Pregenerated sensors for CRIPT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024146

Ensembl transcript IDs: ENSMUST00000024959.10

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	GAGTGGCAGCGGGGGTGGAGGGATGTTAAGGAAAGACTTGTTTCTTaGTTCAAAGAGCATTCCGAAACAGAAGAAACTTATCCTCATTTG	+
Preference number: 1 (lower is better) Translates to: EWQRGWRDVKERLVS*FKEHSETEETYPHL Trigger: CAAATGAGGATAAGTTTCTTCTGTTTCGGAATGCTCTTTGAAGCAAGAAACAAGTCTTTCCTTAACATCCCTCCACCCCCGCTGCCACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR CCA 90 bp	CTTCAGTGCCTGGACAGTTGGGCCCCATGGCTCTCAGTCACATGTTaGACTTTAGTGTTAACAGCAAATTTAAGTAAAATATGCAACTTG	+
Preference number: 1 (lower is better) Translates to: LQCLDSWAPWLSVTC*TLVLTANLSKICNL Trigger: CAAGTTGCATATTTTACTTAAATTTGCTGTTAACACTAAAGTCCAACATGTGACTGAGAGCCATGGGGCCCAACTGTCCAGGCACTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR CCA 90 bp	TCAGTACAATGCTCACAAGGAAAACAACCACTTAAGGCAGAAAACTaGGCGTATCATTGCTGTTCAGAACTTTGTGAGAGCAGACAAATC	+
Preference number: 1 (lower is better) Translates to: SVQCSQGKQPLKAEN*AYHCCSELCESRQI Trigger: GATTTGTCTGCTCTCACAAAGTTCTGAACAGCAATGATACGCCCAGTTTTCTGCCTTAAGTGGTTGTTTTCCTTGTGAGCATTGTACTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR TCA 90 bp	CACACAGGTTATTTTGTAAGATGGACGTCCATTCATGCTATGCCTTaGATAGTTGAAGCACAAAGTACAATCCTAGAGAGTCAGGATCTT	+
Preference number: 1 (lower is better) Translates to: HTGYFVRWTSIHAMP*IVEAQSTILESQDL Trigger: AAGATCCTGACTCTCTAGGATTGTACTTTGTGCTTCAACTATTCAAGGCATAGCATGAATGGACGTCCATCTTACAAAATAACCTGTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR GCA 90 bp	TCACAAGGAAAACAACCACTTAAGGCAGAAAACTGGGCGTATCATTaGTGTTCAGAACTTTGTGAGAGCAGACAAATCAATACTGATCAA	+
Preference number: 1 (lower is better) Translates to: SQGKQPLKAENWAYH*CSELCESRQINTDQ Trigger: TTGATCAGTATTGATTTGTCTGCTCTCACAAAGTTCTGAACAGCAATGATACGCCCAGTTTTCTGCCTTAAGTGGTTGTTTTCCTTGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR TCA 90 bp	TTATTTTGTAAGATGGACGTCCATTCATGCTATGCCTTGAATAGTTaGAGCACAAAGTACAATCCTAGAGAGTCAGGATCTTCATCAATA	+
Preference number: 1 (lower is better) Translates to: LFCKMDVHSCYALNS*STKYNPRESGSSSI Trigger: TATTGATGAAGATCCTGACTCTCTAGGATTGTACTTTGTGCTTCAACTATTCAAGGCATAGCATGAATGGACGTCCATCTTACAAAATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR GCA 90 bp	TGCATGGATCAGGTAAGAATCATATGGATAATGTTGAGTAGACAGTaGGTACAGAAGTCAGGAACACCTTATTCATTAATTTTGTCTCTT	+
Preference number: 1 (lower is better) Translates to: CMDQVRIIWIMLSRQ*VQKSGTPYSLILSL Trigger: AAGAGACAAAATTAATGAATAAGGTGTTCCTGACTTCTGTACGCACTGTCTACTCAACATTATCCATATGATTCTTACCTGATCCATGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR-3UTR GCA 90 bp	GAACTTCAGTGCCTGGACAGTTGGGCCCCATGGCTCTCAGTCACATGTTGGACTTCTAGTTCAGTACAATaGTCACAAGGAAAACAACCA	+
Preference number: 2 (lower is better) Translates to: ELQCLDSWAPWLSVTCWTSSSVQ*SQGKQP Trigger: TGGTTGTTTTCCTTGTGAGCATTGTACTGAACTAGA...AGTCCAACATGTGACTGAGAGCCATGGGGCCCAACTGTCCAGGCACTGAAGTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR-3UTR TCA 90 bp	ATGAAAATGCACTTAACTAAGGTGCTGCTCATTCTAAGAACTGTGACATTTGTGCTGTTCAGAACTTTGTaGGAGCAGACAAATCAATAC	+
Preference number: 2 (lower is better) Translates to: MKMHLTKVLLILRTVTFVLFRTL*EQTNQY Trigger: GTATTGATTTGTCTGCTCTCACAAAGTTCTGAACAG...CACAAATGTCACAGTTCTTAGAATGAGCAGCACCTTAGTTAAGTGCATTTTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR-3UTR CCA 90 bp	AACTTATCCTCATTTGAATTTAAGATAATGCTGACGGAATGCACATCTCTGAACGAGAAATCTGAGGTCTaGATGTCAAGTTCAGAGCAA	+
Preference number: 2 (lower is better) Translates to: NLSSFEFKIMLTECTSLNEKSEV*MSSSEQ Trigger: TTGCTCTGAACTTGACATCCAGACCTCAGATTTCTC...GTTCAGAGATGTGCATTCCGTCAGCATTATCTTAAATTCAAATGAGGATAAGTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR-3UTR CCA 90 bp	ATGAAAATGCACTTAACTAAGGTGCTGCTCATTCTAAGAACTGTGACATTTGTGCAGGTAAGAATCATATaGATAATGTTGAGTAGACAG	+
Preference number: 2 (lower is better) Translates to: MKMHLTKVLLILRTVTFVQVRII*IMLSRQ Trigger: CTGTCTACTCAACATTATCCATATGATTCTTACCTG...CACAAATGTCACAGTTCTTAGAATGAGCAGCACCTTAGTTAAGTGCATTTTCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR GCA 72 bp	GATAATGCTGACGGAATGCACATCTCTGAACTTCAGTaGCTGGACAGTTGGGCCCCATGGCTCTCAGTCACA	+
Preference number: 3 (lower is better) Translates to: DNADGMHISELQ*LDSWAPWLSVT Trigger: TGTGACTGAGAGCCATGGGGCCCAACTGTCCAGGCACTGAAGTTCAGAGATGTGCATTCCGTCAGCATTATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR CCA 72 bp	ATGCTGACGGAATGCACATCTCTGAACTTCAGTGCCTaGACAGTTGGGCCCCATGGCTCTCAGTCACATGTT	+
Preference number: 3 (lower is better) Translates to: MLTECTSLNFSA*TVGPHGSQSHV Trigger: AACATGTGACTGAGAGCCATGGGGCCCAACTGTCCAGGCACTGAAGTTCAGAGATGTGCATTCCGTCAGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR CCA 72 bp	GGAATGCACATCTCTGAACTTCAGTGCCTGGACAGTTaGGCCCCATGGCTCTCAGTCACATGTTGGACTTTA	+
Preference number: 3 (lower is better) Translates to: GMHISELQCLDS*APWLSVTCWTL Trigger: TAAAGTCCAACATGTGACTGAGAGCCATGGGGCCCAACTGTCCAGGCACTGAAGTTCAGAGATGTGCATTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR CCA 72 bp	GTGCTTGCTTTATTTCTGAGGGAGTGGCAGCGGGGGTaGAGGGATGTTAAGGAAAGACTTGTTTCTTGCTTC	+
Preference number: 3 (lower is better) Translates to: VLALFLREWQRG*RDVKERLVSCF Trigger: GAAGCAAGAAACAAGTCTTTCCTTAACATCCCTCCACCCCCGCTGCCACTCCCTCAGAAATAAAGCAAGCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR CCA 72 bp	ATCTCTGAACTTCAGTGCCTGGACAGTTGGGCCCCATaGCTCTCAGTCACATGTTGGACTTTAGTGTTAACA	+
Preference number: 3 (lower is better) Translates to: ISELQCLDSWAP*LSVTCWTLVLT Trigger: TGTTAACACTAAAGTCCAACATGTGACTGAGAGCCATGGGGCCCAACTGTCCAGGCACTGAAGTTCAGAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR GCA 72 bp	CGGGGGTGGAGGGATGTTAAGGAAAGACTTGTTTCTTaGTTCAAAGAGCATTCCGAAACAGAAGAAACTTAT	+
Preference number: 3 (lower is better) Translates to: RGWRDVKERLVS*FKEHSETEETY Trigger: ATAAGTTTCTTCTGTTTCGGAATGCTCTTTGAAGCAAGAAACAAGTCTTTCCTTAACATCCCTCCACCCCCG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR GCA 72 bp	TTATCCTCATTTGAATTTAAGATAATGCTGACGGAATaGACATCTCTGAACTTCAGTGCCTGGACAGTTGGG	+
Preference number: 3 (lower is better) Translates to: LSSFEFKIMLTE*TSLNFSAWTVG Trigger: CCCAACTGTCCAGGCACTGAAGTTCAGAGATGTGCATTCCGTCAGCATTATCTTAAATTCAAATGAGGATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR CCA 72 bp	CTGGACAGTTGGGCCCCATGGCTCTCAGTCACATGTTaGACTTTAGTGTTAACAGCAAATTTAAGTAAAATA	+
Preference number: 3 (lower is better) Translates to: LDSWAPWLSVTC*TLVLTANLSKI Trigger: TATTTTACTTAAATTTGCTGTTAACACTAAAGTCCAACATGTGACTGAGAGCCATGGGGCCCAACTGTCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR TCA 72 bp	TATTTTGTAAGATGGACGTCCATTCATGCTATGCCTTaGATAGTTGAAGCACAAAGTACAATCCTAGAGAGT	+
Preference number: 3 (lower is better) Translates to: YFVRWTSIHAMP*IVEAQSTILES Trigger: ACTCTCTAGGATTGTACTTTGTGCTTCAACTATTCAAGGCATAGCATGAATGGACGTCCATCTTACAAAATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
CDS-3UTR CCA 90 bp	TGCCTGGACAGTTGGGCCCCATGGCTCTCAGTCACATGTTGGACTTTAGTGTTATCCCACCACTCTCTGTaGTGTTCCGGGCACCATCTT	+
Preference number: 4 (lower is better) Translates to: CLDSWAPWLSVTCWTLVLSHHSL*CSGHHL Trigger: AAGATGGTGCCCGGAACACCACAGAGAGTGGTGGGA...TAACACTAAAGTCCAACATGTGACTGAGAGCCATGGGGCCCAACTGTCCAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
CDS-3UTR CCA 90 bp	TTATCTAGTTCAGTACAATGCTCACAAGGAAAACAACCACTTAAGGCAGAAAACATCTTTCCATGTGTCTaGAGTGATAACTCTGCCGAG	+
Preference number: 4 (lower is better) Translates to: LSSSVQCSQGKQPLKAENIFPCV*SDNSAE Trigger: CTCGGCAGAGTTATCACTCCAGACACATGGAAAGAT...GTTTTCTGCCTTAAGTGGTTGTTTTCCTTGTGAGCATTGTACTGAACTAGATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
3UTR CAA 72 bp	AAATGCATGGATCAGGTAAGAATCATATGGATAATGTaGAGTAGACAGTGCGTACAGAAGTCAGGAACACCT	+
Preference number: 4 (lower is better) Translates to: KCMDQVRIIWIM*SRQCVQKSGTP Trigger: AGGTGTTCCTGACTTCTGTACGCACTGTCTACTCAACATTATCCATATGATTCTTACCTGATCCATGCATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
CDS-3UTR GCA 90 bp	AACTTATCCTCATTTGAATTTAAGATAATGCTGACGGAATGCACATCTCTGAACTATCCAAAACCTTTTTaGCACACATCGCACAGATGC	+
Preference number: 4 (lower is better) Translates to: NLSSFEFKIMLTECTSLNYPKPF*HTSHRC Trigger: GCATCTGTGCGATGTGTGGCAAAAAGGTTTTGGATA...GTTCAGAGATGTGCATTCCGTCAGCATTATCTTAAATTCAAATGAGGATAAGTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
CDS-3UTR CAA 90 bp	CTGAACTTCAGTGCCTGGACAGTTGGGCCCCATGGCTCTCAGTCACATGTTGGAGTATCCAAAACCTTTTaGCCACACATCGCACAGATG	+
Preference number: 5 (lower is better) Translates to: LNFSAWTVGPHGSQSHVGVSKTF*PHIAQM Trigger: CATCTGTGCGATGTGTGGCAAAAAGGTTTTGGATAC...TCCAACATGTGACTGAGAGCCATGGGGCCCAACTGTCCAGGCACTGAAGTTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024959.10
CDS-3UTR CAA 90 bp	TTATTTCTGAGGGAGTGGCAGCGGGGGTGGAGGGATGTTAAGGAAAGACTTGTTTTTGTAGGCGCAGCCTaGACAGTAATGAGAACCTGG	+
Preference number: 5 (lower is better) Translates to: LFLREWQRGWRDVKERLVFVGAA*TVMRTW Trigger: CCAGGTTCTCATTACTGTCAAGGCTGCGCCTACAAA...AACAAGTCTTTCCTTAACATCCCTCCACCCCCGCTGCCACTCCCTCAGAAATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000024959.10