Pregenerated sensors for CRLF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033467Ensembl transcript IDs: ENSMUST00000044579.12, ENSMUST00000198960.2, ENSMUST00000200284.5
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGTGACGCCTCCGTCGCGCAGTaGCAGCTCCAGCAGCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: IQTGTGFVSLNYLKTGSDASVAQ*QLQQPR Trigger: GCGGGGCTGCTGGAGCTGGCACTGCGCGACGGAGGC...GTCACTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR GCA 90 bp | GACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGGCCTCCGTCGCGCAGTaGCAGCTCCAGCAGCCCCGC | + |
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Preference number: 4 (lower is better) Translates to: DHICIQTGTGFVSLNYLKASVAQ*QLQQPR Trigger: GCGGGGCTGCTGGAGCTGGCACTGCGCGACGGAGGC...CTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | TATTTGAATATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTCTCCTCGGTCCTGGCTaGCGGGGCTGTGGCCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: YLNICDHICIQTGTGFVSLLGPG*RGCGLG Trigger: GCCCAGGCCACAGCCCCGCCAGCCAGGACCGAGGAG...ACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAATATTCAAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | TGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGTCTCCTCGGTCCTGGCTaGCGGGGCTGTGGCCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: CIQTGTGFVSLNYLKTGSLLGPG*RGCGLG Trigger: GCCCAGGCCACAGCCCCGCCAGCCAGGACCGAGGAG...ACTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | GACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGCTCCTCGGTCCTGGCTaGCGGGGCTGTGGCCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: DHICIQTGTGFVSLNYLKLLGPG*RGCGLG Trigger: GCCCAGGCCACAGCCCCGCCAGCCAGGACCGAGGAG...CTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR TCA 90 bp | TTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGTGTGACATCACCCCGTaGCGTCACCGCCGCCGCCGC | + |
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Preference number: 4 (lower is better) Translates to: LHTDRHRICEFELFKDRKCDITP*RHRRRR Trigger: GCGGCGGCGGCGGTGACGTCACGGGGTGATGTCACA...CTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044579.12 |
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| CDS-3UTR TCA 90 bp | CATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGGGCCCGAGCCCCACGTaGCCTCCACCGTCTCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: HLHTDRHRICEFELFKDRGPSPT*PPPSPG Trigger: ACCTGGAGACGGTGGAGGTCACGTGGGGCTCGGGCC...CCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR TCA 90 bp | TGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGTGGCCCGAGCCCCACGTaGCCTCCACCGTCTCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: CIQTGTGFVSLNYLKTGSGPSPT*PPPSPG Trigger: ACCTGGAGACGGTGGAGGTCACGTGGGGCTCGGGCC...ACTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | ATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGTGACCTCAAGTTGGCGCCGTaGTGGTCGGGGCCCGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: IQTGTGFVSLNYLKTGSDLKLAP*WSGPEP Trigger: GGGCTCGGGCCCCGACCACCACGGCGCCAACTTGAG...GTCACTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | AATATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTGGCTGGCGGGGCTGTaGCCTGGGCGTCCGCAATCC | + |
|
Preference number: 4 (lower is better) Translates to: NICDHICIQTGTGFVSLNWLAGL*PGRPQS Trigger: GGATTGCGGACGCCCAGGCCACAGCCCCGCCAGCCA...ATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAATATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | TGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGTGCCTCCCGGCCCCCTTaGCTCGAAGCTGGGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: CIQTGTGFVSLNYLKTGSASRPP*LEAGWP Trigger: AGGCCACCCAGCTTCGAGCCAAGGGGGCCGGGAGGC...ACTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | ATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGTGACGCCTCCCGGCCCCCTTaGCTCGAAGCTGGGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: IQTGTGFVSLNYLKTGSDASRPP*LEAGWP Trigger: AGGCCACCCAGCTTCGAGCCAAGGGGGCCGGGAGGC...GTCACTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | TTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGGCCTCCCGGCCCCCTTaGCTCGAAGCTGGGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: LHTDRHRICEFELFKDRKASRPP*LEAGWP Trigger: AGGCCACCCAGCTTCGAGCCAAGGGGGCCGGGAGGC...CTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR TCA 90 bp | GACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGGTCACAGCAGGGCCCTaGGGTCGTCTGCCAGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: DHICIQTGTGFVSLNYLKVTAGP*GRLPGV Trigger: GACGCCTGGCAGACGACCTCAGGGCCCTGCTGTGAC...CTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR TCA 90 bp | TATTTGAATATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTGTCACAGCAGGGCCCTaGGGTCGTCTGCCAGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: YLNICDHICIQTGTGFVSVTAGP*GRLPGV Trigger: GACGCCTGGCAGACGACCTCAGGGCCCTGCTGTGAC...ACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAATATTCAAATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR TCA 90 bp | TATTTGAATATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTCAGGGGAGCAGCCCGTaGCGTCAGCGCGTTCCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: YLNICDHICIQTGTGFVSQGSSP*RQRVPE Trigger: TTCTGGAACGCGCTGACGTCACGGGCTGCTCCCCTG...ACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAATATTCAAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200284.5 |
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| CDS-3UTR GCA 90 bp | TATTTGAATATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTGCGCATCTTTCACCCTaGGAAGCCTCAGGGCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: YLNICDHICIQTGTGFVSAHLSP*EASGRP Trigger: TGGCCGCCCTGAGGCTTCGCAGGGTGAAAGATGCGC...ACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAATATTCAAATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR GCA 90 bp | CATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGGCGCATCTTTCACCCTaGGAAGCCTCAGGGCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: HLHTDRHRICEFELFKDRAHLSP*EASGRP Trigger: TGGCCGCCCTGAGGCTTCGCAGGGTGAAAGATGCGC...CCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR GCA 90 bp | TTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGGCGCATCTTTCACCCTaGGAAGCCTCAGGGCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: LHTDRHRICEFELFKDRKAHLSP*EASGRP Trigger: TGGCCGCCCTGAGGCTTCGCAGGGTGAAAGATGCGC...CTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | ATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATCGTCACATTCCAAGGTaGGCGGGGCTTCAGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: ICDHICIQTGTGFVSLNYRHIPR*AGLQPG Trigger: GCCTGGCTGAAGCCCCGCCCACCTTGGAATGTGACG...ATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | TTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGCGTCACATTCCAAGGTaGGCGGGGCTTCAGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LHTDRHRICEFELFKDRKRHIPR*AGLQPG Trigger: GCCTGGCTGAAGCCCCGCCCACCTTGGAATGTGACG...CTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | CATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGGAAGCTGGGTGGCCTTaGCACGGTGCAGAGGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: HLHTDRHRICEFELFKDREAGWP*HGAEGG Trigger: ACCTCCCTCTGCACCGTGCCAAGGCCACCCAGCTTC...CCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | ATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGTGACGAAGCTGGGTGGCCTTaGCACGGTGCAGAGGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: IQTGTGFVSLNYLKTGSDEAGWP*HGAEGG Trigger: ACCTCCCTCTGCACCGTGCCAAGGCCACCCAGCTTC...GTCACTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | GACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGGAAGCTGGGTGGCCTTaGCACGGTGCAGAGGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: DHICIQTGTGFVSLNYLKEAGWP*HGAEGG Trigger: ACCTCCCTCTGCACCGTGCCAAGGCCACCCAGCTTC...CTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | CATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGACCGTCTCCAGGTCATaGCAGACGACTGTGACATCA | + |
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Preference number: 4 (lower is better) Translates to: HLHTDRHRICEFELFKDRTVSRS*QTTVTS Trigger: TGATGTCACAGTCGTCTGCCATGACCTGGAGACGGT...CCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | GACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACCGTCTCCAGGTCATaGCAGACGACTGTGACATCA | + |
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Preference number: 4 (lower is better) Translates to: DHICIQTGTGFVSLNYLKTVSRS*QTTVTS Trigger: TGATGTCACAGTCGTCTGCCATGACCTGGAGACGGT...CTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | ATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATCTCTTAGCCTTGGTGTaGATGAGGTCATCTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: ICDHICIQTGTGFVSLNYLLALV*MRSSSS Trigger: GGAGGAAGATGACCTCATCCACACCAAGGCTAAGAG...ATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CCA 90 bp | GACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGCTCTTAGCCTTGGTGTaGATGAGGTCATCTTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: DHICIQTGTGFVSLNYLKLLALV*MRSSSS Trigger: GGAGGAAGATGACCTCATCCACACCAAGGCTAAGAG...CTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS GCA 90 bp | AGCCGCTGGGGTCAGGGACGCAGGGCAGCAGCGCATCTTTCACCCTaGGAAGCCTCAGGGCGGCCAGGAGCAGGGACAGTGTCAGCAGCG | + |
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Preference number: 5 (lower is better) Translates to: SRWGQGRRAAAHLSP*EASGRPGAGTVSAA Trigger: CGCTGCTGACACTGTCCCTGCTCCTGGCCGCCCTGAGGCTTCGCAGGGTGAAAGATGCGCTGCTGCCCTGCGTCCCTGACCCCAGCGGCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS GCA 90 bp | CAGCGCCGGACAGGAAATATCGCGGGCAGGGTTGCAGGGCGCCAGTaGCATAACGGAACTCCAGGCTCAAGTTGGCGCCGTGGTGGTCGG | + |
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Preference number: 5 (lower is better) Translates to: QRRTGNIAGRVAGRQ*HNGTPGSSWRRGGR Trigger: CCGACCACCACGGCGCCAACTTGAGCCTGGAGTTCCGTTATGGCACTGGCGCCCTGCAACCCTGCCCGCGATATTTCCTGTCCGGCGCTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS GCA 90 bp | TCGAGCCCGCCCACTGTCAAGTCACAGCAGGGCCCTGAGGTCGTCTaGCAGGCGTCCTCATCGTCATTGCTCTCCCGGTGCTGCACCTCG | + |
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Preference number: 5 (lower is better) Translates to: SSPPTVKSQQGPEVV*QASSSSLLSRCCTS Trigger: CGAGGTGCAGCACCGGGAGAGCAATGACGATGAGGACGCCTGGCAGACGACCTCAGGGCCCTGCTGTGACTTGACAGTGGGCGGGCTCGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS CCA 90 bp | GCCCAGGTAGGAGTGGGCAGGCCAGGAGACAGTCACGTCCCCGTCTaGTGTCCAGAGCAGCGTCACATTCCAAGGTGGGCGGGGCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: AQVGVGRPGDSHVPV*CPEQRHIPRWAGLQ Trigger: CTGAAGCCCCGCCCACCTTGGAATGTGACGCTGCTCTGGACACCAGACGGGGACGTGACTGTCTCCTGGCCTGCCCACTCCTACCTGGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS CCA 90 bp | CAGAGGGAGGTGCCGTCCTCGGGCTCCACCCTCTTAGCCTTGGTGTaGATGAGGTCATCTTCCTCCTCGGTCCTGGCTGGCGGGGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: QREVPSSGSTLLALV*MRSSSSSVLAGGAV Trigger: CACAGCCCCGCCAGCCAGGACCGAGGAGGAAGATGACCTCATCCACACCAAGGCTAAGAGGGTGGAGCCCGAGGACGGCACCTCCCTCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS CCA 90 bp | CTTAGCCTTGGTGTGGATGAGGTCATCTTCCTCCTCGGTCCTGGCTaGCGGGGCTGTGGCCTGGGCGTCCGCAATCCAGGCCTGGAAGTT | + |
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Preference number: 5 (lower is better) Translates to: LSLGVDEVIFLLGPG*RGCGLGVRNPGLEV Trigger: AACTTCCAGGCCTGGATTGCGGACGCCCAGGCCACAGCCCCGCCAGCCAGGACCGAGGAGGAAGATGACCTCATCCACACCAAGGCTAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CAA 90 bp | AATATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATCGCCTCCCGGCCCCCTaGGCTCGAAGCTGGGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: NICDHICIQTGTGFVSLNRLPAP*ARSWVA Trigger: GGCCACCCAGCTTCGAGCCAAGGGGGCCGGGAGGCG...ATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAATATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CAA 90 bp | TTTGCATTTTATTTGAATATTTGTGACCACATTTGCATACAGACAGGCACAGGACGCCTCCCGGCCCCCTaGGCTCGAAGCTGGGTGGCC | + |
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Preference number: 5 (lower is better) Translates to: FAFYLNICDHICIQTGTGRLPAP*ARSWVA Trigger: GGCCACCCAGCTTCGAGCCAAGGGGGCCGGGAGGCG...TCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAATATTCAAATAAAATGCAAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CAA 90 bp | CATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGCGAAGCTGGGTGGCCTaGGCACGGTGCAGAGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: HLHTDRHRICEFELFKDRRSWVA*ARCRGR Trigger: CCTCCCTCTGCACCGTGCCAAGGCCACCCAGCTTCG...CCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CAA 90 bp | AATATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATCGAAGCTGGGTGGCCTaGGCACGGTGCAGAGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: NICDHICIQTGTGFVSLNRSWVA*ARCRGR Trigger: CCTCCCTCTGCACCGTGCCAAGGCCACCCAGCTTCG...ATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAATATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CAA 90 bp | ATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATCGAAGCTGGGTGGCCTaGGCACGGTGCAGAGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: ICDHICIQTGTGFVSLNYRSWVA*ARCRGR Trigger: CCTCCCTCTGCACCGTGCCAAGGCCACCCAGCTTCG...ATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS-3UTR CAA 90 bp | AATATTTGTGACCACATTTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATATATCGCGGGCAGGGTaGCAGGGCGCCAGTGCCATA | + |
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Preference number: 5 (lower is better) Translates to: NICDHICIQTGTGFVSLNISRAG*QGASAI Trigger: TATGGCACTGGCGCCCTGCAACCCTGCCCGCGATAT...ATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAAATGTGGTCACAAATATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS-3UTR CAA 90 bp | TTGCATACAGACAGGCACAGGATTTGTGAGTTTGAATTATTTAAAGACAGGAAGATATCGCGGGCAGGGTaGCAGGGCGCCAGTGCCATA | + |
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Preference number: 5 (lower is better) Translates to: LHTDRHRICEFELFKDRKISRAG*QGASAI Trigger: TATGGCACTGGCGCCCTGCAACCCTGCCCGCGATAT...CTTCCTGTCTTTAAATAATTCAAACTCACAAATCCTGTGCCTGTCTGTATGCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS CCA 72 bp | GGCCCCGCCTCCCGGCCCCCTTGGCTCGAAGCTGGGTaGCCTTGGCACGGTGCAGAGGGAGGTGCCGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: GPASRPPWLEAG*PWHGAEGGAVL Trigger: GAGGACGGCACCTCCCTCTGCACCGTGCCAAGGCCACCCAGCTTCGAGCCAAGGGGGCCGGGAGGCGGGGCC 75% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS CAA 72 bp | CGCCTCCCGGCCCCCTTGGCTCGAAGCTGGGTGGCCTaGGCACGGTGCAGAGGGAGGTGCCGTCCTCGGGCT | + |
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Preference number: 6 (lower is better) Translates to: RLPAPLARSWVA*ARCRGRCRPRA Trigger: AGCCCGAGGACGGCACCTCCCTCTGCACCGTGCCAAGGCCACCCAGCTTCGAGCCAAGGGGGCCGGGAGGCG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS CCA 72 bp | GGTCATCTTCCTCCTCGGTCCTGGCTGGCGGGGCTGTaGCCTGGGCGTCCGCAATCCAGGCCTGGAAGTTCC | + |
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Preference number: 6 (lower is better) Translates to: GHLPPRSWLAGL*PGRPQSRPGSS Trigger: GGAACTTCCAGGCCTGGATTGCGGACGCCCAGGCCACAGCCCCGCCAGCCAGGACCGAGGAGGAAGATGACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS CCA 72 bp | CCCGAGCCCCACGTGACCTCCACCGTCTCCAGGTCATaGCAGACGACTGTGACATCACCTGCGGGGGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: PEPHVTSTVSRS*QTTVTSPAGAG Trigger: CCCTGCCCCCGCAGGTGATGTCACAGTCGTCTGCCATGACCTGGAGACGGTGGAGGTCACGTGGGGCTCGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000200284.5 |
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| CDS CCA 72 bp | CCCGAGCCCCACGTGACCTCCACCGTCTCCAGGTCATaGCAGACGACTGTGACATCACCCCGTGACGTCACC | + |
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Preference number: 6 (lower is better) Translates to: PEPHVTSTVSRS*QTTVTSPRDVT Trigger: GGTGACGTCACGGGGTGATGTCACAGTCGTCTGCCATGACCTGGAGACGGTGGAGGTCACGTGGGGCTCGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044579.12 |
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| CDS CCA 72 bp | GGAGTGGGCAGGCCAGGAGACAGTCACGTCCCCGTCTaGTGTCCAGAGCAGCGTCACATTCCAAGGTGGGCG | + |
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Preference number: 6 (lower is better) Translates to: GVGRPGDSHVPV*CPEQRHIPRWA Trigger: CGCCCACCTTGGAATGTGACGCTGCTCTGGACACCAGACGGGGACGTGACTGTCTCCTGGCCTGCCCACTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS TCA 72 bp | GTCGAGCCCGCCCACTGTCAAGTCACAGCAGGGCCCTaGGGTCGTCTGCCAGGCGTCCTCATCGTCATTGCT | + |
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Preference number: 6 (lower is better) Translates to: VEPAHCQVTAGP*GRLPGVLIVIA Trigger: AGCAATGACGATGAGGACGCCTGGCAGACGACCTCAGGGCCCTGCTGTGACTTGACAGTGGGCGGGCTCGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS GCA 72 bp | CCCACTGTCAAGTCACAGCAGGGCCCTGAGGTCGTCTaGCAGGCGTCCTCATCGTCATTGCTCTCCCGGTGC | + |
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Preference number: 6 (lower is better) Translates to: PTVKSQQGPEVV*QASSSSLLSRC Trigger: GCACCGGGAGAGCAATGACGATGAGGACGCCTGGCAGACGACCTCAGGGCCCTGCTGTGACTTGACAGTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000044579.12 ENSMUST00000198960.2 ENSMUST00000200284.5 |
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| CDS CAA 72 bp | GACACCAGCGCCGGACAGGAAATATCGCGGGCAGGGTaGCAGGGCGCCAGTGCCATAACGGAACTCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: DTSAGQEISRAG*QGASAITELQA Trigger: AGCCTGGAGTTCCGTTATGGCACTGGCGCCCTGCAACCCTGCCCGCGATATTTCCTGTCCGGCGCTGGTGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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| CDS GCA 72 bp | ACAGGAAATATCGCGGGCAGGGTTGCAGGGCGCCAGTaGCATAACGGAACTCCAGGCTCAAGTTGGCGCCGT | + |
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Preference number: 6 (lower is better) Translates to: TGNIAGRVAGRQ*HNGTPGSSWRR Trigger: ACGGCGCCAACTTGAGCCTGGAGTTCCGTTATGGCACTGGCGCCCTGCAACCCTGCCCGCGATATTTCCTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044579.12 ENSMUST00000200284.5 |
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