Pregenerated sensors for CRIP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023968Ensembl transcript IDs: ENSMUST00000024764.12, ENSMUST00000113465.10, ENSMUST00000165993.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGGAACGCAGTGACCTTGACGAATACACTTTGAAGCTCATGCAGTaGTGGAAGGAGGAACTGGGAACCCAGGCAACCACCATTCTAAGT | + |
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Preference number: 1 (lower is better) Translates to: RERSDLDEYTLKLMQ*WKEELGTQATTILS Trigger: ACTTAGAATGGTGGTTGCCTGGGTTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACTGCGTTCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| 3UTR-3UTR CCA 90 bp | GGGAAACAGAACTGGCAGAGACAGTCTGGACTCAGATCTACCACAGAGCCTAGGAATCACTCCTGCGAATaGCTCATTTGGATCTTATGT | + |
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Preference number: 2 (lower is better) Translates to: GKQNWQRQSGLRSTTEPRNHSCE*LIWILC Trigger: ACATAAGATCCAAATGAGCCATTCGCAGGAGTGATT...CCTAGGCTCTGTGGTAGATCTGAGTCCAGACTGTCTCTGCCAGTTCTGTTTCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113465.10 |
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| 3UTR-3UTR CCA 90 bp | ATCAGTCAACATTTTATTAGAGAAGTCAGGGAACGCAGTGACCTTGACGAATACCTAAGTGTGTGGGGGTaGCTGGGGTATCCAGATAGG | + |
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Preference number: 2 (lower is better) Translates to: ISQHFIREVRERSDLDEYLSVWG*LGYPDR Trigger: CCTATCTGGATACCCCAGCCACCCCCACACACTTAG...GTATTCGTCAAGGTCACTGCGTTCCCTGACTTCTCTAATAAAATGTTGACTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| 3UTR GCA 72 bp | AGTGACCTTGACGAATACACTTTGAAGCTCATGCAGTaGTGGAAGGAGGAACTGGGAACCCAGGCAACCACC | + |
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Preference number: 3 (lower is better) Translates to: SDLDEYTLKLMQ*WKEELGTQATT Trigger: GGTGGTTGCCTGGGTTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| 3UTR CCA 72 bp | GGCTGGGGTATCCAGATAGGAATGGGGAAACAGAACTaGCAGAGACAGTCTGGACTCAGATCTACCACAGAG | + |
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Preference number: 3 (lower is better) Translates to: GWGIQIGMGKQN*QRQSGLRSTTE Trigger: CTCTGTGGTAGATCTGAGTCCAGACTGTCTCTGCCAGTTCTGTTTCCCCATTCCTATCTGGATACCCCAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| 3UTR CCA 72 bp | GACCTTGACGAATACACTTTGAAGCTCATGCAGTGCTaGAAGGAGGAACTGGGAACCCAGGCAACCACCATT | + |
|
Preference number: 3 (lower is better) Translates to: DLDEYTLKLMQC*KEELGTQATTI Trigger: AATGGTGGTTGCCTGGGTTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| 3UTR TCA 72 bp | AAGTCAGGGAACGCAGTGACCTTGACGAATACACTTTaGAGCTCATGCAGTGCTGGAAGGAGGAACTGGGAA | + |
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Preference number: 3 (lower is better) Translates to: KSGNAVTLTNTL*SSCSAGRRNWE Trigger: TTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACTGCGTTCCCTGACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR TCA 90 bp | GAGGAACTGGGAACCCAGGCAACCACCATTCTAAGTGTGTGGGGGTGGCTGGGGCCATCATGCTCCGCATaGCTCCCAGCAGTCAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: EELGTQATTILSVWGWLGPSCSA*LPAVRV Trigger: GACCCTGACTGCTGGGAGTCATGCGGAGCATGATGG...CCCCAGCCACCCCCACACACTTAGAATGGTGGTTGCCTGGGTTCCCAGTTCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CCA 90 bp | GAGGAACTGGGAACCCAGGCAACCACCATTCTAAGTGTGTGGGGGTGGCTGGGGAGGCTTGTGGCAGTATaGTCTCCCGTTGTGCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: EELGTQATTILSVWGWLGRLVAV*SPVVLC Trigger: GCAGAGCACAACGGGAGACCATACTGCCACAAGCCT...CCCCAGCCACCCCCACACACTTAGAATGGTGGTTGCCTGGGTTCCCAGTTCCTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CCA 90 bp | GATCTACCACAGAGCCTAGGCCCAGGCCCCCAGGGTGTCACCTTCTTCCTCCCCCAGATTGCCCACCTTTaGGGCCAAACAGGTATCCAT | + |
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Preference number: 4 (lower is better) Translates to: DLPQSLGPGPQGVTFFLPQIAHL*GQTGIH Trigger: ATGGATACCTGTTTGGCCCCAAAGGTGGGCAATCTG...GGGGAGGAAGAAGGTGACACCCTGGGGGCCTGGGCCTAGGCTCTGTGGTAGATC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | AGGCCCCCAGGGTGTCACCTTCTTCCTCCCCAAAGGACTAGAGAATTCCAGAGACCGTTGTGCTCTGCATaGCCGCCAGGGGACAAGATG | + |
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Preference number: 4 (lower is better) Translates to: RPPGCHLLPPQRTREFQRPLCSA*PPGDKM Trigger: CATCTTGTCCCCTGGCGGGCATGCAGAGCACAACGG...TCTCTGGAATTCTCTAGTCCTTTGGGGAGGAAGAAGGTGACACCCTGGGGGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR TCA 90 bp | AGGCCCCCAGGGTGTCACCTTCTTCCTCCCCAAAGGACTAGAGAATTCCAGAGAGGGGACAAGATGCTGTaGCAGCGCTCACATTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: RPPGCHLLPPQRTREFQRGDKML*QRSHFR Trigger: CCTGAAATGTGAGCGCTGTCACAGCATCTTGTCCCC...TCTCTGGAATTCTCTAGTCCTTTGGGGAGGAAGAAGGTGACACCCTGGGGGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR TCA 90 bp | GAGGAACTGGGAACCCAGGCAACCACCATTCTAAGTGTGTGGGGGTGGCTGGGGGTGAAGTCTCACCAGTaGATGTCTTCAAGTAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: EELGTQATTILSVWGWLGVKSHQ*MSSSRE Trigger: CTCCCTACTTGAAGACATTCACTGGTGAGACTTCAC...CCCCAGCCACCCCCACACACTTAGAATGGTGGTTGCCTGGGTTCCCAGTTCCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | GAAGCTCATGCAGTGCTGGAAGGAGGAACTGGGAACCCAGGCAACCACCATTCTCGCCAGGGGACAAGATaGTGTGACAGCGCTCACATT | + |
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Preference number: 4 (lower is better) Translates to: EAHAVLEGGTGNPGNHHSRQGTR*CDSAHI Trigger: AATGTGAGCGCTGTCACAGCATCTTGTCCCCTGGCG...AGAATGGTGGTTGCCTGGGTTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | AGGCCCCCAGGGTGTCACCTTCTTCCTCCCCAAAGGACTAGAGAATTCCAGAGACTCAGGCAGGGTCGGTaGCAATTTCTGCCCAAAGAC | + |
|
Preference number: 4 (lower is better) Translates to: RPPGCHLLPPQRTREFQRLRQGR*QFLPKD Trigger: GTCTTTGGGCAGAAATTGGCACCGACCCTGCCTGAG...TCTCTGGAATTCTCTAGTCCTTTGGGGAGGAAGAAGGTGACACCCTGGGGGCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CCA 90 bp | AGATCTACCACAGAGCCTAGGCCCAGGCCCCCAGGGTGTCACCTTCTTCCTCCCCAATGTTCACACCTTTaGGGCCAAACAGGTATCCAT | + |
|
Preference number: 4 (lower is better) Translates to: RSTTEPRPRPPGCHLLPPQCSHL*GQTGIH Trigger: ATGGATACCTGTTTGGCCCCAAAGGTGTGAACATTG...GGGAGGAAGAAGGTGACACCCTGGGGGCCTGGGCCTAGGCTCTGTGGTAGATCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024764.12 |
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| CDS-3UTR TCA 90 bp | ACCCAGGCAACCACCATTCTAAGTGTGTGGGGGTGGCTGGGGTATCCAGATAGGACATCCAGGGCACAGTaGAGTCTCACCAGTGAATGT | + |
|
Preference number: 4 (lower is better) Translates to: TQATTILSVWGWLGYPDRTSRAQ*SLTSEC Trigger: ACATTCACTGGTGAGACTTCACTGTGCCCTGGATGT...CCTATCTGGATACCCCAGCCACCCCCACACACTTAGAATGGTGGTTGCCTGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR TCA 90 bp | CCAGGGTGTCACCTTCTTCCTCCCCAAAGGACTAGAGAATTCCAGAGATTCCAACCATCATGCTCCGCATaGCTCCCAGCAGTCAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: PGCHLLPPQRTREFQRFQPSCSA*LPAVRV Trigger: GACCCTGACTGCTGGGAGTCATGCGGAGCATGATGG...TTGGAATCTCTGGAATTCTCTAGTCCTTTGGGGAGGAAGAAGGTGACACCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | AAGCTCATGCAGTGCTGGAAGGAGGAACTGGGAACCCAGGCAACCACCATTCTACGCCAGGGGACAAGATaGTGTGACAGCGCTCACATT | + |
|
Preference number: 4 (lower is better) Translates to: KLMQCWKEELGTQATTILRQGTR*CDSAHI Trigger: AATGTGAGCGCTGTCACAGCATCTTGTCCCCTGGCG...TAGAATGGTGGTTGCCTGGGTTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CCA 90 bp | TTTGAAGCTCATGCAGTGCTGGAAGGAGGAACTGGGAACCCAGGCAACCACCATGGCAGGAGGGGGAGTTaGGAGGTTGTAGAGATAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FEAHAVLEGGTGNPGNHHGRRGS*EVVEIA Trigger: TGCTATCTCTACAACCTCCCAACTCCCCCTCCTGCC...ATGGTGGTTGCCTGGGTTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | GAAGCTCATGCAGTGCTGGAAGGAGGAACTGGGAACCCAGGCAACCACCATTCTTTCAGGCAGAAACGGTaGCAGTTCTTGCCTAAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: EAHAVLEGGTGNPGNHHSFRQKR*QFLPKE Trigger: CTCCTTAGGCAAGAACTGGCACCGTTTCTGCCTGAA...AGAATGGTGGTTGCCTGGGTTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | AAACAGAACTGGCAGAGACAGTCTGGACTCAGATCTACCACAGAGCCTAGGCCCTTCAGGCAGAAACGGTaGCAGTTCTTGCCTAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: KQNWQRQSGLRSTTEPRPFRQKR*QFLPKE Trigger: CTCCTTAGGCAAGAACTGGCACCGTTTCTGCCTGAA...GGGCCTAGGCTCTGTGGTAGATCTGAGTCCAGACTGTCTCTGCCAGTTCTGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | ACCCAGGCAACCACCATTCTAAGTGTGTGGGGGTGGCTGGGGTATCCAGATAGGGTCGGTGCCAATTTCTaGCCAAAGACATCACTTTCT | + |
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Preference number: 4 (lower is better) Translates to: TQATTILSVWGWLGYPDRVGANF*PKTSLS Trigger: AGAAAGTGATGTCTTTGGGCAGAAATTGGCACCGAC...CCTATCTGGATACCCCAGCCACCCCCACACACTTAGAATGGTGGTTGCCTGGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CCA 90 bp | AGGCCCCCAGGGTGTCACCTTCTTCCTCCCCAAAGGACTAGAGAATTCCAGAGAGGATCTTATGTCCACTaGGTCATAGATGTAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: RPPGCHLLPPQRTREFQRGSYVH*VIDVAA Trigger: GGCTGCTACATCTATGACCCAGTGGACATAAGATCC...TCTCTGGAATTCTCTAGTCCTTTGGGGAGGAAGAAGGTGACACCCTGGGGGCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024764.12 |
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| CDS-3UTR GCA 90 bp | GAAGTCAGGGAACGCAGTGACCTTGACGAATACACTTTGAAGCTCATGCAGTGCTGTGGCAGTAAGGCATaGCATCATGCTCCGCATGAC | + |
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Preference number: 4 (lower is better) Translates to: EVRERSDLDEYTLKLMQCCGSKA*HHAPHD Trigger: GTCATGCGGAGCATGATGGCATGCCTTACTGCCACA...GCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACTGCGTTCCCTGACTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | AGTGACCTTGACGAATACACTTTGAAGCTCATGCAGTGCTGGAAGGAGGAACTGTGTCTGGGGTCAGATTaGCCACCTTTGGGGCCAAAC | + |
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Preference number: 4 (lower is better) Translates to: SDLDEYTLKLMQCWKEELCLGSD*PPLGPN Trigger: GTTTGGCCCCAAAGGTGGGCAATCTGACCCCAGACA...CAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113465.10 |
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| CDS-3UTR CCA 90 bp | AGTGACCTTGACGAATACACTTTGAAGCTCATGCAGTGCTGGAAGGAGGAACTGAGGCTTGTGGCAGTATaGTCTCCCGTTGTGCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SDLDEYTLKLMQCWKEELRLVAV*SPVVLC Trigger: GCAGAGCACAACGGGAGACCATACTGCCACAAGCCT...CAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CCA 90 bp | AGTGACCTTGACGAATACACTTTGAAGCTCATGCAGTGCTGGAAGGAGGAACTGGGCAGGAGGGGGAGTTaGGAGGTTGTAGAGATAGCA | + |
|
Preference number: 4 (lower is better) Translates to: SDLDEYTLKLMQCWKEELGRRGS*EVVEIA Trigger: TGCTATCTCTACAACCTCCCAACTCCCCCTCCTGCC...CAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| 3UTR CAA 72 bp | GAAGTCAGGGAACGCAGTGACCTTGACGAATACACTTaGAAGCTCATGCAGTGCTGGAAGGAGGAACTGGGA | + |
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Preference number: 4 (lower is better) Translates to: EVRERSDLDEYT*KLMQCWKEELG Trigger: TCCCAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACTGCGTTCCCTGACTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | GGGAAACAGAACTGGCAGAGACAGTCTGGACTCAGATCTACCACAGAGCCTAGGGTCGGTGCCAATTTCTaGCCAAAGACATCACTTTCT | + |
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Preference number: 4 (lower is better) Translates to: GKQNWQRQSGLRSTTEPRVGANF*PKTSLS Trigger: AGAAAGTGATGTCTTTGGGCAGAAATTGGCACCGAC...CCTAGGCTCTGTGGTAGATCTGAGTCCAGACTGTCTCTGCCAGTTCTGTTTCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | AGTGACCTTGACGAATACACTTTGAAGCTCATGCAGTGCTGGAAGGAGGAACTGTGTGGCAGTAAGGCATaGCATCATGCTCCGCATGAC | + |
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Preference number: 4 (lower is better) Translates to: SDLDEYTLKLMQCWKEELCGSKA*HHAPHD Trigger: GTCATGCGGAGCATGATGGCATGCCTTACTGCCACA...CAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR TCA 90 bp | GGTATGGGAATCAGTCAACATTTTATTAGAGAAGTCAGGGAACGCAGTGACCTTGGGGACAAGATGCTGTaGCAGCGCTCACATTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: GMGISQHFIREVRERSDLGDKML*QRSHFR Trigger: CCTGAAATGTGAGCGCTGTCACAGCATCTTGTCCCC...AAGGTCACTGCGTTCCCTGACTTCTCTAATAAAATGTTGACTGATTCCCATACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113465.10 |
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| CDS-3UTR TCA 90 bp | AGTGACCTTGACGAATACACTTTGAAGCTCATGCAGTGCTGGAAGGAGGAACTGGTGAAGTCTCACCAGTaGATGTCTTCAAGTAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: SDLDEYTLKLMQCWKEELVKSHQ*MSSSRE Trigger: CTCCCTACTTGAAGACATTCACTGGTGAGACTTCAC...CAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR GCA 90 bp | ATCAGTCAACATTTTATTAGAGAAGTCAGGGAACGCAGTGACCTTGACGAATACCTCAGGCAGGGTCGGTaGCAATTTCTGCCCAAAGAC | + |
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Preference number: 4 (lower is better) Translates to: ISQHFIREVRERSDLDEYLRQGR*QFLPKD Trigger: GTCTTTGGGCAGAAATTGGCACCGACCCTGCCTGAG...GTATTCGTCAAGGTCACTGCGTTCCCTGACTTCTCTAATAAAATGTTGACTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS TCA 90 bp | GGTCTCCCGTTGTGCTCTGCATGCCCGCCAGGGGACAAGATGCTGTaGCAGCGCTCACATTTCAGGCAGAAACGGTGCCAGTTCTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: GLPLCSACPPGDKML*QRSHFRQKRCQFLP Trigger: AGGCAAGAACTGGCACCGTTTCTGCCTGAAATGTGAGCGCTGTCACAGCATCTTGTCCCCTGGCGGGCATGCAGAGCACAACGGGAGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 ENSMUST00000165993.2 |
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| CDS-3UTR CAA 90 bp | ACCCAGGCAACCACCATTCTAAGTGTGTGGGGGTGGCTGGGGTATCCAGATAGGGTGTCTGGGGTCAGATaGCCCACCTTTGGGGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: TQATTILSVWGWLGYPDRVSGVR*PTFGAK Trigger: TTTGGCCCCAAAGGTGGGCAATCTGACCCCAGACAC...CCTATCTGGATACCCCAGCCACCCCCACACACTTAGAATGGTGGTTGCCTGGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000113465.10 |
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| CDS GCA 90 bp | AGTATGGTCTCCCGTTGTGCTCTGCATGCCCGCCAGGGGACAAGATaGTGTGACAGCGCTCACATTTCAGGCAGAAACGGTGCCAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: SMVSRCALHARQGTR*CDSAHISGRNGASS Trigger: AGAACTGGCACCGTTTCTGCCTGAAATGTGAGCGCTGTCACAGCATCTTGTCCCCTGGCGGGCATGCAGAGCACAACGGGAGACCATACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 ENSMUST00000165993.2 |
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| CDS CCA 90 bp | CTGAAGGAGAGAGCCCTGTCACCAAGGGCTTTGTTGGCAAGGGAGTaGAGGTCTGAAGGGATAGGGGAGGGGTCTAGATGTCTGACCACA | + |
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Preference number: 5 (lower is better) Translates to: LKERALSPRALLARE*RSEGIGEGSRCLTT Trigger: TGTGGTCAGACATCTAGACCCCTCCCCTATCCCTTCAGACCTCCACTCCCTTGCCAACAAAGCCCTTGGTGACAGGGCTCTCTCCTTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165993.2 |
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| CDS-3UTR CAA 90 bp | ACCCAGGCAACCACCATTCTAAGTGTGTGGGGGTGGCTGGGGTATCCAGATAGGAAACGGTGCCAGTTCTaGCCTAAGGAGCTCACCTTC | + |
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Preference number: 5 (lower is better) Translates to: TQATTILSVWGWLGYPDRKRCQF*PKELTF Trigger: GAAGGTGAGCTCCTTAGGCAAGAACTGGCACCGTTT...CCTATCTGGATACCCCAGCCACCCCCACACACTTAGAATGGTGGTTGCCTGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CAA 90 bp | ACCCAGGCAACCACCATTCTAAGTGTGTGGGGGTGGCTGGGGTATCCAGATAGGCCAATGTTCACACCTTaGGGGCCAAACAGGTATCCA | + |
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Preference number: 5 (lower is better) Translates to: TQATTILSVWGWLGYPDRPMFTP*GPNRYP Trigger: TGGATACCTGTTTGGCCCCAAAGGTGTGAACATTGG...CCTATCTGGATACCCCAGCCACCCCCACACACTTAGAATGGTGGTTGCCTGGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024764.12 |
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| CDS CCA 90 bp | ACACCACAAGGGAGGTTGTCCACACATTCTCATAGGTCCAGTGTCTaGGGTCAGATTGCCCACCTTTGGGGCCAAACAGGTATCCATAGC | + |
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Preference number: 5 (lower is better) Translates to: TPQGRLSTHSHRSSV*GQIAHLWGQTGIHS Trigger: GCTATGGATACCTGTTTGGCCCCAAAGGTGGGCAATCTGACCCCAGACACTGGACCTATGAGAATGTGTGGACAACCTCCCTTGTGGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113465.10 |
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| CDS-3UTR CAA 90 bp | AAGCTCATGCAGTGCTGGAAGGAGGAACTGGGAACCCAGGCAACCACCATTCTAAAACGGTGCCAGTTCTaGCCTAAGGAGCTCACCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KLMQCWKEELGTQATTILKRCQF*PKELTF Trigger: GAAGGTGAGCTCCTTAGGCAAGAACTGGCACCGTTT...TAGAATGGTGGTTGCCTGGGTTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CAA 90 bp | AAGCTCATGCAGTGCTGGAAGGAGGAACTGGGAACCCAGGCAACCACCATTCTAAGCAAAGTAAACGGGTaGCTGACAACGCGGACAAGT | + |
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Preference number: 5 (lower is better) Translates to: KLMQCWKEELGTQATTILSKVNG*LTTRTS Trigger: ACTTGTCCGCGTTGTCAGCAACCCGTTTACTTTGCT...TAGAATGGTGGTTGCCTGGGTTCCCAGTTCCTCCTTCCAGCACTGCATGAGCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CAA 90 bp | GGTGTCACCTTCTTCCTCCCCAAAGGACTAGAGAATTCCAGAGATTCCAAAAGATGGCAGGAGGGGGAGTaGGGAGGTTGTAGAGATAGC | + |
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Preference number: 5 (lower is better) Translates to: GVTFFLPKGLENSRDSKRWQEGE*GGCRDS Trigger: GCTATCTCTACAACCTCCCAACTCCCCCTCCTGCCA...TCTTTTGGAATCTCTGGAATTCTCTAGTCCTTTGGGGAGGAAGAAGGTGACACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CAA 90 bp | CCAGGGTGTCACCTTCTTCCTCCCCAAAGGACTAGAGAATTCCAGAGATTCCAAAGCAAAGTAAACGGGTaGCTGACAACGCGGACAAGT | + |
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Preference number: 5 (lower is better) Translates to: PGCHLLPPQRTREFQRFQSKVNG*LTTRTS Trigger: ACTTGTCCGCGTTGTCAGCAACCCGTTTACTTTGCT...TTGGAATCTCTGGAATTCTCTAGTCCTTTGGGGAGGAAGAAGGTGACACCCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 |
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| CDS-3UTR CAA 90 bp | AGTGACCTTGACGAATACACTTTGAAGCTCATGCAGTGCTGGAAGGAGGAACTGTCAGATTGCCCACCTTaGGGGCCAAACAGGTATCCA | + |
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Preference number: 5 (lower is better) Translates to: SDLDEYTLKLMQCWKEELSDCPP*GPNRYP Trigger: TGGATACCTGTTTGGCCCCAAAGGTGGGCAATCTGA...CAGTTCCTCCTTCCAGCACTGCATGAGCTTCAAAGTGTATTCGTCAAGGTCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113465.10 |
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| CDS CAA 90 bp | CGCCAATGTTCACACCTGAAGGAGAGAGCCCTGTCACCAAGGGCTTaGTTGGCAAGGGAGTGGAGGTCTGAAGGGATAGGGGAGGGGTCT | + |
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Preference number: 6 (lower is better) Translates to: RQCSHLKERALSPRA*LAREWRSEGIGEGS Trigger: AGACCCCTCCCCTATCCCTTCAGACCTCCACTCCCTTGCCAACAAAGCCCTTGGTGACAGGGCTCTCTCCTTCAGGTGTGAACATTGGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165993.2 |
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| CDS TCA 72 bp | TTGTGCTCTGCATGCCCGCCAGGGGACAAGATGCTGTaGCAGCGCTCACATTTCAGGCAGAAACGGTGCCAG | + |
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Preference number: 6 (lower is better) Translates to: LCSACPPGDKML*QRSHFRQKRCQ Trigger: CTGGCACCGTTTCTGCCTGAAATGTGAGCGCTGTCACAGCATCTTGTCCCCTGGCGGGCATGCAGAGCACAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 ENSMUST00000165993.2 |
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| CDS GCA 72 bp | TCCCGTTGTGCTCTGCATGCCCGCCAGGGGACAAGATaGTGTGACAGCGCTCACATTTCAGGCAGAAACGGT | + |
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Preference number: 6 (lower is better) Translates to: SRCALHARQGTR*CDSAHISGRNG Trigger: ACCGTTTCTGCCTGAAATGTGAGCGCTGTCACAGCATCTTGTCCCCTGGCGGGCATGCAGAGCACAACGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 ENSMUST00000165993.2 |
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| CDS CCA 72 bp | CATAGGTCCAGTGTCTGGGGTCAGATTGCCCACCTTTaGGGCCAAACAGGTATCCATAGCAGGGGATGTGGC | + |
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Preference number: 6 (lower is better) Translates to: HRSSVWGQIAHL*GQTGIHSRGCG Trigger: GCCACATCCCCTGCTATGGATACCTGTTTGGCCCCAAAGGTGGGCAATCTGACCCCAGACACTGGACCTATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000113465.10 ENSMUST00000165993.2 |
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| CDS CAA 72 bp | TCACACCTGAAGGAGAGAGCCCTGTCACCAAGGGCTTaGTTGGCAAGGGAGTGGAGGTCTGAAGGGATAGGG | + |
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Preference number: 6 (lower is better) Translates to: SHLKERALSPRA*LAREWRSEGIG Trigger: CCCTATCCCTTCAGACCTCCACTCCCTTGCCAACAAAGCCCTTGGTGACAGGGCTCTCTCCTTCAGGTGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165993.2 |
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| CDS CCA 72 bp | GGGAGGTTGTCCACACATTCTCATAGGTCCAGTGTCTaGGGTCAGATTGCCCACCTTTGGGGCCAAACAGGT | + |
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Preference number: 6 (lower is better) Translates to: GRLSTHSHRSSV*GQIAHLWGQTG Trigger: ACCTGTTTGGCCCCAAAGGTGGGCAATCTGACCCCAGACACTGGACCTATGAGAATGTGTGGACAACCTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113465.10 ENSMUST00000165993.2 |
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| CDS TCA 72 bp | GATCCCCACATCCAGGGCACAGTGAAGTCTCACCAGTaGATGTCTTCAAGTAGGGAGGCCTTTTCTTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: DPHIQGTVKSHQ*MSSSREAFSWP Trigger: GGGCCAAGAAAAGGCCTCCCTACTTGAAGACATTCACTGGTGAGACTTCACTGTGCCCTGGATGTGGGGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024764.12 ENSMUST00000113465.10 ENSMUST00000165993.2 |
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