Pregenerated sensors for CRISP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023930Ensembl transcript IDs: ENSMUST00000024724.14, ENSMUST00000131699.8, ENSMUST00000144243.8, ENSMUST00000232709.2, ENSMUST00000233529.2, ENSMUST00000233679.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TATGTTCAGTGGCTCAGGTCTGGTAGGGCTGATTGTTTCATCAGATaGCTAAGCTTATATTATCTTAAACTGCATCCTCTGTATCATGAT | + |
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Preference number: 1 (lower is better) Translates to: YVQWLRSGRADCFIR*LSLYYLKLHPLYHD Trigger: ATCATGATACAGAGGATGCAGTTTAAGATAATATAAGCTTAGTCATCTGATGAAACAATCAGCCCTACCAGACCTGAGCCACTGAACATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| 3UTR GCA 90 bp | GGATGTTTCTATTATGAAATGAAAGCTTTTATTGGGCTCAGGATATaGATGGAGTACTTGTGTATAAAACCAAGCTATCAGGATTACTGG | + |
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Preference number: 1 (lower is better) Translates to: GCFYYEMKAFIGLRI*MEYLCIKPSYQDYW Trigger: CCAGTAATCCTGATAGCTTGGTTTTATACACAAGTACTCCATGCATATCCTGAGCCCAATAAAAGCTTTCATTTCATAATAGAAACATCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| 3UTR-3UTR GCA 90 bp | TTAAGTAAGAAGACAGAAGACACATGTAGATGTCAAGCTTCATCCTGGCAGGCGAATGACCTGATATGGTaGAACTTTCAAAATTCTCCA | + |
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Preference number: 2 (lower is better) Translates to: LSKKTEDTCRCQASSWQANDLIW*NFQNSP Trigger: TGGAGAATTTTGAAAGTTGCACCATATCAGGTCATT...CGCCTGCCAGGATGAAGCTTGACATCTACATGTGTCTTCTGTCTTCTTACTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| 3UTR-3UTR CCA 90 bp | TTAAGTAAGAAGACAGAAGACACATGTAGATGTCAAGCTTCATCCTGGCAGGCGTTAAAGCAGCAAAGTTaGTCCAATTCCAAAGTTGTT | + |
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Preference number: 2 (lower is better) Translates to: LSKKTEDTCRCQASSWQALKQQS*SNSKVV Trigger: AACAACTTTGGAATTGGACCAACTTTGCTGCTTTAA...CGCCTGCCAGGATGAAGCTTGACATCTACATGTGTCTTCTGTCTTCTTACTTAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| 3UTR-3UTR TCA 90 bp | TTCAAGGATTCACAGTTACTAAGTAAATCTTCAAAATCACAGCTATTGGTGCACCAAGGTGTTCCTTGTTaGTATGGGGTGCTCTTTTTC | + |
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Preference number: 2 (lower is better) Translates to: FKDSQLLSKSSKSQLLVHQGVPC*YGVLFF Trigger: GAAAAAGAGCACCCCATATCAACAAGGAACACCTTG...GTGCACCAATAGCTGTGATTTTGAAGATTTACTTAGTAACTGTGAATCCTTGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| 3UTR-3UTR GCA 90 bp | TCCTCATATAGTCTGTCCTGCTGCACACTGGGCATGTTAATGAATTTTGTCTTCAATGACCTGATATGGTaGAACTTTCAAAATTCTCCA | + |
|
Preference number: 2 (lower is better) Translates to: SSYSLSCCTLGMLMNFVFNDLIW*NFQNSP Trigger: TGGAGAATTTTGAAAGTTGCACCATATCAGGTCATT...GAAGACAAAATTCATTAACATGCCCAGTGTGCAGCAGGACAGACTATATGAGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| 3UTR CAA 90 bp | TTCAAGGATTCACAGTTACTAAGTAAATCTTCAAAATCACAGCTATaGGTGCACAGCCCATTTTCACAGTTATTGGGACAACTAGCACAA | + |
|
Preference number: 2 (lower is better) Translates to: FKDSQLLSKSSKSQL*VHSPFSQLLGQLAQ Trigger: TTGTGCTAGTTGTCCCAATAACTGTGAAAATGGGCTGTGCACCAATAGCTGTGATTTTGAAGATTTACTTAGTAACTGTGAATCCTTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| 3UTR-3UTR TCA 90 bp | TATTATGAAATGAAAGCTTTTATTGGGCTCAGGATATGCATGGAGTACTTGTGTATGATGGGCAGGATGTaGACGTTGATAAAACAGACA | + |
|
Preference number: 2 (lower is better) Translates to: YYEMKAFIGLRICMEYLCMMGRM*TLIKQT Trigger: TGTCTGTTTTATCAACGTTCACATCCTGCCCATCAT...ACACAAGTACTCCATGCATATCCTGAGCCCAATAAAAGCTTTCATTTCATAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| 3UTR-3UTR GCA 90 bp | ATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACAATGACCTGATATGGTaGAACTTTCAAAATTCTCCA | + |
|
Preference number: 2 (lower is better) Translates to: MYESRKERSLVIWDVTCHNDLIW*NFQNSP Trigger: TGGAGAATTTTGAAAGTTGCACCATATCAGGTCATT...GTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| 3UTR-3UTR CCA 90 bp | GATGTGAACGTTGATAAAACAGACACAAAAGCTGAATATTGGCATTCCAAGCAATTAAAGCAGCAAAGTTaGTCCAATTCCAAAGTTGTT | + |
|
Preference number: 2 (lower is better) Translates to: DVNVDKTDTKAEYWHSKQLKQQS*SNSKVV Trigger: AACAACTTTGGAATTGGACCAACTTTGCTGCTTTAA...TTGCTTGGAATGCCAATATTCAGCTTTTGTGTCTGTTTTATCAACGTTCACATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| 3UTR CCA 72 bp | GCTCAGGAAGCCAGTCAGGGGGTTAAGTATGTTCAGTaGCTCAGGTCTGGTAGGGCTGATTGTTTCATCAGA | + |
|
Preference number: 3 (lower is better) Translates to: AQEASQGVKYVQ*LRSGRADCFIR Trigger: TCTGATGAAACAATCAGCCCTACCAGACCTGAGCCACTGAACATACTTAACCCCCTGACTGGCTTCCTGAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| 3UTR-3UTR CAA 90 bp | AGCAACTCATGTTTACAGCCTGCTGAAGTCTTCAAGGATTCACAGTTACTAAGTAGCACAAGGTGTTCCTaGTTGATATGGGGTGCTCTT | + |
|
Preference number: 3 (lower is better) Translates to: SNSCLQPAEVFKDSQLLSSTRCS*LIWGAL Trigger: AAGAGCACCCCATATCAACAAGGAACACCTTGTGCT...ACTTAGTAACTGTGAATCCTTGAAGACTTCAGCAGGCTGTAAACATGAGTTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| 3UTR TCA 72 bp | ACCCGACTTTCTTGCGAGTGGATGATGGGCAGGATGTaGACGTTGATAAAACAGACACAAAAGCTGAATATT | + |
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Preference number: 3 (lower is better) Translates to: TRLSCEWMMGRM*TLIKQTQKLNI Trigger: AATATTCAGCTTTTGTGTCTGTTTTATCAACGTTCACATCCTGCCCATCATCCACTCGCAAGAAAGTCGGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| 3UTR-3UTR CAA 90 bp | ATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACCAGCCCATTCTTCCATaGCAGGTTAATTTAGGACAC | + |
|
Preference number: 3 (lower is better) Translates to: MYESRKERSLVIWDVTCHQPILP*QVNLGH Trigger: GTGTCCTAAATTAACCTGCAATGGAAGAATGGGCTG...GTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| 3UTR-3UTR CAA 90 bp | TATTATGAAATGAAAGCTTTTATTGGGCTCAGGATATGCATGGAGTACTTGTGTCAGTTTTTCAAAATTTaGCTCAGGAAGCCAGTCAGG | + |
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Preference number: 3 (lower is better) Translates to: YYEMKAFIGLRICMEYLCQFFKI*LRKPVR Trigger: CCTGACTGGCTTCCTGAGCAAAATTTTGAAAAACTG...ACACAAGTACTCCATGCATATCCTGAGCCCAATAAAAGCTTTCATTTCATAATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| 3UTR GCA 72 bp | TTTTTCAAAGTTCCAGAGGTGAATGACCTGATATGGTaGAACTTTCAAAATTCTCCACTTGATTCAGTTCAC | + |
|
Preference number: 3 (lower is better) Translates to: FFKVPEVNDLIW*NFQNSPLDSVH Trigger: GTGAACTGAATCAAGTGGAGAATTTTGAAAGTTGCACCATATCAGGTCATTCACCTCTGGAACTTTGAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| 3UTR TCA 72 bp | TATCCCAAGAACTTCAAGGATGTTTCTATTATGAAATaGAAGCTTTTATTGGGCTCAGGATATGCATGGAGT | + |
|
Preference number: 3 (lower is better) Translates to: YPKNFKDVSIMK*KLLLGSGYAWS Trigger: ACTCCATGCATATCCTGAGCCCAATAAAAGCTTTCATTTCATAATAGAAACATCCTTGAAGTTCTTGGGATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| 3UTR TCA 72 bp | TCTCCTTGTTTATCAGGGACAGAATATAGCAGAATATaGCAGAAAAGACAAATTTACATGCCCATCAAATGC | + |
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Preference number: 3 (lower is better) Translates to: SPCLSGTEYSRI*QKRQIYMPIKC Trigger: GCATTTGATGGGCATGTAAATTTGTCTTTTCTGTCATATTCTGCTATATTCTGTCCCTGATAAACAAGGAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| CDS-3UTR TCA 90 bp | TCCCCATCAGTCTCAACTAAGTCTGTACCCCTTCCTCATATAGTCTGTCCTGCTCAAGGTGTTCCTTGTTaGTATGGGGTGCTCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: SPSVSTKSVPLPHIVCPAQGVPC*YGVLFF Trigger: GAAAAAGAGCACCCCATATCAACAAGGAACACCTTG...AGCAGGACAGACTATATGAGGAAGGGGTACAGACTTAGTTGAGACTGATGGGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR TCA 90 bp | ATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACGATCCTTTCCTTCTGTaGGTGGTGATCGCAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: MYESRKERSLVIWDVTCHDPFLL*VVIAAA Trigger: TGCTGCTGCGATCACCACTCACAGAAGGAAAGGATC...GTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR TCA 90 bp | CATTTGGGATGTGACATGTCACTAATCTCCTATAGATTTTCCCCATCAGTCTCAGATCCTTTCCTTCTGTaGGTGGTGATCGCAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: HLGCDMSLISYRFSPSVSDPFLL*VVIAAA Trigger: TGCTGCTGCGATCACCACTCACAGAAGGAAAGGATC...TGAGACTGATGGGGAAAATCTATAGGAGATTAGTGACATGTCACATCCCAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR GCA 90 bp | TCCCCATCAGTCTCAACTAAGTCTGTACCCCTTCCTCATATAGTCTGTCCTGCTAATCACAGCTATTGGTaGACAGCCCATTTTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: SPSVSTKSVPLPHIVCPANHSYW*TAHFHS Trigger: ACTGTGAAAATGGGCTGTGCACCAATAGCTGTGATT...AGCAGGACAGACTATATGAGGAAGGGGTACAGACTTAGTTGAGACTGATGGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR TCA 90 bp | TTAAGTAAGAAGACAGAAGACACATGTAGATGTCAAGCTTCATCCTGGCAGGCGGAGGGTAGGATCAGTTaGCATATAGAGATTCTCACC | + |
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Preference number: 4 (lower is better) Translates to: LSKKTEDTCRCQASSWQAEGRIS*HIEILT Trigger: GGTGAGAATCTCTATATGTCAACTGATCCTACCCTC...CGCCTGCCAGGATGAAGCTTGACATCTACATGTGTCTTCTGTCTTCTTACTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR CCA 90 bp | TCCCCATCAGTCTCAACTAAGTCTGTACCCCTTCCTCATATAGTCTGTCCTGCTTGTTCCTTGTTGATATaGGGTGCTCTTTTTCATCAC | + |
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Preference number: 4 (lower is better) Translates to: SPSVSTKSVPLPHIVCPACSLLI*GALFHH Trigger: GTGATGAAAAAGAGCACCCCATATCAACAAGGAACA...AGCAGGACAGACTATATGAGGAAGGGGTACAGACTTAGTTGAGACTGATGGGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CCA 90 bp | TTAAGTAAGAAGACAGAAGACACATGTAGATGTCAAGCTTCATCCTGGCAGGCGCACAAACAAGTAGCCTaGCACTTTGTCTTGAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: LSKKTEDTCRCQASSWQAHKQVA*HFVLSN Trigger: GTTGCTCAAGACAAAGTGCCAGGCTACTTGTTTGTG...CGCCTGCCAGGATGAAGCTTGACATCTACATGTGTCTTCTGTCTTCTTACTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| 3UTR CAA 72 bp | TTGTCTTCACACAAACAAGTAGCCTGGCACTTTGTCTaGAGCAACTCATGTTTACAGCCTGCTGAAGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LSSHKQVAWHFV*SNSCLQPAEVF Trigger: GAAGACTTCAGCAGGCTGTAAACATGAGTTGCTCAAGACAAAGTGCCAGGCTACTTGTTTGTGTGAAGACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| CDS-3UTR TCA 90 bp | ATGTTAATGAATTTTGTCTTCACACAAACAAGTAGCCTGGCACTTTGTCTTGAGGATCCTTTCCTTCTGTaGGTGGTGATCGCAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: MLMNFVFTQTSSLALCLEDPFLL*VVIAAA Trigger: TGCTGCTGCGATCACCACTCACAGAAGGAAAGGATC...CTCAAGACAAAGTGCCAGGCTACTTGTTTGTGTGAAGACAAAATTCATTAACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| CDS-3UTR TCA 90 bp | TTAAGTAAGAAGACAGAAGACACATGTAGATGTCAAGCTTCATCCTGGCAGGCGTCATTGTACCAGCTTTaGATTACAGTTGACCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LSKKTEDTCRCQASSWQASLYQL*ITVDQR Trigger: CCTCTGGTCAACTGTAATTCAAAGCTGGTACAATGA...CGCCTGCCAGGATGAAGCTTGACATCTACATGTGTCTTCTGTCTTCTTACTTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR TCA 90 bp | TTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTGCCAGTAGGGTTAACTaGTCTCCTCAGCTCATTGTG | + |
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Preference number: 4 (lower is better) Translates to: LMYESRKERSLVIWDVTCASRVN*SPQLIV Trigger: CACAATGAGCTGAGGAGATCAGTTAACCCTACTGGC...ACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR TCA 90 bp | GATGTGAACGTTGATAAAACAGACACAAAAGCTGAATATTGGCATTCCAAGCAAGCCAGTAGGGTTAACTaGTCTCCTCAGCTCATTGTG | + |
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Preference number: 4 (lower is better) Translates to: DVNVDKTDTKAEYWHSKQASRVN*SPQLIV Trigger: CACAATGAGCTGAGGAGATCAGTTAACCCTACTGGC...TTGCTTGGAATGCCAATATTCAGCTTTTGTGTCTGTTTTATCAACGTTCACATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| CDS-3UTR TCA 90 bp | CATTTGGGATGTGACATGTCACTAATCTCCTATAGATTTTCCCCATCAGTCTCAGAGGGTAGGATCAGTTaGCATATAGAGATTCTCACC | + |
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Preference number: 4 (lower is better) Translates to: HLGCDMSLISYRFSPSVSEGRIS*HIEILT Trigger: GGTGAGAATCTCTATATGTCAACTGATCCTACCCTC...TGAGACTGATGGGGAAAATCTATAGGAGATTAGTGACATGTCACATCCCAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR TCA 90 bp | CATTTGGGATGTGACATGTCACTAATCTCCTATAGATTTTCCCCATCAGTCTCACAAGGTGTTCCTTGTTaGTATGGGGTGCTCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: HLGCDMSLISYRFSPSVSQGVPC*YGVLFF Trigger: GAAAAAGAGCACCCCATATCAACAAGGAACACCTTG...TGAGACTGATGGGGAAAATCTATAGGAGATTAGTGACATGTCACATCCCAAATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR TCA 90 bp | GAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACTAATCTCCTATAGACAAGGTGTTCCTTGTTaGTATGGGGTGCTCTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: EGKKPCHLGCDMSLISYRQGVPC*YGVLFF Trigger: GAAAAAGAGCACCCCATATCAACAAGGAACACCTTG...TCTATAGGAGATTAGTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CCA 90 bp | TTAAGTAAGAAGACAGAAGACACATGTAGATGTCAAGCTTCATCCTGGCAGGCGTGTTCCTTGTTGATATaGGGTGCTCTTTTTCATCAC | + |
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Preference number: 4 (lower is better) Translates to: LSKKTEDTCRCQASSWQACSLLI*GALFHH Trigger: GTGATGAAAAAGAGCACCCCATATCAACAAGGAACA...CGCCTGCCAGGATGAAGCTTGACATCTACATGTGTCTTCTGTCTTCTTACTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CCA 90 bp | CATTTGGGATGTGACATGTCACTAATCTCCTATAGATTTTCCCCATCAGTCTCACACAAACAAGTAGCCTaGCACTTTGTCTTGAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: HLGCDMSLISYRFSPSVSHKQVA*HFVLSN Trigger: GTTGCTCAAGACAAAGTGCCAGGCTACTTGTTTGTG...TGAGACTGATGGGGAAAATCTATAGGAGATTAGTGACATGTCACATCCCAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| 3UTR CAA 72 bp | ACAGTTATTGGGACAACTAGCACAAGGTGTTCCTTGTaGATATGGGGTGCTCTTTTTCATCACATTGTTACC | + |
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Preference number: 4 (lower is better) Translates to: TVIGTTSTRCSL*IWGALFHHIVT Trigger: GGTAACAATGTGATGAAAAAGAGCACCCCATATCAACAAGGAACACCTTGTGCTAGTTGTCCCAATAACTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| CDS-3UTR TCA 90 bp | GAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACTAATCTCCTATAGATCATTGTACCAGCTTTaGATTACAGTTGACCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: EGKKPCHLGCDMSLISYRSLYQL*ITVDQR Trigger: CCTCTGGTCAACTGTAATTCAAAGCTGGTACAATGA...TCTATAGGAGATTAGTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR TCA 90 bp | CATTTGGGATGTGACATGTCACTAATCTCCTATAGATTTTCCCCATCAGTCTCATCATTGTACCAGCTTTaGATTACAGTTGACCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: HLGCDMSLISYRFSPSVSSLYQL*ITVDQR Trigger: CCTCTGGTCAACTGTAATTCAAAGCTGGTACAATGA...TGAGACTGATGGGGAAAATCTATAGGAGATTAGTGACATGTCACATCCCAAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR GCA 90 bp | TTCACAGTTATTGGGACAACTAGCACAAGGTGTTCCTTGTTGATATGGGGTGCTTTGAGCATTTGTTGTTaGTTGTATGCTCCATTCCAT | + |
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Preference number: 4 (lower is better) Translates to: FTVIGTTSTRCSLLIWGALSICC*LYAPFH Trigger: ATGGAATGGAGCATACAAGCAACAACAAATGCTCAA...AGCACCCCATATCAACAAGGAACACCTTGTGCTAGTTGTCCCAATAACTGTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| CDS-3UTR GCA 90 bp | ATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACAATCACAGCTATTGGTaGACAGCCCATTTTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: MYESRKERSLVIWDVTCHNHSYW*TAHFHS Trigger: ACTGTGAAAATGGGCTGTGCACCAATAGCTGTGATT...GTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR GCA 90 bp | GAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACTAATCTCCTATAGAAATCACAGCTATTGGTaGACAGCCCATTTTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: EGKKPCHLGCDMSLISYRNHSYW*TAHFHS Trigger: ACTGTGAAAATGGGCTGTGCACCAATAGCTGTGATT...TCTATAGGAGATTAGTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR TCA 90 bp | GATGTGAACGTTGATAAAACAGACACAAAAGCTGAATATTGGCATTCCAAGCAAGAGGGTAGGATCAGTTaGCATATAGAGATTCTCACC | + |
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Preference number: 4 (lower is better) Translates to: DVNVDKTDTKAEYWHSKQEGRIS*HIEILT Trigger: GGTGAGAATCTCTATATGTCAACTGATCCTACCCTC...TTGCTTGGAATGCCAATATTCAGCTTTTGTGTCTGTTTTATCAACGTTCACATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| 3UTR CAA 72 bp | TTCACAGTTATTGGGACAACTAGCACAAGGTGTTCCTaGTTGATATGGGGTGCTCTTTTTCATCACATTGTT | + |
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Preference number: 4 (lower is better) Translates to: FTVIGTTSTRCS*LIWGALFHHIV Trigger: AACAATGTGATGAAAAAGAGCACCCCATATCAACAAGGAACACCTTGTGCTAGTTGTCCCAATAACTGTGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| CDS-3UTR TCA 90 bp | ATATTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACAGAGGGTAGGATCAGTTaGCATATAGAGATTCTCACC | + |
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Preference number: 4 (lower is better) Translates to: ILMYESRKERSLVIWDVTEGRIS*HIEILT Trigger: GGTGAGAATCTCTATATGTCAACTGATCCTACCCTC...TGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAATAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR GCA 90 bp | GAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACTAATCTCCTATAGATTGAGCATTTGTTGTTaGTTGTATGCTCCATTCCAT | + |
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Preference number: 4 (lower is better) Translates to: EGKKPCHLGCDMSLISYRLSICC*LYAPFH Trigger: ATGGAATGGAGCATACAAGCAACAACAAATGCTCAA...TCTATAGGAGATTAGTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR GCA 90 bp | ATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACCTTGTTGATATGGGGTaGTCTTTTTCATCACATTGT | + |
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Preference number: 4 (lower is better) Translates to: MYESRKERSLVIWDVTCHLVDMG*SFSSHC Trigger: ACAATGTGATGAAAAAGAGCACCCCATATCAACAAG...GTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| 3UTR CAA 72 bp | AAAGCTTTTATTGGGCTCAGGATATGCATGGAGTACTaGTGTATAAAACCAAGCTATCAGGATTACTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: KAFIGLRICMEY*CIKPSYQDYWS Trigger: TGACCAGTAATCCTGATAGCTTGGTTTTATACACAAGTACTCCATGCATATCCTGAGCCCAATAAAAGCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| CDS-3UTR TCA 90 bp | ATATTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATCATTGTACCAGCTTTaGATTACAGTTGACCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: ILMYESRKERSLVIWDVTSLYQL*ITVDQR Trigger: CCTCTGGTCAACTGTAATTCAAAGCTGGTACAATGA...TGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAATAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR GCA 90 bp | TTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTTTGAGCATTTGTTGTTaGTTGTATGCTCCATTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LMYESRKERSLVIWDVTCLSICC*LYAPFH Trigger: ATGGAATGGAGCATACAAGCAACAACAAATGCTCAA...ACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR GCA 90 bp | TTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCTTGTTGATATGGGGTaGTCTTTTTCATCACATTGT | + |
|
Preference number: 4 (lower is better) Translates to: LMYESRKERSLVIWDVTCLVDMG*SFSSHC Trigger: ACAATGTGATGAAAAAGAGCACCCCATATCAACAAG...ACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CCA 90 bp | ATATTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTTCCTTGTTGATATaGGGTGCTCTTTTTCATCAC | + |
|
Preference number: 4 (lower is better) Translates to: ILMYESRKERSLVIWDVTCSLLI*GALFHH Trigger: GTGATGAAAAAGAGCACCCCATATCAACAAGGAACA...TGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAATAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CAA 90 bp | TCCCCATCAGTCTCAACTAAGTCTGTACCCCTTCCTCATATAGTCTGTCCTGCTATATTTCAGGTTGTCTaGATTGGGACAGTAAGCAAT | + |
|
Preference number: 5 (lower is better) Translates to: SPSVSTKSVPLPHIVCPAIFQVV*IGTVSN Trigger: ATTGCTTACTGTCCCAATCAAGACAACCTGAAATAT...AGCAGGACAGACTATATGAGGAAGGGGTACAGACTTAGTTGAGACTGATGGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR CAA 90 bp | TTAAGTAAGAAGACAGAAGACACATGTAGATGTCAAGCTTCATCCTGGCAGGCGACAAGGTGTTCCTTGTaGATATGGGGTGCTCTTTTT | + |
|
Preference number: 5 (lower is better) Translates to: LSKKTEDTCRCQASSWQATRCSL*IWGALF Trigger: AAAAAGAGCACCCCATATCAACAAGGAACACCTTGT...CGCCTGCCAGGATGAAGCTTGACATCTACATGTGTCTTCTGTCTTCTTACTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CAA 90 bp | CATTTGGGATGTGACATGTCACTAATCTCCTATAGATTTTCCCCATCAGTCTCAAGCACAAGGTGTTCCTaGTTGATATGGGGTGCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: HLGCDMSLISYRFSPSVSSTRCS*LIWGAL Trigger: AAGAGCACCCCATATCAACAAGGAACACCTTGTGCT...TGAGACTGATGGGGAAAATCTATAGGAGATTAGTGACATGTCACATCCCAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CAA 90 bp | TTAAGTAAGAAGACAGAAGACACATGTAGATGTCAAGCTTCATCCTGGCAGGCGGATCTCCTCAGCTCATaGTGTTTATTTACGATCTCT | + |
|
Preference number: 5 (lower is better) Translates to: LSKKTEDTCRCQASSWQADLLSS*CLFTIS Trigger: AGAGATCGTAAATAAACACAATGAGCTGAGGAGATC...CGCCTGCCAGGATGAAGCTTGACATCTACATGTGTCTTCTGTCTTCTTACTTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR CAA 90 bp | TTCACAGTTATTGGGACAACTAGCACAAGGTGTTCCTTGTTGATATGGGGTGCTCTTATTAGCCCACTTTaGAGCATTTGTTGTTGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: FTVIGTTSTRCSLLIWGALISPL*SICCCL Trigger: CAAGCAACAACAAATGCTCAAAAGTGGGCTAATAAG...AGCACCCCATATCAACAAGGAACACCTTGTGCTAGTTGTCCCAATAACTGTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| CDS CCA 90 bp | TTCACAGTTATTGGGACAACTAGCACAAGGTGTTCCTTGTTGATATaGGGTGCTCTTTTTCATCACATTGTTACCCATAGGACAGTAATG | + |
|
Preference number: 5 (lower is better) Translates to: FTVIGTTSTRCSLLI*GALFHHIVTHRTVM Trigger: CATTACTGTCCTATGGGTAACAATGTGATGAAAAAGAGCACCCCATATCAACAAGGAACACCTTGTGCTAGTTGTCCCAATAACTGTGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CAA 90 bp | TTAAGTAAGAAGACAGAAGACACATGTAGATGTCAAGCTTCATCCTGGCAGGCGACTTTTGAGCATTTGTaGTTGCTTGTATGCTCCATT | + |
|
Preference number: 5 (lower is better) Translates to: LSKKTEDTCRCQASSWQATFEHL*LLVCSI Trigger: AATGGAGCATACAAGCAACAACAAATGCTCAAAAGT...CGCCTGCCAGGATGAAGCTTGACATCTACATGTGTCTTCTGTCTTCTTACTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR CAA 90 bp | GAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACTAATCTCCTATAGAACAAGGTGTTCCTTGTaGATATGGGGTGCTCTTTTT | + |
|
Preference number: 5 (lower is better) Translates to: EGKKPCHLGCDMSLISYRTRCSL*IWGALF Trigger: AAAAAGAGCACCCCATATCAACAAGGAACACCTTGT...TCTATAGGAGATTAGTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CAA 90 bp | TTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTAGCACAAGGTGTTCCTaGTTGATATGGGGTGCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: LMYESRKERSLVIWDVTCSTRCS*LIWGAL Trigger: AAGAGCACCCCATATCAACAAGGAACACCTTGTGCT...ACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CAA 90 bp | TTGGGATGTGACATGTCACTAATCTCCTATAGATTTTCCCCATCAGTCTCAACTCTTATTAGCCCACTTTaGAGCATTTGTTGTTGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LGCDMSLISYRFSPSVSTLISPL*SICCCL Trigger: CAAGCAACAACAAATGCTCAAAAGTGGGCTAATAAG...AGTTGAGACTGATGGGGAAAATCTATAGGAGATTAGTGACATGTCACATCCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR CAA 90 bp | ATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTCACCTTATTAGCCCACTTTaGAGCATTTGTTGTTGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: MYESRKERSLVIWDVTCHLISPL*SICCCL Trigger: CAAGCAACAACAAATGCTCAAAAGTGGGCTAATAAG...GTGACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR CAA 90 bp | ATATTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACAAGCACAAGGTGTTCCTaGTTGATATGGGGTGCTCTT | + |
|
Preference number: 5 (lower is better) Translates to: ILMYESRKERSLVIWDVTSTRCS*LIWGAL Trigger: AAGAGCACCCCATATCAACAAGGAACACCTTGTGCT...TGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 |
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| CDS-3UTR CAA 90 bp | TTGGGATGTGACATGTCACTAATCTCCTATAGATTTTCCCCATCAGTCTCAACTACTTTTGAGCATTTGTaGTTGCTTGTATGCTCCATT | + |
|
Preference number: 5 (lower is better) Translates to: LGCDMSLISYRFSPSVSTTFEHL*LLVCSI Trigger: AATGGAGCATACAAGCAACAACAAATGCTCAAAAGT...AGTTGAGACTGATGGGGAAAATCTATAGGAGATTAGTGACATGTCACATCCCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR CAA 90 bp | ACACTGGGCATGTTAATGAATTTTGTCTTCACACAAACAAGTAGCCTGGCACTTATATTTCAGGTTGTCTaGATTGGGACAGTAAGCAAT | + |
|
Preference number: 5 (lower is better) Translates to: TLGMLMNFVFTQTSSLALIFQVV*IGTVSN Trigger: ATTGCTTACTGTCCCAATCAAGACAACCTGAAATAT...AAGTGCCAGGCTACTTGTTTGTGTGAAGACAAAATTCATTAACATGCCCAGTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233679.2 |
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| CDS-3UTR CAA 90 bp | TATTATGAAATGAAAGCTTTTATTGGGCTCAGGATATGCATGGAGTACTTGTGTGATCTCCTCAGCTCATaGTGTTTATTTACGATCTCT | + |
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Preference number: 5 (lower is better) Translates to: YYEMKAFIGLRICMEYLCDLLSS*CLFTIS Trigger: AGAGATCGTAAATAAACACAATGAGCTGAGGAGATC...ACACAAGTACTCCATGCATATCCTGAGCCCAATAAAAGCTTTCATTTCATAATA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000232709.2 |
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| CDS-3UTR CAA 90 bp | ATATTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACAGATCTCCTCAGCTCATaGTGTTTATTTACGATCTCT | + |
|
Preference number: 5 (lower is better) Translates to: ILMYESRKERSLVIWDVTDLLSS*CLFTIS Trigger: AGAGATCGTAAATAAACACAATGAGCTGAGGAGATC...TGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAATAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR CAA 90 bp | ATATTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACACTTATTAGCCCACTTTaGAGCATTTGTTGTTGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: ILMYESRKERSLVIWDVTLISPL*SICCCL Trigger: CAAGCAACAACAAATGCTCAAAAGTGGGCTAATAAG...TGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAATAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS-3UTR CAA 90 bp | TTAATGTATGAATCTAGGAAGGAAAGAAGCCTTGTCATTTGGGATGTGACATGTATATTTCAGGTTGTCTaGATTGGGACAGTAAGCAAT | + |
|
Preference number: 5 (lower is better) Translates to: LMYESRKERSLVIWDVTCIFQVV*IGTVSN Trigger: ATTGCTTACTGTCCCAATCAAGACAACCTGAAATAT...ACATGTCACATCCCAAATGACAAGGCTTCTTTCCTTCCTAGATTCATACATTAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024724.14 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS TCA 90 bp | TTAACTGATCTCCTCAGCTCATTGTGTTTATTTACGATCTCTCTTTaGACTTGTAGTTGGTTAGTTAACAAAGAAGTAAAGTCTGGATCC | + |
|
Preference number: 5 (lower is better) Translates to: LTDLLSSLCLFTISL*TCSWLVNKEVKSGS Trigger: GGATCCAGACTTTACTTCTTTGTTAACTAACCAACTACAAGTTCAAAGAGAGATCGTAAATAAACACAATGAGCTGAGGAGATCAGTTAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000024724.14 ENSMUST00000131699.8 ENSMUST00000144243.8 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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| CDS TCA 72 bp | CTCCTCAGCTCATTGTGTTTATTTACGATCTCTCTTTaGACTTGTAGTTGGTTAGTTAACAAAGAAGTAAAG | + |
|
Preference number: 6 (lower is better) Translates to: LLSSLCLFTISL*TCSWLVNKEVK Trigger: CTTTACTTCTTTGTTAACTAACCAACTACAAGTTCAAAGAGAGATCGTAAATAAACACAATGAGCTGAGGAG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000024724.14 ENSMUST00000131699.8 ENSMUST00000144243.8 ENSMUST00000232709.2 ENSMUST00000233529.2 ENSMUST00000233679.2 |
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