Pregenerated sensors for CRLF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017561Ensembl transcript IDs: ENSMUST00000061283.15, ENSMUST00000103233.10, ENSMUST00000177825.8, ENSMUST00000178893.8, ENSMUST00000179855.2
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTGGAGAGGGTaGACACTCAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGC | + |
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Preference number: 1 (lower is better) Translates to: CWLRPRHSRRGTWRG*TLRTGQAPRSLASR Trigger: GCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTGTTCACCCTCTCCACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR GCA 90 bp | CACAGCCCGTGTGCACGGCTGAGGAAAGATGCATGGGGCCTGCTGTaGACACGTGACCTGCTAACACTGCTGTGTTCTTCCAAAAGTAGC | + |
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Preference number: 1 (lower is better) Translates to: HSPCARLRKDAWGLL*TRDLLTLLCSSKSS Trigger: GCTACTTTTGGAAGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTTCCTCAGCCGTGCACACGGGCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR CCA 90 bp | CGTGGAGAGGGTGAACACTCAGGACTGGACAAGCACCGAGGAGCCTaGCCTCTCGCTGTCTTCTGTGTTTACTTCTGGCCTTCAATCTTG | + |
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Preference number: 1 (lower is better) Translates to: RGEGEHSGLDKHRGA*PLAVFCVYFWPSIL Trigger: CAAGATTGAAGGCCAGAAGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTGTTCACCCTCTCCACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR CCA 90 bp | TATAACACTGCACACAGCCCGTGTGCACGGCTGAGGAAAGATGCATaGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCT | + |
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Preference number: 1 (lower is better) Translates to: YNTAHSPCARLRKDA*GLLCTRDLLTLLCS Trigger: AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTTCCTCAGCCGTGCACACGGGCTGTGTGCAGTGTTATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR GCA 90 bp | CACGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTaGACATACTCCTATACTGTCTCTTCGGTCTGGCTGTCCCACAGT | + |
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Preference number: 1 (lower is better) Translates to: HGLVPLQRFVAILPF*TYSYTVSSVWLSHS Trigger: ACTGTGGGACAGCCAGACCGAAGAGACAGTATAGGAGTATGTGCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR GCA 90 bp | ACACTGGCTGTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTACTGGCTGTCACAGATaGTGGCTCAGACCCAGACAC | + |
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Preference number: 2 (lower is better) Translates to: TLAVTDAGSDPDTPGGGRTGCHR*WLRPRH Trigger: GTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGT...ACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR-3UTR GCA 90 bp | GAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCCAAGGACTCCATTCCTaGCTGCCGTCTCCTCGGGCG | + |
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Preference number: 2 (lower is better) Translates to: EKRASEVKRATGLLEQPVQGLHS*LPSPRA Trigger: CGCCCGAGGAGACGGCAGGCAGGAATGGAGTCCTTG...GACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR TCA 90 bp | GTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTGGAGAGGGTCAGAGACAACTAAACTaGGGACAGAAACAGCAAACC | + |
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Preference number: 2 (lower is better) Translates to: VTDAGSDPDTPGGGRGEGQRQLN*GQKQQT Trigger: GGTTTGCTGTTTCTGTCCTCAGTTTAGTTGTCTCTG...ACCCTCTCCACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR-3UTR GCA 90 bp | GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGGGAGCCAGAGGTAACTaGAGGCAACTGATTGGTCAT | + |
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Preference number: 2 (lower is better) Translates to: EVKRATGLLEQPVKHHLPGARGN*RQLIGH Trigger: ATGACCAATCAGTTGCCTGCAGTTACCTCTGGCTCC...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR CCA 90 bp | AGAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTGTGGAGTGGCCTGTCTaGGGAACACTCCAAGGACTC | + |
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Preference number: 2 (lower is better) Translates to: RKTSIRSKEGHRPARAASVEWPV*GTLQGL Trigger: GAGTCCTTGGAGTGTTCCCCAGACAGGCCACTCCAC...ACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR TCA 90 bp | CCAGTGTGGAGTGGCCTGTCTGGGGAACACTCCAAGGACTCCATTCCTGCCTGCCTCGGGCGCAGACTCTaGATTGATAATCTACATTGG | + |
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Preference number: 2 (lower is better) Translates to: PVWSGLSGEHSKDSIPACLGRRL*IDNLHW Trigger: CCAATGTAGATTATCAATTCAGAGTCTGCGCCCGAG...GCAGGCAGGAATGGAGTCCTTGGAGTGTTCCCCAGACAGGCCACTCCACACTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR TCA 90 bp | AAGACTGCACCATTCGTGCTGATGCACACGGCTTGGTCCCGCTGCAGAGATTCGCTCGGGCGCAGACTCTaGATTGATAATCTACATTGG | + |
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Preference number: 2 (lower is better) Translates to: KTAPFVLMHTAWSRCRDSLGRRL*IDNLHW Trigger: CCAATGTAGATTATCAATTCAGAGTCTGCGCCCGAG...CGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR TCA 90 bp | GATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTTCCGACCAGTTCTCAACCTaGCATCACACTGACTATAAC | + |
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Preference number: 2 (lower is better) Translates to: DAWGLLCTRDLLTLLCSSDQFST*HHTDYN Trigger: GTTATAGTCAGTGTGATGTCAGGTTGAGAACTGGTC...GGAAGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR-3UTR GCA 90 bp | GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGGATTTGCAGTACATTTaGGGAACTGAAGCCTGTAAT | + |
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Preference number: 2 (lower is better) Translates to: EVKRATGLLEQPVKHHLPDLQYI*GTEACN Trigger: ATTACAGGCTTCAGTTCCGCAAATGTACTGCAAATC...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178893.8 |
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| 3UTR CAA 90 bp | TTTTCCATTGACAAAGACTGCACCATTCGTGCTGATGCACACGGCTaGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCACA | + |
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Preference number: 2 (lower is better) Translates to: FSIDKDCTIRADAHG*VPLQRFVAILPFCT Trigger: TGTGCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTTTGTCAATGGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR GCA 90 bp | ACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACAACATTGGGGTCTATGTaGAACACTATGAACTCCGTT | + |
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Preference number: 2 (lower is better) Translates to: TSIRSKEGHRPARAASQTTLGSM*NTMNSV Trigger: AACGGAGTTCATAGTGTTGCACATAGACCCCAATGT...TGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR GCA 90 bp | GATGCACACGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCCTATATTTCTTCGACTaGTCAGACTGTATCCCTCAA | + |
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Preference number: 2 (lower is better) Translates to: DAHGLVPLQRFVAILPFCLYFFD*SDCIPQ Trigger: TTGAGGGATACAGTCTGAGCAGTCGAAGAAATATAG...GCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR CCA 90 bp | GGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTATCCGCGTTCCCACCTTCATaGCTGTTAGAAGTTCCTAGA | + |
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Preference number: 2 (lower is better) Translates to: GLGIIPEGYISSTAQTVSAFPPS*LLEVPR Trigger: TCTAGGAACTTCTAACAGCCATGAAGGTGGGAACGC...GGATACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR CCA 90 bp | CGAGGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTAGCGTTCCCACCTTCATaGCTGTTAGAAGTTCCTAGA | + |
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Preference number: 2 (lower is better) Translates to: RGLGIIPEGYISSTAQTVAFPPS*LLEVPR Trigger: TCTAGGAACTTCTAACAGCCATGAAGGTGGGAACGC...TACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCCTCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR GCA 90 bp | GAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCGTCTTCAAAATGATTTaGAGTACATTTGCGGAACTG | + |
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Preference number: 2 (lower is better) Translates to: EKRASEVKRATGLLEQPVVFKMI*STFAEL Trigger: CAGTTCCGCAAATGTACTGCAAATCATTTTGAAGAC...GACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178893.8 |
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| 3UTR-3UTR GCA 90 bp | CGAGGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTAACATTGGGGTCTATGTaGAACACTATGAACTCCGTT | + |
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Preference number: 2 (lower is better) Translates to: RGLGIIPEGYISSTAQTVTLGSM*NTMNSV Trigger: AACGGAGTTCATAGTGTTGCACATAGACCCCAATGT...TACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCCTCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTCTTCAGGAAGAACAGTaGAAAAAGTATGCAGACTTT | + |
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Preference number: 2 (lower is better) Translates to: KDAWGLLCTRDLLTLLCSLQEEQ*KKYADF Trigger: AAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAG...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR-3UTR CCA 90 bp | TTGTCCACATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAGCGTTCCCACCTTCATaGCTGTTAGAAGTTCCTAGA | + |
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Preference number: 2 (lower is better) Translates to: LSTSLSSLLTETLQGEPRAFPPS*LLEVPR Trigger: TCTAGGAACTTCTAACAGCCATGAAGGTGGGAACGC...TCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATGTGGACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103233.10 |
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| 3UTR-3UTR TCA 90 bp | CATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTCAGAGACAACTAAACTaGGGACAGAAACAGCAAACC | + |
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Preference number: 2 (lower is better) Translates to: HHSAHFLLKPYKVNPETFQRQLN*GQKQQT Trigger: GGTTTGCTGTTTCTGTCCTCAGTTTAGTTGTCTCTG...AAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR-3UTR CCA 90 bp | CATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTCTTCAGGAAGAACAGTaGAAAAAGTATGCAGACTTT | + |
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Preference number: 2 (lower is better) Translates to: HHSAHFLLKPYKVNPETFLQEEQ*KKYADF Trigger: AAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAG...AAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR CCA 72 bp | GCACACAGCCCGTGTGCACGGCTGAGGAAAGATGCATaGGGCCTGCTGTGCACACGTGACCTGCTAACACTG | + |
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Preference number: 3 (lower is better) Translates to: AHSPCARLRKDA*GLLCTRDLLTL Trigger: CAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTTCCTCAGCCGTGCACACGGGCTGTGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR-3UTR CAA 90 bp | GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGGCCCACAGAAGTAGGTaGGAGCGCTGGAGTAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: EVKRATGLLEQPVKHHLPAHRSR*ERWSRE Trigger: TTCTCTACTCCAGCGCTCCAACCTACTTCTGTGGGC...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR GCA 72 bp | TGTGCACGGCTGAGGAAAGATGCATGGGGCCTGCTGTaGACACGTGACCTGCTAACACTGCTGTGTTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: CARLRKDAWGLL*TRDLLTLLCSS Trigger: GGAAGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTTCCTCAGCCGTGCACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR CCA 72 bp | GGTGAACACTCAGGACTGGACAAGCACCGAGGAGCCTaGCCTCTCGCTGTCTTCTGTGTTTACTTCTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: GEHSGLDKHRGA*PLAVFCVYFWP Trigger: AGGCCAGAAGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTGTTCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR-3UTR CAA 90 bp | GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGAAAAGTAGCTTCACCTaGAGGAATGCAGACCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: EVKRATGLLEQPVKHHLPKSSFT*RNADLC Trigger: GCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTT...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103233.10 |
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| 3UTR GCA 72 bp | GTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTaGACATACTCCTATACTGTCTCTTCGGTCTGGCTG | + |
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Preference number: 3 (lower is better) Translates to: VPLQRFVAILPF*TYSYTVSSVWL Trigger: CAGCCAGACCGAAGAGACAGTATAGGAGTATGTGCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR CAA 90 bp | AGAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTGGCGCAGACTCTGAATaGATAATCTACATTGGGGTC | + |
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Preference number: 3 (lower is better) Translates to: RKTSIRSKEGHRPARAASGADSE*IIYIGV Trigger: GACCCCAATGTAGATTATCAATTCAGAGTCTGCGCC...ACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| 3UTR-3UTR CAA 90 bp | AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTAAAAGTAGCTTCACCTaGAGGAATGCAGACCTCTGC | + |
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Preference number: 3 (lower is better) Translates to: KDAWGLLCTRDLLTLLCSKSSFT*RNADLC Trigger: GCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTT...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR-3UTR CAA 90 bp | CGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCACATACTCCGTCTTCAAAATGATTaGCAGTACATTTGCGGAACT | + |
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Preference number: 3 (lower is better) Translates to: RLGPAAEIRSHSAFLHILRLQND*QYICGT Trigger: AGTTCCGCAAATGTACTGCAAATCATTTTGAAGACG...GAGTATGTGCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178893.8 |
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| 3UTR CCA 72 bp | ACAGTTTATCACTCTCTTCTTCGATACCACCAAGAATaGCAATCTCACCTTCTCGGACCAGGTCATCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: TVYHSLLRYHQE*QSHLLGPGHLQ Trigger: CTGCAGATGACCTGGTCCGAGAAGGTGAGATTGCCATTCTTGGTGGTATCGAAGAAGAGAGTGATAAACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000179855.2 |
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| 3UTR TCA 72 bp | TATTTCCTTGGTCCACTAAAAGACCAGTTCTCAACCTaGCATCACACTGACTATAACACTGCACACAGCCCG | + |
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Preference number: 3 (lower is better) Translates to: YFLGPLKDQFST*HHTDYNTAHSP Trigger: CGGGCTGTGTGCAGTGTTATAGTCAGTGTGATGTCAGGTTGAGAACTGGTCTTTTAGTGGACCAAGGAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| 3UTR TCA 72 bp | GTAAGCTCACCTTTTCAAAGTCAGAGACAACTAAACTaGGGACAGAAACAGCAAACCCTCACATCAAAGCCA | + |
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Preference number: 3 (lower is better) Translates to: VSSPFQSQRQLN*GQKQQTLTSKP Trigger: TGGCTTTGATGTGAGGGTTTGCTGTTTCTGTCCTCAGTTTAGTTGTCTCTGACTTTGAAAAGGTGAGCTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| CDS-3UTR GCA 90 bp | ACACTGGCTGTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTTCCTTTATCTGCCTCTaGGCCTCCCGCAGCCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: TLAVTDAGSDPDTPGGGRSFICL*ASRSPC Trigger: GCAGGGGCTGCGGGAGGCGCAGAGGCAGATAAAGGA...ACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| CDS-3UTR TCA 90 bp | CAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTTTCTCGCGGGCTTCCTaGAGCAGCACCTCGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: QDWTSTEEPGLSLSSVFTFSRAS*SSTSGS Trigger: GGAGCCCGAGGTGCTGCTTCAGGAAGCCCGCGAGAA...AGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| CDS-3UTR TCA 90 bp | ACACTGGCTGTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTCCAGTTGTCCACTCATaGGGCACCAGTGTGGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: TLAVTDAGSDPDTPGGGRPVVHS*GTSVEW Trigger: CCACTCCACACTGGTGCCTCATGAGTGGACAACTGG...ACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| CDS-3UTR GCA 90 bp | CACTCAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTCAAGGACTCCATTCCTaGCTGCCGTCTCCTCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: HSGLDKHRGAWPLAVFCVQGLHS*LPSPRA Trigger: CGCCCGAGGAGACGGCAGGCAGGAATGGAGTCCTTG...AACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| CDS-3UTR TCA 90 bp | AGAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTTTCTCGCGGGCTTCCTaGAGCAGCACCTCGGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: RKTSIRSKEGHRPARAASFSRAS*SSTSGS Trigger: GGAGCCCGAGGTGCTGCTTCAGGAAGCCCGCGAGAA...ACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000103233.10 ENSMUST00000177825.8 ENSMUST00000178893.8 |
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| CDS-3UTR GCA 90 bp | GATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTTCCCAAGGACTCCATTCCTaGCTGCCGTCTCCTCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: DAWGLLCTRDLLTLLCSSQGLHS*LPSPRA Trigger: CGCCCGAGGAGACGGCAGGCAGGAATGGAGTCCTTG...GGAAGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| CDS-3UTR GCA 90 bp | GACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTTCTGACTCCATTCCTGCCTaGCGTCTCCTCGGGCGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: DWTSTEEPGLSLSSVFTSDSIPA*RLLGRR Trigger: TCTGCGCCCGAGGAGACGGCAGGCAGGAATGGAGTC...AGAAGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | AAGACTGCACCATTCGTGCTGATGCACACGGCTTGGTCCCGCTGCAGAGATTCGAATGGCAATCTCACCTaGCTCTGCGCCTCCCGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KTAPFVLMHTAWSRCRDSNGNLT*LCASRS Trigger: GCTGCGGGAGGCGCAGAGGCAGGTGAGATTGCCATT...CGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178893.8 |
||
| CDS-3UTR CCA 90 bp | CGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACGTGGAGTGGCCTGTCTaGGGAACACTCCAAGGACTC | + |
|
Preference number: 4 (lower is better) Translates to: RASEVKRATGLLEQPVKHVEWPV*GTLQGL Trigger: GAGTCCTTGGAGTGTTCCCCAGACAGGCCACTCCAC...GTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103233.10 |
||
| CDS-3UTR TCA 90 bp | GGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTATCCTTCTCGCGGGCTTCCTaGAGCAGCACCTCGGGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: GLGIIPEGYISSTAQTVSFSRAS*SSTSGS Trigger: GGAGCCCGAGGTGCTGCTTCAGGAAGCCCGCGAGAA...GGATACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
||
| CDS-3UTR GCA 90 bp | AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTTCCTTTATCTGCCTCTaGGCCTCCCGCAGCCCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: KDAWGLLCTRDLLTLLCSSFICL*ASRSPC Trigger: GCAGGGGCTGCGGGAGGCGCAGAGGCAGATAAAGGA...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTGACTCCATTCCTGCCTaGCGTCTCCTCGGGCGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: KDAWGLLCTRDLLTLLCSDSIPA*RLLGRR Trigger: TCTGCGCCCGAGGAGACGGCAGGCAGGAATGGAGTC...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | CGAGGACTCGGCATCATTCCGGAGGGCTATATTTCTTCGACTGCTCAGACTGTATCCTTTATCTGCCTCTaGGCCTCCCGCAGCCCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: RGLGIIPEGYISSTAQTVSFICL*ASRSPC Trigger: GCAGGGGCTGCGGGAGGCGCAGAGGCAGATAAAGGA...TACAGTCTGAGCAGTCGAAGAAATATAGCCCTCCGGAATGATGCCGAGTCCTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177825.8 |
||
| CDS-3UTR TCA 90 bp | GAGCTGATGGTCACTCGGAGCTTGGCGTTCCCACCTTCATGGCTGTTAGAAGTTCCAGTTGTCCACTCATaGGGCACCAGTGTGGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: ELMVTRSLAFPPSWLLEVPVVHS*GTSVEW Trigger: CCACTCCACACTGGTGCCTCATGAGTGGACAACTGG...AACTTCTAACAGCCATGAAGGTGGGAACGCCAAGCTCCGAGTGACCATCAGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103233.10 |
||
| 3UTR CAA 72 bp | GACAAAGACTGCACCATTCGTGCTGATGCACACGGCTaGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: DKDCTIRADAHG*VPLQRFVAILP Trigger: AGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTTTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000177825.8 ENSMUST00000178893.8 |
||
| CDS-3UTR TCA 90 bp | GATGCACACGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCATCCACCTGTCCAGCTaGATGTGTGAGGCCTTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: DAHGLVPLQRFVAILPFCIHLSS*MCEAFL Trigger: CAAAAAGGCCTCACACATTCAGCTGGACAGGTGGAT...GCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177825.8 |
||
| 3UTR CAA 72 bp | ACCTCCCGGTTATTGGAGCTGATGGTCACTCGGAGCTaGGCGTTCCCACCTTCATGGCTGTTAGAAGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: TSRLLELMVTRS*AFPPSWLLEVP Trigger: AGGAACTTCTAACAGCCATGAAGGTGGGAACGCCAAGCTCCGAGTGACCATCAGCTCCAATAACCGGGAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103233.10 ENSMUST00000177825.8 ENSMUST00000178893.8 |
||
| CDS-3UTR GCA 90 bp | GAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCAAACACCACCTCCCGACATTGGGGTCTATGTaGAACACTATGAACTCCGTT | + |
|
Preference number: 4 (lower is better) Translates to: EVKRATGLLEQPVKHHLPTLGSM*NTMNSV Trigger: AACGGAGTTCATAGTGTTGCACATAGACCCCAATGT...CGGGAGGTGGTGTTTGACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103233.10 |
||
| CDS-3UTR CCA 90 bp | GAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCCAGTCCGATACCACCAAGAATaGCAATCTCACCTTCTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: EKRASEVKRATGLLEQPVRYHQE*QSHLLG Trigger: TCCGAGAAGGTGAGATTGCCATTCTTGGTGGTATCG...GACTGGCTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000103233.10 ENSMUST00000177825.8 |
||
| CDS-3UTR GCA 90 bp | CAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTGCCATTCTGCCTTTCTaGACATACTCCTATACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: QDWTSTEEPGLSLSSVFTAILPF*TYSYTV Trigger: GACAGTATAGGAGTATGTGCAGAAAGGCAGAATGGC...AGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061283.15 |
||
| CDS-3UTR TCA 90 bp | GAGCTGATGGTCACTCGGAGCTTGGCGTTCCCACCTTCATGGCTGTTAGAAGTTGACATCTCTTGTCTGTaGAGCACTCTCCTTTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: ELMVTRSLAFPPSWLLEVDISCL*STLLYL Trigger: CAGATAAAGGAGAGTGCTTCACAGACAAGAGATGTC...AACTTCTAACAGCCATGAAGGTGGGAACGCCAAGCTCCGAGTGACCATCAGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103233.10 ENSMUST00000177825.8 |
||
| CDS-3UTR TCA 90 bp | AGGGTAGAAAAACGAGCATCCGAAGTAAAGAGGGCCACAGGCCTGCTCGAGCAGCTATGTGCAACACTATaGACTCCGTTTCAGAACCTA | + |
|
Preference number: 4 (lower is better) Translates to: RVEKRASEVKRATGLLEQLCATL*TPFQNL Trigger: TAGGTTCTGAAACGGAGTTCATAGTGTTGCACATAG...CTGCTCGAGCAGGCCTGTGGCCCTCTTTACTTCGGATGCTCGTTTTTCTACCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103233.10 |
||
| CDS-3UTR TCA 90 bp | AAAGATGCATGGGGCCTGCTGTGCACACGTGACCTGCTAACACTGCTGTGTTCTCTATGTGCAACACTATaGACTCCGTTTCAGAACCTA | + |
|
Preference number: 4 (lower is better) Translates to: KDAWGLLCTRDLLTLLCSLCATL*TPFQNL Trigger: TAGGTTCTGAAACGGAGTTCATAGTGTTGCACATAG...AGAACACAGCAGTGTTAGCAGGTCACGTGTGCACAGCAGGCCCCATGCATCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | GACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTTCTGATTTGCAGTACATTTaGGGAACTGAAGCCTGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: DWTSTEEPGLSLSSVFTSDLQYI*GTEACN Trigger: ATTACAGGCTTCAGTTCCGCAAATGTACTGCAAATC...AGAAGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | GATGCACACGGCTTGGTCCCGCTGCAGAGATTCGTAGCCATTCTGCCTTTCTGCGTCTTCAAAATGATTTaGAGTACATTTGCGGAACTG | + |
|
Preference number: 4 (lower is better) Translates to: DAHGLVPLQRFVAILPFCVFKMI*STFAEL Trigger: CAGTTCCGCAAATGTACTGCAAATCATTTTGAAGAC...GCAGAAAGGCAGAATGGCTACGAATCTCTGCAGCGGGACCAAGCCGTGTGCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177825.8 |
||
| CDS-3UTR GCA 90 bp | TCTGTGTCACACTCCAGTAAAAAGATGCTAACACTGGCTGTCACAGATGCTGGCGGAGCCAGAGGTAACTaGAGGCAACTGATTGGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: SVSHSSKKMLTLAVTDAGGARGN*RQLIGH Trigger: ATGACCAATCAGTTGCCTGCAGTTACCTCTGGCTCC...GCCAGCATCTGTGACAGCCAGTGTTAGCATCTTTTTACTGGAGTGTGACACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| 3UTR CAA 72 bp | CTAACACTGCTGTGTTCTTCCAAAAGTAGCTTCACCTaGAGGAATGCAGACCTCTGCCCTCTCTGTGTCACA | + |
|
Preference number: 4 (lower is better) Translates to: LTLLCSSKSSFT*RNADLCPLCVT Trigger: TGTGACACAGAGAGGGCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTTGGAAGAACACAGCAGTGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR TCA 90 bp | TCCAAAAGTAGCTTCACCTTGAGGAATGCAGACCTCTGCCCTCTCTGTGTCACAGACATCTCTTGTCTGTaGAGCACTCTCCTTTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: SKSSFTLRNADLCPLCVTDISCL*STLLYL Trigger: CAGATAAAGGAGAGTGCTTCACAGACAAGAGATGTC...TGTGACACAGAGAGGGCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR TCA 90 bp | ACACGTGACCTGCTAACACTGCTGTGTTCTTCCAAAAGTAGCTTCACCTTGAGGCTCGGGCGCAGACTCTaGATTGATAATCTACATTGG | + |
|
Preference number: 4 (lower is better) Translates to: TRDLLTLLCSSKSSFTLRLGRRL*IDNLHW Trigger: CCAATGTAGATTATCAATTCAGAGTCTGCGCCCGAG...CCTCAAGGTGAAGCTACTTTTGGAAGAACACAGCAGTGTTAGCAGGTCACGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CCA 90 bp | TGGCCTCTCGCTGTCTTCTGTGTTTACTTCTGGCCTTCAATCTTGATGAAGACTGCGTTCCCACCTTCATaGCTGTTAGAAGTTCCTAGA | + |
|
Preference number: 4 (lower is better) Translates to: WPLAVFCVYFWPSILMKTAFPPS*LLEVPR Trigger: TCTAGGAACTTCTAACAGCCATGAAGGTGGGAACGC...AGTCTTCATCAAGATTGAAGGCCAGAAGTAAACACAGAAGACAGCGAGAGGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061283.15 |
||
| CDS-3UTR GCA 90 bp | CTGCTGTGTTCTTCCAAAAGTAGCTTCACCTTGAGGAATGCAGACCTCTGCCCTGATTTGCAGTACATTTaGGGAACTGAAGCCTGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: LLCSSKSSFTLRNADLCPDLQYI*GTEACN Trigger: ATTACAGGCTTCAGTTCCGCAAATGTACTGCAAATC...AGGGCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTTGGAAGAACACAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CCA 90 bp | CTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTAATGTGGAGTGGCCTGTCTaGGGAACACTCCAAGGACTC | + |
|
Preference number: 4 (lower is better) Translates to: LSSLLTETLQGEPRNIFNVEWPV*GTLQGL Trigger: GAGTCCTTGGAGTGTTCCCCAGACAGGCCACTCCAC...ATTAAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | TCCAAAAGTAGCTTCACCTTGAGGAATGCAGACCTCTGCCCTCTCTGTGTCACAGTCTTCAAAATGATTTaGAGTACATTTGCGGAACTG | + |
|
Preference number: 4 (lower is better) Translates to: SKSSFTLRNADLCPLCVTVFKMI*STFAEL Trigger: CAGTTCCGCAAATGTACTGCAAATCATTTTGAAGAC...TGTGACACAGAGAGGGCAGAGGTCTGCATTCCTCAAGGTGAAGCTACTTTTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CCA 90 bp | AGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTAATTTCCTGATGCACACGGCTTaGTCCCGCTGCAGAGATTCG | + |
|
Preference number: 4 (lower is better) Translates to: SSLLTETLQGEPRNIFNFLMHTA*SRCRDS Trigger: CGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAG...GAAATTAAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061283.15 |
||
| CDS-3UTR GCA 90 bp | TGGCCTCTCGCTGTCTTCTGTGTTTACTTCTGGCCTTCAATCTTGATGAAGACTCTATATTTCTTCGACTaGTCAGACTGTATCCCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: WPLAVFCVYFWPSILMKTLYFFD*SDCIPQ Trigger: TTGAGGGATACAGTCTGAGCAGTCGAAGAAATATAG...AGTCTTCATCAAGATTGAAGGCCAGAAGTAAACACAGAAGACAGCGAGAGGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | GTGAACCCAGAAACATTTTTAATTTCCGGTGGACAGAGAGGTAAGCTCACCTTTACATTGGGGTCTATGTaGAACACTATGAACTCCGTT | + |
|
Preference number: 4 (lower is better) Translates to: VNPETFLISGGQRGKLTFTLGSM*NTMNSV Trigger: AACGGAGTTCATAGTGTTGCACATAGACCCCAATGT...AAAGGTGAGCTTACCTCTCTGTCCACCGGAAATTAAAAATGTTTCTGGGTTCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | CAACCAACTTCAGGAAGAACAGTGGAAAAAGTATGCAGACTTTTAAAGCTAGTTGGAGCCAGAGGTAACTaGAGGCAACTGATTGGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: QPTSGRTVEKVCRLLKLVGARGN*RQLIGH Trigger: ATGACCAATCAGTTGCCTGCAGTTACCTCTGGCTCC...AACTAGCTTTAAAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAGTTGGTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CCA 90 bp | TCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTCGATACCACCAAGAATaGCAATCTCACCTTCTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: SLSSLLTETLQGEPRNIFRYHQE*QSHLLG Trigger: TCCGAGAAGGTGAGATTGCCATTCTTGGTGGTATCG...AAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR TCA 90 bp | AGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTAATTTCCTCGGGCGCAGACTCTaGATTGATAATCTACATTGG | + |
|
Preference number: 4 (lower is better) Translates to: SSLLTETLQGEPRNIFNFLGRRL*IDNLHW Trigger: CCAATGTAGATTATCAATTCAGAGTCTGCGCCCGAG...GAAATTAAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CCA 90 bp | AGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTAATTTCCGATACCACCAAGAATaGCAATCTCACCTTCTCGGA | + |
|
Preference number: 4 (lower is better) Translates to: SSLLTETLQGEPRNIFNFRYHQE*QSHLLG Trigger: TCCGAGAAGGTGAGATTGCCATTCTTGGTGGTATCG...GAAATTAAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | TCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTCTATATTTCTTCGACTaGTCAGACTGTATCCCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: SLSSLLTETLQGEPRNIFLYFFD*SDCIPQ Trigger: TTGAGGGATACAGTCTGAGCAGTCGAAGAAATATAG...AAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR GCA 90 bp | CAACCAACTTCAGGAAGAACAGTGGAAAAAGTATGCAGACTTTTAAAGCTAGTTGTCTTCAAAATGATTTaGAGTACATTTGCGGAACTG | + |
|
Preference number: 4 (lower is better) Translates to: QPTSGRTVEKVCRLLKLVVFKMI*STFAEL Trigger: CAGTTCCGCAAATGTACTGCAAATCATTTTGAAGAC...AACTAGCTTTAAAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAGTTGGTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CAA 90 bp | ACACTGGCTGTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTGCTGATGCACACGGCTaGGTCCCGCTGCAGAGATTC | + |
|
Preference number: 5 (lower is better) Translates to: TLAVTDAGSDPDTPGGGRADAHG*VPLQRF Trigger: GAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGC...ACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGACAGCCAGTGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061283.15 |
||
| CDS-3UTR CAA 90 bp | GTCACAGATGCTGGCTCAGACCCAGACACTCCCGGAGGGGGACGTGGAGAGGGTGCCCACAGAAGTAGGTaGGAGCGCTGGAGTAGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: VTDAGSDPDTPGGGRGEGAHRSR*ERWSRE Trigger: TTCTCTACTCCAGCGCTCCAACCTACTTCTGTGGGC...ACCCTCTCCACGTCCCCCTCCGGGAGTGTCTGGGTCTGAGCCAGCATCTGTGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CAA 90 bp | AAGACTGCACCATTCGTGCTGATGCACACGGCTTGGTCCCGCTGCAGAGATTCGAGGTCATCTGCAGTGTaGACCCCATGCTCTATGAGT | + |
|
Preference number: 5 (lower is better) Translates to: KTAPFVLMHTAWSRCRDSRSSAV*TPCSMS Trigger: ACTCATAGAGCATGGGGTCAACACTGCAGATGACCT...CGAATCTCTGCAGCGGGACCAAGCCGTGTGCATCAGCACGAATGGTGCAGTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177825.8 |
||
| CDS-3UTR CAA 90 bp | CACTCAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTGGCGCAGACTCTGAATaGATAATCTACATTGGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: HSGLDKHRGAWPLAVFCVGADSE*IIYIGV Trigger: GACCCCAATGTAGATTATCAATTCAGAGTCTGCGCC...AACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTGAGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CAA 90 bp | CAGGACTGGACAAGCACCGAGGAGCCTGGCCTCTCGCTGTCTTCTGTGTTTACTGGCGCAGACTCTGAATaGATAATCTACATTGGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: QDWTSTEEPGLSLSSVFTGADSE*IIYIGV Trigger: GACCCCAATGTAGATTATCAATTCAGAGTCTGCGCC...AGTAAACACAGAAGACAGCGAGAGGCCAGGCTCCTCGGTGCTTGTCCAGTCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CAA 90 bp | CTGCTAACACTGCTGTGTTCTTCCAAAAGTAGCTTCACCTTGAGGAATGCAGACAGGTCATCTGCAGTGTaGACCCCATGCTCTATGAGT | + |
|
Preference number: 5 (lower is better) Translates to: LLTLLCSSKSSFTLRNADRSSAV*TPCSMS Trigger: ACTCATAGAGCATGGGGTCAACACTGCAGATGACCT...GTCTGCATTCCTCAAGGTGAAGCTACTTTTGGAAGAACACAGCAGTGTTAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CAA 90 bp | CATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTAGGTCATCTGCAGTGTaGACCCCATGCTCTATGAGT | + |
|
Preference number: 5 (lower is better) Translates to: HHSAHFLLKPYKVNPETFRSSAV*TPCSMS Trigger: ACTCATAGAGCATGGGGTCAACACTGCAGATGACCT...AAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CAA 90 bp | CAACCAACTTCAGGAAGAACAGTGGAAAAAGTATGCAGACTTTTAAAGCTAGTTGCCCACAGAAGTAGGTaGGAGCGCTGGAGTAGAGAA | + |
|
Preference number: 5 (lower is better) Translates to: QPTSGRTVEKVCRLLKLVAHRSR*ERWSRE Trigger: TTCTCTACTCCAGCGCTCCAACCTACTTCTGTGGGC...AACTAGCTTTAAAAGTCTGCATACTTTTTCCACTGTTCTTCCTGAAGTTGGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
||
| CDS-3UTR CAA 90 bp | CATCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTCGTCTTCAAAATGATTaGCAGTACATTTGCGGAACT | + |
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Preference number: 5 (lower is better) Translates to: HHSAHFLLKPYKVNPETFRLQND*QYICGT Trigger: AGTTCCGCAAATGTACTGCAAATCATTTTGAAGACG...AAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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| CDS-3UTR CAA 90 bp | TCACTCAGCTCACTTCTTACTGAAACCTTACAAGGTGAACCCAGAAACATTTTTCGTCTTCAAAATGATTaGCAGTACATTTGCGGAACT | + |
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Preference number: 5 (lower is better) Translates to: SLSSLLTETLQGEPRNIFRLQND*QYICGT Trigger: AGTTCCGCAAATGTACTGCAAATCATTTTGAAGACG...AAAAATGTTTCTGGGTTCACCTTGTAAGGTTTCAGTAAGAAGTGAGCTGAGTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000061283.15 ENSMUST00000103233.10 |
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