Pregenerated sensors for CREG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040713Ensembl transcript IDs: ENSMUST00000040298.5, ENSMUST00000111432.10, ENSMUST00000140769.2
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGACTCCTGAGGCAGCTGTGTGAGGACAGCACCCCTCAGGCACAGTaGCCGTCGGGCACAAAGCACCTGCACCTCTCTTCCTCCAGAGCC | + |
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Preference number: 1 (lower is better) Translates to: RLLRQLCEDSTPQAQ*PSGTKHLHLSSSRA Trigger: GGCTCTGGAGGAAGAGAGGTGCAGGTGCTTTGTGCCCGACGGCCACTGTGCCTGAGGGGTGCTGTCCTCACACAGCTGCCTCAGGAGTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR CCA 90 bp | GTGGTTATCTCCCATGGAGGACTCCGGGCTGCAGTGCCAGGAGCCTaGAGATACAGAGTGCCCGAGAAGGGCTGGGGTTATGGTTGGTGT | + |
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Preference number: 1 (lower is better) Translates to: VVISHGGLRAAVPGA*RYRVPEKGWGYGWC Trigger: ACACCAACCATAACCCCAGCCCTTCTCGGGCACTCTGTATCTCCAGGCTCCTGGCACTGCAGCCCGGAGTCCTCCATGGGAGATAACCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR GCA 90 bp | CTCTCTTCCTCCAGAGCCAATGGGCGATCTACAGCTGGTCTATGTTaGCCTTCTGTGGGCACCACTGAGGAAAAGCCACCGGGAATGGCT | + |
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Preference number: 1 (lower is better) Translates to: LSSSRANGRSTAGLC*PSVGTTEEKPPGMA Trigger: AGCCATTCCCGGTGGCTTTTCCTCAGTGGTGCCCACAGAAGGGCAACATAGACCAGCTGTAGATCGCCCATTGGCTCTGGAGGAAGAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR GCA 90 bp | AGAGAGCTATGGTCTCATACTAGACAATCGCTCTACCAAGAAAGCTaGACCCCAGCTCCTGTGTGTGTGTGTGTTTTGAAGGATGAGAAA | + |
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Preference number: 1 (lower is better) Translates to: RELWSHTRQSLYQES*TPAPVCVCVLKDEK Trigger: TTTCTCATCCTTCAAAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGCGATTGTCTAGTATGAGACCATAGCTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR CCA 90 bp | CAAACAGCGAATCCCTTGCATAGTCCTCTTCTGTCTTGTTCACCTTaGTCACAGTTCCCGACATCATTATATGAACACACAGGGGACTCT | + |
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Preference number: 1 (lower is better) Translates to: QTANPLHSPLLSCSP*SQFPTSLYEHTGDS Trigger: AGAGTCCCCTGTGTGTTCATATAATGATGTCGGGAACTGTGACCAAGGTGAACAAGACAGAAGAGGACTATGCAAGGGATTCGCTGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| 3UTR GCA 90 bp | AAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCTGCTTCACTaGAGCGTGACGTTAAAATATTCTTCAGGTGTCACTACTTTAGGT | + |
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Preference number: 1 (lower is better) Translates to: KTLLWCDSVHHILLH*SVTLKYSSGVTTLG Trigger: ACCTAAAGTAGTGACACCTGAAGAATATTTTAACGTCACGCTGCAGTGAAGCAGGATATGGTGGACTGAGTCACACCAGAGAAGTGTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| 3UTR-3UTR CCA 90 bp | ATGATTTCCTGGAACTGGAGTGATGGCCAGTGTGCCTGTCTGACTCCAGCGCCAACGGGTGGACGTGAGTaGGAAGCTCCGTGTGTGGCC | + |
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Preference number: 2 (lower is better) Translates to: MISWNWSDGQCACLTPAPTGGRE*EAPCVA Trigger: GGCCACACACGGAGCTTCCCACTCACGTCCACCCGT...TGGCGCTGGAGTCAGACAGGCACACTGGCCATCACTCCAGTTCCAGGAAATCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR TCA 90 bp | ATGATTTCCTGGAACTGGAGTGATGGCCAGTGTGCCTGTCTGACTCCAGCGCCATCCAGCGCCAGGTCCTaGACTTGGGTCCCTGCTAGA | + |
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Preference number: 2 (lower is better) Translates to: MISWNWSDGQCACLTPAPSSARS*TWVPAR Trigger: TCTAGCAGGGACCCAAGTTCAGGACCTGGCGCTGGA...TGGCGCTGGAGTCAGACAGGCACACTGGCCATCACTCCAGTTCCAGGAAATCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR TCA 90 bp | TCTACAGCTGGTCTATGTTGCCCTTCTGTGGGCACCACTGAGGAAAAGCCACCGGGTGGCAGAGTAAGCTaGCAGCTGGAGACGTCCCAA | + |
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Preference number: 2 (lower is better) Translates to: STAGLCCPSVGTTEEKPPGGRVS*QLETSQ Trigger: TTGGGACGTCTCCAGCTGTCAGCTTACTCTGCCACC...CGGTGGCTTTTCCTCAGTGGTGCCCACAGAAGGGCAACATAGACCAGCTGTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCAGTGCCAGGAGCCTGGAGATACAGAGTGCCCGAGAAGGGCTGGGGTTATGTATGTTGCCCTTCTGTaGGCACCACTGAGGAAAAGC | + |
|
Preference number: 2 (lower is better) Translates to: LQCQEPGDTECPRRAGVMYVALL*APLRKS Trigger: GCTTTTCCTCAGTGGTGCCCACAGAAGGGCAACATA...CATAACCCCAGCCCTTCTCGGGCACTCTGTATCTCCAGGCTCCTGGCACTGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR GCA 90 bp | CAAGCAGGGCCAACCCTTCAAGTGTGCATGAGCCTCCGAAGACACTTCTCTGGTTGGCTGGAAGGCCAGTaGTTCATCTCAGGGTGTCGA | + |
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Preference number: 2 (lower is better) Translates to: QAGPTLQVCMSLRRHFSGWLEGQ*FISGCR Trigger: TCGACACCCTGAGATGAAGCACTGGCCTTCCAGCCA...ACCAGAGAAGTGTCTTCGGAGGCTCATGCACACTTGAAGGGTTGGCCCTGCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| 3UTR-3UTR TCA 90 bp | TGGGCACCACTGAGGAAAAGCCACCGGGAATGGCTGAAAGAAAACTTCCTTGGTGGTGGCAGAGTAAGCTaGCAGCTGGAGACGTCCCAA | + |
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Preference number: 2 (lower is better) Translates to: WAPLRKSHREWLKENFLGGGRVS*QLETSQ Trigger: TTGGGACGTCTCCAGCTGTCAGCTTACTCTGCCACC...ACCAAGGAAGTTTTCTTTCAGCCATTCCCGGTGGCTTTTCCTCAGTGGTGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR GCA 90 bp | GCTCTACCAAGAAAGCTGCACCCCAGCTCCTGTGTGTGTGTGTGTTTTGAAGGACGGGCACAAAGCACCTaGACCTCTCTTCCTCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: ALPRKLHPSSCVCVCFEGRAQST*TSLPPE Trigger: CTCTGGAGGAAGAGAGGTGCAGGTGCTTTGTGCCCG...TCCTTCAAAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR TCA 90 bp | CTGAGCCAACCCTCTAGGCCAGAAGCATGTTGTGTTGTTGTTGTAGTTTGTTTCCCTCTGACAGACTCCTaGGGCAGCTGTGTGAGGACA | + |
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Preference number: 2 (lower is better) Translates to: LSQPSRPEACCVVVVVCFPLTDS*GSCVRT Trigger: TGTCCTCACACAGCTGCCTCAGGAGTCTGTCAGAGG...GAAACAAACTACAACAACAACACAACATGCTTCTGGCCTAGAGGGTTGGCTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR CCA 90 bp | ATCGCTCTACCAAGAAAGCTGCACCCCAGCTCCTGTGTGTGTGTGTGTTTTGAATATGTTGCCCTTCTGTaGGCACCACTGAGGAAAAGC | + |
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Preference number: 2 (lower is better) Translates to: IALPRKLHPSSCVCVCFEYVALL*APLRKS Trigger: GCTTTTCCTCAGTGGTGCCCACAGAAGGGCAACATA...TTCAAAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGCGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR CCA 90 bp | GACAATCGCTCTACCAAGAAAGCTGCACCCCAGCTCCTGTGTGTGTGTGTGTTTTGGGGAAGAGAGCTATaGTCTCATACTAGACAATCG | + |
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Preference number: 2 (lower is better) Translates to: DNRSTKKAAPQLLCVCVFWGREL*SHTRQS Trigger: CGATTGTCTAGTATGAGACCATAGCTCTCTTCCCCA...AAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGCGATTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR CCA 90 bp | CTGAGCCAACCCTCTAGGCCAGAAGCATGTTGTGTTGTTGTTGTAGTTTGTTTCGCAAAGAACCAGTTATaGCTGGAAGGCCAGTGCTTC | + |
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Preference number: 2 (lower is better) Translates to: LSQPSRPEACCVVVVVCFAKNQL*LEGQCF Trigger: GAAGCACTGGCCTTCCAGCCATAACTGGTTCTTTGC...GAAACAAACTACAACAACAACACAACATGCTTCTGGCCTAGAGGGTTGGCTCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGTTGTTGTTGTAGTTTGTTTCTATGCCGTGGTACCGTGGTTATCTCCCATGCCCGACATCATTATATaGACACACAGGGGACTCTGG | + |
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Preference number: 2 (lower is better) Translates to: CVVVVVCFYAVVPWLSPMPDIII*THRGLW Trigger: CCAGAGTCCCCTGTGTGTTCATATAATGATGTCGGG...CATGGGAGATAACCACGGTACCACGGCATAGAAACAAACTACAACAACAACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| 3UTR-3UTR CCA 90 bp | CTGAGCCAACCCTCTAGGCCAGAAGCATGTTGTGTTGTTGTTGTAGTTTGTTTCAGGTATATGATTTCCTaGAACTGGAGTGATGGCCAG | + |
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Preference number: 2 (lower is better) Translates to: LSQPSRPEACCVVVVVCFRYMIS*NWSDGQ Trigger: CTGGCCATCACTCCAGTTCCAGGAAATCATATACCT...GAAACAAACTACAACAACAACACAACATGCTTCTGGCCTAGAGGGTTGGCTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR CCA 90 bp | CAGATACGGCTTATTTTTAATTTAGCAAAGAACCAGTTATGGCTGGAAGGCCAGAGTCAGCGTAGCCTCTaGATTTTCCATGGCAAGGGC | + |
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Preference number: 2 (lower is better) Translates to: QIRLIFNLAKNQLWLEGQSQRSL*IFHGKG Trigger: GCCCTTGCCATGGAAAATCCAGAGGCTACGCTGACT...CTGGCCTTCCAGCCATAACTGGTTCTTTGCTAAATTAAAAATAAGCCGTATCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGTTGTTGTTGTAGTTTGTTTCTATGCCGTGGTACCGTGGTTATCTCCCATGTTTTTGTTTCAATGCTaGGGAAGAGAGCTATGGTCT | + |
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Preference number: 2 (lower is better) Translates to: CVVVVVCFYAVVPWLSPMFLFQC*GRELWS Trigger: AGACCATAGCTCTCTTCCCCAGCATTGAAACAAAAA...CATGGGAGATAACCACGGTACCACGGCATAGAAACAAACTACAACAACAACACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR CAA 90 bp | GATTTCTATCTCTTTCTCCAACATGATGGCTCATGTTCAACTCTTTaGCTGTTTAAGAAGTCTGATACGCACACTCAATTAAAAGGACTC | + |
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Preference number: 2 (lower is better) Translates to: DFYLFLQHDGSCSTL*LFKKSDTHTQLKGL Trigger: GAGTCCTTTTAATTGAGTGTGCGTATCAGACTTCTTAAACAGCAAAAGAGTTGAACATGAGCCATCATGTTGGAGAAAGAGATAGAAATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR CCA 72 bp | AGGCAGCTGTGTGAGGACAGCACCCCTCAGGCACAGTaGCCGTCGGGCACAAAGCACCTGCACCTCTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: RQLCEDSTPQAQ*PSGTKHLHLSS Trigger: GGAAGAGAGGTGCAGGTGCTTTGTGCCCGACGGCCACTGTGCCTGAGGGGTGCTGTCCTCACACAGCTGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR CAA 90 bp | AAGCACTCTGTATCCGGGACCCACGCCCTGCCCAGGCCTCCCGACTCTAGGCCCTACAGCTGGTCTATGTaGCCCTTCTGTGGGCACCAC | + |
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Preference number: 3 (lower is better) Translates to: KHSVSGTHALPRPPDSRPYSWSM*PFCGHH Trigger: GTGGTGCCCACAGAAGGGCAACATAGACCAGCTGTA...GGGCCTAGAGTCGGGAGGCCTGGGCAGGGCGTGGGTCCCGGATACAGAGTGCTT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR GCA 72 bp | CCCCTCAGGCACAGTGGCCGTCGGGCACAAAGCACCTaGACCTCTCTTCCTCCAGAGCCAATGGGCGATCTA | + |
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Preference number: 3 (lower is better) Translates to: PLRHSGRRAQST*TSLPPEPMGDL Trigger: TAGATCGCCCATTGGCTCTGGAGGAAGAGAGGTGCAGGTGCTTTGTGCCCGACGGCCACTGTGCCTGAGGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR GCA 72 bp | TCCGGGCTGCAGTGCCAGGAGCCTGGAGATACAGAGTaGCCGAGAAGGGCTGGGGTTATGGTTGGTGTTGGG | + |
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Preference number: 3 (lower is better) Translates to: SGLQCQEPGDTE*PRRAGVMVGVG Trigger: CCCAACACCAACCATAACCCCAGCCCTTCTCGGGCACTCTGTATCTCCAGGCTCCTGGCACTGCAGCCCGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR GCA 72 bp | ATTCATTCAAGCACTCTGTATCCGGGACCCACGCCCTaGCCAGGCCTCCCGACTCTAGGCCCCTCTGACAGA | + |
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Preference number: 3 (lower is better) Translates to: IHSSTLYPGPTP*PGLPTLGPSDR Trigger: TCTGTCAGAGGGGCCTAGAGTCGGGAGGCCTGGGCAGGGCGTGGGTCCCGGATACAGAGTGCTTGAATGAAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR TCA 72 bp | TTTCCTGGAACTGGAGTGATGGCCAGTGTGCCTGTCTaGCTCCAGCGCCAGGTCCTGAACTTGGGTCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: FPGTGVMASVPV*LQRQVLNLGPC Trigger: GCAGGGACCCAAGTTCAGGACCTGGCGCTGGAGTCAGACAGGCACACTGGCCATCACTCCAGTTCCAGGAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR CCA 72 bp | ATGGGCGATCTACAGCTGGTCTATGTTGCCCTTCTGTaGGCACCACTGAGGAAAAGCCACCGGGAATGGCTG | + |
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Preference number: 3 (lower is better) Translates to: MGDLQLVYVALL*APLRKSHREWL Trigger: CAGCCATTCCCGGTGGCTTTTCCTCAGTGGTGCCCACAGAAGGGCAACATAGACCAGCTGTAGATCGCCCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR TCA 72 bp | TGGCCAGTGTGCCTGTCTGACTCCAGCGCCAGGTCCTaGACTTGGGTCCCTGCTAGAGCAATCTTCTTAAGT | + |
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Preference number: 3 (lower is better) Translates to: WPVCLSDSSARS*TWVPARAIFLS Trigger: ACTTAAGAAGATTGCTCTAGCAGGGACCCAAGTTCAGGACCTGGCGCTGGAGTCAGACAGGCACACTGGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR TCA 72 bp | TGGAGACTAGAGGTATATGATTTCCTGGAACTGGAGTaGTGGCCAGTGTGCCTGTCTGACTCCAGCGCCAGG | + |
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Preference number: 3 (lower is better) Translates to: WRLEVYDFLELE*WPVCLSDSSAR Trigger: CCTGGCGCTGGAGTCAGACAGGCACACTGGCCATCACTCCAGTTCCAGGAAATCATATACCTCTAGTCTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR CAA 90 bp | GCTCTACCAAGAAAGCTGCACCCCAGCTCCTGTGTGTGTGTGTGTTTTGAAGGATACAGCTGGTCTATGTaGCCCTTCTGTGGGCACCAC | + |
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Preference number: 3 (lower is better) Translates to: ALPRKLHPSSCVCVCFEGYSWSM*PFCGHH Trigger: GTGGTGCCCACAGAAGGGCAACATAGACCAGCTGTA...TCCTTCAAAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR CCA 72 bp | CCTTCAAGTGTGCATGAGCCTCCGAAGACACTTCTCTaGTGTGACTCAGTCCACCATATCCTGCTTCACTGC | + |
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Preference number: 3 (lower is better) Translates to: PSSVHEPPKTLL*CDSVHHILLHC Trigger: GCAGTGAAGCAGGATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCACACTTGAAGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| 3UTR-3UTR CAA 90 bp | CTGAGCCAACCCTCTAGGCCAGAAGCATGTTGTGTTGTTGTTGTAGTTTGTTTCCTCCGTGTGTGGCCATaGCTGTCCTCGACTGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: LSQPSRPEACCVVVVVCFLRVWP*LSSTEG Trigger: TCCTTCAGTCGAGGACAGCAATGGCCACACACGGAG...GAAACAAACTACAACAACAACACAACATGCTTCTGGCCTAGAGGGTTGGCTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR TCA 72 bp | GCAAACAAGATTAAAACAAGAGGTGGCAGAGTAAGCTaGCAGCTGGAGACGTCCCAAGCAGGGCCAACCCTT | + |
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Preference number: 3 (lower is better) Translates to: ANKIKTRGGRVS*QLETSQAGPTL Trigger: AAGGGTTGGCCCTGCTTGGGACGTCTCCAGCTGTCAGCTTACTCTGCCACCTCTTGTTTTAATCTTGTTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR-3UTR CAA 90 bp | GCTCTACCAAGAAAGCTGCACCCCAGCTCCTGTGTGTGTGTGTGTTTTGAAGGAATAGAGGACCCAGTTTaGCCTTGTGATGGATCAGCT | + |
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Preference number: 3 (lower is better) Translates to: ALPRKLHPSSCVCVCFEGIEDPV*PCDGSA Trigger: AGCTGATCCATCACAAGGCAAAACTGGGTCCTCTAT...TCCTTCAAAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR GCA 72 bp | TGGTCTCATACTAGACAATCGCTCTACCAAGAAAGCTaGACCCCAGCTCCTGTGTGTGTGTGTGTTTTGAAG | + |
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Preference number: 3 (lower is better) Translates to: WSHTRQSLYQES*TPAPVCVCVLK Trigger: CTTCAAAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGCGATTGTCTAGTATGAGACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR GCA 72 bp | AATTTAGCAAAGAACCAGTTATGGCTGGAAGGCCAGTaGTTCATCTCAGGGTGTCGAACAAACAGCGAATCC | + |
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Preference number: 3 (lower is better) Translates to: NLAKNQLWLEGQ*FISGCRTNSES Trigger: GGATTCGCTGTTTGTTCGACACCCTGAGATGAAGCACTGGCCTTCCAGCCATAACTGGTTCTTTGCTAAATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| 3UTR-3UTR CAA 90 bp | TGTGTTGTTGTTGTAGTTTGTTTCTATGCCGTGGTACCGTGGTTATCTCCCATGATAGAGGACCCAGTTTaGCCTTGTGATGGATCAGCT | + |
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Preference number: 3 (lower is better) Translates to: CVVVVVCFYAVVPWLSPMIEDPV*PCDGSA Trigger: AGCTGATCCATCACAAGGCAAAACTGGGTCCTCTAT...CATGGGAGATAACCACGGTACCACGGCATAGAAACAAACTACAACAACAACACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| 3UTR TCA 72 bp | AAAGCTGCACCCCAGCTCCTGTGTGTGTGTGTGTTTTaGAGGATGAGAAATAAATATACAGTCTACTTGGGT | + |
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Preference number: 3 (lower is better) Translates to: KAAPQLLCVCVF*RMRNKYTVYLG Trigger: ACCCAAGTAGACTGTATATTTATTTCTCATCCTTCAAAACACACACACACACAGGAGCTGGGGTGCAGCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS-3UTR CCA 90 bp | CTGCAGTGCCAGGAGCCTGGAGATACAGAGTGCCCGAGAAGGGCTGGGGTTATGACGTCCCAGTCCCCGTaGTCCCGGCCTCCGCGACCC | + |
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Preference number: 4 (lower is better) Translates to: LQCQEPGDTECPRRAGVMTSQSP*SRPPRP Trigger: GGGTCGCGGAGGCCGGGACCACGGGGACTGGGACGT...CATAACCCCAGCCCTTCTCGGGCACTCTGTATCTCCAGGCTCCTGGCACTGCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS-3UTR GCA 90 bp | AAGCACTCTGTATCCGGGACCCACGCCCTGCCCAGGCCTCCCGACTCTAGGCCCAGGTCGCTCACGGCTTaGTGCAGTGGACTCAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: KHSVSGTHALPRPPDSRPRSLTA*CSGLRY Trigger: GTACCTGAGTCCACTGCAGCAAGCCGTGAGCGACCT...GGGCCTAGAGTCGGGAGGCCTGGGCAGGGCGTGGGTCCCGGATACAGAGTGCTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS-3UTR CCA 90 bp | AAGCACTCTGTATCCGGGACCCACGCCCTGCCCAGGCCTCCCGACTCTAGGCCCCACGGCTTGCTGCAGTaGACTCAGGTACATGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: KHSVSGTHALPRPPDSRPHGLLQ*TQVHVG Trigger: CCCTACATGTACCTGAGTCCACTGCAGCAAGCCGTG...GGGCCTAGAGTCGGGAGGCCTGGGCAGGGCGTGGGTCCCGGATACAGAGTGCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS-3UTR CCA 90 bp | TGCCCAGGCCTCCCGACTCTAGGCCCCTCTGACAGACTCCTGAGGCAGCTGTGTGTCAGGCTTCATTTCTaGGCTCCTGTGTGGCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: CPGLPTLGPSDRLLRQLCVRLHF*APVWPF Trigger: GAAAGGCCACACAGGAGCCCAGAAATGAAGCCTGAC...ACACAGCTGCCTCAGGAGTCTGTCAGAGGGGCCTAGAGTCGGGAGGCCTGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| CDS-3UTR TCA 90 bp | TGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCTGCCCCCAGTCTGAGACGTaGGTCACGAAGCGGGCCACG | + |
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Preference number: 4 (lower is better) Translates to: CMSLRRHFSGVTQSTISCPQSET*VTKRAT Trigger: CGTGGCCCGCTTCGTGACTCACGTCTCAGACTGGGG...GCAGGATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS-3UTR TCA 90 bp | GCTCTACCAAGAAAGCTGCACCCCAGCTCCTGTGTGTGTGTGTGTTTTGAAGGACCCCAGTCTGAGACGTaGGTCACGAAGCGGGCCACG | + |
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Preference number: 4 (lower is better) Translates to: ALPRKLHPSSCVCVCFEGPQSET*VTKRAT Trigger: CGTGGCCCGCTTCGTGACTCACGTCTCAGACTGGGG...TCCTTCAAAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS-3UTR TCA 90 bp | AGTGTGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCAGCGAGCCCCAGTCTaGGACGTGAGTCACGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: SVHEPPKTLLWCDSVHHIQRAPV*DVSHEA Trigger: CGCTTCGTGACTCACGTCTCAGACTGGGGCTCGCTG...GATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCACACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS-3UTR CCA 90 bp | TGTGTTGTTGTTGTAGTTTGTTTCTATGCCGTGGTACCGTGGTTATCTCCCATGACGTCCCAGTCCCCGTaGTCCCGGCCTCCGCGACCC | + |
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Preference number: 4 (lower is better) Translates to: CVVVVVCFYAVVPWLSPMTSQSP*SRPPRP Trigger: GGGTCGCGGAGGCCGGGACCACGGGGACTGGGACGT...CATGGGAGATAACCACGGTACCACGGCATAGAAACAAACTACAACAACAACACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS-3UTR CCA 90 bp | GTGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCTGTTCTGGGCTCCTGTGTaGCCTTTCCCTCCCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: VHEPPKTLLWCDSVHHILFWAPV*PFPPRL Trigger: CAGCCTGGGAGGGAAAGGCCACACAGGAGCCCAGAA...CAGGATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| CDS-3UTR GCA 90 bp | TGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCTGCTGGCTGGAAGGCCAGTaGTTCATCTCAGGGTGTCGA | + |
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Preference number: 4 (lower is better) Translates to: CMSLRRHFSGVTQSTISCWLEGQ*FISGCR Trigger: TCGACACCCTGAGATGAAGCACTGGCCTTCCAGCCA...GCAGGATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040298.5 ENSMUST00000111432.10 |
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| CDS-3UTR TCA 90 bp | TCTACAGCTGGTCTATGTTGCCCTTCTGTGGGCACCACTGAGGAAAAGCCACCGCCCGACATCATTATATaGACACACAGGGGACTCTGG | + |
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Preference number: 4 (lower is better) Translates to: STAGLCCPSVGTTEEKPPPDIII*THRGLW Trigger: CCAGAGTCCCCTGTGTGTTCATATAATGATGTCGGG...CGGTGGCTTTTCCTCAGTGGTGCCCACAGAAGGGCAACATAGACCAGCTGTAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111432.10 |
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| CDS-3UTR GCA 90 bp | GACAATCGCTCTACCAAGAAAGCTGCACCCCAGCTCCTGTGTGTGTGTGTGTTTTGGCTGGAAGGCCAGTaGTTCATCTCAGGGTGTCGA | + |
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Preference number: 4 (lower is better) Translates to: DNRSTKKAAPQLLCVCVFWLEGQ*FISGCR Trigger: TCGACACCCTGAGATGAAGCACTGGCCTTCCAGCCA...AAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGCGATTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111432.10 |
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| CDS-3UTR TCA 90 bp | GTGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCTGCCCGACATCATTATATaGACACACAGGGGACTCTGG | + |
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Preference number: 4 (lower is better) Translates to: VHEPPKTLLWCDSVHHILPDIII*THRGLW Trigger: CCAGAGTCCCCTGTGTGTTCATATAATGATGTCGGG...CAGGATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040298.5 ENSMUST00000111432.10 |
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| CDS-3UTR CCA 90 bp | TGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCTGCGCAAAGAACCAGTTATaGCTGGAAGGCCAGTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: CMSLRRHFSGVTQSTISCAKNQL*LEGQCF Trigger: GAAGCACTGGCCTTCCAGCCATAACTGGTTCTTTGC...GCAGGATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040298.5 ENSMUST00000111432.10 |
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| CDS-3UTR CCA 90 bp | TGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCTGCCTGTCTTGTTCACCTTaGTCACAGTTCCCGACATCA | + |
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Preference number: 4 (lower is better) Translates to: CMSLRRHFSGVTQSTISCLSCSP*SQFPTS Trigger: TGATGTCGGGAACTGTGACCAAGGTGAACAAGACAG...GCAGGATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040298.5 ENSMUST00000111432.10 |
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| CDS-3UTR CCA 90 bp | TGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCTGCAGAACCAGTTATGGCTaGAAGGCCAGTGCTTCATCT | + |
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Preference number: 4 (lower is better) Translates to: CMSLRRHFSGVTQSTISCRTSYG*KASASS Trigger: AGATGAAGCACTGGCCTTCCAGCCATAACTGGTTCT...GCAGGATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040298.5 ENSMUST00000111432.10 |
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| CDS-3UTR CCA 90 bp | AGTGTGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCTGTCTTGTTCACCTTaGTCACAGTTCCCGACATCA | + |
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Preference number: 4 (lower is better) Translates to: SVHEPPKTLLWCDSVHHILSCSP*SQFPTS Trigger: TGATGTCGGGAACTGTGACCAAGGTGAACAAGACAG...GATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCACACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040298.5 ENSMUST00000111432.10 |
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| CDS-3UTR CCA 90 bp | GACAATCGCTCTACCAAGAAAGCTGCACCCCAGCTCCTGTGTGTGTGTGTGTTTAGAACCAGTTATGGCTaGAAGGCCAGTGCTTCATCT | + |
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Preference number: 4 (lower is better) Translates to: DNRSTKKAAPQLLCVCVFRTSYG*KASASS Trigger: AGATGAAGCACTGGCCTTCCAGCCATAACTGGTTCT...AAACACACACACACACAGGAGCTGGGGTGCAGCTTTCTTGGTAGAGCGATTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111432.10 |
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| CDS-3UTR CCA 90 bp | TCCCGACATCATTATATGAACACACAGGGGACTCTGGGGATCAAATCCATGATTCACGGCTTGCTGCAGTaGACTCAGGTACATGTAGGG | + |
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Preference number: 4 (lower is better) Translates to: SRHHYMNTQGTLGIKSMIHGLLQ*TQVHVG Trigger: CCCTACATGTACCTGAGTCCACTGCAGCAAGCCGTG...AATCATGGATTTGATCCCCAGAGTCCCCTGTGTGTTCATATAATGATGTCGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| CDS-3UTR GCA 90 bp | CAGATACGGCTTATTTTTAATTTAGCAAAGAACCAGTTATGGCTGGAAGGCCAGAGGTCGCTCACGGCTTaGTGCAGTGGACTCAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: QIRLIFNLAKNQLWLEGQRSLTA*CSGLRY Trigger: GTACCTGAGTCCACTGCAGCAAGCCGTGAGCGACCT...CTGGCCTTCCAGCCATAACTGGTTCTTTGCTAAATTAAAAATAAGCCGTATCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| 3UTR CAA 72 bp | CTCTTTCTCCAACATGATGGCTCATGTTCAACTCTTTaGCTGTTTAAGAAGTCTGATACGCACACTCAATTA | + |
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Preference number: 4 (lower is better) Translates to: LFLQHDGSCSTL*LFKKSDTHTQL Trigger: TAATTGAGTGTGCGTATCAGACTTCTTAAACAGCAAAAGAGTTGAACATGAGCCATCATGTTGGAGAAAGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS CCA 90 bp | CGGGGTGGCAGCGGAGGCAATCGCCTGTCCACGTCCCAGTCCCCGTaGTCCCGGCCTCCGCGACCCGAGGCCGGCGACACCAGTAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: RGGSGGNRLSTSQSP*SRPPRPEAGDTSSA Trigger: GGCACTACTGGTGTCGCCGGCCTCGGGTCGCGGAGGCCGGGACCACGGGGACTGGGACGTGGACAGGCGATTGCCTCCGCTGCCACCCCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS CCA 90 bp | GACGTGAGTCACGAAGCGGGCCACGCGCGGCCCGTCTTCGCGGGGTaGCAGCGGAGGCAATCGCCTGTCCACGTCCCAGTCCCCGTGGTC | + |
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Preference number: 5 (lower is better) Translates to: DVSHEAGHARPVFAG*QRRQSPVHVPVPVV Trigger: GACCACGGGGACTGGGACGTGGACAGGCGATTGCCTCCGCTGCCACCCCGCGAAGACGGGCCGCGCGTGGCCCGCTTCGTGACTCACGTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS TCA 90 bp | TCCTTTATTGTGGAGATAGTGGCCAGCGAGCCCCAGTCTGAGACGTaGGTCACGAAGCGGGCCACGCGCGGCCCGTCTTCGCGGGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: SFIVEIVASEPQSET*VTKRATRGPSSRGG Trigger: GCCACCCCGCGAAGACGGGCCGCGCGTGGCCCGCTTCGTGACTCACGTCTCAGACTGGGGCTCGCTGGCCACTATCTCCACAATAAAGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS TCA 90 bp | GCGCACCTCCTTTATTGTGGAGATAGTGGCCAGCGAGCCCCAGTCTaGGACGTGAGTCACGAAGCGGGCCACGCGCGGCCCGTCTTCGCG | + |
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Preference number: 5 (lower is better) Translates to: AHLLYCGDSGQRAPV*DVSHEAGHARPVFA Trigger: CGCGAAGACGGGCCGCGCGTGGCCCGCTTCGTGACTCACGTCTCAGACTGGGGCTCGCTGGCCACTATCTCCACAATAAAGGAGGTGCGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS CCA 90 bp | AGGCTGTTTCCACCTGAGCTGCAGGTCGCTCACGGCTTGCTGCAGTaGACTCAGGTACATGTAGGGCTCGCCCGTGCCTTCTCCCGGAGG | + |
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Preference number: 5 (lower is better) Translates to: RLFPPELQVAHGLLQ*TQVHVGLARAFSRR Trigger: CCTCCGGGAGAAGGCACGGGCGAGCCCTACATGTACCTGAGTCCACTGCAGCAAGCCGTGAGCGACCTGCAGCTCAGGTGGAAACAGCCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| CDS CCA 90 bp | CGTAGCCTCTGGATTTTCCTGCAGGTCGCTCACGGCTTGCTGCAGTaGACTCAGGTACATGTAGGGCTCGCCCGTGCCTTCTCCCGGAGG | + |
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Preference number: 5 (lower is better) Translates to: RSLWIFLQVAHGLLQ*TQVHVGLARAFSRR Trigger: CCTCCGGGAGAAGGCACGGGCGAGCCCTACATGTACCTGAGTCCACTGCAGCAAGCCGTGAGCGACCTGCAGGAAAATCCAGAGGCTACG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111432.10 |
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| CDS-3UTR CAA 90 bp | TCTACAGCTGGTCTATGTTGCCCTTCTGTGGGCACCACTGAGGAAAAGCCACCGCAAACAGCGAATCCCTaGCATAGTCCTCTTCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: STAGLCCPSVGTTEEKPPQTANP*HSPLLS Trigger: AGACAGAAGAGGACTATGCAAGGGATTCGCTGTTTG...CGGTGGCTTTTCCTCAGTGGTGCCCACAGAAGGGCAACATAGACCAGCTGTAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111432.10 |
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| CDS-3UTR CAA 90 bp | AGTGTGCATGAGCCTCCGAAGACACTTCTCTGGTGTGACTCAGTCCACCATATCCAAACAGCGAATCCCTaGCATAGTCCTCTTCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: SVHEPPKTLLWCDSVHHIQTANP*HSPLLS Trigger: AGACAGAAGAGGACTATGCAAGGGATTCGCTGTTTG...GATATGGTGGACTGAGTCACACCAGAGAAGTGTCTTCGGAGGCTCATGCACACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040298.5 ENSMUST00000111432.10 |
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| CDS CCA 72 bp | AGCGGAGGCAATCGCCTGTCCACGTCCCAGTCCCCGTaGTCCCGGCCTCCGCGACCCGAGGCCGGCGACACC | + |
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Preference number: 6 (lower is better) Translates to: SGGNRLSTSQSP*SRPPRPEAGDT Trigger: GGTGTCGCCGGCCTCGGGTCGCGGAGGCCGGGACCACGGGGACTGGGACGTGGACAGGCGATTGCCTCCGCT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS CCA 72 bp | CACGAAGCGGGCCACGCGCGGCCCGTCTTCGCGGGGTaGCAGCGGAGGCAATCGCCTGTCCACGTCCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: HEAGHARPVFAG*QRRQSPVHVPV Trigger: GACTGGGACGTGGACAGGCGATTGCCTCCGCTGCCACCCCGCGAAGACGGGCCGCGCGTGGCCCGCTTCGTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS TCA 72 bp | GTGGAGATAGTGGCCAGCGAGCCCCAGTCTGAGACGTaGGTCACGAAGCGGGCCACGCGCGGCCCGTCTTCG | + |
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Preference number: 6 (lower is better) Translates to: VEIVASEPQSET*VTKRATRGPSS Trigger: CGAAGACGGGCCGCGCGTGGCCCGCTTCGTGACTCACGTCTCAGACTGGGGCTCGCTGGCCACTATCTCCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS TCA 72 bp | CTTTATTGTGGAGATAGTGGCCAGCGAGCCCCAGTCTaGGACGTGAGTCACGAAGCGGGCCACGCGCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: LYCGDSGQRAPV*DVSHEAGHARP Trigger: GGGCCGCGCGTGGCCCGCTTCGTGACTCACGTCTCAGACTGGGGCTCGCTGGCCACTATCTCCACAATAAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111432.10 ENSMUST00000140769.2 |
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| CDS CCA 72 bp | CCACCTGAGCTGCAGGTCGCTCACGGCTTGCTGCAGTaGACTCAGGTACATGTAGGGCTCGCCCGTGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: PPELQVAHGLLQ*TQVHVGLARAF Trigger: GAAGGCACGGGCGAGCCCTACATGTACCTGAGTCCACTGCAGCAAGCCGTGAGCGACCTGCAGCTCAGGTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| CDS TCA 72 bp | TCCTGTGTGGCCTTTCCCTCCCAGGCTGTTTCCACCTaGGCTGCAGGTCGCTCACGGCTTGCTGCAGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: SCVAFPSQAVST*AAGRSRLAAVD Trigger: GTCCACTGCAGCAAGCCGTGAGCGACCTGCAGCTCAGGTGGAAACAGCCTGGGAGGGAAAGGCCACACAGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| CDS GCA 72 bp | TGTGGCCTTTCCCTCCCAGGCTGTTTCCACCTGAGCTaGAGGTCGCTCACGGCTTGCTGCAGTGGACTCAGG | + |
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Preference number: 6 (lower is better) Translates to: CGLSLPGCFHLS*RSLTACCSGLR Trigger: CCTGAGTCCACTGCAGCAAGCCGTGAGCGACCTGCAGCTCAGGTGGAAACAGCCTGGGAGGGAAAGGCCACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| CDS CCA 72 bp | TGGATTTTCCTGCAGGTCGCTCACGGCTTGCTGCAGTaGACTCAGGTACATGTAGGGCTCGCCCGTGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: WIFLQVAHGLLQ*TQVHVGLARAF Trigger: GAAGGCACGGGCGAGCCCTACATGTACCTGAGTCCACTGCAGCAAGCCGTGAGCGACCTGCAGGAAAATCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111432.10 |
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| CDS CCA 72 bp | CTCCACCGAGTCAGGCTTCATTTCTGGGCTCCTGTGTaGCCTTTCCCTCCCAGGCTGTTTCCACCTGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LHRVRLHFWAPV*PFPPRLFPPEL Trigger: CAGCTCAGGTGGAAACAGCCTGGGAGGGAAAGGCCACACAGGAGCCCAGAAATGAAGCCTGACTCGGTGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| CDS CCA 72 bp | TTGCCACAGACCCTCCACCGAGTCAGGCTTCATTTCTaGGCTCCTGTGTGGCCTTTCCCTCCCAGGCTGTTT | + |
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Preference number: 6 (lower is better) Translates to: LPQTLHRVRLHF*APVWPFPPRLF Trigger: AAACAGCCTGGGAGGGAAAGGCCACACAGGAGCCCAGAAATGAAGCCTGACTCGGTGGAGGGTCTGTGGCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140769.2 |
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| CDS GCA 72 bp | GCTAAAGACATAGTCAGCGTAGCCTCTGGATTTTCCTaGAGGTCGCTCACGGCTTGCTGCAGTGGACTCAGG | + |
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Preference number: 6 (lower is better) Translates to: AKDIVSVASGFS*RSLTACCSGLR Trigger: CCTGAGTCCACTGCAGCAAGCCGTGAGCGACCTGCAGGAAAATCCAGAGGCTACGCTGACTATGTCTTTAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111432.10 |
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