Pregenerated sensors for CRISP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025774

Ensembl transcript IDs: ENSMUST00000026876.13, ENSMUST00000115340.8, ENSMUST00000115344.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCTGGAACCAAGATGTCCACTGCTGATGCTCAGGCAAAGCGCTCCTaGGCTGGGCGGACACCTATCCTCTGGCCGGGAAAGTGGCTGGAT	+
Preference number: 5 (lower is better) Translates to: PGTKMSTADAQAKRS*AGRTPILWPGKWLD Trigger: ATCCAGCCACTTTCCCGGCCAGAGGATAGGTGTCCGCCCAGCCCAGGAGCGCTTTGCCTGAGCATCAGCAGTGGACATCTTGGTTCCAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115344.2
CDS TCA 90 bp	TGCAGAATACACTTGGAGGAGTCCTGGAACCAAGATGTCCACTGCTaGTGCTCAGGCAAAGCGCTCCTGGGCTGGGCGGACACCTATCCT	+
Preference number: 5 (lower is better) Translates to: CRIHLEESWNQDVHC*CSGKALLGWADTYP Trigger: AGGATAGGTGTCCGCCCAGCCCAGGAGCGCTTTGCCTGAGCATCAGCAGTGGACATCTTGGTTCCAGGACTCCTCCAAGTGTATTCTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115344.2
CDS GCA 90 bp	ATGATTTCCCTCATGACAATAGTGACACACATAAAGATATGTAGCTaGCTTTTGTCTGCGACAAGCTGCAACATCACAGCCAACGAGGTA	+
Preference number: 5 (lower is better) Translates to: MISLMTIVTHIKICS*LLSATSCNITANEV Trigger: TACCTCGTTGGCTGTGATGTTGCAGCTTGTCGCAGACAAAAGGCAGCTACATATCTTTATGTGTGTCACTATTGTCATGAGGGAAATCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS CCA 90 bp	GACCATCTGAGTGTAGTGATCAGTTTCGATGTCATCATCTGTGGATaGCCATTCTCCATATTTGAAGTATTTGGACTCATTGAACCAGAT	+
Preference number: 5 (lower is better) Translates to: DHLSVVISFDVIICG*PFSIFEVFGLIEPD Trigger: ATCTGGTTCAATGAGTCCAAATACTTCAAATATGGAGAATGGCCATCCACAGATGATGACATCGAAACTGATCACTACACTCAGATGGTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS TCA 90 bp	GAAGGCGTTATGGGTATTGACAATTTCCTCTTGTGGTTCAGTTTGTaGTTCCGTGATCAGTTTATTATAGAGAGCTCTATCCAGTTTGAG	+
Preference number: 5 (lower is better) Translates to: EGVMGIDNFLLWFSL*FRDQFIIESSIQFE Trigger: CTCAAACTGGATAGAGCTCTCTATAATAAACTGATCACGGAATCACAAACTGAACCACAAGAGGAAATTGTCAATACCCATAACGCCTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS TCA 72 bp	CACTTGGAGGAGTCCTGGAACCAAGATGTCCACTGCTaGTGCTCAGGCAAAGCGCTCCTGGGCTGGGCGGAC	+
Preference number: 6 (lower is better) Translates to: HLEESWNQDVHC*CSGKALLGWAD Trigger: GTCCGCCCAGCCCAGGAGCGCTTTGCCTGAGCATCAGCAGTGGACATCTTGGTTCCAGGACTCCTCCAAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115344.2
CDS TCA 72 bp	ACAAGAAGCCTTGCAGAATGGCTGGACAGCTGGATGTaGGCACCCATAAAGTTTTACCTGCGTATCACAGTT	+
Preference number: 6 (lower is better) Translates to: TRSLAEWLDSWM*APIKFYLRITV Trigger: AACTGTGATACGCAGGTAAAACTTTATGGGTGCTCACATCCAGCTGTCCAGCCATTCTGCAAGGCTTCTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS CAA 72 bp	GGCGGGGACACTTTTCTCCTGAAGGCGTTATGGGTATaGACAATTTCCTCTTGTGGTTCAGTTTGTGATTCC	+
Preference number: 6 (lower is better) Translates to: GGDTFLLKALWV*TISSCGSVCDS Trigger: GGAATCACAAACTGAACCACAAGAGGAAATTGTCAATACCCATAACGCCTTCAGGAGAAAAGTGTCCCCGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS CAA 90 bp	TCCCTCATGACAATAGTGACACACATAAAGATATGTAGCTGCCTTTaGTCTGCGACAAGCTGCAACATCACAGCCAACGAGGTAGGTAGA	+
Preference number: 6 (lower is better) Translates to: SLMTIVTHIKICSCL*SATSCNITANEVGR Trigger: TCTACCTACCTCGTTGGCTGTGATGTTGCAGCTTGTCGCAGACAAAAGGCAGCTACATATCTTTATGTGTGTCACTATTGTCATGAGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS CCA 72 bp	GATAAATTTCACTGCCATACCTGTGCAGAATACACTTaGAGGAGTCCTGGAACCAAGATGTCCACTGCTGAT	+
Preference number: 6 (lower is better) Translates to: DKFHCHTCAEYT*RSPGTKMSTAD Trigger: ATCAGCAGTGGACATCTTGGTTCCAGGACTCCTCCAAGTGTATTCTGCACAGGTATGGCAGTGAAATTTATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000115344.2
CDS GCA 72 bp	CTCATGACAATAGTGACACACATAAAGATATGTAGCTaGCTTTTGTCTGCGACAAGCTGCAACATCACAGCC	+
Preference number: 6 (lower is better) Translates to: LMTIVTHIKICS*LLSATSCNITA Trigger: GGCTGTGATGTTGCAGCTTGTCGCAGACAAAAGGCAGCTACATATCTTTATGTGTGTCACTATTGTCATGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS CAA 72 bp	ACAATAGTGACACACATAAAGATATGTAGCTGCCTTTaGTCTGCGACAAGCTGCAACATCACAGCCAACGAG	+
Preference number: 6 (lower is better) Translates to: TIVTHIKICSCL*SATSCNITANE Trigger: CTCGTTGGCTGTGATGTTGCAGCTTGTCGCAGACAAAAGGCAGCTACATATCTTTATGTGTGTCACTATTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS CCA 72 bp	AGTGTAGTGATCAGTTTCGATGTCATCATCTGTGGATaGCCATTCTCCATATTTGAAGTATTTGGACTCATT	+
Preference number: 6 (lower is better) Translates to: SVVISFDVIICG*PFSIFEVFGLI Trigger: AATGAGTCCAAATACTTCAAATATGGAGAATGGCCATCCACAGATGATGACATCGAAACTGATCACTACACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS TCA 72 bp	ATGGGTATTGACAATTTCCTCTTGTGGTTCAGTTTGTaGTTCCGTGATCAGTTTATTATAGAGAGCTCTATC	+
Preference number: 6 (lower is better) Translates to: MGIDNFLLWFSL*FRDQFIIESSI Trigger: GATAGAGCTCTCTATAATAAACTGATCACGGAATCACAAACTGAACCACAAGAGGAAATTGTCAATACCCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS CAA 72 bp	TCGATGTCATCATCTGTGGATGGCCATTCTCCATATTaGAAGTATTTGGACTCATTGAACCAGATTTCAATA	+
Preference number: 6 (lower is better) Translates to: SMSSSVDGHSPY*KYLDSLNQISI Trigger: TATTGAAATCTGGTTCAATGAGTCCAAATACTTCAAATATGGAGAATGGCCATCCACAGATGATGACATCGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2
CDS TCA 72 bp	GTATTTGGACTCATTGAACCAGATTTCAATAACTTTTaGCCAGGAAGAGGGATAATGTTCCATAAGCATATT	+
Preference number: 6 (lower is better) Translates to: VFGLIEPDFNNF*PGRGIMFHKHI Trigger: AATATGCTTATGGAACATTATCCCTCTTCCTGGTCAAAAGTTATTGAAATCTGGTTCAATGAGTCCAAATAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026876.13 ENSMUST00000115340.8 ENSMUST00000115344.2

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