Pregenerated sensors for CRISP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025431Ensembl transcript IDs: ENSMUST00000026498.5
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GACTCCGAAAATGTGTCACAGATTTCATATGTCAAGGTACAAAGGTATTATCAATCTATACTTTCTTGGTaGGATGTGATAAGCCTAACT | + |
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Preference number: 2 (lower is better) Translates to: DSENVSQISYVKVQRYYQSILSW*DVISLT Trigger: AGTTAGGCTTATCACATCCCACCAAGAAAGTATAGA...TTGATAATACCTTTGTACCTTGACATATGAAATCTGTGACACATTTTCGGAGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| 3UTR-3UTR CCA 90 bp | GACTCCGAAAATGTGTCACAGATTTCATATGTCAAGGTACAAAGGTATTATCAAAAATCTATACTTTCTTaGTGGGATGTGATAAGCCTA | + |
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Preference number: 2 (lower is better) Translates to: DSENVSQISYVKVQRYYQKSILS*WDVISL Trigger: TAGGCTTATCACATCCCACCAAGAAAGTATAGATTT...TTGATAATACCTTTGTACCTTGACATATGAAATCTGTGACACATTTTCGGAGTC 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| 3UTR CCA 72 bp | CTGGAATTATTTCAATGTCCTAAATCTATACTTTCTTaGTGGGATGTGATAAGCCTAACTAGAGAGTATGAG | + |
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Preference number: 3 (lower is better) Translates to: LELFQCPKSILS*WDVISLTREYE Trigger: CTCATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTTAGGACATTGAAATAATTCCAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR TCA 90 bp | TGTCCTAAATCTATACTTTCTTGGTGGGATGTGATAAGCCTAACTAGAGAGTATAGCCCATCTTCACAGTaGTCAGGACAACTGGCACAC | + |
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Preference number: 4 (lower is better) Translates to: CPKSILSWWDVISLTREYSPSSQ*SGQLAH Trigger: GTGTGCCAGTTGTCCTGATCACTGTGAAGATGGGCT...ATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTTAGGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR CCA 90 bp | AAATCTATACTTTCTTGGTGGGATGTGATAAGCCTAACTAGAGAGTATGAGCTTATCTTGAAGAAGGGATaGGGGCAGTACAGCAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: KSILSWWDVISLTREYELILKKG*GQYSSQ Trigger: TTGGCTGCTGTACTGCCCCCATCCCTTCTTCAAGAT...AAGCTCATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR GCA 90 bp | TGTCCTAAATCTATACTTTCTTGGTGGGATGTGATAAGCCTAACTAGAGAGTATGTCCACAACTATTGGTaGATAGCCCATCTTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: CPKSILSWWDVISLTREYVHNYW*IAHLHS Trigger: ACTGTGAAGATGGGCTATGCACCAATAGTTGTGGAC...ATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTTAGGACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR TCA 90 bp | AAATCTATACTTTCTTGGTGGGATGTGATAAGCCTAACTAGAGAGTATGAGCTTCAAGGTAAGATGACATaGACAAATTCTCCCCACATC | + |
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Preference number: 4 (lower is better) Translates to: KSILSWWDVISLTREYELQGKMT*TNSPHI Trigger: GATGTGGGGAGAATTTGTTCATGTCATCTTACCTTG...AAGCTCATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR GCA 90 bp | AAATCTATACTTTCTTGGTGGGATGTGATAAGCCTAACTAGAGAGTATGAGCTTACCACACTATCAGGTTaGTTTGGGCCAACATCATAT | + |
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Preference number: 4 (lower is better) Translates to: KSILSWWDVISLTREYELTTLSG*FGPTSY Trigger: ATATGATGTTGGCCCAAAGCAACCTGATAGTGTGGT...AAGCTCATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR TCA 90 bp | GACTCCGAAAATGTGTCACAGATTTCATATGTCAAGGTACAAAGGTATTATCAATGCAACTTGGAAAGTTaGGTTCCAAACAACCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: DSENVSQISYVKVQRYYQCNLES*VPNNLS Trigger: ACTCAGGTTGTTTGGAACTCAACTTTCCAAGTTGCA...TTGATAATACCTTTGTACCTTGACATATGAAATCTGTGACACATTTTCGGAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR GCA 90 bp | TTGACTCCGAAAATGTGTCACAGATTTCATATGTCAAGGTACAAAGGTATTATCGCCTTCCTTGATAATTaGCAACAGGACAATAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LTPKMCHRFHMSRYKGIIAFLDN*QQDNSD Trigger: GTCACTATTGTCCTGTTGGCAATTATCAAGGAAGGC...GATAATACCTTTGTACCTTGACATATGAAATCTGTGACACATTTTCGGAGTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR CCA 90 bp | TGTCCTAAATCTATACTTTCTTGGTGGGATGTGATAAGCCTAACTAGAGAGTATACTATCAGGTTGCTTTaGGCCAACATCATATGTAAG | + |
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Preference number: 4 (lower is better) Translates to: CPKSILSWWDVISLTREYTIRLL*ANIICK Trigger: CTTACATATGATGTTGGCCCAAAGCAACCTGATAGT...ATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTTAGGACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR TCA 90 bp | GACTCCGAAAATGTGTCACAGATTTCATATGTCAAGGTACAAAGGTATTATCAAAGTTCTATAGGACTGTaGCTGAATGTACACTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: DSENVSQISYVKVQRYYQSSIGL*LNVHLS Trigger: AGACAAGTGTACATTCAGTCACAGTCCTATAGAACT...TTGATAATACCTTTGTACCTTGACATATGAAATCTGTGACACATTTTCGGAGTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR CCA 90 bp | GACTCCGAAAATGTGTCACAGATTTCATATGTCAAGGTACAAAGGTATTATCAATCATTATACCATCCTTaGATTGCAGAAGACCATGAT | + |
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Preference number: 4 (lower is better) Translates to: DSENVSQISYVKVQRYYQSLYHP*IAEDHD Trigger: ATCATGGTCTTCTGCAATCCAAGGATGGTATAATGA...TTGATAATACCTTTGTACCTTGACATATGAAATCTGTGACACATTTTCGGAGTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR CCA 90 bp | TGTCCTAAATCTATACTTTCTTGGTGGGATGTGATAAGCCTAACTAGAGAGTATATAATAGTATCTCAGTaGATTTTTAGGGCATTCAGC | + |
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Preference number: 4 (lower is better) Translates to: CPKSILSWWDVISLTREYIIVSQ*IFRAFS Trigger: GCTGAATGCCCTAAAAATCCACTGAGATACTATTAT...ATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTTAGGACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| 3UTR CAA 72 bp | TTAGTCATACAGACAATGTATAATCATGGGCTAGACTaGACTCCGAAAATGTGTCACAGATTTCATATGTCA | + |
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Preference number: 4 (lower is better) Translates to: LVIQTMYNHGLD*TPKMCHRFHMS Trigger: TGACATATGAAATCTGTGACACATTTTCGGAGTCAAGTCTAGCCCATGATTATACATTGTCTGTATGACTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR CCA 90 bp | TTGACTCCGAAAATGTGTCACAGATTTCATATGTCAAGGTACAAAGGTATTATCCTTACAATCTCTTCTTaGACTGACATTTTAGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: LTPKMCHRFHMSRYKGIILTISS*TDILVV Trigger: AACCACTAAAATGTCAGTCCAAGAAGAGATTGTAAG...GATAATACCTTTGTACCTTGACATATGAAATCTGTGACACATTTTCGGAGTCAA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS TCA 90 bp | TGGATTTTTAGGGCATTCAGCAACTCCACATGCAACTTGGAAAGTTaGGTTCCAAACAACCTGAGTATAATGTCCAACCACACTATCAGG | + |
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Preference number: 5 (lower is better) Translates to: WIFRAFSNSTCNLES*VPNNLSIMSNHTIR Trigger: CCTGATAGTGTGGTTGGACATTATACTCAGGTTGTTTGGAACTCAACTTTCCAAGTTGCATGTGGAGTTGCTGAATGCCCTAAAAATCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR CAA 90 bp | TTGACTCCGAAAATGTGTCACAGATTTCATATGTCAAGGTACAAAGGTATTATCTTCCTGAGAGCTATCTaGAAGAAGGGATGGGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: LTPKMCHRFHMSRYKGIIFLRAI*KKGWGQ Trigger: CTGCCCCCATCCCTTCTTCAAGATAGCTCTCAGGAA...GATAATACCTTTGTACCTTGACATATGAAATCTGTGACACATTTTCGGAGTCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR CAA 90 bp | TGTCCTAAATCTATACTTTCTTGGTGGGATGTGATAAGCCTAACTAGAGAGTATACACTTGTCTGCCCATaGCTGAGCATTCACTTGAGC | + |
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Preference number: 5 (lower is better) Translates to: CPKSILSWWDVISLTREYTLVCP*LSIHLS Trigger: GCTCAAGTGAATGCTCAGCAATGGGCAGACAAGTGT...ATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTTAGGACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS GCA 90 bp | ACGGTTCTCCTGCAGTGTAAGGTGTGTATAGCCTTCCTTGATAATTaGCAACAGGACAATAGTGACAAACATAATAGTATCTCAGTGGAT | + |
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Preference number: 5 (lower is better) Translates to: TVLLQCKVCIAFLDN*QQDNSDKHNSISVD Trigger: ATCCACTGAGATACTATTATGTTTGTCACTATTGTCCTGTTGGCAATTATCAAGGAAGGCTATACACACCTTACACTGCAGGAGAACCGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CCA 90 bp | GAAACCATTCGTCTCAATTGGTTGTGCTTGCTTACAATCTCTTCTTaGACTGACATTTTAGTGGTTGAAAGTTTCTCAAGACGATTTTCC | + |
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Preference number: 5 (lower is better) Translates to: ETIRLNWLCLLTISS*TDILVVESFSRRFS Trigger: GGAAAATCGTCTTGAGAAACTTTCAACCACTAAAATGTCAGTCCAAGAAGAGATTGTAAGCAAGCACAACCAATTGAGACGAATGGTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CCA 90 bp | CCAAACAACCTGAGTATAATGTCCAACCACACTATCAGGTTGCTTTaGGCCAACATCATATGTAAGATCTTTGTATTCATTATACCATCC | + |
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Preference number: 5 (lower is better) Translates to: PNNLSIMSNHTIRLL*ANIICKIFVFIIPS Trigger: GGATGGTATAATGAATACAAAGATCTTACATATGATGTTGGCCCAAAGCAACCTGATAGTGTGGTTGGACATTATACTCAGGTTGTTTGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR CAA 90 bp | TGTCCTAAATCTATACTTTCTTGGTGGGATGTGATAAGCCTAACTAGAGAGTATTATACCATCCTTGGATaGCAGAAGACCATGATGCAA | + |
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Preference number: 5 (lower is better) Translates to: CPKSILSWWDVISLTREYYTILG*QKTMMQ Trigger: TTGCATCATGGTCTTCTGCAATCCAAGGATGGTATA...ATACTCTCTAGTTAGGCTTATCACATCCCACCAAGAAAGTATAGATTTAGGACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CCA 90 bp | ATAATTGCCAACAGGACAATAGTGACAAACATAATAGTATCTCAGTaGATTTTTAGGGCATTCAGCAACTCCACATGCAACTTGGAAAGT | + |
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Preference number: 5 (lower is better) Translates to: IIANRTIVTNIIVSQ*IFRAFSNSTCNLES Trigger: ACTTTCCAAGTTGCATGTGGAGTTGCTGAATGCCCTAAAAATCCACTGAGATACTATTATGTTTGTCACTATTGTCCTGTTGGCAATTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS-3UTR CAA 90 bp | TTGACTCCGAAAATGTGTCACAGATTTCATATGTCAAGGTACAAAGGTATTATCATGCAACTTGGAAAGTaGAGTTCCAAACAACCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LTPKMCHRFHMSRYKGIIMQLGK*SSKQPE Trigger: CTCAGGTTGTTTGGAACTCAACTTTCCAAGTTGCAT...GATAATACCTTTGTACCTTGACATATGAAATCTGTGACACATTTTCGGAGTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS TCA 72 bp | TGTCCACAACTATTGGTGCATAGCCCATCTTCACAGTaGTCAGGACAACTGGCACACGGTTCTCCTGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: CPQLLVHSPSSQ*SGQLAHGSPAV Trigger: CACTGCAGGAGAACCGTGTGCCAGTTGTCCTGATCACTGTGAAGATGGGCTATGCACCAATAGTTGTGGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CCA 72 bp | TGGTGCATAGCCCATCTTCACAGTGATCAGGACAACTaGCACACGGTTCTCCTGCAGTGTAAGGTGTGTATA | + |
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Preference number: 6 (lower is better) Translates to: WCIAHLHSDQDN*HTVLLQCKVCI Trigger: TATACACACCTTACACTGCAGGAGAACCGTGTGCCAGTTGTCCTGATCACTGTGAAGATGGGCTATGCACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CCA 72 bp | AAGACGATTTTCCTGAGAGCTATCTTGAAGAAGGGATaGGGGCAGTACAGCAGCCAAGAAGAACAGCACAAG | + |
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Preference number: 6 (lower is better) Translates to: KTIFLRAILKKG*GQYSSQEEQHK Trigger: CTTGTGCTGTTCTTCTTGGCTGCTGTACTGCCCCCATCCCTTCTTCAAGATAGCTCTCAGGAAAATCGTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS TCA 72 bp | AGGGCATTCAGCAACTCCACATGCAACTTGGAAAGTTaGGTTCCAAACAACCTGAGTATAATGTCCAACCAC | + |
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Preference number: 6 (lower is better) Translates to: RAFSNSTCNLES*VPNNLSIMSNH Trigger: GTGGTTGGACATTATACTCAGGTTGTTTGGAACTCAACTTTCCAAGTTGCATGTGGAGTTGCTGAATGCCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CAA 72 bp | TATAGGACTGTGACTGAATGTACACTTGTCTGCCCATaGCTGAGCATTCACTTGAGCATCATAGTTCCATTC | + |
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Preference number: 6 (lower is better) Translates to: YRTVTECTLVCP*LSIHLSIIVPF Trigger: GAATGGAACTATGATGCTCAAGTGAATGCTCAGCAATGGGCAGACAAGTGTACATTCAGTCACAGTCCTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CAA 72 bp | CCAGATGGAGAAACCATTCGTCTCAATTGGTTGTGCTaGCTTACAATCTCTTCTTGGACTGACATTTTAGTG | + |
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Preference number: 6 (lower is better) Translates to: PDGETIRLNWLC*LTISSWTDILV Trigger: CACTAAAATGTCAGTCCAAGAAGAGATTGTAAGCAAGCACAACCAATTGAGACGAATGGTTTCTCCATCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CAA 90 bp | ACCACACTATCAGGTTGCTTTGGGCCAACATCATATGTAAGATCTTaGTATTCATTATACCATCCTTGGATTGCAGAAGACCATGATGCA | + |
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Preference number: 6 (lower is better) Translates to: TTLSGCFGPTSYVRS*YSLYHPWIAEDHDA Trigger: TGCATCATGGTCTTCTGCAATCCAAGGATGGTATAATGAATACAAAGATCTTACATATGATGTTGGCCCAAAGCAACCTGATAGTGTGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CCA 72 bp | AACAGGACAATAGTGACAAACATAATAGTATCTCAGTaGATTTTTAGGGCATTCAGCAACTCCACATGCAAC | + |
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Preference number: 6 (lower is better) Translates to: NRTIVTNIIVSQ*IFRAFSNSTCN Trigger: GTTGCATGTGGAGTTGCTGAATGCCCTAAAAATCCACTGAGATACTATTATGTTTGTCACTATTGTCCTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CAA 72 bp | AACAACCTGAGTATAATGTCCAACCACACTATCAGGTaGCTTTGGGCCAACATCATATGTAAGATCTTTGTA | + |
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Preference number: 6 (lower is better) Translates to: NNLSIMSNHTIR*LWANIICKIFV Trigger: TACAAAGATCTTACATATGATGTTGGCCCAAAGCAACCTGATAGTGTGGTTGGACATTATACTCAGGTTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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| CDS CCA 72 bp | CTGAGTATAATGTCCAACCACACTATCAGGTTGCTTTaGGCCAACATCATATGTAAGATCTTTGTATTCATT | + |
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Preference number: 6 (lower is better) Translates to: LSIMSNHTIRLL*ANIICKIFVFI Trigger: AATGAATACAAAGATCTTACATATGATGTTGGCCCAAAGCAACCTGATAGTGTGGTTGGACATTATACTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026498.5 |
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