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Pregenerated sensors for CRH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049796

Ensembl transcript IDs: ENSMUST00000061294.5

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp AGAGCTTACACATTTCGTCCTAGCCACCCCTCAAGAATGAATTCTCTTCCACTGTACTTGTGTGCTAAATaGAGAATCGTTTTGGCCAAG +
Preference number: 2 (lower is better)
Translates to: RAYTFRPSHPSRMNSLPLYLCAK*RIVLAK
Trigger: CTTGGCCAAAACGATTCTGCATTTAGCACACAAGTA...CAGTGGAAGAGAATTCATTCTTGAGGGGTGGCTAGGACGAAATGTGTAAGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
3UTR-3UTR GCA 90 bp GAATTCTCTTCCACTGCAGCTCCAAATAAAAACAACTGGATGACTCCCATCTGCCAGAAATACACTTTGTaGATGCTAATTAAGGGGTAT +
Preference number: 2 (lower is better)
Translates to: EFSSTAAPNKNNWMTPICQKYTL*MLIKGY
Trigger: ATACCCCTTAATTAGCATGCACAAAGTGTATTTCTG...GCAGATGGGAGTCATCCAGTTGTTTTTATTTGGAGCTGCAGTGGAAGAGAATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
3UTR-3UTR CCA 90 bp TGGGCAATACAAATAACGCTGTTTTGTTACGACACAGAAATACACTTTGTGCATATCGGAGCTGCGATATaGTACAGAATACTGTGTTTT +
Preference number: 2 (lower is better)
Translates to: WAIQITLFCYDTEIHFVHIGAAI*YRILCF
Trigger: AAAACACAGTATTCTGTACCATATCGCAGCTCCGAT...ATGCACAAAGTGTATTTCTGTGTCGTAACAAAACAGCGTTATTTGTATTGCCCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS-3UTR GCA 90 bp AGAGCTTACACATTTCGTCCTAGCCACCCCTCAAGAATGAATTCTCTTCCACTGGAGCCACCAGCAGCATaGCCGCGGACACCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: RAYTFRPSHPSRMNSLPLEPPAA*PRTPAA
Trigger: GGCTGCTGGTGTCCGCGGGCATGCTGCTGGTGGCTC...CAGTGGAAGAGAATTCATTCTTGAGGGGTGGCTAGGACGAAATGTGTAAGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS-3UTR TCA 90 bp GAATTCTCTTCCACTGCAGCTCCAAATAAAAACAACTGGATGACTCCCATCTGCCTGTCGAGCGAGCGCTaGGGCATCTGCAGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: EFSSTAAPNKNNWMTPICLSSER*GICSCC
Trigger: GCAGCAGCTGCAGATGCCTCAGCGCTCGCTCGACAG...GCAGATGGGAGTCATCCAGTTGTTTTTATTTGGAGCTGCAGTGGAAGAGAATTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS-3UTR TCA 90 bp GAATTCTCTTCCACTGCAGCTCCAAATAAAAACAACTGGATGACTCCCATCTGCCAGCGGGACTTCTGTTaGGATTCCCCAGGCGGAGGA +
Preference number: 4 (lower is better)
Translates to: EFSSTAAPNKNNWMTPICQRDFC*DSPGGG
Trigger: TCCTCCGCCTGGGGAATCTCAACAGAAGTCCCGCTG...GCAGATGGGAGTCATCCAGTTGTTTTTATTTGGAGCTGCAGTGGAAGAGAATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS-3UTR CCA 90 bp GCAATACAAATAACGCTGTTTTGTTACGACACAGAAATACACTTTGTGCATGCTTCCAGCGCCCCCTGGTaGCCACCGAGGGCATCCTCG +
Preference number: 4 (lower is better)
Translates to: AIQITLFCYDTEIHFVHASSAPW*PPRASS
Trigger: CGAGGATGCCCTCGGTGGCCACCAGGGGGCGCTGGA...AGCATGCACAAAGTGTATTTCTGTGTCGTAACAAAACAGCGTTATTTGTATTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS-3UTR CCA 90 bp GCAATACAAATAACGCTGTTTTGTTACGACACAGAAATACACTTTGTGCATGCTCTCTCCAGCGCCCCCTaGTGGCCACCGAGGGCATCC +
Preference number: 4 (lower is better)
Translates to: AIQITLFCYDTEIHFVHALSSAP*WPPRAS
Trigger: GGATGCCCTCGGTGGCCACCAGGGGGCGCTGGAGAG...AGCATGCACAAAGTGTATTTCTGTGTCGTAACAAAACAGCGTTATTTGTATTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS-3UTR TCA 90 bp GCAATACAAATAACGCTGTTTTGTTACGACACAGAAATACACTTTGTGCATGCTGGACGGATCCCCTGCTaGGCAGGGCCCTGCAAGGCA +
Preference number: 4 (lower is better)
Translates to: AIQITLFCYDTEIHFVHAGRIPC*AGPCKA
Trigger: TGCCTTGCAGGGCCCTGCTCAGCAGGGGATCCGTCC...AGCATGCACAAAGTGTATTTCTGTGTCGTAACAAAACAGCGTTATTTGTATTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS-3UTR GCA 90 bp CTCAAGAATGAATTCTCTTCCACTGCAGCTCCAAATAAAAACAACTGGATGACTTGGGGCTGCTCCGGCTaGAAGAAATTCAAGGGCTGC +
Preference number: 4 (lower is better)
Translates to: LKNEFSSTAAPNKNNWMTWGCSG*KKFKGC
Trigger: GCAGCCCTTGAATTTCTTGCAGCCGGAGCAGCCCCA...AGTCATCCAGTTGTTTTTATTTGGAGCTGCAGTGGAAGAGAATTCATTCTTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS-3UTR GCA 90 bp AGAGCTTACACATTTCGTCCTAGCCACCCCTCAAGAATGAATTCTCTTCCACTGCCATCAGTTTCCTGTTaGTGTGAGCTTGCTGAGCTA +
Preference number: 4 (lower is better)
Translates to: RAYTFRPSHPSRMNSLPLPSVSC*CELAEL
Trigger: TAGCTCAGCAAGCTCACAGCAACAGGAAACTGATGG...CAGTGGAAGAGAATTCATTCTTGAGGGGTGGCTAGGACGAAATGTGTAAGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS-3UTR CCA 90 bp GGTTTCCTCCTTGGGGCCACATTTTCTTTAAGATATCGCTATAAAGACGCTTATACTTCCCGCAGAAGGTaGAAGGTGAGATCCAGAGAG +
Preference number: 4 (lower is better)
Translates to: GFLLGATFSLRYRYKDAYTSRRR*KVRSRE
Trigger: CTCTCTGGATCTCACCTTCCACCTTCTGCGGGAAGT...ATAAGCGTCTTTATAGCGATATCTTAAAGAAAATGTGGCCCCAAGGAGGAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS CCA 90 bp ATGGGCGGCTCCTCCGACCGCCTCTCCCTCTCCAGCGCCCCCTGGTaGCCACCGAGGGCATCCTCGGCGCCGCGTTCGGCCGGCTCCGCG +
Preference number: 5 (lower is better)
Translates to: MGGSSDRLSLSSAPW*PPRASSAPRSAGSA
Trigger: CGCGGAGCCGGCCGAACGCGGCGCCGAGGATGCCCTCGGTGGCCACCAGGGGGCGCTGGAGAGGGAGAGGCGGTCGGAGGAGCCGCCCAT
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS CCA 90 bp GAGATGGGCGGCTCCTCCGACCGCCTCTCCCTCTCCAGCGCCCCCTaGTGGCCACCGAGGGCATCCTCGGCGCCGCGTTCGGCCGGCTCC +
Preference number: 5 (lower is better)
Translates to: EMGGSSDRLSLSSAP*WPPRASSAPRSAGS
Trigger: GGAGCCGGCCGAACGCGGCGCCGAGGATGCCCTCGGTGGCCACCAGGGGGCGCTGGAGAGGGAGAGGCGGTCGGAGGAGCCGCCCATCTC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS TCA 90 bp GCTCTGCCCGGGCCATTTCCAAGACTTCCCGCAGAAGGTGGAAGGTaGGATCCAGAGAGATGGGCGGCTCCTCCGACCGCCTCTCCCTCT +
Preference number: 5 (lower is better)
Translates to: ALPGPFPRLPAEGGR*DPERWAAPPTASPS
Trigger: AGAGGGAGAGGCGGTCGGAGGAGCCGCCCATCTCTCTGGATCTCACCTTCCACCTTCTGCGGGAAGTCTTGGAAATGGCCCGGGCAGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS CCA 90 bp GCTAACTGCTCTGCCCGGGCCATTTCCAAGACTTCCCGCAGAAGGTaGAAGGTGAGATCCAGAGAGATGGGCGGCTCCTCCGACCGCCTC +
Preference number: 5 (lower is better)
Translates to: ANCSARAISKTSRRR*KVRSREMGGSSDRL
Trigger: GAGGCGGTCGGAGGAGCCGCCCATCTCTCTGGATCTCACCTTCCACCTTCTGCGGGAAGTCTTGGAAATGGCCCGGGCAGAGCAGTTAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS TCA 90 bp CCCAGGCGGAGGAAGTATTCTTCACCCATGCGGATCAGAACCGGCTaGGGTTGCTGGGGCTGCTCCGGCTGCAAGAAATTCAAGGGCTGC +
Preference number: 5 (lower is better)
Translates to: PRRRKYSSPMRIRTG*GCWGCSGCKKFKGC
Trigger: GCAGCCCTTGAATTTCTTGCAGCCGGAGCAGCCCCAGCAACCTCAGCCGGTTCTGATCCGCATGGGTGAAGAATACTTCCTCCGCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS CCA 72 bp TCCTCCGACCGCCTCTCCCTCTCCAGCGCCCCCTGGTaGCCACCGAGGGCATCCTCGGCGCCGCGTTCGGCC +
Preference number: 6 (lower is better)
Translates to: SSDRLSLSSAPW*PPRASSAPRSA
Trigger: GGCCGAACGCGGCGCCGAGGATGCCCTCGGTGGCCACCAGGGGGCGCTGGAGAGGGAGAGGCGGTCGGAGGA
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS TCA 72 bp CGTTCGGCCGGCTCCGCGCGGCTGTCGAGCGAGCGCTaGGGCATCTGCAGCTGCTGCAGCAACACGCGGAAA +
Preference number: 6 (lower is better)
Translates to: RSAGSARLSSER*GICSCCSNTRK
Trigger: TTTCCGCGTGTTGCTGCAGCAGCTGCAGATGCCTCAGCGCTCGCTCGACAGCCGCGCGGAGCCGGCCGAACG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS CCA 72 bp TGCTGCAGCAACACGCGGAAAAAGTTAGCCGCAGCCTaGTCGTGCGAGGGGCGGCTGCCGCGACCCGCGGTG +
Preference number: 6 (lower is better)
Translates to: CCSNTRKKLAAA*SCEGRLPRPAV
Trigger: CACCGCGGGTCGCGGCAGCCGCCCCTCGCACGACCAGGCTGCGGCTAACTTTTTCCGCGTGTTGCTGCAGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS TCA 72 bp GGGCCATTTCCAAGACTTCCCGCAGAAGGTGGAAGGTaGGATCCAGAGAGATGGGCGGCTCCTCCGACCGCC +
Preference number: 6 (lower is better)
Translates to: GPFPRLPAEGGR*DPERWAAPPTA
Trigger: GGCGGTCGGAGGAGCCGCCCATCTCTCTGGATCTCACCTTCCACCTTCTGCGGGAAGTCTTGGAAATGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS CAA 90 bp GCGGAGGAAGTATTCTTCACCCATGCGGATCAGAACCGGCTGAGGTaGCTGGGGCTGCTCCGGCTGCAAGAAATTCAAGGGCTGCGGGGC +
Preference number: 6 (lower is better)
Translates to: AEEVFFTHADQNRLR*LGLLRLQEIQGLRG
Trigger: GCCCCGCAGCCCTTGAATTTCTTGCAGCCGGAGCAGCCCCAGCAACCTCAGCCGGTTCTGATCCGCATGGGTGAAGAATACTTCCTCCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS CCA 72 bp TCTGCCCGGGCCATTTCCAAGACTTCCCGCAGAAGGTaGAAGGTGAGATCCAGAGAGATGGGCGGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: SARAISKTSRRR*KVRSREMGGSS
Trigger: GGAGGAGCCGCCCATCTCTCTGGATCTCACCTTCCACCTTCTGCGGGAAGTCTTGGAAATGGCCCGGGCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5
CDS TCA 72 bp AGGAAGTATTCTTCACCCATGCGGATCAGAACCGGCTaGGGTTGCTGGGGCTGCTCCGGCTGCAAGAAATTC +
Preference number: 6 (lower is better)
Translates to: RKYSSPMRIRTG*GCWGCSGCKKF
Trigger: GAATTTCTTGCAGCCGGAGCAGCCCCAGCAACCTCAGCCGGTTCTGATCCGCATGGGTGAAGAATACTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061294.5