RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CRISPLD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031825

Ensembl transcript IDs: ENSMUST00000034282.16, ENSMUST00000108972.4, ENSMUST00000132583.8

Found 277 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCACCAAAGAAAACATGGCAAGGAGTGTCTCAGTGAGCAGCTCCTaGGAGGAGGTGAGCCACCAGATGGGGACCGCCACCTGGCCAGCC +
Preference number: 1 (lower is better)
Translates to: TTKENMARSVSVSSS*EEVSHQMGTATWPA
Trigger: GGCTGGCCAGGTGGCGGTCCCCATCTGGTGGCTCACCTCCTCTCAGGAGCTGCTCACTGAGACACTCCTTGCCATGTTTTCTTTGGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR GCA 90 bp TCTAGAAACCCAGAAGGGGTATGGTTTTCCTTACCACGTCAGCCTTaGCCTGCTGGCTTGGTGAAGGGTCCTACGGCAGCACTCCTTGTA +
Preference number: 1 (lower is better)
Translates to: SRNPEGVWFSLPRQP*PAGLVKGPTAALLV
Trigger: TACAAGGAGTGCTGCCGTAGGACCCTTCACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACCCCTTCTGGGTTTCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR GCA 90 bp ACTATTGATGAAGGTGATCGATCGAGGCTGCTAGGCCAGGCTCTGTaGCTGATGGAAGGGCAGCCAGGGAACTCAGAGAACCTCAGTACA +
Preference number: 1 (lower is better)
Translates to: TIDEGDRSRLLGQAL*LMEGQPGNSENLST
Trigger: TGTACTGAGGTTCTCTGAGTTCCCTGGCTGCCCTTCCATCAGGCACAGAGCCTGGCCTAGCAGCCTCGATCGATCACCTTCATCAATAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR CCA 90 bp GTCCCCTTCCACAGACTGCGCAGATGTCTGCTCCAACATCTGGAGTaGAAGAGTTTATGCCCTCAAAGACACCACACCCACACCCATGAG +
Preference number: 1 (lower is better)
Translates to: VPFHRLRRCLLQHLE*KSLCPQRHHTHTHE
Trigger: CTCATGGGTGTGGGTGTGGTGTCTTTGAGGGCATAAACTCTTCCACTCCAGATGTTGGAGCAGACATCTGCGCAGTCTGTGGAAGGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR TCA 90 bp ATGTGTGTGGTGCCTGTGGAGACCAGAGATCTCTTGAACGGCCTGTaGATAGTGAGAACTGAGCGCAGGTCCTCCGGTAGAGCAACAAGA +
Preference number: 1 (lower is better)
Translates to: MCVVPVETRDLLNGL*IVRTERRSSGRATR
Trigger: TCTTGTTGCTCTACCGGAGGACCTGCGCTCAGTTCTCACTATTCACAGGCCGTTCAAGAGATCTCTGGTCTCCACAGGCACCACACACAT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR TCA 90 bp CCTTATAGCTGTCGACTCTTGTCACCCAGACAAGAGCCCCATTCATaGCATATCTCAAACCTGTATCCTCAGGGTTCGAAAGCCTTCCCC +
Preference number: 1 (lower is better)
Translates to: PYSCRLLSPRQEPHS*HISNLYPQGSKAFP
Trigger: GGGGAAGGCTTTCGAACCCTGAGGATACAGGTTTGAGATATGTCATGAATGGGGCTCTTGTCTGGGTGACAAGAGTCGACAGCTATAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR TCA 90 bp TTTAAGGAAGAGCTGATGGATGGACACACAGGGTCAGAAGGGCTCTaGTGTAAGGTCTTGTCATTTGTGGTTTTGTTTCCTCCAGTTTCA +
Preference number: 1 (lower is better)
Translates to: FKEELMDGHTGSEGL*CKVLSFVVLFPPVS
Trigger: TGAAACTGGAGGAAACAAAACCACAAATGACAAGACCTTACATCAGAGCCCTTCTGACCCTGTGTGTCCATCCATCAGCTCTTCCTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGGGCCCCTCTTTCTGGTaGCTGGTGTGTCATGGGTGG +
Preference number: 2 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLGPSFW*LVCHGW
Trigger: CCACCCATGACACACCAGCCACCAGAAAGAGGGGCC...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp CCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCCATCTGTGCCCAGGACGTTCAATaGCACCAAAAGGAAGATTCC +
Preference number: 2 (lower is better)
Translates to: PPGQSPGLARGFSLQPICAQDVQ*HQKEDS
Trigger: GGAATCTTCCTTTTGGTGTCATTGAACGTCCTGGGC...ACAGATGGGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp ACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCAGCCCAGGACGTTCAATaGCACCAAAAGGAAGATTCC +
Preference number: 2 (lower is better)
Translates to: TATWPAWALVVQPRDSTAAQDVQ*HQKEDS
Trigger: GGAATCTTCCTTTTGGTGTCATTGAACGTCCTGGGC...TGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp CTGTATCCTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCGCTCCTGAGAGGAGGTaGGCCACCAGATGGGGACCG +
Preference number: 2 (lower is better)
Translates to: LYPQGSKAFPLHHQRKHGAPERR*ATRWGP
Trigger: CGGTCCCCATCTGGTGGCTCACCTCCTCTCAGGAGC...GCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAGGATACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp CACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGATGCTGGCAGGCACTaGGGGGTTCTTCCTGTGTGT +
Preference number: 2 (lower is better)
Translates to: HRQSAPCSGLGWDSTFSRDAGRH*GVLPVC
Trigger: ACACACAGGAAGAACCCCTCAGTGCCTGCCAGCATC...TCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGCCTCACCAAAGGCCATaGAGGCCCAGGACGTTCAAT +
Preference number: 2 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLPHQRP*RPRTFN
Trigger: ATTGAACGTCCTGGGCCTCCATGGCCTTTGGTGAGG...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp CCCAGAAGGGGTATGGTTTTCCTTACCACGTCAGCCTTGCCCTGCTGGCTTGGTCCACACCCACACCCATaGGGCAGAAACAGCCTAGTG +
Preference number: 2 (lower is better)
Translates to: PRRGMVFLTTSALPCWLGPHPHP*GRNSLV
Trigger: CACTAGGCTGTTTCTGCCTCATGGGTGTGGGTGTGG...ACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACCCCTTCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp CTTGCAAAGCCAAACCCCAGAGGAGGACACCTAGATCTGCTGAGGGTGGGGCAGCCTCACCAAAGGCCATaGAGGCCCAGGACGTTCAAT +
Preference number: 2 (lower is better)
Translates to: LAKPNPRGGHLDLLRVGQPHQRP*RPRTFN
Trigger: ATTGAACGTCCTGGGCCTCCATGGCCTTTGGTGAGG...CTGCCCCACCCTCAGCAGATCTAGGTGTCCTCCTCTGGGGTTTGGCTTTGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp ATGGTAGGGAAGGCTCCTGATGTATTGGTCCTCCATGAGACCAAAGGTCATGTGGCTCCTGAGAGGAGGTaGGCCACCAGATGGGGACCG +
Preference number: 2 (lower is better)
Translates to: MVGKAPDVLVLHETKGHVAPERR*ATRWGP
Trigger: CGGTCCCCATCTGGTGGCTCACCTCCTCTCAGGAGC...CACATGACCTTTGGTCTCATGGAGGACCAATACATCAGGAGCCTTCCCTACCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CAA 90 bp GGGTCCTACGGCAGCACTCCTTGTATCGGGAAGTTTCCCAGATGTTaGGTAGCAACCAGAGGTCCCCTTCCACAGACTGCGCAGATGTCT +
Preference number: 2 (lower is better)
Translates to: GSYGSTPCIGKFPRC*VATRGPLPQTAQMS
Trigger: AGACATCTGCGCAGTCTGTGGAAGGGGACCTCTGGTTGCTACCAAACATCTGGGAAACTTCCCGATACAAGGAGTGCTGCCGTAGGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR CAA 90 bp GAAGGGGTATGGTTTTCCTTACCACGTCAGCCTTGCCCTGCTGGCTaGGTGAAGGGTCCTACGGCAGCACTCCTTGTATCGGGAAGTTTC +
Preference number: 2 (lower is better)
Translates to: EGVWFSLPRQPCPAG*VKGPTAALLVSGSF
Trigger: GAAACTTCCCGATACAAGGAGTGCTGCCGTAGGACCCTTCACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp ATAGACACCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCCAAGAGCCCCATTCATaGCATATCTCAAACCTGTAT +
Preference number: 2 (lower is better)
Translates to: IDTTRAEPRSCSGLLPAAQEPHS*HISNLY
Trigger: ATACAGGTTTGAGATATGTCATGAATGGGGCTCTTG...GGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGGTGTCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp CACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGGACTTATAAGCACGTaGCTGCCAAAAAGGTTGGGG +
Preference number: 2 (lower is better)
Translates to: HRQSAPCSGLGWDSTFSRGLIST*LPKRLG
Trigger: CCCCAACCTTTTTGGCAGTCACGTGCTTATAAGTCC...TCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp CACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGTGGCTGGTGTGTCATaGGTGGTTTTACAACCACAG +
Preference number: 2 (lower is better)
Translates to: HRQSAPCSGLGWDSTFSRVAGVS*VVLQPQ
Trigger: CTGTGGTTGTAAAACCACCCATGACACACCAGCCAC...TCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp ATGGTAGGGAAGGCTCCTGATGTATTGGTCCTCCATGAGACCAAAGGTCATGTGTCAGTGAGCAGCTCCTaGGAGGAGGTGAGCCACCAG +
Preference number: 2 (lower is better)
Translates to: MVGKAPDVLVLHETKGHVSVSSS*EEVSHQ
Trigger: CTGGTGGCTCACCTCCTCTCAGGAGCTGCTCACTGA...CACATGACCTTTGGTCTCATGGAGGACCAATACATCAGGAGCCTTCCCTACCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp CTTGCAAAGCCAAACCCCAGAGGAGGACACCTAGATCTGCTGAGGGTGGGGCAGAGACCAAAGGTCATGTaGGAAAAGGCCACACAGACA +
Preference number: 2 (lower is better)
Translates to: LAKPNPRGGHLDLLRVGQRPKVM*EKATQT
Trigger: TGTCTGTGTGGCCTTTTCTCACATGACCTTTGGTCT...CTGCCCCACCCTCAGCAGATCTAGGTGTCCTCCTCTGGGGTTTGGCTTTGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR GCA 90 bp ACAGAAGCATGCTTCATTTTACAGTGGGTTTGGACCAGGCTCCTAAGTGATGGGCTTGGAGCCTGGGGATaGTGGCAGGCACTGAGGGGT +
Preference number: 2 (lower is better)
Translates to: TEACFILQWVWTRLLSDGLGAWG*WQALRG
Trigger: ACCCCTCAGTGCCTGCCAGCATCCCCAGGCTCCAAG...CCCATCACTTAGGAGCCTGGTCCAAACCCACTGTAAAATGAAGCATGCTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR GCA 90 bp CCCAGAAGGGGTATGGTTTTCCTTACCACGTCAGCCTTGCCCTGCTGGCTTGGTGAACCATTTGTACTTTaGTCCTGTGAATGTGTGTGG +
Preference number: 2 (lower is better)
Translates to: PRRGMVFLTTSALPCWLGEPFVL*SCECVW
Trigger: CCACACACATTCACAGGAGCAAAGTACAAATGGTTC...ACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACCCCTTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp CCAGACAAGAGCCCCATTCATGACATATCTCAAACCTGTATCCTCAGGGTTCGACCTCACCAAAGGCCATaGAGGCCCAGGACGTTCAAT +
Preference number: 2 (lower is better)
Translates to: PDKSPIHDISQTCILRVRPHQRP*RPRTFN
Trigger: ATTGAACGTCCTGGGCCTCCATGGCCTTTGGTGAGG...TCGAACCCTGAGGATACAGGTTTGAGATATGTCATGAATGGGGCTCTTGTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp TCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAACATTTAATGGGGACCGCCACCTaGCCAGCCTGGGCACTGGTT +
Preference number: 2 (lower is better)
Translates to: SRPAWTTIVKLSQTNKHLMGTAT*PAWALV
Trigger: AACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCAT...TAAATGTTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCAAAAGGTTGGGGAATGTaGGCACGGATAGACACCACC +
Preference number: 2 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSKGWGM*ARIDTT
Trigger: GGTGGTGTCTATCCGTGCTCACATTCCCCAACCTTT...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp ACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGGACAAGATAAATCTCTaGAGTGCTACCAACTTTAAA +
Preference number: 2 (lower is better)
Translates to: TGNLPHAQDWGGIPPSLEDKINL*SATNFK
Trigger: TTTAAAGTTGGTAGCACTCCAGAGATTTATCTTGTC...CTCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CAA 90 bp AGAACCTCAGTACAGACTCACACAGCAAGTTCCCTGAAGATGGGATaGGCTGCTCATTCTAGAAACCCAGAAGGGGTATGGTTTTCCTTA +
Preference number: 2 (lower is better)
Translates to: RTSVQTHTASSLKMG*AAHSRNPEGVWFSL
Trigger: TAAGGAAAACCATACCCCTTCTGGGTTTCTAGAATGAGCAGCCAATCCCATCTTCAGGGAACTTGCTGTGTGAGTCTGTACTGAGGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp CAGAAGGGCTCTGATGTAAGGTCTTGTCATTTGTGGTTTTGTTTCCTCCAGTTTGGACTTATAAGCACGTaGCTGCCAAAAAGGTTGGGG +
Preference number: 2 (lower is better)
Translates to: QKGSDVRSCHLWFCFLQFGLIST*LPKRLG
Trigger: CCCCAACCTTTTTGGCAGTCACGTGCTTATAAGTCC...AAACTGGAGGAAACAAAACCACAAATGACAAGACCTTACATCAGAGCCCTTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp ATGAGGTCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAATGTACTTTGCTCCTGTaGATGTGTGTGGTGCCTGTG +
Preference number: 2 (lower is better)
Translates to: MRSRPAWTTIVKLSQTNKCTLLL*MCVVPV
Trigger: CACAGGCACCACACACATTCACAGGAGCAAAGTACA...TTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGACCTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR TCA 90 bp ACAACCAGTGTGGCCCTGTTCATGCGAAGCACAAAAACTTACAATAAACTTTTGACACAGCAAGTTCCCTaGAGATGGGATTGGCTGCTC +
Preference number: 2 (lower is better)
Translates to: TTSVALFMRSTKTYNKLLTQQVP*RWDWLL
Trigger: GAGCAGCCAATCCCATCTTCAGGGAACTTGCTGTGT...CAAAAGTTTATTGTAAGTTTTTGTGCTTCGCATGAACAGGGCCACACTGGTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp GGTTTTGTTTCCTCCAGTTTCAAACTATTGATGAAGGTGATCGATCGAGGCTGCCCAGAAGGGGTGGATTaGGGAAAAGCTATCTTAGCA +
Preference number: 2 (lower is better)
Translates to: GFVSSSFKLLMKVIDRGCPEGVD*GKAILA
Trigger: TGCTAAGATAGCTTTTCCCCAATCCACCCCTTCTGG...GCAGCCTCGATCGATCACCTTCATCAATAGTTTGAAACTGGAGGAAACAAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp TCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAACATTTACTGGTGTGTCATGGGTaGTTTTACAACCACAGGCCA +
Preference number: 2 (lower is better)
Translates to: SRPAWTTIVKLSQTNKHLLVCHG*FYNHRP
Trigger: TGGCCTGTGGTTGTAAAACCACCCATGACACACCAG...TAAATGTTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp ACAACCAGTGTGGCCCTGTTCATGCGAAGCACAAAAACTTACAATAAACTTTTGAACCCAGAAGGGGTATaGTTTTCCTTACCACGTCAG +
Preference number: 2 (lower is better)
Translates to: TTSVALFMRSTKTYNKLLNPEGV*FSLPRQ
Trigger: CTGACGTGGTAAGGAAAACCATACCCCTTCTGGGTT...CAAAAGTTTATTGTAAGTTTTTGTGCTTCGCATGAACAGGGCCACACTGGTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR GCA 90 bp GGTTTTGTTTCCTCCAGTTTCAAACTATTGATGAAGGTGATCGATCGAGGCTGCCTGTTTACAGAAGCATaGTTCATTTTACAGTGGGTT +
Preference number: 2 (lower is better)
Translates to: GFVSSSFKLLMKVIDRGCLFTEA*FILQWV
Trigger: AACCCACTGTAAAATGAAGCATGCTTCTGTAAACAG...GCAGCCTCGATCGATCACCTTCATCAATAGTTTGAAACTGGAGGAAACAAAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CCA 90 bp TCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAACATTTAATTTTACAGTGGGTTTaGACCAGGCTCCTAAGTGAT +
Preference number: 2 (lower is better)
Translates to: SRPAWTTIVKLSQTNKHLILQWV*TRLLSD
Trigger: ATCACTTAGGAGCCTGGTCCAAACCCACTGTAAAAT...TAAATGTTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CAA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGGGCAGAGCCCAGGTCTaGCTCGGGGCTTCTCCCTGC +
Preference number: 3 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLGRAQV*LGASPC
Trigger: GCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCC...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR GCA 72 bp GCACGGATAGACACCACCAGGGCAGAGCCCAGGTCTTaGTCGGGGCTTCTCCCTGCAGCCCATCTGTCTGAC +
Preference number: 3 (lower is better)
Translates to: ARIDTTRAEPRS*SGLLPAAHLSD
Trigger: GTCAGACAGATGGGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGGTGTCTATCCGTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR TCA 72 bp GAAAACATGGCAAGGAGTGTCTCAGTGAGCAGCTCCTaGGAGGAGGTGAGCCACCAGATGGGGACCGCCACC +
Preference number: 3 (lower is better)
Translates to: ENMARSVSVSSS*EEVSHQMGTAT
Trigger: GGTGGCGGTCCCCATCTGGTGGCTCACCTCCTCTCAGGAGCTGCTCACTGAGACACTCCTTGCCATGTTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR GCA 72 bp AGGGGTATGGTTTTCCTTACCACGTCAGCCTTGCCCTaGTGGCTTGGTGAAGGGTCCTACGGCAGCACTCCT +
Preference number: 3 (lower is better)
Translates to: RGMVFLTTSALP*WLGEGSYGSTP
Trigger: AGGAGTGCTGCCGTAGGACCCTTCACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR GCA 72 bp CCAGAAGGGGTATGGTTTTCCTTACCACGTCAGCCTTaGCCTGCTGGCTTGGTGAAGGGTCCTACGGCAGCA +
Preference number: 3 (lower is better)
Translates to: PEGVWFSLPRQP*PAGLVKGPTAA
Trigger: TGCTGCCGTAGGACCCTTCACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACCCCTTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR CCA 72 bp AGGGGGAAGGTGCTCGGTCACCCTCACCAAAGGCCATaGAGGCCCAGGACGTTCAATGACACCAAAAGGAAG +
Preference number: 3 (lower is better)
Translates to: RGKVLGHPHQRP*RPRTFNDTKRK
Trigger: CTTCCTTTTGGTGTCATTGAACGTCCTGGGCCTCCATGGCCTTTGGTGAGGGTGACCGAGCACCTTCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR TCA 72 bp TTTCCTTACCACGTCAGCCTTGCCCTGCTGGCTTGGTaGAGGGTCCTACGGCAGCACTCCTTGTATCGGGAA +
Preference number: 3 (lower is better)
Translates to: FPYHVSLALLAW*RVLRQHSLYRE
Trigger: TTCCCGATACAAGGAGTGCTGCCGTAGGACCCTTCACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR CCA 72 bp TGTCCCGGGCCCCTCTTTCTGGTGGCTGGTGTGTCATaGGTGGTTTTACAACCACAGGCCACTCCATTAACC +
Preference number: 3 (lower is better)
Translates to: CPGPLFLVAGVS*VVLQPQATPLT
Trigger: GGTTAATGGAGTGGCCTGTGGTTGTAAAACCACCCATGACACACCAGCCACCAGAAAGAGGGGCCCGGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CCA 72 bp GGTATGGTTTTCCTTACCACGTCAGCCTTGCCCTGCTaGCTTGGTGAAGGGTCCTACGGCAGCACTCCTTGT +
Preference number: 3 (lower is better)
Translates to: GMVFLTTSALPC*LGEGSYGSTPC
Trigger: ACAAGGAGTGCTGCCGTAGGACCCTTCACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR TCA 72 bp GTGCCTGTGGAGACCAGAGATCTCTTGAACGGCCTGTaGATAGTGAGAACTGAGCGCAGGTCCTCCGGTAGA +
Preference number: 3 (lower is better)
Translates to: VPVETRDLLNGL*IVRTERRSSGR
Trigger: TCTACCGGAGGACCTGCGCTCAGTTCTCACTATTCACAGGCCGTTCAAGAGATCTCTGGTCTCCACAGGCAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR TCA 72 bp GCAGCTGGTGTGGGCGTGGTCACTTTAAGGAAGAGCTaGTGGATGGACACACAGGGTCAGAAGGGCTCTGAT +
Preference number: 3 (lower is better)
Translates to: AAGVGVVTLRKS*WMDTQGQKGSD
Trigger: ATCAGAGCCCTTCTGACCCTGTGTGTCCATCCATCAGCTCTTCCTTAAAGTGACCACGCCCACACCAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR TCA 72 bp CTTCATTTTACAGTGGGTTTGGACCAGGCTCCTAAGTaGTGGGAGCCAGGGCTCACCACACTCTTGGAGCCT +
Preference number: 3 (lower is better)
Translates to: LHFTVGLDQAPK*WEPGLTTLLEP
Trigger: AGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAGCCTGGTCCAAACCCACTGTAAAATGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CCA 72 bp GGATTGGCTGCTCATTCTAGAAACCCAGAAGGGGTATaGTTTTCCTTACCACGTCAGCCTTGCCCTGCTGGC +
Preference number: 3 (lower is better)
Translates to: GLAAHSRNPEGV*FSLPRQPCPAG
Trigger: GCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACCCCTTCTGGGTTTCTAGAATGAGCAGCCAATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR GCA 72 bp ATGTTTGGTAGCAACCAGAGGTCCCCTTCCACAGACTaGGCAGATGTCTGCTCCAACATCTGGAGTGGAAGA +
Preference number: 3 (lower is better)
Translates to: MFGSNQRSPSTD*ADVCSNIWSGR
Trigger: TCTTCCACTCCAGATGTTGGAGCAGACATCTGCGCAGTCTGTGGAAGGGGACCTCTGGTTGCTACCAAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR CCA 72 bp ACTCACCGGCAATCTGCCCCATGCTCAGGACTGGGGTaGGATTCCACCTTCTCTAGAGTAAAGCTGTTTACA +
Preference number: 3 (lower is better)
Translates to: THRQSAPCSGLG*DSTFSRVKLFT
Trigger: TGTAAACAGCTTTACTCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CCA 72 bp CACAGACTGCGCAGATGTCTGCTCCAACATCTGGAGTaGAAGAGTTTATGCCCTCAAAGACACCACACCCAC +
Preference number: 3 (lower is better)
Translates to: HRLRRCLLQHLE*KSLCPQRHHTH
Trigger: GTGGGTGTGGTGTCTTTGAGGGCATAAACTCTTCCACTCCAGATGTTGGAGCAGACATCTGCGCAGTCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR TCA 72 bp AAAGCCTACAGATCATGGAGAATCGGCACACCCCTCTaGACAGACCGGGCACAGCTTGGAAGCAAATGGAAA +
Preference number: 3 (lower is better)
Translates to: KAYRSWRIGTPL*TDRAQLGSKWK
Trigger: TTTCCATTTGCTTCCAAGCTGTGCCCGGTCTGTTCAGAGGGGTGTGCCGATTCTCCATGATCTGTAGGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR GCA 72 bp AGATGTCTGCTCCAACATCTGGAGTGGAAGAGTTTATaGCCTCAAAGACACCACACCCACACCCATGAGGCA +
Preference number: 3 (lower is better)
Translates to: RCLLQHLEWKSL*PQRHHTHTHEA
Trigger: TGCCTCATGGGTGTGGGTGTGGTGTCTTTGAGGGCATAAACTCTTCCACTCCAGATGTTGGAGCAGACATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CAA 90 bp TCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAACATTTAGGGCTCACCACACTCTaGGAGCCTGGGGATGCTGGC +
Preference number: 3 (lower is better)
Translates to: SRPAWTTIVKLSQTNKHLGLTTL*EPGDAG
Trigger: GCCAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCC...TAAATGTTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CAA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCAAAGGCTCCTGATGTATaGGTCCTCCATGAGACCAAA +
Preference number: 3 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSKAPDV*VLHETK
Trigger: TTTGGTCTCATGGAGGACCAATACATCAGGAGCCTT...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR TCA 72 bp TGTCGACTCTTGTCACCCAGACAAGAGCCCCATTCATaGCATATCTCAAACCTGTATCCTCAGGGTTCGAAA +
Preference number: 3 (lower is better)
Translates to: CRLLSPRQEPHS*HISNLYPQGSK
Trigger: TTTCGAACCCTGAGGATACAGGTTTGAGATATGTCATGAATGGGGCTCTTGTCTGGGTGACAAGAGTCGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CCA 72 bp GCCAGCCTGGGCTACATAATGAGGTCAAGGCCAGCCTaGACTACCATAGTGAAACTGTCTCAAACAAATAAA +
Preference number: 3 (lower is better)
Translates to: ASLGYIMRSRPA*TTIVKLSQTNK
Trigger: TTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGACCTCATTATGTAGCCCAGGCTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR-3UTR CAA 90 bp ACAACCAGTGTGGCCCTGTTCATGCGAAGCACAAAAACTTACAATAAACTTTTGGTAAGGTCTTGTCATTaGTGGTTTTGTTTCCTCCAG +
Preference number: 3 (lower is better)
Translates to: TTSVALFMRSTKTYNKLLVRSCH*WFCFLQ
Trigger: CTGGAGGAAACAAAACCACAAATGACAAGACCTTAC...CAAAAGTTTATTGTAAGTTTTTGTGCTTCGCATGAACAGGGCCACACTGGTTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp ACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGGGTGCACATGGGGCCTaGGCACCGCTCCCGGCACCG +
Preference number: 4 (lower is better)
Translates to: TRWGPPPGQPGHWLSSQEGAHGA*APLPAP
Trigger: CGGTGCCGGGAGCGGTGCTCAGGCCCCATGTGCACC...CTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCACGCCATCCCATTCCTGGTaGCATCCACCAGGCCACCTC +
Preference number: 4 (lower is better)
Translates to: RHLASLGTGCPAKRLHGTPSHSW*HPPGHL
Trigger: GAGGTGGCCTGGTGGATGTCACCAGGAATGGGATGG...CGTGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ATAGACACCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCAGGCCGGCGGGCCCGTaGTCCCACAGGCATCTATGT +
Preference number: 4 (lower is better)
Translates to: IDTTRAEPRSCSGLLPAARPAGP*SHRHLC
Trigger: ACATAGATGCCTGTGGGAGCACGGGCCCGCCGGCCT...GGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGGTGTCTAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCACAGGAGAGCGGTACCTaGCCCAGTGCACAGCCAGGT +
Preference number: 4 (lower is better)
Translates to: TATWPAWALVVQPRDSTAQESGT*PSAQPG
Trigger: ACCTGGCTGTGCACTGGGGCAGGTACCGCTCTCCTG...TGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CAA 72 bp AGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTaGTCCAGCCAAGAGACTCCACGGCACGCTGCTCAT +
Preference number: 4 (lower is better)
Translates to: RWGPPPGQPGHW*SSQETPRHAAH
Trigger: ATGAGCAGCGTGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGACACCTCGTCGTACCATaGCTGCACATGGAACCCAGG +
Preference number: 4 (lower is better)
Translates to: HQMGTATWPAWALVVQPRHLVVP*LHMEPR
Trigger: CCTGGGTTCCATGTGCAGTCATGGTACGACGAGGTG...TCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp CCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCCATCTGTAGACCTTCGCCTTGTTaGTCAGACAGCCTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: PPGQSPGLARGFSLQPICRPSPC*SDSLLG
Trigger: GCCCAGCAGGCTGTCTGAGCAACAAGGCGAAGGTCT...ACAGATGGGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCCATCTGTTCCTCCGTAGCTGGATaGACACTCAGAGCAGGGACG +
Preference number: 4 (lower is better)
Translates to: PPGQSPGLARGFSLQPICSSVAG*TLRAGT
Trigger: CGTCCCTGCTCTGAGTGTCCATCCAGCTACGGAGGA...ACAGATGGGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp AAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTGTCTCAGTGAGCGGTGCACATGGGGCCTaGGCACCGCTCCCGGCACCG +
Preference number: 4 (lower is better)
Translates to: KPSPSTTKENMARSVSVSGAHGA*APLPAP
Trigger: CGGTGCCGGGAGCGGTGCTCAGGCCCCATGTGCACC...GCTCACTGAGACACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCCATCTGTTTGATCACCCTGGGCTaGACCCAGACATGGGTTTCC +
Preference number: 4 (lower is better)
Translates to: PPGQSPGLARGFSLQPICLITLG*TQTWVS
Trigger: GGAAACCCATGTCTGGGTTCAGCCCAGGGTGATCAA...ACAGATGGGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp ACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCACACAGCCGATCTTGTTaGTGGTGGCCCAGACCATCT +
Preference number: 4 (lower is better)
Translates to: TATWPAWALVVQPRDSTAHSRSC*WWPRPS
Trigger: AGATGGTCTGGGCCACCACCAACAAGATCGGCTGTG...TGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTCATGAGGGGGAAGGTGCTCGGTCACCCTCACCAAAGGCCATGGAGGCCCAGGGACATGGGTTTCCTCTaGAGCAGGGGGCGATTCCAC +
Preference number: 4 (lower is better)
Translates to: LMRGKVLGHPHQRPWRPRDMGFL*SRGRFH
Trigger: GTGGAATCGCCCCCTGCTCCAGAGGAAACCCATGTC...CCTGGGCCTCCATGGCCTTTGGTGAGGGTGACCGAGCACCTTCCCCCTCATGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGACAGCCTGCTGGGCACTaGTACCTGTTACACGTGGAT +
Preference number: 4 (lower is better)
Translates to: HQMGTATWPAWALVVQPRQPAGH*YLLHVD
Trigger: ATCCACGTGTAACAGGTACCAGTGCCCAGCAGGCTG...TCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CTCATGAGGGGGAAGGTGCTCGGTCACCCTCACCAAAGGCCATGGAGGCCCAGGTTGATCACCCTGGGCTaGACCCAGACATGGGTTTCC +
Preference number: 4 (lower is better)
Translates to: LMRGKVLGHPHQRPWRPRLITLG*TQTWVS
Trigger: GGAAACCCATGTCTGGGTTCAGCCCAGGGTGATCAA...CCTGGGCCTCCATGGCCTTTGGTGAGGGTGACCGAGCACCTTCCCCCTCATGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCACTGCATGCTGGTATTTaGTCAGCAGCTTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: TATWPAWALVVQPRDSTALHAGI*SAASPG
Trigger: GCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAG...TGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp CACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGAGTGTGGCTCTGCATaGTGGTATTTGCTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: HQMGTATWPAWALVVQPRECGSA*WYLLSS
Trigger: GCTGCTGAGCAAATACCAGCATGCAGAGCCACACTC...TCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp CCCAGAAGGGGTATGGTTTTCCTTACCACGTCAGCCTTGCCCTGCTGGCTTGGTAGGCCGGCGGGCCCGTaGTCCCACAGGCATCTATGT +
Preference number: 4 (lower is better)
Translates to: PRRGMVFLTTSALPCWLGRPAGP*SHRHLC
Trigger: ACATAGATGCCTGTGGGAGCACGGGCCCGCCGGCCT...ACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACCCCTTCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGCAGGAGAGCGGTACCTaGCCCAGTGCACAGCCAGGT +
Preference number: 4 (lower is better)
Translates to: TGNLPHAQDWGGIPPSLEQESGT*PSAQPG
Trigger: ACCTGGCTGTGCACTGGGGCAGGTACCGCTCTCCTG...CTCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp ACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGTACCATGACTGCACATaGAACCCAGGAGAGCGGTAC +
Preference number: 4 (lower is better)
Translates to: TRWGPPPGQPGHWLSSQEYHDCT*NPGERY
Trigger: GTACCGCTCTCCTGGGTTCCATGTGCAGTCATGGTA...CTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCCATCTGTCGATCTTGTTGGTGGTaGCCCAGACCATCTGTGTGT +
Preference number: 4 (lower is better)
Translates to: PPGQSPGLARGFSLQPICRSCWW*PRPSVC
Trigger: ACACACAGATGGTCTGGGCCACCACCAACAAGATCG...ACAGATGGGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ATAGACACCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCGAGTGTGGCTCTGCATaGTGGTATTTGCTCAGCAGC +
Preference number: 4 (lower is better)
Translates to: IDTTRAEPRSCSGLLPAAECGSA*WYLLSS
Trigger: GCTGCTGAGCAAATACCAGCATGCAGAGCCACACTC...GGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGGTGTCTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTCATGAGGGGGAAGGTGCTCGGTCACCCTCACCAAAGGCCATGGAGGCCCAGGCCAGGCTCGTGGTGTTaGGAAGGAAAAAGGCCTGTA +
Preference number: 4 (lower is better)
Translates to: LMRGKVLGHPHQRPWRPRPGSWC*EGKRPV
Trigger: TACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGG...CCTGGGCCTCCATGGCCTTTGGTGAGGGTGACCGAGCACCTTCCCCCTCATGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp ACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGTGTGGCTCTGCATGCTaGTATTTGCTCAGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: TRWGPPPGQPGHWLSSQECGSAC*YLLSSF
Trigger: GAAGCTGCTGAGCAAATACCAGCATGCAGAGCCACA...CTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGATCATGTGTTCCATGTTaGAGGCAGGGGGATACACCT +
Preference number: 4 (lower is better)
Translates to: HQMGTATWPAWALVVQPRSCVPC*RQGDTP
Trigger: AGGTGTATCCCCCTGCCTCCAACATGGAACACATGA...TCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGTCCTCCGTAGCTGGATaGACACTCAGAGCAGGGACG +
Preference number: 4 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLSSVAG*TLRAGT
Trigger: CGTCCCTGCTCTGAGTGTCCATCCAGCTACGGAGGA...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGACGTCTCTGTCACTTTTaGCACAGTGAAGGAGCTAGA +
Preference number: 4 (lower is better)
Translates to: HQMGTATWPAWALVVQPRRLCHF*HSEGAR
Trigger: TCTAGCTCCTTCACTGTGTCAAAAGTGACAGAGACG...TCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp AAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTGTCTCAGTGAGCAGGCCGGCGGGCCCGTaGTCCCACAGGCATCTATGT +
Preference number: 4 (lower is better)
Translates to: KPSPSTTKENMARSVSVSRPAGP*SHRHLC
Trigger: ACATAGATGCCTGTGGGAGCACGGGCCCGCCGGCCT...GCTCACTGAGACACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp ATAGACACCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCTCATGTGTTCCATGTTaGAGGCAGGGGGATACACCT +
Preference number: 4 (lower is better)
Translates to: IDTTRAEPRSCSGLLPAASCVPC*RQGDTP
Trigger: AGGTGTATCCCCCTGCCTCCAACATGGAACACATGA...GGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGGTGTCTAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGAGCCGATCTTGTTGGTaGTGGCCCAGACCATCTGTG +
Preference number: 4 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLSRSCW*WPRPSV
Trigger: CACAGATGGTCTGGGCCACCACCAACAAGATCGGCT...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp AAGGAGTGTCTCAGTGAGCAGCTCCTGAGAGGAGGTGAGCCACCAGATGGGGACAGCCTCCTCCGTAGCTaGATGGACACTCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: KECLSEQLLRGGEPPDGDSLLRS*MDTQSR
Trigger: CCTGCTCTGAGTGTCCATCCAGCTACGGAGGAGGCT...GTCCCCATCTGGTGGCTCACCTCCTCTCAGGAGCTGCTCACTGAGACACTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCACGTCCATGCCATTTTTCTaGGACTTGACAAAGAAGGGT +
Preference number: 4 (lower is better)
Translates to: RHLASLGTGCPAKRLHGTSMPFF*DLTKKG
Trigger: ACCCTTCTTTGTCAAGTCTCAGAAAAATGGCATGGA...CGTGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp ATAGACACCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCCGTCTCTGTCACTTTTaGCACAGTGAAGGAGCTAGA +
Preference number: 4 (lower is better)
Translates to: IDTTRAEPRSCSGLLPAARLCHF*HSEGAR
Trigger: TCTAGCTCCTTCACTGTGTCAAAAGTGACAGAGACG...GGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGGTGTCTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp GGAGGCCCAGGACGTTCAATGACACCAAAAGGAAGATTCCTGACTCTCTGTCACCGGTACCTGCCCCAGTaGACAGCCAGGTTCTGCCCG +
Preference number: 4 (lower is better)
Translates to: GGPGRSMTPKGRFLTLCHRYLPQ*TARFCP
Trigger: CGGGCAGAACCTGGCTGTGCACTGGGGCAGGTACCG...GTGACAGAGAGTCAGGAATCTTCCTTTTGGTGTCATTGAACGTCCTGGGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCACCTTGGGAGAATAATTaGAGACGAGATACACGGCAT +
Preference number: 4 (lower is better)
Translates to: TATWPAWALVVQPRDSTAPWENN*RRDTRH
Trigger: ATGCCGTGTATCTCGTCTGCAATTATTCTCCCAAGG...TGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGCCTTGGGAGAATAATTaGAGACGAGATACACGGCAT +
Preference number: 4 (lower is better)
Translates to: TRWGPPPGQPGHWLSSQEPWENN*RRDTRH
Trigger: ATGCCGTGTATCTCGTCTGCAATTATTCTCCCAAGG...CTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCATACACGTGGATCCTTTaGATGAGTCCTTCATCTTGG +
Preference number: 4 (lower is better)
Translates to: TATWPAWALVVQPRDSTAYTWIL*MSPSSW
Trigger: CCAAGATGAAGGACTCATGCAAAGGATCCACGTGTA...TGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGTACCATGACTGCACATaGAACCCAGGAGAGCGGTAC +
Preference number: 4 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLYHDCT*NPGERY
Trigger: GTACCGCTCTCCTGGGTTCCATGTGCAGTCATGGTA...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCACGCAATCCAGTTTCCCTTaGGAGAATAATTGCAGACGA +
Preference number: 4 (lower is better)
Translates to: RHLASLGTGCPAKRLHGTQSSFP*ENNCRR
Trigger: TCGTCTGCAATTATTCTCCCAAGGGAAACTGGATTG...CGTGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTTGCAAAGCCAAACCCCAGAGGAGGACACCTAGATCTGCTGAGGGTGGGGCAGCAGCCTGCTGGGCACTaGTACCTGTTACACGTGGAT +
Preference number: 4 (lower is better)
Translates to: LAKPNPRGGHLDLLRVGQQPAGH*YLLHVD
Trigger: ATCCACGTGTAACAGGTACCAGTGCCCAGCAGGCTG...CTGCCCCACCCTCAGCAGATCTAGGTGTCCTCCTCTGGGGTTTGGCTTTGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp ACCAGATGGGGACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGTATCAGCATAGATGTTaGTTCCATACACAGGAGCCC +
Preference number: 4 (lower is better)
Translates to: TRWGPPPGQPGHWLSSQEYQHRC*FHTQEP
Trigger: GGGCTCCTGTGTATGGAACCAACATCTATGCTGATA...CTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGTCCCCATCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CACACCCCTCTGAACAGACCGGGCACAGCTTGGAAGCAAATGGAAACTCTCACCCACCTCGTCGTACCATaGCTGCACATGGAACCCAGG +
Preference number: 4 (lower is better)
Translates to: HTPLNRPGTAWKQMETLTHLVVP*LHMEPR
Trigger: CCTGGGTTCCATGTGCAGTCATGGTACGACGAGGTG...GGTGAGAGTTTCCATTTGCTTCCAAGCTGTGCCCGGTCTGTTCAGAGGGGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CTGTATCCTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCCCATCCCATTCCTGGTaGCATCCACCAGGCCACCTC +
Preference number: 4 (lower is better)
Translates to: LYPQGSKAFPLHHQRKHGPSHSW*HPPGHL
Trigger: GAGGTGGCCTGGTGGATGTCACCAGGAATGGGATGG...GCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAGGATACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp ACCGCCACCTGGCCAGCCTGGGCACTGGTTGTCCAGCCAAGAGACTCCACGGCATCCATGCCATTTTTCTaGGACTTGACAAAGAAGGGT +
Preference number: 4 (lower is better)
Translates to: TATWPAWALVVQPRDSTASMPFF*DLTKKG
Trigger: ACCCTTCTTTGTCAAGTCTCAGAAAAATGGCATGGA...TGCCGTGGAGTCTCTTGGCTGGACAACCAGTGCCCAGGCTGGCCAGGTGGCGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp GAGGCAGCCCTTATTCTAAGAAGTGAGAAGACATCTGAGACCTGGAGCCTCTTGCGGTACCTGCCCCAGTaGACAGCCAGGTTCTGCCCG +
Preference number: 4 (lower is better)
Translates to: EAALILRSEKTSETWSLLRYLPQ*TARFCP
Trigger: CGGGCAGAACCTGGCTGTGCACTGGGGCAGGTACCG...CAAGAGGCTCCAGGTCTCAGATGTCTTCTCACTTCTTAGAATAAGGGCTGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGTCGTCGTACCATGACTaGACATGGAACCCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: TGNLPHAQDWGGIPPSLESSYHD*TWNPGE
Trigger: CTCTCCTGGGTTCCATGTGCAGTCATGGTACGACGA...CTCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CACACCCCTCTGAACAGACCGGGCACAGCTTGGAAGCAAATGGAAACTCTCACCTCCTCCGTAGCTGGATaGACACTCAGAGCAGGGACG +
Preference number: 4 (lower is better)
Translates to: HTPLNRPGTAWKQMETLTSSVAG*TLRAGT
Trigger: CGTCCCTGCTCTGAGTGTCCATCCAGCTACGGAGGA...GGTGAGAGTTTCCATTTGCTTCCAAGCTGTGCCCGGTCTGTTCAGAGGGGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR CAA 72 bp ACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATaGTCACTCTTGACGGCGGCTGGGAGGCAGCCCTTA +
Preference number: 4 (lower is better)
Translates to: TRSPKPGGSDVQ*SLLTAAGRQPL
Trigger: TAAGGGCTGCCTCCCAGCCGCCGTCAAGAGTGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CAA 72 bp TGGTTTTCCTTACCACGTCAGCCTTGCCCTGCTGGCTaGGTGAAGGGTCCTACGGCAGCACTCCTTGTATCG +
Preference number: 4 (lower is better)
Translates to: WFSLPRQPCPAG*VKGPTAALLVS
Trigger: CGATACAAGGAGTGCTGCCGTAGGACCCTTCACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
3UTR CAA 72 bp GAATCGGCACACCCCTCTGAACAGACCGGGCACAGCTaGGAAGCAAATGGAAACTCTCACCCAACGCAGGAC +
Preference number: 4 (lower is better)
Translates to: ESAHPSEQTGHS*EANGNSHPTQD
Trigger: GTCCTGCGTTGGGTGAGAGTTTCCATTTGCTTCCAAGCTGTGCCCGGTCTGTTCAGAGGGGTGTGCCGATTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp AAGGAGTGTCTCAGTGAGCAGCTCCTGAGAGGAGGTGAGCCACCAGATGGGGACTCTGGTTTATGCTTGTaGGGCTTTTCTGCTCGGTGG +
Preference number: 4 (lower is better)
Translates to: KECLSEQLLRGGEPPDGDSGLCL*GFSARW
Trigger: CCACCGAGCAGAAAAGCCTCACAAGCATAAACCAGA...GTCCCCATCTGGTGGCTCACCTCCTCTCAGGAGCTGCTCACTGAGACACTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000034282.16
CDS-3UTR TCA 90 bp AAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTGTCTCAGTGAGCGGGTCTTCTTGGTCTTaGTCACCCTGGGCTGAACCC +
Preference number: 4 (lower is better)
Translates to: KPSPSTTKENMARSVSVSGSSWS*SPWAEP
Trigger: GGGTTCAGCCCAGGGTGATCAAGACCAAGAAGACCC...GCTCACTGAGACACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CAACCACAGGCCACTCCATTAACCCCCATGAGGAATGTGCCAGGAATCTACTCCGGGTCTTCTTGGTCTTaGTCACCCTGGGCTGAACCC +
Preference number: 4 (lower is better)
Translates to: QPQATPLTPMRNVPGIYSGSSWS*SPWAEP
Trigger: GGGTTCAGCCCAGGGTGATCAAGACCAAGAAGACCC...GGAGTAGATTCCTGGCACATTCCTCATGGGGGTTAATGGAGTGGCCTGTGGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp ACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGCGTGGATCCTTTGCATaGGTCCTTCATCTTGGTGTC +
Preference number: 4 (lower is better)
Translates to: TGNLPHAQDWGGIPPSLERGSFA*VLHLGV
Trigger: GACACCAAGATGAAGGACTCATGCAAAGGATCCACG...CTCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CTCATGAGGGGGAAGGTGCTCGGTCACCCTCACCAAAGGCCATGGAGGCCCAGGCATTTTTCTGAGACTTaGCAAAGAAGGGTACCATCC +
Preference number: 4 (lower is better)
Translates to: LMRGKVLGHPHQRPWRPRHFSET*QRRVPS
Trigger: GGATGGTACCCTTCTTTGTCAAGTCTCAGAAAAATG...CCTGGGCCTCCATGGCCTTTGGTGAGGGTGACCGAGCACCTTCCCCCTCATGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp GAGGCAGCCCTTATTCTAAGAAGTGAGAAGACATCTGAGACCTGGAGCCTCTTGCAGGAGAGCGGTACCTaGCCCAGTGCACAGCCAGGT +
Preference number: 4 (lower is better)
Translates to: EAALILRSEKTSETWSLLQESGT*PSAQPG
Trigger: ACCTGGCTGTGCACTGGGGCAGGTACCGCTCTCCTG...CAAGAGGCTCCAGGTCTCAGATGTCTTCTCACTTCTTAGAATAAGGGCTGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTTGCAAAGCCAAACCCCAGAGGAGGACACCTAGATCTGCTGAGGGTGGGGCAGTGTGGCTCTGCATGCTaGTATTTGCTCAGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: LAKPNPRGGHLDLLRVGQCGSAC*YLLSSF
Trigger: GAAGCTGCTGAGCAAATACCAGCATGCAGAGCCACA...CTGCCCCACCCTCAGCAGATCTAGGTGTCCTCCTCTGGGGTTTGGCTTTGCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp AAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTGTCTCAGTGAGCGACATGGGTTTCCTCTaGAGCAGGGGGCGATTCCAC +
Preference number: 4 (lower is better)
Translates to: KPSPSTTKENMARSVSVSDMGFL*SRGRFH
Trigger: GTGGAATCGCCCCCTGCTCCAGAGGAAACCCATGTC...GCTCACTGAGACACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CAA 72 bp GGCAGCACTCCTTGTATCGGGAAGTTTCCCAGATGTTaGGTAGCAACCAGAGGTCCCCTTCCACAGACTGCG +
Preference number: 4 (lower is better)
Translates to: GSTPCIGKFPRC*VATRGPLPQTA
Trigger: CGCAGTCTGTGGAAGGGGACCTCTGGTTGCTACCAAACATCTGGGAAACTTCCCGATACAAGGAGTGCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp GGAGGCCCAGGACGTTCAATGACACCAAAAGGAAGATTCCTGACTCTCTGTCACCACCTCGTCGTACCATaGCTGCACATGGAACCCAGG +
Preference number: 4 (lower is better)
Translates to: GGPGRSMTPKGRFLTLCHHLVVP*LHMEPR
Trigger: CCTGGGTTCCATGTGCAGTCATGGTACGACGAGGTG...GTGACAGAGAGTCAGGAATCTTCCTTTTGGTGTCATTGAACGTCCTGGGCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp GGGTCCTACGGCAGCACTCCTTGTATCGGGAAGTTTCCCAGATGTTTGGTAGCATTGATCACCCTGGGCTaGACCCAGACATGGGTTTCC +
Preference number: 4 (lower is better)
Translates to: GSYGSTPCIGKFPRCLVALITLG*TQTWVS
Trigger: GGAAACCCATGTCTGGGTTCAGCCCAGGGTGATCAA...TGCTACCAAACATCTGGGAAACTTCCCGATACAAGGAGTGCTGCCGTAGGACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp AAGGAGTGTCTCAGTGAGCAGCTCCTGAGAGGAGGTGAGCCACCAGATGGGGACCGTCTCTGTCACTTTTaGCACAGTGAAGGAGCTAGA +
Preference number: 4 (lower is better)
Translates to: KECLSEQLLRGGEPPDGDRLCHF*HSEGAR
Trigger: TCTAGCTCCTTCACTGTGTCAAAAGTGACAGAGACG...GTCCCCATCTGGTGGCTCACCTCCTCTCAGGAGCTGCTCACTGAGACACTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCACGGTACCTGCCCCAGTaGACAGCCAGGTTCTGCCCG +
Preference number: 4 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSRYLPQ*TARFCP
Trigger: CGGGCAGAACCTGGCTGTGCACTGGGGCAGGTACCG...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp CCATGGAGGCCCAGGACGTTCAATGACACCAAAAGGAAGATTCCTGACTCTCTGAGACCTTCGCCTTGTTaGTCAGACAGCCTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: PWRPRTFNDTKRKIPDSLRPSPC*SDSLLG
Trigger: GCCCAGCAGGCTGTCTGAGCAACAAGGCGAAGGTCT...CAGAGAGTCAGGAATCTTCCTTTTGGTGTCATTGAACGTCCTGGGCCTCCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CACACCCCTCTGAACAGACCGGGCACAGCTTGGAAGCAAATGGAAACTCTCACCCCAGGCTCGTGGTGTTaGGAAGGAAAAAGGCCTGTA +
Preference number: 4 (lower is better)
Translates to: HTPLNRPGTAWKQMETLTPGSWC*EGKRPV
Trigger: TACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGG...GGTGAGAGTTTCCATTTGCTTCCAAGCTGTGCCCGGTCTGTTCAGAGGGGTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTCACAGCCGATCTTGTTaGTGGTGGCCCAGACCATCT +
Preference number: 4 (lower is better)
Translates to: LRVRKPSPSTTKENMARSHSRSC*WWPRPS
Trigger: AGATGGTCTGGGCCACCACCAACAAGATCGGCTGTG...ACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGGTACCTGTTACACGTaGATCCTTTGCATGAGTCCT +
Preference number: 4 (lower is better)
Translates to: HRQSAPCSGLGWDSTFSRGTCYT*ILCMSP
Trigger: AGGACTCATGCAAAGGATCCACGTGTAACAGGTACC...TCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp AAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTGTCTCAGTGAGCCAGCCTGCTGGGCACTaGTACCTGTTACACGTGGAT +
Preference number: 4 (lower is better)
Translates to: KPSPSTTKENMARSVSVSQPAGH*YLLHVD
Trigger: ATCCACGTGTAACAGGTACCAGTGCCCAGCAGGCTG...GCTCACTGAGACACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp GAGGCAGCCCTTATTCTAAGAAGTGAGAAGACATCTGAGACCTGGAGCCTCTTGGGGTCTTCTTGGTCTTaGTCACCCTGGGCTGAACCC +
Preference number: 4 (lower is better)
Translates to: EAALILRSEKTSETWSLLGSSWS*SPWAEP
Trigger: GGGTTCAGCCCAGGGTGATCAAGACCAAGAAGACCC...CAAGAGGCTCCAGGTCTCAGATGTCTTCTCACTTCTTAGAATAAGGGCTGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGTCCATGCCATTTTTCTaGGACTTGACAAAGAAGGGT +
Preference number: 4 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLSMPFF*DLTKKG
Trigger: ACCCTTCTTTGTCAAGTCTCAGAAAAATGGCATGGA...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp CAACCACAGGCCACTCCATTAACCCCCATGAGGAATGTGCCAGGAATCTACTCCTCGTCGTACCATGACTaGACATGGAACCCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: QPQATPLTPMRNVPGIYSSSYHD*TWNPGE
Trigger: CTCTCCTGGGTTCCATGTGCAGTCATGGTACGACGA...GGAGTAGATTCCTGGCACATTCCTCATGGGGGTTAATGGAGTGGCCTGTGGTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp GGAGGCCCAGGACGTTCAATGACACCAAAAGGAAGATTCCTGACTCTCTGTCACGTTGCTCAGACAGCCTaGTGGGCACTGGTACCTGTT +
Preference number: 4 (lower is better)
Translates to: GGPGRSMTPKGRFLTLCHVAQTA*WALVPV
Trigger: AACAGGTACCAGTGCCCAGCAGGCTGTCTGAGCAAC...GTGACAGAGAGTCAGGAATCTTCCTTTTGGTGTCATTGAACGTCCTGGGCCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ATGGTAGGGAAGGCTCCTGATGTATTGGTCCTCCATGAGACCAAAGGTCATGTGAGACCTTCGCCTTGTTaGTCAGACAGCCTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: MVGKAPDVLVLHETKGHVRPSPC*SDSLLG
Trigger: GCCCAGCAGGCTGTCTGAGCAACAAGGCGAAGGTCT...CACATGACCTTTGGTCTCATGGAGGACCAATACATCAGGAGCCTTCCCTACCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTTACCATGACTGCACATaGAACCCAGGAGAGCGGTAC +
Preference number: 4 (lower is better)
Translates to: LRVRKPSPSTTKENMARSYHDCT*NPGERY
Trigger: GTACCGCTCTCCTGGGTTCCATGTGCAGTCATGGTA...ACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGCAATCCAGTTTCCCTTaGGAGAATAATTGCAGACGA +
Preference number: 4 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLQSSFP*ENNCRR
Trigger: TCGTCTGCAATTATTCTCCCAAGGGAAACTGGATTG...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTTGCAAAGCCAAACCCCAGAGGAGGACACCTAGATCTGCTGAGGGTGGGGCAGTATCAGCATAGATGTTaGTTCCATACACAGGAGCCC +
Preference number: 4 (lower is better)
Translates to: LAKPNPRGGHLDLLRVGQYQHRC*FHTQEP
Trigger: GGGCTCCTGTGTATGGAACCAACATCTATGCTGATA...CTGCCCCACCCTCAGCAGATCTAGGTGTCCTCCTCTGGGGTTTGGCTTTGCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp AAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTGTCTCAGTGAGCCGTGGATCCTTTGCATaGGTCCTTCATCTTGGTGTC +
Preference number: 4 (lower is better)
Translates to: KPSPSTTKENMARSVSVSRGSFA*VLHLGV
Trigger: GACACCAAGATGAAGGACTCATGCAAAGGATCCACG...GCTCACTGAGACACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp CACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGACATTTTTCTGAGACTTaGCAAAGAAGGGTACCATCC +
Preference number: 4 (lower is better)
Translates to: HRQSAPCSGLGWDSTFSRHFSET*QRRVPS
Trigger: GGATGGTACCCTTCTTTGTCAAGTCTCAGAAAAATG...TCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp ACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGCATTTTTCTGAGACTTaGCAAAGAAGGGTACCATCC +
Preference number: 4 (lower is better)
Translates to: TGNLPHAQDWGGIPPSLEHFSET*QRRVPS
Trigger: GGATGGTACCCTTCTTTGTCAAGTCTCAGAAAAATG...CTCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ATGGTAGGGAAGGCTCCTGATGTATTGGTCCTCCATGAGACCAAAGGTCATGTGGTTGCTCAGACAGCCTaGTGGGCACTGGTACCTGTT +
Preference number: 4 (lower is better)
Translates to: MVGKAPDVLVLHETKGHVVAQTA*WALVPV
Trigger: AACAGGTACCAGTGCCCAGCAGGCTGTCTGAGCAAC...CACATGACCTTTGGTCTCATGGAGGACCAATACATCAGGAGCCTTCCCTACCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp ACAGAAGCATGCTTCATTTTACAGTGGGTTTGGACCAGGCTCCTAAGTGATGGGAGCCTCCTCCGTAGCTaGATGGACACTCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: TEACFILQWVWTRLLSDGSLLRS*MDTQSR
Trigger: CCTGCTCTGAGTGTCCATCCAGCTACGGAGGAGGCT...CCCATCACTTAGGAGCCTGGTCCAAACCCACTGTAAAATGAAGCATGCTTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTTGCAAAGCCAAACCCCAGAGGAGGACACCTAGATCTGCTGAGGGTGGGGCAGCATGAAGTTGATGACTaGGGTCTTCTTGGTCTTGAT +
Preference number: 4 (lower is better)
Translates to: LAKPNPRGGHLDLLRVGQHEVDD*GLLGLD
Trigger: ATCAAGACCAAGAAGACCCCAGTCATCAACTTCATG...CTGCCCCACCCTCAGCAGATCTAGGTGTCCTCCTCTGGGGTTTGGCTTTGCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp GAGGCAGCCCTTATTCTAAGAAGTGAGAAGACATCTGAGACCTGGAGCCTCTTGCTGCATGCTGGTATTTaGTCAGCAGCTTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: EAALILRSEKTSETWSLLLHAGI*SAASPG
Trigger: GCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAG...CAAGAGGCTCCAGGTCTCAGATGTCTTCTCACTTCTTAGAATAAGGGCTGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CCAGACAAGAGCCCCATTCATGACATATCTCAAACCTGTATCCTCAGGGTTCGAAGCCGATCTTGTTGGTaGTGGCCCAGACCATCTGTG +
Preference number: 4 (lower is better)
Translates to: PDKSPIHDISQTCILRVRSRSCW*WPRPSV
Trigger: CACAGATGGTCTGGGCCACCACCAACAAGATCGGCT...TCGAACCCTGAGGATACAGGTTTGAGATATGTCATGAATGGGGCTCTTGTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCAGACATGGGTTTCCTCTaGAGCAGGGGGCGATTCCAC +
Preference number: 4 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSDMGFL*SRGRFH
Trigger: GTGGAATCGCCCCCTGCTCCAGAGGAAACCCATGTC...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp CTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTCCTTGGGAGAATAATTaGAGACGAGATACACGGCAT +
Preference number: 4 (lower is better)
Translates to: LRVRKPSPSTTKENMARSPWENN*RRDTRH
Trigger: ATGCCGTGTATCTCGTCTGCAATTATTCTCCCAAGG...ACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp CTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTTACACGTGGATCCTTTaGATGAGTCCTTCATCTTGG +
Preference number: 4 (lower is better)
Translates to: LRVRKPSPSTTKENMARSYTWIL*MSPSSW
Trigger: CCAAGATGAAGGACTCATGCAAAGGATCCACGTGTA...ACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CCAGACAAGAGCCCCATTCATGACATATCTCAAACCTGTATCCTCAGGGTTCGACCAGGCTCGTGGTGTTaGGAAGGAAAAAGGCCTGTA +
Preference number: 4 (lower is better)
Translates to: PDKSPIHDISQTCILRVRPGSWC*EGKRPV
Trigger: TACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGG...TCGAACCCTGAGGATACAGGTTTGAGATATGTCATGAATGGGGCTCTTGTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp GGAGGCCCAGGACGTTCAATGACACCAAAAGGAAGATTCCTGACTCTCTGTCACGGTACCTGTTACACGTaGATCCTTTGCATGAGTCCT +
Preference number: 4 (lower is better)
Translates to: GGPGRSMTPKGRFLTLCHGTCYT*ILCMSP
Trigger: AGGACTCATGCAAAGGATCCACGTGTAACAGGTACC...GTGACAGAGAGTCAGGAATCTTCCTTTTGGTGTCATTGAACGTCCTGGGCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
3UTR CAA 72 bp GTACAGACTCACACAGCAAGTTCCCTGAAGATGGGATaGGCTGCTCATTCTAGAAACCCAGAAGGGGTATGG +
Preference number: 4 (lower is better)
Translates to: VQTHTASSLKMG*AAHSRNPEGVW
Trigger: CCATACCCCTTCTGGGTTTCTAGAATGAGCAGCCAATCCCATCTTCAGGGAACTTGCTGTGTGAGTCTGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp GGTTTTGTTTCCTCCAGTTTCAAACTATTGATGAAGGTGATCGATCGAGGCTGCGTTGCTCAGACAGCCTaGTGGGCACTGGTACCTGTT +
Preference number: 4 (lower is better)
Translates to: GFVSSSFKLLMKVIDRGCVAQTA*WALVPV
Trigger: AACAGGTACCAGTGCCCAGCAGGCTGTCTGAGCAAC...GCAGCCTCGATCGATCACCTTCATCAATAGTTTGAAACTGGAGGAAACAAAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCACGATCTTGTTGGTGGTaGCCCAGACCATCTGTGTGT +
Preference number: 4 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSRSCWW*PRPSVC
Trigger: ACACACAGATGGTCTGGGCCACCACCAACAAGATCG...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CAACCACAGGCCACTCCATTAACCCCCATGAGGAATGTGCCAGGAATCTACTCCCATGAAGTTGATGACTaGGGTCTTCTTGGTCTTGAT +
Preference number: 4 (lower is better)
Translates to: QPQATPLTPMRNVPGIYSHEVDD*GLLGLD
Trigger: ATCAAGACCAAGAAGACCCCAGTCATCAACTTCATG...GGAGTAGATTCCTGGCACATTCCTCATGGGGGTTAATGGAGTGGCCTGTGGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp GGTTTTGTTTCCTCCAGTTTCAAACTATTGATGAAGGTGATCGATCGAGGCTGCTCGTCGTACCATGACTaGACATGGAACCCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: GFVSSSFKLLMKVIDRGCSSYHD*TWNPGE
Trigger: CTCTCCTGGGTTCCATGTGCAGTCATGGTACGACGA...GCAGCCTCGATCGATCACCTTCATCAATAGTTTGAAACTGGAGGAAACAAAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CCAGACAAGAGCCCCATTCATGACATATCTCAAACCTGTATCCTCAGGGTTCGAGGTACCTGTTACACGTaGATCCTTTGCATGAGTCCT +
Preference number: 4 (lower is better)
Translates to: PDKSPIHDISQTCILRVRGTCYT*ILCMSP
Trigger: AGGACTCATGCAAAGGATCCACGTGTAACAGGTACC...TCGAACCCTGAGGATACAGGTTTGAGATATGTCATGAATGGGGCTCTTGTCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTCAGCTCGGCATATGCTaGAAGAACTTTCATAAAACA +
Preference number: 4 (lower is better)
Translates to: LRVRKPSPSTTKENMARSQLGIC*KNFHKT
Trigger: TGTTTTATGAAAGTTCTTCCAGCATATGCCGAGCTG...ACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp AAACTGTCTCAAACAAATAAACATTTAACCCAACTAGGGGGAGAGATTTGTTCACCATCCCATTCCTGGTaGCATCCACCAGGCCACCTC +
Preference number: 4 (lower is better)
Translates to: KLSQTNKHLTQLGGEICSPSHSW*HPPGHL
Trigger: GAGGTGGCCTGGTGGATGTCACCAGGAATGGGATGG...TGAACAAATCTCTCCCCCTAGTTGGGTTAAATGTTTATTTGTTTGAGACAGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp ATGAGGTCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAATCATGTGTTCCATGTTaGAGGCAGGGGGATACACCT +
Preference number: 4 (lower is better)
Translates to: MRSRPAWTTIVKLSQTNKSCVPC*RQGDTP
Trigger: AGGTGTATCCCCCTGCCTCCAACATGGAACACATGA...TTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGACCTCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp ATGGTAGGGAAGGCTCCTGATGTATTGGTCCTCCATGAGACCAAAGGTCATGTGCAGCTCGGCATATGCTaGAAGAACTTTCATAAAACA +
Preference number: 4 (lower is better)
Translates to: MVGKAPDVLVLHETKGHVQLGIC*KNFHKT
Trigger: TGTTTTATGAAAGTTCTTCCAGCATATGCCGAGCTG...CACATGACCTTTGGTCTCATGGAGGACCAATACATCAGGAGCCTTCCCTACCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR TCA 90 bp ACAACCAGTGTGGCCCTGTTCATGCGAAGCACAAAAACTTACAATAAACTTTTGCGTGGATCCTTTGCATaGGTCCTTCATCTTGGTGTC +
Preference number: 4 (lower is better)
Translates to: TTSVALFMRSTKTYNKLLRGSFA*VLHLGV
Trigger: GACACCAAGATGAAGGACTCATGCAAAGGATCCACG...CAAAAGTTTATTGTAAGTTTTTGTGCTTCGCATGAACAGGGCCACACTGGTTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp TCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAACATTTACTGCATGCTGGTATTTaGTCAGCAGCTTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: SRPAWTTIVKLSQTNKHLLHAGI*SAASPG
Trigger: GCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAG...TAAATGTTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp TCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAACATTTACGATCTTGTTGGTGGTaGCCCAGACCATCTGTGTGT +
Preference number: 4 (lower is better)
Translates to: SRPAWTTIVKLSQTNKHLRSCWW*PRPSVC
Trigger: ACACACAGATGGTCTGGGCCACCACCAACAAGATCG...TAAATGTTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp AAACTGTCTCAAACAAATAAACATTTAACCCAACTAGGGGGAGAGATTTGTTCAAGCCTCCTCCGTAGCTaGATGGACACTCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: KLSQTNKHLTQLGGEICSSLLRS*MDTQSR
Trigger: CCTGCTCTGAGTGTCCATCCAGCTACGGAGGAGGCT...TGAACAAATCTCTCCCCCTAGTTGGGTTAAATGTTTATTTGTTTGAGACAGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR GCA 90 bp ATGAGGTCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAATACACGTGGATCCTTTaGATGAGTCCTTCATCTTGG +
Preference number: 4 (lower is better)
Translates to: MRSRPAWTTIVKLSQTNKYTWIL*MSPSSW
Trigger: CCAAGATGAAGGACTCATGCAAAGGATCCACGTGTA...TTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGACCTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCACAGCTCGGCATATGCTaGAAGAACTTTCATAAAACA +
Preference number: 4 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSQLGIC*KNFHKT
Trigger: TGTTTTATGAAAGTTCTTCCAGCATATGCCGAGCTG...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CCA 90 bp TCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAACATTTACAATCCAGTTTCCCTTaGGAGAATAATTGCAGACGA +
Preference number: 4 (lower is better)
Translates to: SRPAWTTIVKLSQTNKHLQSSFP*ENNCRR
Trigger: TCGTCTGCAATTATTCTCCCAAGGGAAACTGGATTG...TAAATGTTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS GCA 90 bp TGGAACCCAGGAGAGCGGTACCTGCCCCAGTGCACAGCCAGGTTCTaGCCGATGGACCTCAGAAGGCCGGCGGGCCCGTGCTCCCACAGG +
Preference number: 5 (lower is better)
Translates to: WNPGERYLPQCTARF*PMDLRRPAGPCSHR
Trigger: CCTGTGGGAGCACGGGCCCGCCGGCCTTCTGAGGTCCATCGGGCAGAACCTGGCTGTGCACTGGGGCAGGTACCGCTCTCCTGGGTTCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp GCTCTTCTCCACAGCGCGCAGGACACTGGATTCTCGGGCAGTGGGTaGCCGGCTTCTCGAAGGGGCACAGCTGTGCGACCGTGGCGTGGC +
Preference number: 5 (lower is better)
Translates to: ALLHSAQDTGFSGSG*PASRRGTAVRPWRG
Trigger: GCCACGCCACGGTCGCACAGCTGTGCCCCTTCGAGAAGCCGGCCACCCACTGCCCGAGAATCCAGTGTCCTGCGCGCTGTGGAGAAGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp CAGGAGAGCGGTACCTGCCCCAGTGCACAGCCAGGTTCTGCCCGATaGACCTCAGAAGGCCGGCGGGCCCGTGCTCCCACAGGCATCTAT +
Preference number: 5 (lower is better)
Translates to: QESGTCPSAQPGSAR*TSEGRRARAPTGIY
Trigger: ATAGATGCCTGTGGGAGCACGGGCCCGCCGGCCTTCTGAGGTCCATCGGGCAGAACCTGGCTGTGCACTGGGGCAGGTACCGCTCTCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp GATGGCTCTTCTCCACAGCGCGCAGGACACTGGATTCTCGGGCAGTaGGTGGCCGGCTTCTCGAAGGGGCACAGCTGTGCGACCGTGGCG +
Preference number: 5 (lower is better)
Translates to: DGSSPQRAGHWILGQ*VAGFSKGHSCATVA
Trigger: CGCCACGGTCGCACAGCTGTGCCCCTTCGAGAAGCCGGCCACCCACTGCCCGAGAATCCAGTGTCCTGCGCGCTGTGGAGAAGAGCCATC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 90 bp ACAGCCAGGTTCTGCCCGATGGACCTCAGAAGGCCGGCGGGCCCGTaGTCCCACAGGCATCTATGTGCCCACGCTGCTGCAGATCTCTCT +
Preference number: 5 (lower is better)
Translates to: TARFCPMDLRRPAGP*SHRHLCAHAAADLS
Trigger: AGAGAGATCTGCAGCAGCGTGGGCACATAGATGCCTGTGGGAGCACGGGCCCGCCGGCCTTCTGAGGTCCATCGGGCAGAACCTGGCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 90 bp AGTGGGTGCACATGGGGCCTGAGCACCGCTCCCGGCACCGTGGAGTaGACTCGTGGGGGTATGGGTAGGTGTAATCCTTCACCTCGTCGT +
Preference number: 5 (lower is better)
Translates to: SGCTWGLSTAPGTVE*TRGGMGRCNPSPRR
Trigger: ACGACGAGGTGAAGGATTACACCTACCCATACCCCCACGAGTGCACTCCACGGTGCCGGGAGCGGTGCTCAGGCCCCATGTGCACCCACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp TGGGTGGCCGGCTTCTCGAAGGGGCACAGCTGTGCGACCGTGGCGTaGCAGTCCACGGCCGTCTCTGTCACTTTTGACACAGTGAAGGAG +
Preference number: 5 (lower is better)
Translates to: WVAGFSKGHSCATVA*QSTAVSVTFDTVKE
Trigger: CTCCTTCACTGTGTCAAAAGTGACAGAGACGGCCGTGGACTGCCACGCCACGGTCGCACAGCTGTGCCCCTTCGAGAAGCCGGCCACCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CTCATGAGGGGGAAGGTGCTCGGTCACCCTCACCAAAGGCCATGGAGGCCCAGGGCACAGCCGATCTTGTaGGTGGTGGCCCAGACCATC +
Preference number: 5 (lower is better)
Translates to: LMRGKVLGHPHQRPWRPRAQPIL*VVAQTI
Trigger: GATGGTCTGGGCCACCACCAACAAGATCGGCTGTGC...CCTGGGCCTCCATGGCCTTTGGTGAGGGTGACCGAGCACCTTCCCCCTCATGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 90 bp TGGAGGCAGGGGGATACACCTGGCCTCGCAGCTTGTTGTGTAGCATaGGGATCTCTTGGCGGTCTGACATGGGGATGGCCCTGCGCACGC +
Preference number: 5 (lower is better)
Translates to: WRQGDTPGLAACCVA*GSLGGLTWGWPCAR
Trigger: GCGTGCGCAGGGCCATCCCCATGTCAGACCGCCAAGAGATCCTCATGCTACACAACAAGCTGCGAGGCCAGGTGTATCCCCCTGCCTCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp TGCTCGGTGGCAAAGATTGTTCAGGCAGCCTCCTCCGTAGCTGGATaGACACTCAGAGCAGGGACGGCCATGCTTGTAGGGGGCCTCGCC +
Preference number: 5 (lower is better)
Translates to: CSVAKIVQAASSVAG*TLRAGTAMLVGGLA
Trigger: GGCGAGGCCCCCTACAAGCATGGCCGTCCCTGCTCTGAGTGTCCATCCAGCTACGGAGGAGGCTGCCTGAACAATCTTTGCCACCGAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034282.16
CDS CCA 90 bp GACATGGGGATGGCCCTGCGCACGCGTGAGTGTGGCTCTGCATGCTaGTATTTGCTCAGCAGCTTCTCCAGGCTCGTGGTGTTGGGAAGG +
Preference number: 5 (lower is better)
Translates to: DMGMALRTRECGSAC*YLLSSFSRLVVLGR
Trigger: CCTTCCCAACACCACGAGCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAGAGCCACACTCACGCGTGCGCAGGGCCATCCCCATGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp GGATACACCTGGCCTCGCAGCTTGTTGTGTAGCATGAGGATCTCTTaGCGGTCTGACATGGGGATGGCCCTGCGCACGCGTGAGTGTGGC +
Preference number: 5 (lower is better)
Translates to: GYTWPRSLLCSMRIS*RSDMGMALRTRECG
Trigger: GCCACACTCACGCGTGCGCAGGGCCATCCCCATGTCAGACCGCCAAGAGATCCTCATGCTACACAACAAGCTGCGAGGCCAGGTGTATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp TTCTCGGTGGCAAAGATTGTTCAGGCAGCCTCCTCCGTAGCTGGATaGACACTCAGAGCAGGGACGGCCATGCTTGTAGGGGGCCTCGCC +
Preference number: 5 (lower is better)
Translates to: FSVAKIVQAASSVAG*TLRAGTAMLVGGLA
Trigger: GGCGAGGCCCCCTACAAGCATGGCCGTCCCTGCTCTGAGTGTCCATCCAGCTACGGAGGAGGCTGCCTGAACAATCTTTGCCACCGAGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCCATCTGTAAGGAGCTAGACGGCTaGTATTTGCTCAGGGACTCC +
Preference number: 5 (lower is better)
Translates to: PPGQSPGLARGFSLQPICKELDG*YLLRDS
Trigger: GGAGTCCCTGAGCAAATACAAGCCGTCTAGCTCCTT...ACAGATGGGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGTCTCGGTGGCAAAGATaGTTCAGGCAGCCTCCTCCG +
Preference number: 5 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLSRWQR*FRQPPP
Trigger: CGGAGGAGGCTGCCTGAACAATCTTTGCCACCGAGA...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 90 bp CTCGTGGGGGTATGGGTAGGTGTAATCCTTCACCTCGTCGTACCATaGCTGCACATGGAACCCAGGAGAGCGGTACCTGCCCCAGTGCAC +
Preference number: 5 (lower is better)
Translates to: LVGVWVGVILHLVVP*LHMEPRRAVPAPVH
Trigger: GTGCACTGGGGCAGGTACCGCTCTCCTGGGTTCCATGTGCAGTCATGGTACGACGAGGTGAAGGATTACACCTACCCATACCCCCACGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 90 bp GGATGGCCCTGCGCACGCGTGAGTGTGGCTCTGCATGCTGGTATTTaGTCAGCAGCTTCTCCAGGCTCGTGGTGTTGGGAAGGAAAAAGG +
Preference number: 5 (lower is better)
Translates to: GWPCARVSVALHAGI*SAASPGSWCWEGKR
Trigger: CCTTTTTCCTTCCCAACACCACGAGCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAGAGCCACACTCACGCGTGCGCAGGGCCATCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp AGACGTTCATGTTCCGACAGGTGTGCACGGCACAGCCGATCTTGTTaGTGGTGGCCCAGACCATCTGTGTGTAGTGGGTGCACATGGGGC +
Preference number: 5 (lower is better)
Translates to: RRSCSDRCARHSRSC*WWPRPSVCSGCTWG
Trigger: GCCCCATGTGCACCCACTACACACAGATGGTCTGGGCCACCACCAACAAGATCGGCTGTGCCGTGCACACCTGTCGGAACATGAACGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp TTTCTGCTCGGTGGCAAAGATTGTTCAGGCAGCCTCCTCCGTAGCTaGATGGACACTCAGAGCAGGGACGGCCATGCTTGTAGGGGGCCT +
Preference number: 5 (lower is better)
Translates to: FLLGGKDCSGSLLRS*MDTQSRDGHACRGP
Trigger: AGGCCCCCTACAAGCATGGCCGTCCCTGCTCTGAGTGTCCATCCAGCTACGGAGGAGGCTGCCTGAACAATCTTTGCCACCGAGCAGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034282.16
CDS CCA 90 bp GCTTTTCTCGGTGGCAAAGATTGTTCAGGCAGCCTCCTCCGTAGCTaGATGGACACTCAGAGCAGGGACGGCCATGCTTGTAGGGGGCCT +
Preference number: 5 (lower is better)
Translates to: AFLGGKDCSGSLLRS*MDTQSRDGHACRGP
Trigger: AGGCCCCCTACAAGCATGGCCGTCCCTGCTCTGAGTGTCCATCCAGCTACGGAGGAGGCTGCCTGAACAATCTTTGCCACCGAGAAAAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CCACCAGGGCAGAGCCCAGGTCTTGCTCGGGGCTTCTCCCTGCAGCCCATCTGTACTTGGGTCATGAAGTaGATGACTGGGGTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: PPGQSPGLARGFSLQPICTWVMK*MTGVFL
Trigger: CAAGAAGACCCCAGTCATCAACTTCATGACCCAAGT...ACAGATGGGCTGCAGGGAGAAGCCCCGAGCAAGACCTGGGCTCTGCCCTGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAAAGACCTTCGCCTTGTaGCTCAGACAGCCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: HRQSAPCSGLGWDSTFSRKTFAL*LRQPAG
Trigger: CCCAGCAGGCTGTCTGAGCAACAAGGCGAAGGTCTT...TCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 90 bp CTGTGCGACCGTGGCGTGGCAGTCCACGGCCGTCTCTGTCACTTTTaGCACAGTGAAGGAGCTAGACGGCTTGTATTTGCTCAGGGACTC +
Preference number: 5 (lower is better)
Translates to: LCDRGVAVHGRLCHF*HSEGARRLVFAQGL
Trigger: GAGTCCCTGAGCAAATACAAGCCGTCTAGCTCCTTCACTGTGTCAAAAGTGACAGAGACGGCCGTGGACTGCCACGCCACGGTCGCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 90 bp GCATTCTCCCAAGTGTCTCCCCAGACGTTCATGTTCCGACAGGTGTaGACGGCACAGCCGATCTTGTTGGTGGTGGCCCAGACCATCTGT +
Preference number: 5 (lower is better)
Translates to: AFSQVSPQTFMFRQV*TAQPILLVVAQTIC
Trigger: ACAGATGGTCTGGGCCACCACCAACAAGATCGGCTGTGCCGTGCACACCTGTCGGAACATGAACGTCTGGGGAGACACTTGGGAGAATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CTTGCAAAGCCAAACCCCAGAGGAGGACACCTAGATCTGCTGAGGGTGGGGCAGTCCAGGCTCGTGGTGTaGGGAAGGAAAAAGGCCTGT +
Preference number: 5 (lower is better)
Translates to: LAKPNPRGGHLDLLRVGQSRLVV*GRKKAC
Trigger: ACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGGA...CTGCCCCACCCTCAGCAGATCTAGGTGTCCTCCTCTGGGGTTTGGCTTTGCAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CAACCACAGGCCACTCCATTAACCCCCATGAGGAATGTGCCAGGAATCTACTCCACGGCACAGCCGATCTaGTTGGTGGTGGCCCAGACC +
Preference number: 5 (lower is better)
Translates to: QPQATPLTPMRNVPGIYSTAQPI*LVVAQT
Trigger: GGTCTGGGCCACCACCAACAAGATCGGCTGTGCCGT...GGAGTAGATTCCTGGCACATTCCTCATGGGGGTTAATGGAGTGGCCTGTGGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp AAGGAGTGTCTCAGTGAGCAGCTCCTGAGAGGAGGTGAGCCACCAGATGGGGACATGACTGGGGTCTTCTaGGTCTTGATCACCCTGGGC +
Preference number: 5 (lower is better)
Translates to: KECLSEQLLRGGEPPDGDMTGVF*VLITLG
Trigger: GCCCAGGGTGATCAAGACCAAGAAGACCCCAGTCAT...GTCCCCATCTGGTGGCTCACCTCCTCTCAGGAGCTGCTCACTGAGACACTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp ACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAGATGACTGGGGTCTTCTaGGTCTTGATCACCCTGGGC +
Preference number: 5 (lower is better)
Translates to: TGNLPHAQDWGGIPPSLEMTGVF*VLITLG
Trigger: GCCCAGGGTGATCAAGACCAAGAAGACCCCAGTCAT...CTCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CTTGCAAAGCCAAACCCCAGAGGAGGACACCTAGATCTGCTGAGGGTGGGGCAGCCAAAGACCTTCGCCTaGTTGCTCAGACAGCCTGCT +
Preference number: 5 (lower is better)
Translates to: LAKPNPRGGHLDLLRVGQPKTFA*LLRQPA
Trigger: AGCAGGCTGTCTGAGCAACAAGGCGAAGGTCTTTGG...CTGCCCCACCCTCAGCAGATCTAGGTGTCCTCCTCTGGGGTTTGGCTTTGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 90 bp GAGGGAGCCCACGTAGCTCTTCTTTTTGTCCACGGGCATCACATCTaGATAGCCACCAACCTCGTCAACGATGACACCTGCGTGCACAGC +
Preference number: 5 (lower is better)
Translates to: EGAHVALLFVHGHHI*IATNLVNDDTCVHS
Trigger: GCTGTGCACGCAGGTGTCATCGTTGACGAGGTTGGTGGCTATGCAGATGTGATGCCCGTGGACAAAAAGAAGAGCTACGTGGGCTCCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp CTGCATGCTGGTATTTGCTCAGCAGCTTCTCCAGGCTCGTGGTGTTaGGAAGGAAAAAGGCCTGTACTCCACAGACCAGCAGAGCCAGCC +
Preference number: 5 (lower is better)
Translates to: LHAGICSAASPGSWC*EGKRPVLHRPAEPA
Trigger: GGCTGGCTCTGCTGGTCTGTGGAGTACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTGCACAGCCGATCTTGTaGGTGGTGGCCCAGACCATC +
Preference number: 5 (lower is better)
Translates to: LRVRKPSPSTTKENMARSAQPIL*VVAQTI
Trigger: GATGGTCTGGGCCACCACCAACAAGATCGGCTGTGC...ACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CAACCACAGGCCACTCCATTAACCCCCATGAGGAATGTGCCAGGAATCTACTCCGCTCGGTGGCAAAGATaGTTCAGGCAGCCTCCTCCG +
Preference number: 5 (lower is better)
Translates to: QPQATPLTPMRNVPGIYSARWQR*FRQPPP
Trigger: CGGAGGAGGCTGCCTGAACAATCTTTGCCACCGAGC...GGAGTAGATTCCTGGCACATTCCTCATGGGGGTTAATGGAGTGGCCTGTGGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000034282.16
CDS-3UTR CAA 90 bp CACCGGCAATCTGCCCCATGCTCAGGACTGGGGTGGGATTCCACCTTCTCTAGAAAGGAGCTAGACGGCTaGTATTTGCTCAGGGACTCC +
Preference number: 5 (lower is better)
Translates to: HRQSAPCSGLGWDSTFSRKELDG*YLLRDS
Trigger: GGAGTCCCTGAGCAAATACAAGCCGTCTAGCTCCTT...TCTAGAGAAGGTGGAATCCCACCCCAGTCCTGAGCATGGGGCAGATTGCCGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp GTGGCTCTGCATGCTGGTATTTGCTCAGCAGCTTCTCCAGGCTCGTaGTGTTGGGAAGGAAAAAGGCCTGTACTCCACAGACCAGCAGAG +
Preference number: 5 (lower is better)
Translates to: VALHAGICSAASPGS*CWEGKRPVLHRPAE
Trigger: CTCTGCTGGTCTGTGGAGTACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAGAGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp GAGGCAGCCCTTATTCTAAGAAGTGAGAAGACATCTGAGACCTGGAGCCTCTTGACGGCACAGCCGATCTaGTTGGTGGTGGCCCAGACC +
Preference number: 5 (lower is better)
Translates to: EAALILRSEKTSETWSLLTAQPI*LVVAQT
Trigger: GGTCTGGGCCACCACCAACAAGATCGGCTGTGCCGT...CAAGAGGCTCCAGGTCTCAGATGTCTTCTCACTTCTTAGAATAAGGGCTGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGACTTGGGTCATGAAGTaGATGACTGGGGTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLTWVMK*MTGVFL
Trigger: CAAGAAGACCCCAGTCATCAACTTCATGACCCAAGT...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTAAGACCTTCGCCTTGTaGCTCAGACAGCCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: LRVRKPSPSTTKENMARSKTFAL*LRQPAG
Trigger: CCCAGCAGGCTGTCTGAGCAACAAGGCGAAGGTCTT...ACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 90 bp TGTCCACGGGCATCACATCTGCATAGCCACCAACCTCGTCAACGATaGCACCTGCGTGCACAGCGGCCTTACAAATGCTGGAAGTATCAG +
Preference number: 5 (lower is better)
Translates to: CPRASHLHSHQPRQR*HLRAQRPYKCWKYQ
Trigger: CTGATACTTCCAGCATTTGTAAGGCCGCTGTGCACGCAGGTGTCATCGTTGACGAGGTTGGTGGCTATGCAGATGTGATGCCCGTGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp CTGCAGATCTCTCTAGCTCCTCATCCCAAGTCATGTGTTCCATGTTaGAGGCAGGGGGATACACCTGGCCTCGCAGCTTGTTGTGTAGCA +
Preference number: 5 (lower is better)
Translates to: LQISLAPHPKSCVPC*RQGDTPGLAACCVA
Trigger: TGCTACACAACAAGCTGCGAGGCCAGGTGTATCCCCCTGCCTCCAACATGGAACACATGACTTGGGATGAGGAGCTAGAGAGATCTGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp AAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTGTCTCAGTGAGCACCTGGCCTCGCAGCTaGTTGTGTAGCATGAGGATC +
Preference number: 5 (lower is better)
Translates to: KPSPSTTKENMARSVSVSTWPRS*LCSMRI
Trigger: GATCCTCATGCTACACAACAAGCTGCGAGGCCAGGT...GCTCACTGAGACACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CTCAGGGTTCGAAAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTATGACTGGGGTCTTCTaGGTCTTGATCACCCTGGGC +
Preference number: 5 (lower is better)
Translates to: LRVRKPSPSTTKENMARSMTGVF*VLITLG
Trigger: GCCCAGGGTGATCAAGACCAAGAAGACCCCAGTCAT...ACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTTTCGAACCCTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp AAGGAGTGTCTCAGTGAGCAGCTCCTGAGAGGAGGTGAGCCACCAGATGGGGACACTTGGGTCATGAAGTaGATGACTGGGGTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: KECLSEQLLRGGEPPDGDTWVMK*MTGVFL
Trigger: CAAGAAGACCCCAGTCATCAACTTCATGACCCAAGT...GTCCCCATCTGGTGGCTCACCTCCTCTCAGGAGCTGCTCACTGAGACACTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CTCCTAAGTGATGGGAGCCAGGGCTCACCACACTCTTGGAGCCTGGGGATGCTGTTACACGTGGATCCTTaGCATGAGTCCTTCATCTTG +
Preference number: 5 (lower is better)
Translates to: LLSDGSQGSPHSWSLGMLLHVDP*HESFIL
Trigger: CAAGATGAAGGACTCATGCAAAGGATCCACGTGTAA...CAGCATCCCCAGGCTCCAAGAGTGTGGTGAGCCCTGGCTCCCATCACTTAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp AGTATCAGCATAGATGTTGGTTCCATACACAGGAGCCCAATAGGATaGCTCTTCTCCACAGCGCGCAGGACACTGGATTCTCGGGCAGTG +
Preference number: 5 (lower is better)
Translates to: SISIDVGSIHRSPIG*LFSTARRTLDSRAV
Trigger: CACTGCCCGAGAATCCAGTGTCCTGCGCGCTGTGGAGAAGAGCCATCCTATTGGGCTCCTGTGTATGGAACCAACATCTATGCTGATACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CCATGGAGGCCCAGGACGTTCAATGACACCAAAAGGAAGATTCCTGACTCTCTGTCCAGGCTCGTGGTGTaGGGAAGGAAAAAGGCCTGT +
Preference number: 5 (lower is better)
Translates to: PWRPRTFNDTKRKIPDSLSRLVV*GRKKAC
Trigger: ACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGGA...CAGAGAGTCAGGAATCTTCCTTTTGGTGTCATTGAACGTCCTGGGCCTCCATGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp TACTTTGCTCCTGTGAATGTGTGTGGTGCCTGTGGAGACCAGAGATCTCTTGAAGCACAGCCGATCTTGTaGGTGGTGGCCCAGACCATC +
Preference number: 5 (lower is better)
Translates to: YFAPVNVCGACGDQRSLEAQPIL*VVAQTI
Trigger: GATGGTCTGGGCCACCACCAACAAGATCGGCTGTGC...TTCAAGAGATCTCTGGTCTCCACAGGCACCACACACATTCACAGGAGCAAAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCAACGGCACAGCCGATCTaGTTGGTGGTGGCCCAGACC +
Preference number: 5 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSTAQPI*LVVAQT
Trigger: GGTCTGGGCCACCACCAACAAGATCGGCTGTGCCGT...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CAACCACAGGCCACTCCATTAACCCCCATGAGGAATGTGCCAGGAATCTACTCCCTAGACGGCTTGTATTaGCTCAGGGACTCCATGCCA +
Preference number: 5 (lower is better)
Translates to: QPQATPLTPMRNVPGIYSLDGLY*LRDSMP
Trigger: TGGCATGGAGTCCCTGAGCAAATACAAGCCGTCTAG...GGAGTAGATTCCTGGCACATTCCTCATGGGGGTTAATGGAGTGGCCTGTGGTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp GAGGCAGCCCTTATTCTAAGAAGTGAGAAGACATCTGAGACCTGGAGCCTCTTGTCTCGGTGGCAAAGATaGTTCAGGCAGCCTCCTCCG +
Preference number: 5 (lower is better)
Translates to: EAALILRSEKTSETWSLLSRWQR*FRQPPP
Trigger: CGGAGGAGGCTGCCTGAACAATCTTTGCCACCGAGA...CAAGAGGCTCCAGGTCTCAGATGTCTTCTCACTTCTTAGAATAAGGGCTGCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 90 bp ACAGCCTGCTGGGCACTGGTACCTGTTACACGTGGATCCTTTGCATaGGTCCTTCATCTTGGTGTCACAGTGGACCACTTGGGTCATGAA +
Preference number: 5 (lower is better)
Translates to: TACWALVPVTRGSFA*VLHLGVTVDHLGHE
Trigger: TTCATGACCCAAGTGGTCCACTGTGACACCAAGATGAAGGACTCATGCAAAGGATCCACGTGTAACAGGTACCAGTGCCCAGCAGGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp AAGCCTTCCCCCTCCACCACCAAAGAAAACATGGCAAGGAGTGTCTCAGTGAGCCATGAGTCCTTCATCTaGGTGTCACAGTGGACCACT +
Preference number: 5 (lower is better)
Translates to: KPSPSTTKENMARSVSVSHESFI*VSQWTT
Trigger: AGTGGTCCACTGTGACACCAAGATGAAGGACTCATG...GCTCACTGAGACACTCCTTGCCATGTTTTCTTTGGTGGTGGAGGGGGAAGGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CCCAGAAGGGGTATGGTTTTCCTTACCACGTCAGCCTTGCCCTGCTGGCTTGGTTTACACGTGGATCCTTaGCATGAGTCCTTCATCTTG +
Preference number: 5 (lower is better)
Translates to: PRRGMVFLTTSALPCWLGLHVDP*HESFIL
Trigger: CAAGATGAAGGACTCATGCAAAGGATCCACGTGTAA...ACCAAGCCAGCAGGGCAAGGCTGACGTGGTAAGGAAAACCATACCCCTTCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS CCA 90 bp CGTGCACAGCGGCCTTACAAATGCTGGAAGTATCAGCATAGATGTTaGTTCCATACACAGGAGCCCAATAGGATGGCTCTTCTCCACAGC +
Preference number: 5 (lower is better)
Translates to: RAQRPYKCWKYQHRC*FHTQEPNRMALLHS
Trigger: GCTGTGGAGAAGAGCCATCCTATTGGGCTCCTGTGTATGGAACCAACATCTATGCTGATACTTCCAGCATTTGTAAGGCCGCTGTGCACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCAAAGACCTTCGCCTTGTaGCTCAGACAGCCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSKTFAL*LRQPAG
Trigger: CCCAGCAGGCTGTCTGAGCAACAAGGCGAAGGTCTT...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp ACAGAAGCATGCTTCATTTTACAGTGGGTTTGGACCAGGCTCCTAAGTGATGGGCCAAAGACCTTCGCCTaGTTGCTCAGACAGCCTGCT +
Preference number: 5 (lower is better)
Translates to: TEACFILQWVWTRLLSDGPKTFA*LLRQPA
Trigger: AGCAGGCTGTCTGAGCAACAAGGCGAAGGTCTTTGG...CCCATCACTTAGGAGCCTGGTCCAAACCCACTGTAAAATGAAGCATGCTTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp GAGGCAGCCCTTATTCTAAGAAGTGAGAAGACATCTGAGACCTGGAGCCTCTTGCTAGACGGCTTGTATTaGCTCAGGGACTCCATGCCA +
Preference number: 5 (lower is better)
Translates to: EAALILRSEKTSETWSLLLDGLY*LRDSMP
Trigger: TGGCATGGAGTCCCTGAGCAAATACAAGCCGTCTAG...CAAGAGGCTCCAGGTCTCAGATGTCTTCTCACTTCTTAGAATAAGGGCTGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp GAGGCAGCCCTTATTCTAAGAAGTGAGAAGACATCTGAGACCTGGAGCCTCTTGAAGGAGCTAGACGGCTaGTATTTGCTCAGGGACTCC +
Preference number: 5 (lower is better)
Translates to: EAALILRSEKTSETWSLLKELDG*YLLRDS
Trigger: GGAGTCCCTGAGCAAATACAAGCCGTCTAGCTCCTT...CAAGAGGCTCCAGGTCTCAGATGTCTTCTCACTTCTTAGAATAAGGGCTGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCAACCTGGCCTCGCAGCTaGTTGTGTAGCATGAGGATC +
Preference number: 5 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSTWPRS*LCSMRI
Trigger: GATCCTCATGCTACACAACAAGCTGCGAGGCCAGGT...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp ATGGTAGGGAAGGCTCCTGATGTATTGGTCCTCCATGAGACCAAAGGTCATGTGCATGAGTCCTTCATCTaGGTGTCACAGTGGACCACT +
Preference number: 5 (lower is better)
Translates to: MVGKAPDVLVLHETKGHVHESFI*VSQWTT
Trigger: AGTGGTCCACTGTGACACCAAGATGAAGGACTCATG...CACATGACCTTTGGTCTCATGGAGGACCAATACATCAGGAGCCTTCCCTACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCACCAAAGACCTTCGCCTaGTTGCTCAGACAGCCTGCT +
Preference number: 5 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSPKTFA*LLRQPA
Trigger: AGCAGGCTGTCTGAGCAACAAGGCGAAGGTCTTTGG...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp TACTTTGCTCCTGTGAATGTGTGTGGTGCCTGTGGAGACCAGAGATCTCTTGAACTAGACGGCTTGTATTaGCTCAGGGACTCCATGCCA +
Preference number: 5 (lower is better)
Translates to: YFAPVNVCGACGDQRSLELDGLY*LRDSMP
Trigger: TGGCATGGAGTCCCTGAGCAAATACAAGCCGTCTAG...TTCAAGAGATCTCTGGTCTCCACAGGCACCACACACATTCACAGGAGCAAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS TCA 90 bp GAGCTAGACGGCTTGTATTTGCTCAGGGACTCCATGCCATTTTTCTaGGACTTGACAAAGAAGGGTACCATCCCATTCCTGGTGACATCC +
Preference number: 5 (lower is better)
Translates to: ELDGLYLLRDSMPFF*DLTKKGTIPFLVTS
Trigger: GGATGTCACCAGGAATGGGATGGTACCCTTCTTTGTCAAGTCTCAGAAAAATGGCATGGAGTCCCTGAGCAAATACAAGCCGTCTAGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp GATCCTTTGCATGAGTCCTTCATCTTGGTGTCACAGTGGACCACTTaGGTCATGAAGTTGATGACTGGGGTCTTCTTGGTCTTGATCACC +
Preference number: 5 (lower is better)
Translates to: DPLHESFILVSQWTT*VMKLMTGVFLVLIT
Trigger: GGTGATCAAGACCAAGAAGACCCCAGTCATCAACTTCATGACCCAAGTGGTCCACTGTGACACCAAGATGAAGGACTCATGCAAAGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 90 bp TTACACGTGGATCCTTTGCATGAGTCCTTCATCTTGGTGTCACAGTaGACCACTTGGGTCATGAAGTTGATGACTGGGGTCTTCTTGGTC +
Preference number: 5 (lower is better)
Translates to: LHVDPLHESFILVSQ*TTWVMKLMTGVFLV
Trigger: GACCAAGAAGACCCCAGTCATCAACTTCATGACCCAAGTGGTCCACTGTGACACCAAGATGAAGGACTCATGCAAAGGATCCACGTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp GGAGGCCCAGGACGTTCAATGACACCAAAAGGAAGATTCCTGACTCTCTGTCACTTACACGTGGATCCTTaGCATGAGTCCTTCATCTTG +
Preference number: 5 (lower is better)
Translates to: GGPGRSMTPKGRFLTLCHLHVDP*HESFIL
Trigger: CAAGATGAAGGACTCATGCAAAGGATCCACGTGTAA...GTGACAGAGAGTCAGGAATCTTCCTTTTGGTGTCATTGAACGTCCTGGGCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp ATGAGGTCAAGGCCAGCCTGGACTACCATAGTGAAACTGTCTCAAACAAATAAATCCAGGCTCGTGGTGTaGGGAAGGAAAAAGGCCTGT +
Preference number: 5 (lower is better)
Translates to: MRSRPAWTTIVKLSQTNKSRLVV*GRKKAC
Trigger: ACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGGA...TTTATTTGTTTGAGACAGTTTCACTATGGTAGTCCAGGCTGGCCTTGACCTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000132583.8
CDS-3UTR CAA 90 bp CACAGCTTAAAAACTAGGTCACCCAAACCAGGGGGAAGTGACGTTCAATTGTCACATGAGTCCTTCATCTaGGTGTCACAGTGGACCACT +
Preference number: 5 (lower is better)
Translates to: HSLKTRSPKPGGSDVQLSHESFI*VSQWTT
Trigger: AGTGGTCCACTGTGACACCAAGATGAAGGACTCATG...TGACAATTGAACGTCACTTCCCCCTGGTTTGGGTGACCTAGTTTTTAAGCTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 72 bp GGAGAGCGGTACCTGCCCCAGTGCACAGCCAGGTTCTaGCCGATGGACCTCAGAAGGCCGGCGGGCCCGTGC +
Preference number: 6 (lower is better)
Translates to: GERYLPQCTARF*PMDLRRPAGPC
Trigger: GCACGGGCCCGCCGGCCTTCTGAGGTCCATCGGGCAGAACCTGGCTGTGCACTGGGGCAGGTACCGCTCTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 72 bp GCAGTGGGTGGCCGGCTTCTCGAAGGGGCACAGCTGTaGGACCGTGGCGTGGCAGTCCACGGCCGTCTCTGT +
Preference number: 6 (lower is better)
Translates to: AVGGRLLEGAQL*DRGVAVHGRLC
Trigger: ACAGAGACGGCCGTGGACTGCCACGCCACGGTCGCACAGCTGTGCCCCTTCGAGAAGCCGGCCACCCACTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp GGTACCTGCCCCAGTGCACAGCCAGGTTCTGCCCGATaGACCTCAGAAGGCCGGCGGGCCCGTGCTCCCACA +
Preference number: 6 (lower is better)
Translates to: GTCPSAQPGSAR*TSEGRRARAPT
Trigger: TGTGGGAGCACGGGCCCGCCGGCCTTCTGAGGTCCATCGGGCAGAACCTGGCTGTGCACTGGGGCAGGTACC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp CACAGCGCGCAGGACACTGGATTCTCGGGCAGTGGGTaGCCGGCTTCTCGAAGGGGCACAGCTGTGCGACCG +
Preference number: 6 (lower is better)
Translates to: HSAQDTGFSGSG*PASRRGTAVRP
Trigger: CGGTCGCACAGCTGTGCCCCTTCGAGAAGCCGGCCACCCACTGCCCGAGAATCCAGTGTCCTGCGCGCTGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 72 bp TTCTGCCCGATGGACCTCAGAAGGCCGGCGGGCCCGTaGTCCCACAGGCATCTATGTGCCCACGCTGCTGCA +
Preference number: 6 (lower is better)
Translates to: FCPMDLRRPAGP*SHRHLCAHAAA
Trigger: TGCAGCAGCGTGGGCACATAGATGCCTGTGGGAGCACGGGCCCGCCGGCCTTCTGAGGTCCATCGGGCAGAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp TGGTGGCCCAGACCATCTGTGTGTAGTGGGTGCACATaGGGCCTGAGCACCGCTCCCGGCACCGTGGAGTGC +
Preference number: 6 (lower is better)
Translates to: WWPRPSVCSGCT*GLSTAPGTVEC
Trigger: GCACTCCACGGTGCCGGGAGCGGTGCTCAGGCCCCATGTGCACCCACTACACACAGATGGTCTGGGCCACCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp TCTCCACAGCGCGCAGGACACTGGATTCTCGGGCAGTaGGTGGCCGGCTTCTCGAAGGGGCACAGCTGTGCG +
Preference number: 6 (lower is better)
Translates to: SPQRAGHWILGQ*VAGFSKGHSCA
Trigger: CGCACAGCTGTGCCCCTTCGAGAAGCCGGCCACCCACTGCCCGAGAATCCAGTGTCCTGCGCGCTGTGGAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp TGGCCGGCTTCTCGAAGGGGCACAGCTGTGCGACCGTaGCGTGGCAGTCCACGGCCGTCTCTGTCACTTTTG +
Preference number: 6 (lower is better)
Translates to: WPASRRGTAVRP*RGSPRPSLSLL
Trigger: CAAAAGTGACAGAGACGGCCGTGGACTGCCACGCCACGGTCGCACAGCTGTGCCCCTTCGAGAAGCCGGCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 72 bp ACATGGGGCCTGAGCACCGCTCCCGGCACCGTGGAGTaGACTCGTGGGGGTATGGGTAGGTGTAATCCTTCA +
Preference number: 6 (lower is better)
Translates to: TWGLSTAPGTVE*TRGGMGRCNPS
Trigger: TGAAGGATTACACCTACCCATACCCCCACGAGTGCACTCCACGGTGCCGGGAGCGGTGCTCAGGCCCCATGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp GGCTTCTCGAAGGGGCACAGCTGTGCGACCGTGGCGTaGCAGTCCACGGCCGTCTCTGTCACTTTTGACACA +
Preference number: 6 (lower is better)
Translates to: GFSKGHSCATVA*QSTAVSVTFDT
Trigger: TGTGTCAAAAGTGACAGAGACGGCCGTGGACTGCCACGCCACGGTCGCACAGCTGTGCCCCTTCGAGAAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 72 bp TGCCTGACGGCGAAGATCCGGAAGGCGTTTCCGTTCTaGGGAGTGTTCAGGCTCTCCGACTGCACCCCGTTC +
Preference number: 6 (lower is better)
Translates to: CLTAKIRKAFPF*GVFRLSDCTPF
Trigger: GAACGGGGTGCAGTCGGAGAGCCTGAACACTCCTCAGAACGGAAACGCCTTCCGGATCTTCGCCGTCAGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp TGGCCTCGCAGCTTGTTGTGTAGCATGAGGATCTCTTaGCGGTCTGACATGGGGATGGCCCTGCGCACGCGT +
Preference number: 6 (lower is better)
Translates to: WPRSLLCSMRIS*RSDMGMALRTR
Trigger: ACGCGTGCGCAGGGCCATCCCCATGTCAGACCGCCAAGAGATCCTCATGCTACACAACAAGCTGCGAGGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 72 bp GGGGATACACCTGGCCTCGCAGCTTGTTGTGTAGCATaGGGATCTCTTGGCGGTCTGACATGGGGATGGCCC +
Preference number: 6 (lower is better)
Translates to: GDTPGLAACCVA*GSLGGLTWGWP
Trigger: GGGCCATCCCCATGTCAGACCGCCAAGAGATCCTCATGCTACACAACAAGCTGCGAGGCCAGGTGTATCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 72 bp CAAGTGTCTCCCCAGACGTTCATGTTCCGACAGGTGTaGACGGCACAGCCGATCTTGTTGGTGGTGGCCCAG +
Preference number: 6 (lower is better)
Translates to: QVSPQTFMFRQV*TAQPILLVVAQ
Trigger: CTGGGCCACCACCAACAAGATCGGCTGTGCCGTGCACACCTGTCGGAACATGAACGTCTGGGGAGACACTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp GACAGGTGTGCACGGCACAGCCGATCTTGTTGGTGGTaGCCCAGACCATCTGTGTGTAGTGGGTGCACATGG +
Preference number: 6 (lower is better)
Translates to: DRCARHSRSCWW*PRPSVCSGCTW
Trigger: CCATGTGCACCCACTACACACAGATGGTCTGGGCCACCACCAACAAGATCGGCTGTGCCGTGCACACCTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp TCCGACAGGTGTGCACGGCACAGCCGATCTTGTTGGTaGTGGCCCAGACCATCTGTGTGTAGTGGGTGCACA +
Preference number: 6 (lower is better)
Translates to: SDRCARHSRSCW*WPRPSVCSGCT
Trigger: TGTGCACCCACTACACACAGATGGTCTGGGCCACCACCAACAAGATCGGCTGTGCCGTGCACACCTGTCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp TGTTCCGACAGGTGTGCACGGCACAGCCGATCTTGTTaGTGGTGGCCCAGACCATCTGTGTGTAGTGGGTGC +
Preference number: 6 (lower is better)
Translates to: CSDRCARHSRSC*WWPRPSVCSGC
Trigger: GCACCCACTACACACAGATGGTCTGGGCCACCACCAACAAGATCGGCTGTGCCGTGCACACCTGTCGGAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CAA 72 bp CTGCGCACGCGTGAGTGTGGCTCTGCATGCTGGTATTaGCTCAGCAGCTTCTCCAGGCTCGTGGTGTTGGGA +
Preference number: 6 (lower is better)
Translates to: LRTRECGSACWY*LSSFSRLVVLG
Trigger: TCCCAACACCACGAGCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAGAGCCACACTCACGCGTGCGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 72 bp ATGACTGGGGTCTTCTTGGTCTTGATCACCCTGGGCTaGACCCAGACATGGGTTTCCTCTGGAGCAGGGGGC +
Preference number: 6 (lower is better)
Translates to: MTGVFLVLITLG*TQTWVSSGAGG
Trigger: GCCCCCTGCTCCAGAGGAAACCCATGTCTGGGTTCAGCCCAGGGTGATCAAGACCAAGAAGACCCCAGTCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 72 bp TGCGCACGCGTGAGTGTGGCTCTGCATGCTGGTATTTaGTCAGCAGCTTCTCCAGGCTCGTGGTGTTGGGAA +
Preference number: 6 (lower is better)
Translates to: CARVSVALHAGI*SAASPGSWCWE
Trigger: TTCCCAACACCACGAGCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAGAGCCACACTCACGCGTGCGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp GGTGGCAAAGATTGTTCAGGCAGCCTCCTCCGTAGCTaGATGGACACTCAGAGCAGGGACGGCCATGCTTGT +
Preference number: 6 (lower is better)
Translates to: GGKDCSGSLLRS*MDTQSRDGHAC
Trigger: ACAAGCATGGCCGTCCCTGCTCTGAGTGTCCATCCAGCTACGGAGGAGGCTGCCTGAACAATCTTTGCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CAA 72 bp ATGTTGGAGGCAGGGGGATACACCTGGCCTCGCAGCTaGTTGTGTAGCATGAGGATCTCTTGGCGGTCTGAC +
Preference number: 6 (lower is better)
Translates to: MLEAGGYTWPRS*LCSMRISWRSD
Trigger: GTCAGACCGCCAAGAGATCCTCATGCTACACAACAAGCTGCGAGGCCAGGTGTATCCCCCTGCCTCCAACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CAA 90 bp TCTGCATGCTGGTATTTGCTCAGCAGCTTCTCCAGGCTCGTGGTGTaGGGAAGGAAAAAGGCCTGTACTCCACAGACCAGCAGAGCCAGC +
Preference number: 6 (lower is better)
Translates to: SACWYLLSSFSRLVV*GRKKACTPQTSRAS
Trigger: GCTGGCTCTGCTGGTCTGTGGAGTACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGGAGAAGCTGCTGAGCAAATACCAGCATGCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CAA 90 bp GCTGCAGATCTCTCTAGCTCCTCATCCCAAGTCATGTGTTCCATGTaGGAGGCAGGGGGATACACCTGGCCTCGCAGCTTGTTGTGTAGC +
Preference number: 6 (lower is better)
Translates to: AADLSSSSSQVMCSM*EAGGYTWPRSLLCS
Trigger: GCTACACAACAAGCTGCGAGGCCAGGTGTATCCCCCTGCCTCCAACATGGAACACATGACTTGGGATGAGGAGCTAGAGAGATCTGCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 72 bp GTATGGGTAGGTGTAATCCTTCACCTCGTCGTACCATaGCTGCACATGGAACCCAGGAGAGCGGTACCTGCC +
Preference number: 6 (lower is better)
Translates to: VWVGVILHLVVP*LHMEPRRAVPA
Trigger: GGCAGGTACCGCTCTCCTGGGTTCCATGTGCAGTCATGGTACGACGAGGTGAAGGATTACACCTACCCATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp TCTCTAGCTCCTCATCCCAAGTCATGTGTTCCATGTTaGAGGCAGGGGGATACACCTGGCCTCGCAGCTTGT +
Preference number: 6 (lower is better)
Translates to: SLAPHPKSCVPC*RQGDTPGLAAC
Trigger: ACAAGCTGCGAGGCCAGGTGTATCCCCCTGCCTCCAACATGGAACACATGACTTGGGATGAGGAGCTAGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp ACCTTCGCCTTGTTGCTCAGACAGCCTGCTGGGCACTaGTACCTGTTACACGTGGATCCTTTGCATGAGTCC +
Preference number: 6 (lower is better)
Translates to: TFALLLRQPAGH*YLLHVDPLHES
Trigger: GGACTCATGCAAAGGATCCACGTGTAACAGGTACCAGTGCCCAGCAGGCTGTCTGAGCAACAAGGCGAAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp GCCAAAGACCTTCGCCTTGTTGCTCAGACAGCCTGCTaGGCACTGGTACCTGTTACACGTGGATCCTTTGCA +
Preference number: 6 (lower is better)
Translates to: AKDLRLVAQTAC*ALVPVTRGSFA
Trigger: TGCAAAGGATCCACGTGTAACAGGTACCAGTGCCCAGCAGGCTGTCTGAGCAACAAGGCGAAGGTCTTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp GGTATTTGCTCAGCAGCTTCTCCAGGCTCGTGGTGTTaGGAAGGAAAAAGGCCTGTACTCCACAGACCAGCA +
Preference number: 6 (lower is better)
Translates to: GICSAASPGSWC*EGKRPVLHRPA
Trigger: TGCTGGTCTGTGGAGTACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGGAGAAGCTGCTGAGCAAATACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CAA 72 bp TGGTATTTGCTCAGCAGCTTCTCCAGGCTCGTGGTGTaGGGAAGGAAAAAGGCCTGTACTCCACAGACCAGC +
Preference number: 6 (lower is better)
Translates to: WYLLSSFSRLVV*GRKKACTPQTS
Trigger: GCTGGTCTGTGGAGTACAGGCCTTTTTCCTTCCCAACACCACGAGCCTGGAGAAGCTGCTGAGCAAATACCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CAA 72 bp CCTGCTGGGCACTGGTACCTGTTACACGTGGATCCTTaGCATGAGTCCTTCATCTTGGTGTCACAGTGGACC +
Preference number: 6 (lower is better)
Translates to: PAGHWYLLHVDP*HESFILVSQWT
Trigger: GGTCCACTGTGACACCAAGATGAAGGACTCATGCAAAGGATCCACGTGTAACAGGTACCAGTGCCCAGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 72 bp CTGCTGGGCACTGGTACCTGTTACACGTGGATCCTTTaGATGAGTCCTTCATCTTGGTGTCACAGTGGACCA +
Preference number: 6 (lower is better)
Translates to: LLGTGTCYTWIL*MSPSSWCHSGP
Trigger: TGGTCCACTGTGACACCAAGATGAAGGACTCATGCAAAGGATCCACGTGTAACAGGTACCAGTGCCCAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 72 bp CACGTAGCTCTTCTTTTTGTCCACGGGCATCACATCTaGATAGCCACCAACCTCGTCAACGATGACACCTGC +
Preference number: 6 (lower is better)
Translates to: HVALLFVHGHHI*IATNLVNDDTC
Trigger: GCAGGTGTCATCGTTGACGAGGTTGGTGGCTATGCAGATGTGATGCCCGTGGACAAAAAGAAGAGCTACGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp AGGGGGCGATTCCACCTCGTTCATCATATCCACCTCTaGTTTATGCTTGTGAGGCTTTTCTGCTCGGTGGCA +
Preference number: 6 (lower is better)
Translates to: RGRFHLVHHIHL*FMLVRLFCSVA
Trigger: TGCCACCGAGCAGAAAAGCCTCACAAGCATAAACCAGAGGTGGATATGATGAACGAGGTGGAATCGCCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000034282.16
CDS CCA 72 bp GTCACAGTGGACCACTTGGGTCATGAAGTTGATGACTaGGGTCTTCTTGGTCTTGATCACCCTGGGCTGAAC +
Preference number: 6 (lower is better)
Translates to: VTVDHLGHEVDD*GLLGLDHPGLN
Trigger: GTTCAGCCCAGGGTGATCAAGACCAAGAAGACCCCAGTCATCAACTTCATGACCCAAGTGGTCCACTGTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 72 bp TGGGCACTGGTACCTGTTACACGTGGATCCTTTGCATaGGTCCTTCATCTTGGTGTCACAGTGGACCACTTG +
Preference number: 6 (lower is better)
Translates to: WALVPVTRGSFA*VLHLGVTVDHL
Trigger: CAAGTGGTCCACTGTGACACCAAGATGAAGGACTCATGCAAAGGATCCACGTGTAACAGGTACCAGTGCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS GCA 72 bp CATATCCACCTCTGGTTTATGCTTGTGAGGCTTTTCTaGTCGGTGGCAAAGATTGTTCAGGCAGCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: HIHLWFMLVRLF*SVAKIVQAASS
Trigger: GGAGGAGGCTGCCTGAACAATCTTTGCCACCGAGCAGAAAAGCCTCACAAGCATAAACCAGAGGTGGATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000034282.16
CDS CCA 72 bp ATAGATGTTGGTTCCATACACAGGAGCCCAATAGGATaGCTCTTCTCCACAGCGCGCAGGACACTGGATTCT +
Preference number: 6 (lower is better)
Translates to: IDVGSIHRSPIG*LFSTARRTLDS
Trigger: AGAATCCAGTGTCCTGCGCGCTGTGGAGAAGAGCCATCCTATTGGGCTCCTGTGTATGGAACCAACATCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CAA 90 bp CACTGGTACCTGTTACACGTGGATCCTTTGCATGAGTCCTTCATCTaGGTGTCACAGTGGACCACTTGGGTCATGAAGTTGATGACTGGG +
Preference number: 6 (lower is better)
Translates to: HWYLLHVDPLHESFI*VSQWTTWVMKLMTG
Trigger: CCCAGTCATCAACTTCATGACCCAAGTGGTCCACTGTGACACCAAGATGAAGGACTCATGCAAAGGATCCACGTGTAACAGGTACCAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CAA 72 bp ATCTTGGTGTCACAGTGGACCACTTGGGTCATGAAGTaGATGACTGGGGTCTTCTTGGTCTTGATCACCCTG +
Preference number: 6 (lower is better)
Translates to: ILVSQWTTWVMK*MTGVFLVLITL
Trigger: CAGGGTGATCAAGACCAAGAAGACCCCAGTCATCAACTTCATGACCCAAGTGGTCCACTGTGACACCAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CAA 72 bp CTGTTACACGTGGATCCTTTGCATGAGTCCTTCATCTaGGTGTCACAGTGGACCACTTGGGTCATGAAGTTG +
Preference number: 6 (lower is better)
Translates to: LLHVDPLHESFI*VSQWTTWVMKL
Trigger: CAACTTCATGACCCAAGTGGTCCACTGTGACACCAAGATGAAGGACTCATGCAAAGGATCCACGTGTAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS TCA 72 bp GGCTTGTATTTGCTCAGGGACTCCATGCCATTTTTCTaGGACTTGACAAAGAAGGGTACCATCCCATTCCTG +
Preference number: 6 (lower is better)
Translates to: GLYLLRDSMPFF*DLTKKGTIPFL
Trigger: CAGGAATGGGATGGTACCCTTCTTTGTCAAGTCTCAGAAAAATGGCATGGAGTCCCTGAGCAAATACAAGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8
CDS CCA 72 bp CGGCCTTACAAATGCTGGAAGTATCAGCATAGATGTTaGTTCCATACACAGGAGCCCAATAGGATGGCTCTT +
Preference number: 6 (lower is better)
Translates to: RPYKCWKYQHRC*FHTQEPNRMAL
Trigger: AAGAGCCATCCTATTGGGCTCCTGTGTATGGAACCAACATCTATGCTGATACTTCCAGCATTTGTAAGGCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000034282.16
ENSMUST00000108972.4
ENSMUST00000132583.8