RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CRLF3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017561

Ensembl transcript IDs: ENSMUST00000061283.15, ENSMUST00000103233.10, ENSMUST00000177825.8, ENSMUST00000178893.8, ENSMUST00000179855.2

Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTGGAGAGGGTaGACACTCAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGC +
Preference number: 1 (lower is better)
Translates to: CWLRPRHSRRGTWRG*TLRTGQAPRSLASR
Trigger: GCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTGTTCACCCTCTCCACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR GCA 90 bp CACAGCCCGTGTGCACGGCTGAGGAAAGATGCATGGGGCCTGCTGTaGACACGTGACCTGCTAACACTGCTGTGTTCTTCCAAAAGTAGC +
Preference number: 1 (lower is better)
Translates to: HSPCARLRKDAWGLL*TRDLLTLLCSSKSS
Trigger: GCTACTTTTGGAAGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTTCCTCAGCCGTGCACACGGGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR CCA 90 bp CGTGGAGAGGGTGAACACTCAGGACTGGACAAGCACCGAGGAGCCTaGCCTCTCGCTGTCTTCTGTGTTTACTTCTGGCCTTCAATCTTG +
Preference number: 1 (lower is better)
Translates to: RGEGEHSGLDKHRGA*PLAVFCVYFWPSIL
Trigger: CAAGATTGAAGGCCAGAAGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTGTTCACCCTCTCCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR CCA 90 bp TATAACACTGCACACAGCCCGTGTGCACGGCTGAGGAAAGATGCATaGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCT +
Preference number: 1 (lower is better)
Translates to: YNTAHSPCARLRKDA*GLLCTRDLLTLLCS
Trigger: AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTTCCTCAGCCGTGCACACGGGCTGTGTGCAGTGTTATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR GCA 90 bp CACGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTaGACATACTCCTATACTGTCTCTTCGGTCTGGCTGTCCCACAGT +
Preference number: 1 (lower is better)
Translates to: HGLVPLQRFVAILPF*TYSYTVSSVWLSHS
Trigger: ACTGTGGGACAGCCAGACCGAAGAGACAGTATAGGAGTATGTGCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR GCA 90 bp ACACTGGCTGTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTACTGGCTGTCACAGATaGTGGCTCAGACCCAGACAC +
Preference number: 2 (lower is better)
Translates to: TLAVTDAGSDPDTPGGGRTGCHR*WLRPRH
Trigger: GTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGT...ACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR-3UTR GCA 90 bp GAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCCAAGGACTCCATTCCTaGCTGCCGTCTCCTCGGGCG +
Preference number: 2 (lower is better)
Translates to: EKRASEVKRATGLLEQPVQGLHS*LPSPRA
Trigger: CGCCCGAGGAGACGGCAGGCAGGAATGGAGTCCTTG...GACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR TCA 90 bp GTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTGGAGAGGGTCAGAGACAACTAAACTaGGGACAGAAACAGCAAACC +
Preference number: 2 (lower is better)
Translates to: VTDAGSDPDTPGGGRGEGQRQLN*GQKQQT
Trigger: GGTTTGCTGTTTCTGTCCTCAGTTTAGTTGTCTCTG...ACCCTCTCCACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR-3UTR GCA 90 bp GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGGGAGCCAGAGGTAACTaGAGGCAACTGATTGGTCAT +
Preference number: 2 (lower is better)
Translates to: EVKRATGLLEQPVKHHLPGARGN*RQLIGH
Trigger: ATGACCAATCAGTTGCCTGCAGTTACCTCTGGCTCC...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR CCA 90 bp AGAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTGTGGAGTGGCCTGTCTaGGGAACACTCCAAGGACTC +
Preference number: 2 (lower is better)
Translates to: RKTSIRSKEGHRPARAASVEWPV*GTLQGL
Trigger: GAGTCCTTGGAGTGTTCCCCAGACAGGCCACTCCAC...ACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR TCA 90 bp CCAGTGTGGAGTGGCCTGTCTGGGGAACACTCCAAGGACTCCATTCCTGCCTGCCTCGGGCGCAGACTCTaGATTGATAATCTACATTGG +
Preference number: 2 (lower is better)
Translates to: PVWSGLSGEHSKDSIPACLGRRL*IDNLHW
Trigger: CCAATGTAGATTATCAATTCAGAGTCTGCGCCCGAG...GCAGGCAGGAATGGAGTCCTTGGAGTGTTCCCCAGACAGGCCACTCCACACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR TCA 90 bp AAGACTGCACCATTCGTGCTGATGCACACGGCTTGGTCCCGCTGCAGAGATTCGCTCGGGCGCAGACTCTaGATTGATAATCTACATTGG +
Preference number: 2 (lower is better)
Translates to: KTAPFVLMHTAWSRCRDSLGRRL*IDNLHW
Trigger: CCAATGTAGATTATCAATTCAGAGTCTGCGCCCGAG...CGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR TCA 90 bp GATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTTCCGACCAGTTCTCAACCTaGCATCACACTGACTATAAC +
Preference number: 2 (lower is better)
Translates to: DAWGLLCTRDLLTLLCSSDQFST*HHTDYN
Trigger: GTTATAGTCAGTGTGATGTCAGGTTGAGAACTGGTC...GGAAGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR-3UTR GCA 90 bp GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGGATTTGCAGTACATTTaGGGAACTGAAGCCTGTAAT +
Preference number: 2 (lower is better)
Translates to: EVKRATGLLEQPVKHHLPDLQYI*GTEACN
Trigger: ATTACAGGCTTCAGTTCCGCAAATGTACTGCAAATC...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178893.8
3UTR CAA 90 bp TTTTCCATTGACAAAGACTGCACCATTCGTGCTGATGCACACGGCTaGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCACA +
Preference number: 2 (lower is better)
Translates to: FSIDKDCTIRADAHG*VPLQRFVAILPFCT
Trigger: TGTGCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTTTGTCAATGGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR GCA 90 bp ACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACAACATTGGGGTCTATGTaGAACACTATGAACTCCGTT +
Preference number: 2 (lower is better)
Translates to: TSIRSKEGHRPARAASQTTLGSM*NTMNSV
Trigger: AACGGAGTTCATAGTGTTGCACATAGACCCCAATGT...TGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR GCA 90 bp GATGCACACGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCCTATATTTCTTCGACTaGTCAGACTGTATCCCTCAA +
Preference number: 2 (lower is better)
Translates to: DAHGLVPLQRFVAILPFCLYFFD*SDCIPQ
Trigger: TTGAGGGATACAGTCTGAGCAGTCGAAGAAATATAG...GCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR CCA 90 bp GGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTATCCGCGTTCCCACCTTCATaGCTGTTAGAAGTTCCTAGA +
Preference number: 2 (lower is better)
Translates to: GLGIIPEGYISSTAQTVSAFPPS*LLEVPR
Trigger: TCTAGGAACTTCTAACAGCCATGAAGGTGGGAACGC...GGATACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR CCA 90 bp CGAGGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTAGCGTTCCCACCTTCATaGCTGTTAGAAGTTCCTAGA +
Preference number: 2 (lower is better)
Translates to: RGLGIIPEGYISSTAQTVAFPPS*LLEVPR
Trigger: TCTAGGAACTTCTAACAGCCATGAAGGTGGGAACGC...TACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCCTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR GCA 90 bp GAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCGTCTTCAAAATGATTTaGAGTACATTTGCGGAACTG +
Preference number: 2 (lower is better)
Translates to: EKRASEVKRATGLLEQPVVFKMI*STFAEL
Trigger: CAGTTCCGCAAATGTACTGCAAATCATTTTGAAGAC...GACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178893.8
3UTR-3UTR GCA 90 bp CGAGGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTAACATTGGGGTCTATGTaGAACACTATGAACTCCGTT +
Preference number: 2 (lower is better)
Translates to: RGLGIIPEGYISSTAQTVTLGSM*NTMNSV
Trigger: AACGGAGTTCATAGTGTTGCACATAGACCCCAATGT...TACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCCTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR CCA 90 bp AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTCTTCAGGAAGAACAGTaGAAAAAGTATGCAGACTTT +
Preference number: 2 (lower is better)
Translates to: KDAWGLLCTRDLLTLLCSLQEEQ*KKYADF
Trigger: AAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAG...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR-3UTR CCA 90 bp TTGTCCACATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAGCGTTCCCACCTTCATaGCTGTTAGAAGTTCCTAGA +
Preference number: 2 (lower is better)
Translates to: LSTSLSSLLTETLQGEPRAFPPS*LLEVPR
Trigger: TCTAGGAACTTCTAACAGCCATGAAGGTGGGAACGC...TCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATGTGGACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103233.10
3UTR-3UTR TCA 90 bp CATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTCAGAGACAACTAAACTaGGGACAGAAACAGCAAACC +
Preference number: 2 (lower is better)
Translates to: HHSAHFLLKPYKVNPETFQRQLN*GQKQQT
Trigger: GGTTTGCTGTTTCTGTCCTCAGTTTAGTTGTCTCTG...AAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR-3UTR CCA 90 bp CATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTCTTCAGGAAGAACAGTaGAAAAAGTATGCAGACTTT +
Preference number: 2 (lower is better)
Translates to: HHSAHFLLKPYKVNPETFLQEEQ*KKYADF
Trigger: AAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAG...AAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR CCA 72 bp GCACACAGCCCGTGTGCACGGCTGAGGAAAGATGCATaGGGCCTGCTGTGCACACGTGACCTGCTAACACTG +
Preference number: 3 (lower is better)
Translates to: AHSPCARLRKDA*GLLCTRDLLTL
Trigger: CAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTTCCTCAGCCGTGCACACGGGCTGTGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR-3UTR CAA 90 bp GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGGCCCACAGAAGTAGGTaGGAGCGCTGGAGTAGAGAA +
Preference number: 3 (lower is better)
Translates to: EVKRATGLLEQPVKHHLPAHRSR*ERWSRE
Trigger: TTCTCTACTCCAGCGCTCCAACCTACTTCTGTGGGC...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR GCA 72 bp TGTGCACGGCTGAGGAAAGATGCATGGGGCCTGCTGTaGACACGTGACCTGCTAACACTGCTGTGTTCTTCC +
Preference number: 3 (lower is better)
Translates to: CARLRKDAWGLL*TRDLLTLLCSS
Trigger: GGAAGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTTCCTCAGCCGTGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR CCA 72 bp GGTGAACACTCAGGACTGGACAAGCACCGAGGAGCCTaGCCTCTCGCTGTCTTCTGTGTTTACTTCTGGCCT +
Preference number: 3 (lower is better)
Translates to: GEHSGLDKHRGA*PLAVFCVYFWP
Trigger: AGGCCAGAAGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTGTTCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR-3UTR CAA 90 bp GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGAAAAGTAGCTTCACCTaGAGGAATGCAGACCTCTGC +
Preference number: 3 (lower is better)
Translates to: EVKRATGLLEQPVKHHLPKSSFT*RNADLC
Trigger: GCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTT...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103233.10
3UTR GCA 72 bp GTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTaGACATACTCCTATACTGTCTCTTCGGTCTGGCTG +
Preference number: 3 (lower is better)
Translates to: VPLQRFVAILPF*TYSYTVSSVWL
Trigger: CAGCCAGACCGAAGAGACAGTATAGGAGTATGTGCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR CAA 90 bp AGAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTGGCGCAGACTCTGAATaGATAATCTACATTGGGGTC +
Preference number: 3 (lower is better)
Translates to: RKTSIRSKEGHRPARAASGADSE*IIYIGV
Trigger: GACCCCAATGTAGATTATCAATTCAGAGTCTGCGCC...ACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
3UTR-3UTR CAA 90 bp AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTAAAAGTAGCTTCACCTaGAGGAATGCAGACCTCTGC +
Preference number: 3 (lower is better)
Translates to: KDAWGLLCTRDLLTLLCSKSSFT*RNADLC
Trigger: GCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTT...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR-3UTR CAA 90 bp CGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCACATACTCCGTCTTCAAAATGATTaGCAGTACATTTGCGGAACT +
Preference number: 3 (lower is better)
Translates to: RLGPAAEIRSHSAFLHILRLQND*QYICGT
Trigger: AGTTCCGCAAATGTACTGCAAATCATTTTGAAGACG...GAGTATGTGCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178893.8
3UTR CCA 72 bp ACAGTTTATCACTCTCTTCTTCGATACCACCAAGAATaGCAATCTCACCTTCTCGGACCAGGTCATCTGCAG +
Preference number: 3 (lower is better)
Translates to: TVYHSLLRYHQE*QSHLLGPGHLQ
Trigger: CTGCAGATGACCTGGTCCGAGAAGGTGAGATTGCCATTCTTGGTGGTATCGAAGAAGAGAGTGATAAACTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179855.2
3UTR TCA 72 bp TATTTCCTTGGTCCACTAAAAGACCAGTTCTCAACCTaGCATCACACTGACTATAACACTGCACACAGCCCG +
Preference number: 3 (lower is better)
Translates to: YFLGPLKDQFST*HHTDYNTAHSP
Trigger: CGGGCTGTGTGCAGTGTTATAGTCAGTGTGATGTCAGGTTGAGAACTGGTCTTTTAGTGGACCAAGGAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR TCA 72 bp GTAAGCTCACCTTTTCAAAGTCAGAGACAACTAAACTaGGGACAGAAACAGCAAACCCTCACATCAAAGCCA +
Preference number: 3 (lower is better)
Translates to: VSSPFQSQRQLN*GQKQQTLTSKP
Trigger: TGGCTTTGATGTGAGGGTTTGCTGTTTCTGTCCTCAGTTTAGTTGTCTCTGACTTTGAAAAGGTGAGCTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp ACACTGGCTGTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTTCCTTTATCTGCCTCTaGGCCTCCCGCAGCCCCTGC +
Preference number: 4 (lower is better)
Translates to: TLAVTDAGSDPDTPGGGRSFICL*ASRSPC
Trigger: GCAGGGGCTGCGGGAGGCGCAGAGGCAGATAAAGGA...ACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR TCA 90 bp CAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTTTCTCGCGGGCTTCCTaGAGCAGCACCTCGGGCTCC +
Preference number: 4 (lower is better)
Translates to: QDWTSTEEPGLSLSSVFTFSRAS*SSTSGS
Trigger: GGAGCCCGAGGTGCTGCTTCAGGAAGCCCGCGAGAA...AGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR TCA 90 bp ACACTGGCTGTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTCCAGTTGTCCACTCATaGGGCACCAGTGTGGAGTGG +
Preference number: 4 (lower is better)
Translates to: TLAVTDAGSDPDTPGGGRPVVHS*GTSVEW
Trigger: CCACTCCACACTGGTGCCTCATGAGTGGACAACTGG...ACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp CACTCAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTCAAGGACTCCATTCCTaGCTGCCGTCTCCTCGGGCG +
Preference number: 4 (lower is better)
Translates to: HSGLDKHRGAWPLAVFCVQGLHS*LPSPRA
Trigger: CGCCCGAGGAGACGGCAGGCAGGAATGGAGTCCTTG...AACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR TCA 90 bp AGAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTTTCTCGCGGGCTTCCTaGAGCAGCACCTCGGGCTCC +
Preference number: 4 (lower is better)
Translates to: RKTSIRSKEGHRPARAASFSRAS*SSTSGS
Trigger: GGAGCCCGAGGTGCTGCTTCAGGAAGCCCGCGAGAA...ACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000103233.10
ENSMUST00000177825.8
ENSMUST00000178893.8
CDS-3UTR GCA 90 bp GATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTTCCCAAGGACTCCATTCCTaGCTGCCGTCTCCTCGGGCG +
Preference number: 4 (lower is better)
Translates to: DAWGLLCTRDLLTLLCSSQGLHS*LPSPRA
Trigger: CGCCCGAGGAGACGGCAGGCAGGAATGGAGTCCTTG...GGAAGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp GACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTTCTGACTCCATTCCTGCCTaGCGTCTCCTCGGGCGCAGA +
Preference number: 4 (lower is better)
Translates to: DWTSTEEPGLSLSSVFTSDSIPA*RLLGRR
Trigger: TCTGCGCCCGAGGAGACGGCAGGCAGGAATGGAGTC...AGAAGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp AAGACTGCACCATTCGTGCTGATGCACACGGCTTGGTCCCGCTGCAGAGATTCGAATGGCAATCTCACCTaGCTCTGCGCCTCCCGCAGC +
Preference number: 4 (lower is better)
Translates to: KTAPFVLMHTAWSRCRDSNGNLT*LCASRS
Trigger: GCTGCGGGAGGCGCAGAGGCAGGTGAGATTGCCATT...CGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178893.8
CDS-3UTR CCA 90 bp CGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACGTGGAGTGGCCTGTCTaGGGAACACTCCAAGGACTC +
Preference number: 4 (lower is better)
Translates to: RASEVKRATGLLEQPVKHVEWPV*GTLQGL
Trigger: GAGTCCTTGGAGTGTTCCCCAGACAGGCCACTCCAC...GTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103233.10
CDS-3UTR TCA 90 bp GGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTATCCTTCTCGCGGGCTTCCTaGAGCAGCACCTCGGGCTCC +
Preference number: 4 (lower is better)
Translates to: GLGIIPEGYISSTAQTVSFSRAS*SSTSGS
Trigger: GGAGCCCGAGGTGCTGCTTCAGGAAGCCCGCGAGAA...GGATACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
CDS-3UTR GCA 90 bp AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTTCCTTTATCTGCCTCTaGGCCTCCCGCAGCCCCTGC +
Preference number: 4 (lower is better)
Translates to: KDAWGLLCTRDLLTLLCSSFICL*ASRSPC
Trigger: GCAGGGGCTGCGGGAGGCGCAGAGGCAGATAAAGGA...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTGACTCCATTCCTGCCTaGCGTCTCCTCGGGCGCAGA +
Preference number: 4 (lower is better)
Translates to: KDAWGLLCTRDLLTLLCSDSIPA*RLLGRR
Trigger: TCTGCGCCCGAGGAGACGGCAGGCAGGAATGGAGTC...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp CGAGGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTATCCTTTATCTGCCTCTaGGCCTCCCGCAGCCCCTGC +
Preference number: 4 (lower is better)
Translates to: RGLGIIPEGYISSTAQTVSFICL*ASRSPC
Trigger: GCAGGGGCTGCGGGAGGCGCAGAGGCAGATAAAGGA...TACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCCTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177825.8
CDS-3UTR TCA 90 bp GAGCTGATGGTCACTCGGAGCTTGGCGTTCCCACCTTCATGGCTGTTAGAAGTTCCAGTTGTCCACTCATaGGGCACCAGTGTGGAGTGG +
Preference number: 4 (lower is better)
Translates to: ELMVTRSLAFPPSWLLEVPVVHS*GTSVEW
Trigger: CCACTCCACACTGGTGCCTCATGAGTGGACAACTGG...AACTTCTAACAGCCATGAAGGTGGGAACGCCAAGCTCCGAGTGACCATCAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103233.10
3UTR CAA 72 bp GACAAAGACTGCACCATTCGTGCTGATGCACACGGCTaGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCT +
Preference number: 4 (lower is better)
Translates to: DKDCTIRADAHG*VPLQRFVAILP
Trigger: AGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTTTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177825.8
ENSMUST00000178893.8
CDS-3UTR TCA 90 bp GATGCACACGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCATCCACCTGTCCAGCTaGATGTGTGAGGCCTTTTTG +
Preference number: 4 (lower is better)
Translates to: DAHGLVPLQRFVAILPFCIHLSS*MCEAFL
Trigger: CAAAAAGGCCTCACACATTCAGCTGGACAGGTGGAT...GCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177825.8
3UTR CAA 72 bp ACCTCCCGGTTATTGGAGCTGATGGTCACTCGGAGCTaGGCGTTCCCACCTTCATGGCTGTTAGAAGTTCCT +
Preference number: 4 (lower is better)
Translates to: TSRLLELMVTRS*AFPPSWLLEVP
Trigger: AGGAACTTCTAACAGCCATGAAGGTGGGAACGCCAAGCTCCGAGTGACCATCAGCTCCAATAACCGGGAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000103233.10
ENSMUST00000177825.8
ENSMUST00000178893.8
CDS-3UTR GCA 90 bp GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGACATTGGGGTCTATGTaGAACACTATGAACTCCGTT +
Preference number: 4 (lower is better)
Translates to: EVKRATGLLEQPVKHHLPTLGSM*NTMNSV
Trigger: AACGGAGTTCATAGTGTTGCACATAGACCCCAATGT...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103233.10
CDS-3UTR CCA 90 bp GAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCCGATACCACCAAGAATaGCAATCTCACCTTCTCGGA +
Preference number: 4 (lower is better)
Translates to: EKRASEVKRATGLLEQPVRYHQE*QSHLLG
Trigger: TCCGAGAAGGTGAGATTGCCATTCTTGGTGGTATCG...GACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103233.10
ENSMUST00000177825.8
CDS-3UTR GCA 90 bp CAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTGCCATTCTGCCTTTCTaGACATACTCCTATACTGTC +
Preference number: 4 (lower is better)
Translates to: QDWTSTEEPGLSLSSVFTAILPF*TYSYTV
Trigger: GACAGTATAGGAGTATGTGCAGAAAGGCAGAATGGC...AGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061283.15
CDS-3UTR TCA 90 bp GAGCTGATGGTCACTCGGAGCTTGGCGTTCCCACCTTCATGGCTGTTAGAAGTTGACATCTCTTGTCTGTaGAGCACTCTCCTTTATCTG +
Preference number: 4 (lower is better)
Translates to: ELMVTRSLAFPPSWLLEVDISCL*STLLYL
Trigger: CAGATAAAGGAGAGTGCTTCACAGACAAGAGATGTC...AACTTCTAACAGCCATGAAGGTGGGAACGCCAAGCTCCGAGTGACCATCAGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103233.10
ENSMUST00000177825.8
CDS-3UTR TCA 90 bp AGGGTAGAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCTATGTGCAACACTATaGACTCCGTTTCAGAACCTA +
Preference number: 4 (lower is better)
Translates to: RVEKRASEVKRATGLLEQLCATL*TPFQNL
Trigger: TAGGTTCTGAAACGGAGTTCATAGTGTTGCACATAG...CTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTCTACCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103233.10
CDS-3UTR TCA 90 bp AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTCTATGTGCAACACTATaGACTCCGTTTCAGAACCTA +
Preference number: 4 (lower is better)
Translates to: KDAWGLLCTRDLLTLLCSLCATL*TPFQNL
Trigger: TAGGTTCTGAAACGGAGTTCATAGTGTTGCACATAG...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp GACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTTCTGATTTGCAGTACATTTaGGGAACTGAAGCCTGTAAT +
Preference number: 4 (lower is better)
Translates to: DWTSTEEPGLSLSSVFTSDLQYI*GTEACN
Trigger: ATTACAGGCTTCAGTTCCGCAAATGTACTGCAAATC...AGAAGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp GATGCACACGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCGTCTTCAAAATGATTTaGAGTACATTTGCGGAACTG +
Preference number: 4 (lower is better)
Translates to: DAHGLVPLQRFVAILPFCVFKMI*STFAEL
Trigger: CAGTTCCGCAAATGTACTGCAAATCATTTTGAAGAC...GCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177825.8
CDS-3UTR GCA 90 bp TCTGTGTCACACTCCAGTAAAAAGATGCTAACACTGGCTGTCACAGATGCTGGCGGAGCCAGAGGTAACTaGAGGCAACTGATTGGTCAT +
Preference number: 4 (lower is better)
Translates to: SVSHSSKKMLTLAVTDAGGARGN*RQLIGH
Trigger: ATGACCAATCAGTTGCCTGCAGTTACCTCTGGCTCC...GCCAGCATCTGTGACAGCCAGTGTTAGCATCTTTTTACTGGAGTGTGACACAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
3UTR CAA 72 bp CTAACACTGCTGTGTTCTTCCAAAAGTAGCTTCACCTaGAGGAATGCAGACCTCTGCCCTCTCTGTGTCACA +
Preference number: 4 (lower is better)
Translates to: LTLLCSSKSSFT*RNADLCPLCVT
Trigger: TGTGACACAGAGAGGGCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTTGGAAGAACACAGCAGTGTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR TCA 90 bp TCCAAAAGTAGCTTCACCTTGAGGAATGCAGACCTCTGCCCTCTCTGTGTCACAGACATCTCTTGTCTGTaGAGCACTCTCCTTTATCTG +
Preference number: 4 (lower is better)
Translates to: SKSSFTLRNADLCPLCVTDISCL*STLLYL
Trigger: CAGATAAAGGAGAGTGCTTCACAGACAAGAGATGTC...TGTGACACAGAGAGGGCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR TCA 90 bp ACACGTGACCTGCTAACACTGCTGTGTTCTTCCAAAAGTAGCTTCACCTTGAGGCTCGGGCGCAGACTCTaGATTGATAATCTACATTGG +
Preference number: 4 (lower is better)
Translates to: TRDLLTLLCSSKSSFTLRLGRRL*IDNLHW
Trigger: CCAATGTAGATTATCAATTCAGAGTCTGCGCCCGAG...CCTCAAGGTGAAGCTACTTTTGGAAGAACACAGCAGTGTTAGCAGGTCACGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CCA 90 bp TGGCCTCTCGCTGTCTTCTGTGTTTACTTCTGGCCTTCAATCTTGATGAAGACTGCGTTCCCACCTTCATaGCTGTTAGAAGTTCCTAGA +
Preference number: 4 (lower is better)
Translates to: WPLAVFCVYFWPSILMKTAFPPS*LLEVPR
Trigger: TCTAGGAACTTCTAACAGCCATGAAGGTGGGAACGC...AGTCTTCATCAAGATTGAAGGCCAGAAGTAAACACAGAAGACAGCGAGAGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061283.15
CDS-3UTR GCA 90 bp CTGCTGTGTTCTTCCAAAAGTAGCTTCACCTTGAGGAATGCAGACCTCTGCCCTGATTTGCAGTACATTTaGGGAACTGAAGCCTGTAAT +
Preference number: 4 (lower is better)
Translates to: LLCSSKSSFTLRNADLCPDLQYI*GTEACN
Trigger: ATTACAGGCTTCAGTTCCGCAAATGTACTGCAAATC...AGGGCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTTGGAAGAACACAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CCA 90 bp CTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTAATGTGGAGTGGCCTGTCTaGGGAACACTCCAAGGACTC +
Preference number: 4 (lower is better)
Translates to: LSSLLTETLQGEPRNIFNVEWPV*GTLQGL
Trigger: GAGTCCTTGGAGTGTTCCCCAGACAGGCCACTCCAC...ATTAAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp TCCAAAAGTAGCTTCACCTTGAGGAATGCAGACCTCTGCCCTCTCTGTGTCACAGTCTTCAAAATGATTTaGAGTACATTTGCGGAACTG +
Preference number: 4 (lower is better)
Translates to: SKSSFTLRNADLCPLCVTVFKMI*STFAEL
Trigger: CAGTTCCGCAAATGTACTGCAAATCATTTTGAAGAC...TGTGACACAGAGAGGGCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CCA 90 bp AGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTAATTTCCTGATGCACACGGCTTaGTCCCGCTGCAGAGATTCG +
Preference number: 4 (lower is better)
Translates to: SSLLTETLQGEPRNIFNFLMHTA*SRCRDS
Trigger: CGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAG...GAAATTAAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061283.15
CDS-3UTR GCA 90 bp TGGCCTCTCGCTGTCTTCTGTGTTTACTTCTGGCCTTCAATCTTGATGAAGACTCTATATTTCTTCGACTaGTCAGACTGTATCCCTCAA +
Preference number: 4 (lower is better)
Translates to: WPLAVFCVYFWPSILMKTLYFFD*SDCIPQ
Trigger: TTGAGGGATACAGTCTGAGCAGTCGAAGAAATATAG...AGTCTTCATCAAGATTGAAGGCCAGAAGTAAACACAGAAGACAGCGAGAGGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp GTGAACCCAGAAACATTTTTAATTTCCGGTGGACAGAGAGGTAAGCTCACCTTTACATTGGGGTCTATGTaGAACACTATGAACTCCGTT +
Preference number: 4 (lower is better)
Translates to: VNPETFLISGGQRGKLTFTLGSM*NTMNSV
Trigger: AACGGAGTTCATAGTGTTGCACATAGACCCCAATGT...AAAGGTGAGCTTACCTCTCTGTCCACCGGAAATTAAAAATGTTTCTGGGTTCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp CAACCAACTTCAGGAAGAACAGTGGAAAAAGTATGCAGACTTTTAAAGCTAGTTGGAGCCAGAGGTAACTaGAGGCAACTGATTGGTCAT +
Preference number: 4 (lower is better)
Translates to: QPTSGRTVEKVCRLLKLVGARGN*RQLIGH
Trigger: ATGACCAATCAGTTGCCTGCAGTTACCTCTGGCTCC...AACTAGCTTTAAAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAGTTGGTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CCA 90 bp TCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTCGATACCACCAAGAATaGCAATCTCACCTTCTCGGA +
Preference number: 4 (lower is better)
Translates to: SLSSLLTETLQGEPRNIFRYHQE*QSHLLG
Trigger: TCCGAGAAGGTGAGATTGCCATTCTTGGTGGTATCG...AAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR TCA 90 bp AGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTAATTTCCTCGGGCGCAGACTCTaGATTGATAATCTACATTGG +
Preference number: 4 (lower is better)
Translates to: SSLLTETLQGEPRNIFNFLGRRL*IDNLHW
Trigger: CCAATGTAGATTATCAATTCAGAGTCTGCGCCCGAG...GAAATTAAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CCA 90 bp AGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTAATTTCCGATACCACCAAGAATaGCAATCTCACCTTCTCGGA +
Preference number: 4 (lower is better)
Translates to: SSLLTETLQGEPRNIFNFRYHQE*QSHLLG
Trigger: TCCGAGAAGGTGAGATTGCCATTCTTGGTGGTATCG...GAAATTAAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp TCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTCTATATTTCTTCGACTaGTCAGACTGTATCCCTCAA +
Preference number: 4 (lower is better)
Translates to: SLSSLLTETLQGEPRNIFLYFFD*SDCIPQ
Trigger: TTGAGGGATACAGTCTGAGCAGTCGAAGAAATATAG...AAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR GCA 90 bp CAACCAACTTCAGGAAGAACAGTGGAAAAAGTATGCAGACTTTTAAAGCTAGTTGTCTTCAAAATGATTTaGAGTACATTTGCGGAACTG +
Preference number: 4 (lower is better)
Translates to: QPTSGRTVEKVCRLLKLVVFKMI*STFAEL
Trigger: CAGTTCCGCAAATGTACTGCAAATCATTTTGAAGAC...AACTAGCTTTAAAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAGTTGGTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CAA 90 bp ACACTGGCTGTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTGCTGATGCACACGGCTaGGTCCCGCTGCAGAGATTC +
Preference number: 5 (lower is better)
Translates to: TLAVTDAGSDPDTPGGGRADAHG*VPLQRF
Trigger: GAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGC...ACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061283.15
CDS-3UTR CAA 90 bp GTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTGGAGAGGGTGCCCACAGAAGTAGGTaGGAGCGCTGGAGTAGAGAA +
Preference number: 5 (lower is better)
Translates to: VTDAGSDPDTPGGGRGEGAHRSR*ERWSRE
Trigger: TTCTCTACTCCAGCGCTCCAACCTACTTCTGTGGGC...ACCCTCTCCACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CAA 90 bp AAGACTGCACCATTCGTGCTGATGCACACGGCTTGGTCCCGCTGCAGAGATTCGAGGTCATCTGCAGTGTaGACCCCATGCTCTATGAGT +
Preference number: 5 (lower is better)
Translates to: KTAPFVLMHTAWSRCRDSRSSAV*TPCSMS
Trigger: ACTCATAGAGCATGGGGTCAACACTGCAGATGACCT...CGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177825.8
CDS-3UTR CAA 90 bp CACTCAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTGGCGCAGACTCTGAATaGATAATCTACATTGGGGTC +
Preference number: 5 (lower is better)
Translates to: HSGLDKHRGAWPLAVFCVGADSE*IIYIGV
Trigger: GACCCCAATGTAGATTATCAATTCAGAGTCTGCGCC...AACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CAA 90 bp CAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTGGCGCAGACTCTGAATaGATAATCTACATTGGGGTC +
Preference number: 5 (lower is better)
Translates to: QDWTSTEEPGLSLSSVFTGADSE*IIYIGV
Trigger: GACCCCAATGTAGATTATCAATTCAGAGTCTGCGCC...AGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CAA 90 bp CTGCTAACACTGCTGTGTTCTTCCAAAAGTAGCTTCACCTTGAGGAATGCAGACAGGTCATCTGCAGTGTaGACCCCATGCTCTATGAGT +
Preference number: 5 (lower is better)
Translates to: LLTLLCSSKSSFTLRNADRSSAV*TPCSMS
Trigger: ACTCATAGAGCATGGGGTCAACACTGCAGATGACCT...GTCTGCATTCCTCAAGGTGAAGCTACTTTTGGAAGAACACAGCAGTGTTAGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CAA 90 bp CATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTAGGTCATCTGCAGTGTaGACCCCATGCTCTATGAGT +
Preference number: 5 (lower is better)
Translates to: HHSAHFLLKPYKVNPETFRSSAV*TPCSMS
Trigger: ACTCATAGAGCATGGGGTCAACACTGCAGATGACCT...AAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CAA 90 bp CAACCAACTTCAGGAAGAACAGTGGAAAAAGTATGCAGACTTTTAAAGCTAGTTGCCCACAGAAGTAGGTaGGAGCGCTGGAGTAGAGAA +
Preference number: 5 (lower is better)
Translates to: QPTSGRTVEKVCRLLKLVAHRSR*ERWSRE
Trigger: TTCTCTACTCCAGCGCTCCAACCTACTTCTGTGGGC...AACTAGCTTTAAAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAGTTGGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CAA 90 bp CATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTCGTCTTCAAAATGATTaGCAGTACATTTGCGGAACT +
Preference number: 5 (lower is better)
Translates to: HHSAHFLLKPYKVNPETFRLQND*QYICGT
Trigger: AGTTCCGCAAATGTACTGCAAATCATTTTGAAGACG...AAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10
CDS-3UTR CAA 90 bp TCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTCGTCTTCAAAATGATTaGCAGTACATTTGCGGAACT +
Preference number: 5 (lower is better)
Translates to: SLSSLLTETLQGEPRNIFRLQND*QYICGT
Trigger: AGTTCCGCAAATGTACTGCAAATCATTTTGAAGACG...AAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061283.15
ENSMUST00000103233.10