preference number: 4 (lower is better) Translates to: LSQAEHQDQESPVAFAGADWNKI*IGQANI Trigger: TATATTAGCTTGACCTATGCAGATCTTATTCCAGTC...AGCGCCAGCGAAAGCTACAGGACTTTCCTGATCTTGGTGTTCAGCTTGCGAAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR GCA 90 bp | AGACATGGTTTGTCTGACAAGACCTTTCGCAAGCTGAACACCAAGATCAGGAAAATTGAAAACTGGAGCTaGCAAAGAAGCTGCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: RHGLSDKTFRKLNTKIRKIENWS*QRSCHQ Trigger: TTGGTGGCAGCTTCTTTGGCAGCTCCAGTTTTCAAT...TTTCCTGATCTTGGTGTTCAGCTTGCGAAAGGTCTTGTCAGACAAACCATGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CCA 90 bp | GGTTTGTCTGACAAGACCTTTCGCAAGCTGAACACCAAGATCAGGAAAGTCCTGTATCATGTAAGTGAGTaGGACTGGAATAAGATCTGC | + |
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Preference number: 4 (lower is better) Translates to: GLSDKTFRKLNTKIRKVLYHVSE*DWNKIC Trigger: GCAGATCTTATTCCAGTCCCACTCACTTACATGATA...CAGGACTTTCCTGATCTTGGTGTTCAGCTTGCGAAAGGTCTTGTCAGACAAACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CCA 90 bp | GGTTTGTCTGACAAGACCTTTCGCAAGCTGAACACCAAGATCAGGAAAGTCCTGGCCACCAAAATTAACTaGACTGCTGTATTTACCTTG | + |
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Preference number: 4 (lower is better) Translates to: GLSDKTFRKLNTKIRKVLATKIN*TAVFTL Trigger: CAAGGTAAATACAGCAGTCCAGTTAATTTTGGTGGC...CAGGACTTTCCTGATCTTGGTGTTCAGCTTGCGAAAGGTCTTGTCAGACAAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CCA 90 bp | TACAAACAGGGAGAAGGCATGATGTCATGCTTTGCCTGTAAGATGCAAAGCGTAGTAAGTGAGTGGGACTaGAATAAGATCTGCATAGGT | + |
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Preference number: 4 (lower is better) Translates to: YKQGEGMMSCFACKMQSVVSEWD*NKICIG Trigger: ACCTATGCAGATCTTATTCCAGTCCCACTCACTTAC...TACGCTTTGCATCTTACAGGCAAAGCATGACATCATGCCTTCTCCCTGTTTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028835.13 |
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| CDS-3UTR CCA 90 bp | AGACATGGTTTGTCTGACAAGACCTTTCGCAAGCTGAACACCAAGATCAGGAAAAGCATAATTGAAAACTaGAGCTGCCAAAGAAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RHGLSDKTFRKLNTKIRKSIIEN*SCQRSC Trigger: GCAGCTTCTTTGGCAGCTCCAGTTTTCAATTATGCT...TTTCCTGATCTTGGTGTTCAGCTTGCGAAAGGTCTTGTCAGACAAACCATGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR TCA 90 bp | GAGCTTATTTTCGCCGTACATTTCTTCAGTTTTGAAGACATGGTTTGTCTGACAGCAGAGTTCGGTATCTaGCATAAAACACAGCAGCGA | + |
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Preference number: 4 (lower is better) Translates to: ELIFAVHFFSFEDMVCLTAEFGI*HKTQQR Trigger: TCGCTGCTGTGTTTTATGTCAGATACCGAACTCTGC...TGTCAGACAAACCATGTCTTCAAAACTGAAGAAATGTACGGCGAAAATAAGCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR TCA 90 bp | AATACACTGGAAATTCTGTATAGGCCCATGATCGAGCTTATTTTCGCCGTACATTGCTGTCAGCATAATTaGAAACTGGAGCTGCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: NTLEILYRPMIELIFAVHCCQHN*KLELPK Trigger: CTTTGGCAGCTCCAGTTTTCAATTATGCTGACAGCA...ATGTACGGCGAAAATAAGCTCGATCATGGGCCTATACAGAATTTCCAGTGTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR TCA 90 bp | CATATGAGCACTGGTTCCAGTATCAAACATCCCATTACAAACAGGGAGAAGGCAATAATAACTGTATGCTaGTGCAGCTGTAGTGAATGC | + |
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Preference number: 4 (lower is better) Translates to: HMSTGSSIKHPITNREKAIITVC*CSCSEC Trigger: GCATTCACTACAGCTGCATCAGCATACAGTTATTAT...TGCCTTCTCCCTGTTTGTAATGGGATGTTTGATACTGGAACCAGTGCTCATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028835.13 |
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| CDS-3UTR CCA 90 bp | GTGTATGGTGTGTATCCAATCTTAGGAAATTCCCTCCTGCTTTCCTTTGTTTCCAGCATAATTGAAAACTaGAGCTGCCAAAGAAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: VYGVYPILGNSLLLSFVSSIIEN*SCQRSC Trigger: GCAGCTTCTTTGGCAGCTCCAGTTTTCAATTATGCT...GGAAACAAAGGAAAGCAGGAGGGAATTTCCTAAGATTGGATACACACCATACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CCA 90 bp | CTTATTTTCGCCGTACATTTCTTCAGTTTTGAAGACATGGTTTGTCTGACAAGACCCAAAGCTGATTTTTaGTTGGCCCAGTTTCGAGCA | + |
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Preference number: 4 (lower is better) Translates to: LIFAVHFFSFEDMVCLTRPKADF*LAQFRA Trigger: TGCTCGAAACTGGGCCAACCAAAAATCAGCTTTGGG...TCTTGTCAGACAAACCATGTCTTCAAAACTGAAGAAATGTACGGCGAAAATAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CCA 90 bp | GTGTATGGTGTGTATCCAATCTTAGGAAATTCCCTCCTGCTTTCCTTTGTTTCCAACTTTATCAGCAAGTaGATCAAGAGCACTTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: VYGVYPILGNSLLLSFVSNFISK*IKSTSQ Trigger: TTGGGAAGTGCTCTTGATCCACTTGCTGATAAAGTT...GGAAACAAAGGAAAGCAGGAGGGAATTTCCTAAGATTGGATACACACCATACAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR TCA 90 bp | ATTTTCGCCGTACATTTCTTCAGTTTTGAAGACATGGTTTGTCTGACAAGACCTATAATAACTGTATGCTaGTGCAGCTGTAGTGAATGC | + |
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Preference number: 4 (lower is better) Translates to: IFAVHFFSFEDMVCLTRPIITVC*CSCSEC Trigger: GCATTCACTACAGCTGCATCAGCATACAGTTATTAT...AGGTCTTGTCAGACAAACCATGTCTTCAAAACTGAAGAAATGTACGGCGAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR GCA 90 bp | GAGCTTATTTTCGCCGTACATTTCTTCAGTTTTGAAGACATGGTTTGTCTGACAGACTGGAATAAGATCTaGATAGGTCAAGCTAATATA | + |
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Preference number: 4 (lower is better) Translates to: ELIFAVHFFSFEDMVCLTDWNKI*IGQANI Trigger: TATATTAGCTTGACCTATGCAGATCTTATTCCAGTC...TGTCAGACAAACCATGTCTTCAAAACTGAAGAAATGTACGGCGAAAATAAGCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS CCA 90 bp | TCATTGACAACAAATTTGGGATTGTCCATGGATTTTCATACGAGCTaGCGGCGCTCGCCGGGACCCATCGGGCGCTGGGGGCCTGCGCGG | + |
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Preference number: 5 (lower is better) Translates to: SLTTNLGLSMDFHTS*RRSPGPIGRWGPAR Trigger: CCGCGCAGGCCCCCAGCGCCCGATGGGTCCCGGCGAGCGCCGCCAGCTCGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000110122.10 ENSMUST00000124834.8 |
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| CDS TCA 90 bp | AAGAATCAGGTAGCCCAACACGGGGGCCAGGCCAATTCTTGTCATTaGCAACAAATTTGGGATTGTCCATGGATTTTCATACGAGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: KNQVAQHGGQANSCH*QQIWDCPWIFIRAG Trigger: GCCAGCTCGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTACCTGATTCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000110122.10 ENSMUST00000124834.8 |
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| CDS TCA 90 bp | AAGAATCAGGTAGCCCAACACGGGGGCCAGGCCAATTCTTGTCATTaGCAACAAATTTGGGATTGTCCATGGATTTTCATACTGTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: KNQVAQHGGQANSCH*QQIWDCPWIFILWH Trigger: ATGCCACAGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTACCTGATTCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154160.2 |
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| CDS CCA 90 bp | ACTTTATCAGCAAGTGGATCAAGAGCACTTCCCAAAGCTGATTTTTaGTTGGCCCAGTTTCGAGCAATAAATCCATCCAACAAATCCGTT | + |
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Preference number: 5 (lower is better) Translates to: TLSASGSRALPKADF*LAQFRAINPSNKSV Trigger: AACGGATTTGTTGGATGGATTTATTGCTCGAAACTGGGCCAACCAAAAATCAGCTTTGGGAAGTGCTCTTGATCCACTTGCTGATAAAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 ENSMUST00000154160.2 |
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| CDS-3UTR CAA 90 bp | CATATGAGCACTGGTTCCAGTATCAAACATCCCATTACAAACAGGGAGAAGGCAGGCCAATTCTTGTCATaGACAACAAATTTGGGATTG | + |
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Preference number: 5 (lower is better) Translates to: HMSTGSSIKHPITNREKAGQFLS*TTNLGL Trigger: CAATCCCAAATTTGTTGTCAATGACAAGAATTGGCC...TGCCTTCTCCCTGTTTGTAATGGGATGTTTGATACTGGAACCAGTGCTCATATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| CDS-3UTR CAA 90 bp | AGACATGGTTTGTCTGACAAGACCTTTCGCAAGCTGAACACCAAGATCAGGAAAGGCCAATTCTTGTCATaGACAACAAATTTGGGATTG | + |
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Preference number: 5 (lower is better) Translates to: RHGLSDKTFRKLNTKIRKGQFLS*TTNLGL Trigger: CAATCCCAAATTTGTTGTCAATGACAAGAATTGGCC...TTTCCTGATCTTGGTGTTCAGCTTGCGAAAGGTCTTGTCAGACAAACCATGTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| CDS TCA 90 bp | GATAAGAACTTTATCAGCAAGTGGATCAAGAGCACTTCCCAAAGCTaGTTTTTGGTTGGCCCAGTTTCGAGCAATAAATCCATCCAACAA | + |
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Preference number: 5 (lower is better) Translates to: DKNFISKWIKSTSQS*FLVGPVSSNKSIQQ Trigger: TTGTTGGATGGATTTATTGCTCGAAACTGGGCCAACCAAAAATCAGCTTTGGGAAGTGCTCTTGATCCACTTGCTGATAAAGTTCTTATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 ENSMUST00000154160.2 |
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| CDS-3UTR CAA 90 bp | TACAAACAGGGAGAAGGCATGATGTCATGCTTTGCCTGTAAGATGCAAAGCGTAACAACAAATTTGGGATaGTCCATGGATTTTCATACG | + |
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Preference number: 5 (lower is better) Translates to: YKQGEGMMSCFACKMQSVTTNLG*SMDFHT Trigger: CGTATGAAAATCCATGGACAATCCCAAATTTGTTGT...TACGCTTTGCATCTTACAGGCAAAGCATGACATCATGCCTTCTCCCTGTTTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| CDS-3UTR CAA 90 bp | AATACACTGGAAATTCTGTATAGGCCCATGATCGAGCTTATTTTCGCCGTACATAAAGCTGATTTTTGGTaGGCCCAGTTTCGAGCAATA | + |
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Preference number: 5 (lower is better) Translates to: NTLEILYRPMIELIFAVHKADFW*AQFRAI Trigger: TATTGCTCGAAACTGGGCCAACCAAAAATCAGCTTT...ATGTACGGCGAAAATAAGCTCGATCATGGGCCTATACAGAATTTCCAGTGTATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CAA 90 bp | CAGGGAGAAGGCATGATGTCATGCTTTGCCTGTAAGATGCAAAGCGTAATACATACTGCTGTATTTACCTaGCTGATGAATGTTGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: QGEGMMSCFACKMQSVIHTAVFT*LMNVGF Trigger: AAAACCAACATTCATCAGCAAGGTAAATACAGCAGT...ATGTATTACGCTTTGCATCTTACAGGCAAAGCATGACATCATGCCTTCTCCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028835.13 |
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| CDS-3UTR CAA 90 bp | AGACATGGTTTGTCTGACAAGACCTTTCGCAAGCTGAACACCAAGATCAGGAAAACTGCTGTATTTACCTaGCTGATGAATGTTGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: RHGLSDKTFRKLNTKIRKTAVFT*LMNVGF Trigger: AAAACCAACATTCATCAGCAAGGTAAATACAGCAGT...TTTCCTGATCTTGGTGTTCAGCTTGCGAAAGGTCTTGTCAGACAAACCATGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 |
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| CDS-3UTR CAA 90 bp | AAAATGTACTGCATTTTAAAGCTCTGTACACCTTTACAGTACCCACAGCTAAGTGGGCCAGGCCAATTCTaGTCATTGACAACAAATTTG | + |
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Preference number: 5 (lower is better) Translates to: KMYCILKLCTPLQYPQLSGPGQF*SLTTNL Trigger: CAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCC...ACTTAGCTGTGGGTACTGTAAAGGTGTACAGAGCTTTAAAATGCAGTACATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028835.13 ENSMUST00000124834.8 |
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| CDS CAA 90 bp | AGCCCAACACGGGGGCCAGGCCAATTCTTGTCATTGACAACAAATTaGGGATTGTCCATGGATTTTCATACGAGCTGGCGGCGCTCGCCG | + |
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Preference number: 6 (lower is better) Translates to: SPTRGPGQFLSLTTN*GLSMDFHTSWRRSP Trigger: CGGCGAGCGCCGCCAGCTCGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000110122.10 ENSMUST00000124834.8 |
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| CDS CAA 72 bp | CGGGGGCCAGGCCAATTCTTGTCATTGACAACAAATTaGGGATTGTCCATGGATTTTCATACGAGCTGGCGG | + |
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Preference number: 6 (lower is better) Translates to: RGPGQFLSLTTN*GLSMDFHTSWR Trigger: CCGCCAGCTCGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000110122.10 ENSMUST00000124834.8 |
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| CDS CAA 72 bp | GAATCAGGTAGCCCAACACGGGGGCCAGGCCAATTCTaGTCATTGACAACAAATTTGGGATTGTCCATGGAT | + |
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Preference number: 6 (lower is better) Translates to: ESGSPTRGPGQF*SLTTNLGLSMD Trigger: ATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTACCTGATTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000028835.13 ENSMUST00000110122.10 ENSMUST00000124834.8 ENSMUST00000154160.2 |
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| CDS CAA 90 bp | CAAGAATCAGGTAGCCCAACACGGGGGCCAGGCCAATTCTTGTCATaGACAACAAATTTGGGATTGTCCATGGATTTTCATACGAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: QESGSPTRGPGQFLS*TTNLGLSMDFHTSW Trigger: CCAGCTCGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTACCTGATTCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000110122.10 ENSMUST00000124834.8 |
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| CDS CAA 90 bp | CAAGAATCAGGTAGCCCAACACGGGGGCCAGGCCAATTCTTGTCATaGACAACAAATTTGGGATTGTCCATGGATTTTCATACTGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: QESGSPTRGPGQFLS*TTNLGLSMDFHTVA Trigger: TGCCACAGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTACCTGATTCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154160.2 |
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| CDS CAA 72 bp | GGTAGCCCAACACGGGGGCCAGGCCAATTCTTGTCATaGACAACAAATTTGGGATTGTCCATGGATTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: GSPTRGPGQFLS*TTNLGLSMDFH Trigger: ATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000028835.13 ENSMUST00000110122.10 ENSMUST00000124834.8 ENSMUST00000154160.2 |
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| CDS CAA 90 bp | CTTCTTCAAGAATCAGGTAGCCCAACACGGGGGCCAGGCCAATTCTaGTCATTGACAACAAATTTGGGATTGTCCATGGATTTTCATACG | + |
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Preference number: 6 (lower is better) Translates to: LLQESGSPTRGPGQF*SLTTNLGLSMDFHT Trigger: CGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTACCTGATTCTTGAAGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000110122.10 ENSMUST00000124834.8 |
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| CDS TCA 72 bp | GTAGCCCAACACGGGGGCCAGGCCAATTCTTGTCATTaGCAACAAATTTGGGATTGTCCATGGATTTTCATA | + |
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Preference number: 6 (lower is better) Translates to: VAQHGGQANSCH*QQIWDCPWIFI Trigger: TATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000028835.13 ENSMUST00000110122.10 ENSMUST00000124834.8 ENSMUST00000154160.2 |
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| CDS CCA 72 bp | GCAAGTGGATCAAGAGCACTTCCCAAAGCTGATTTTTaGTTGGCCCAGTTTCGAGCAATAAATCCATCCAAC | + |
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Preference number: 6 (lower is better) Translates to: ASGSRALPKADF*LAQFRAINPSN Trigger: GTTGGATGGATTTATTGCTCGAAACTGGGCCAACCAAAAATCAGCTTTGGGAAGTGCTCTTGATCCACTTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 ENSMUST00000154160.2 |
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| CDS CAA 90 bp | CTTCTTCAAGAATCAGGTAGCCCAACACGGGGGCCAGGCCAATTCTaGTCATTGACAACAAATTTGGGATTGTCCATGGATTTTCATACT | + |
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Preference number: 6 (lower is better) Translates to: LLQESGSPTRGPGQF*SLTTNLGLSMDFHT Trigger: AGTATGAAAATCCATGGACAATCCCAAATTTGTTGTCAATGACAAGAATTGGCCTGGCCCCCGTGTTGGGCTACCTGATTCTTGAAGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000154160.2 |
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| CDS CAA 90 bp | TTATCAGCAAGTGGATCAAGAGCACTTCCCAAAGCTGATTTTTGGTaGGCCCAGTTTCGAGCAATAAATCCATCCAACAAATCCGTTAGC | + |
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Preference number: 6 (lower is better) Translates to: LSASGSRALPKADFW*AQFRAINPSNKSVS Trigger: GCTAACGGATTTGTTGGATGGATTTATTGCTCGAAACTGGGCCAACCAAAAATCAGCTTTGGGAAGTGCTCTTGATCCACTTGCTGATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 ENSMUST00000154160.2 |
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| CDS TCA 72 bp | TTTATCAGCAAGTGGATCAAGAGCACTTCCCAAAGCTaGTTTTTGGTTGGCCCAGTTTCGAGCAATAAATCC | + |
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Preference number: 6 (lower is better) Translates to: FISKWIKSTSQS*FLVGPVSSNKS Trigger: GGATTTATTGCTCGAAACTGGGCCAACCAAAAATCAGCTTTGGGAAGTGCTCTTGATCCACTTGCTGATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 ENSMUST00000154160.2 |
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| CDS CAA 72 bp | AGTGGATCAAGAGCACTTCCCAAAGCTGATTTTTGGTaGGCCCAGTTTCGAGCAATAAATCCATCCAACAAA | + |
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Preference number: 6 (lower is better) Translates to: SGSRALPKADFW*AQFRAINPSNK Trigger: TTTGTTGGATGGATTTATTGCTCGAAACTGGGCCAACCAAAAATCAGCTTTGGGAAGTGCTCTTGATCCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000028835.13 ENSMUST00000124836.8 ENSMUST00000154160.2 |
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