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Pregenerated sensors for CREB3L2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038648

Ensembl transcript IDs: ENSMUST00000041093.6

Found 225 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AACAGGAGGGCTGCCAAGATCACAGTGGCCCTGAGCTTGGCCATCTaGCAGCTGGGAATCCACCACGGTAGGGAGGGAGGAGTGGGGGAA +
Preference number: 1 (lower is better)
Translates to: NRRAAKITVALSLAI*QLGIHHGREGGVGE
Trigger: TTCCCCCACTCCTCCCTCCCTACCGTGGTGGATTCCCAGCTGGCAGATGGCCAAGCTCAGGGCCACTGTGATCTTGGCAGCCCTCCTGTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp ACACCACCCTGTAAGGGAGGGTGGCAGCCCCTTAAACAGGAGGGCTaGCAAGATCACAGTGGCCCTGAGCTTGGCCATCTGCCAGCTGGG +
Preference number: 1 (lower is better)
Translates to: TPPCKGGWQPLKQEG*QDHSGPELGHLPAG
Trigger: CCCAGCTGGCAGATGGCCAAGCTCAGGGCCACTGTGATCTTGGCAGCCCTCCTGTTTAAGGGGCTGCCACCCTCCCTTACAGGGTGGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp CTAGGCAAGGAGAGTTCACTGATGCCTGTGGCCCCTCCTGGGCTCTaGTCTGCACTGTGTAGGGAGGGTCACCCACAGGGTGCACTGAGT +
Preference number: 1 (lower is better)
Translates to: LGKESSLMPVAPPGL*SALCREGHPQGALS
Trigger: ACTCAGTGCACCCTGTGGGTGACCCTCCCTACACAGTGCAGAGCAGAGCCCAGGAGGGGCCACAGGCATCAGTGAACTCTCCTTGCCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp CACCCACAGGGTGCACTGAGTGTGGGTGTTCCCACAGACTCAGCATaGGCTTCATCTGTGCAGCCACGAGTGCACACCCCGCTGTTGAGC +
Preference number: 1 (lower is better)
Translates to: HPQGALSVGVPTDSA*ASSVQPRVHTPLLS
Trigger: GCTCAACAGCGGGGTGTGCACTCGTGGCTGCACAGATGAAGCCCATGCTGAGTCTGTGGGAACACCCACACTCAGTGCACCCTGTGGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp GCCAGGGAGACAGAGCTATTGTCCTGTGGAGATGCAGGCTGTGTATaGGTGGGTGTGGGGGTGTCCTACAAACAACACAGTGGGCAGGAG +
Preference number: 1 (lower is better)
Translates to: ARETELLSCGDAGCV*VGVGVSYKQHSGQE
Trigger: CTCCTGCCCACTGTGTTGTTTGTAGGACACCCCCACACCCACTCATACACAGCCTGCATCTCCACAGGACAATAGCTCTGTCTCCCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp CCTTCCAGTGGCCTCCTTACTGCTCTCTCCACTCTCTCCTGTGACTaGCTTTGTGGGGTGGAAGCAGAATTTATCCTGGCGGCTCTGCTC +
Preference number: 1 (lower is better)
Translates to: PSSGLLTALSTLSCD*LCGVEAEFILAALL
Trigger: GAGCAGAGCCGCCAGGATAAATTCTGCTTCCACCCCACAAAGGCAGTCACAGGAGAGAGTGGAGAGAGCAGTAAGGAGGCCACTGGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp GAGCCTGATGCCTTCAGGAATTGCACTTGCGGCCTGAAAATATGGTaGGAGCCCCATCTGCCTCTGCAGACATCCAATCAGGACTCCGGG +
Preference number: 1 (lower is better)
Translates to: EPDAFRNCTCGLKIW*EPHLPLQTSNQDSG
Trigger: CCCGGAGTCCTGATTGGATGTCTGCAGAGGCAGATGGGGCTCCCACCATATTTTCAGGCCGCAAGTGCAATTCCTGAAGGCATCAGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp CAGAGCTATTGTCCTGTGGAGATGCAGGCTGTGTATGAGTGGGTGTaGGGGTGTCCTACAAACAACACAGTGGGCAGGAGAGCCTGGGAG +
Preference number: 1 (lower is better)
Translates to: QSYCPVEMQAVYEWV*GCPTNNTVGRRAWE
Trigger: CTCCCAGGCTCTCCTGCCCACTGTGTTGTTTGTAGGACACCCCCACACCCACTCATACACAGCCTGCATCTCCACAGGACAATAGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp CCCTTTTTGTATAGCCCTGGCTATACACCACCCTGTAAGGGAGGGTaGCAGCCCCTTAAACAGGAGGGCTGCCAAGATCACAGTGGCCCT +
Preference number: 1 (lower is better)
Translates to: PFLYSPGYTPPCKGG*QPLKQEGCQDHSGP
Trigger: AGGGCCACTGTGATCTTGGCAGCCCTCCTGTTTAAGGGGCTGCCACCCTCCCTTACAGGGTGGTGTATAGCCAGGGCTATACAAAAAGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp CACCCCTCGTGTTGGCAAGAATCAGGCAGATGTCCACTCCTCAGGTaGGGACAAGATGTCTCCATTTCTCCATGGGGGCTTGCGCACACA +
Preference number: 1 (lower is better)
Translates to: HPSCWQESGRCPLLR*GQDVSISPWGLAHT
Trigger: TGTGTGCGCAAGCCCCCATGGAGAAATGGAGACATCTTGTCCCCACCTGAGGAGTGGACATCTGCCTGATTCTTGCCAACACGAGGGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp CATCCAATCAGGACTCCGGGGTACAGGGTGGAGAGAAGACTGCAATaGCGCTTTGGTCCTCTCAGTGCAGGGTCACACTGGAGTCCTAGT +
Preference number: 1 (lower is better)
Translates to: HPIRTPGYRVERRLQ*RFGPLSAGSHWSPS
Trigger: ACTAGGACTCCAGTGTGACCCTGCACTGAGAGGACCAAAGCGTCATTGCAGTCTTCTCTCCACCCTGTACCCCGGAGTCCTGATTGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp CTGGGAGAGAAGAGCCTGATGCCTTCAGGAATTGCACTTGCGGCCTaGAAATATGGTGGGAGCCCCATCTGCCTCTGCAGACATCCAATC +
Preference number: 1 (lower is better)
Translates to: LGEKSLMPSGIALAA*KYGGSPICLCRHPI
Trigger: GATTGGATGTCTGCAGAGGCAGATGGGGCTCCCACCATATTTTCAGGCCGCAAGTGCAATTCCTGAAGGCATCAGGCTCTTCTCTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp TCAGAGGAGTCACTCCTCCCGGGGAAGAATCAGGCAGTGTCTTCTTaGCACTATTGGTGGAAACAAGCCTGCTCGTTCCACCCCTATCTC +
Preference number: 1 (lower is better)
Translates to: SEESLLPGKNQAVSS*HYWWKQACSFHPYL
Trigger: GAGATAGGGGTGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTTCCCCGGGAGGAGTGACTCCTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp AGAGAGAGCCAAAGAGCTGAGTGCTGCACAGTCAGGCCGCTGCAGTaGGTAGCTCTGTTTCTGCCTAGAGAGGCAAAGACAATCTGTGAG +
Preference number: 1 (lower is better)
Translates to: RESQRAECCTVRPLQ*VALFLPREAKTICE
Trigger: CTCACAGATTGTCTTTGCCTCTCTAGGCAGAAACAGAGCTACCCACTGCAGCGGCCTGACTGTGCAGCACTCAGCTCTTTGGCTCTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp GAAAAAGACAGGATGAGACGGGCATTTCAGAGAGAGCCAAAGAGCTaGGTGCTGCACAGTCAGGCCGCTGCAGTGGGTAGCTCTGTTTCT +
Preference number: 1 (lower is better)
Translates to: EKDRMRRAFQREPKS*VLHSQAAAVGSSVS
Trigger: AGAAACAGAGCTACCCACTGCAGCGGCCTGACTGTGCAGCACTCAGCTCTTTGGCTCTCTCTGAAATGCCCGTCTCATCCTGTCTTTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp TCACCCAGACACAAGGCCTGTGAGCCATGCTCGAAAAAGACAGGATaGGACGGGCATTTCAGAGAGAGCCAAAGAGCTGAGTGCTGCACA +
Preference number: 1 (lower is better)
Translates to: SPRHKACEPCSKKTG*DGHFRESQRAECCT
Trigger: TGTGCAGCACTCAGCTCTTTGGCTCTCTCTGAAATGCCCGTCTCATCCTGTCTTTTTCGAGCATGGCTCACAGGCCTTGTGTCTGGGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp GAAGAAGAAAGCAGTCCGATATCCCTGTTGTATGTGGATAACAGTTaGAGGGGCTCTGGGGGCACCCAAGAGGAGCTGGTGCTTAAGACG +
Preference number: 1 (lower is better)
Translates to: EEESSPISLLYVDNS*RGSGGTQEELVLKT
Trigger: CGTCTTAAGCACCAGCTCCTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATATCGGACTGCTTTCTTCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp CCTTTGTGGGGTGGAAGCAGAATTTATCCTGGCGGCTCTGCTCTCTaGCTCTGCAGCAAGTGCTCTAATGAAGTGGTTCTCGCTAAGACC +
Preference number: 1 (lower is better)
Translates to: PLWGGSRIYPGGSAL*LCSKCSNEVVLAKT
Trigger: GGTCTTAGCGAGAACCACTTCATTAGAGCACTTGCTGCAGAGGCAGAGAGCAGAGCCGCCAGGATAAATTCTGCTTCCACCCCACAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp TCACTCCTCCCGGGGAAGAATCAGGCAGTGTCTTCTTGGCACTATTaGTGGAAACAAGCCTGCTCGTTCCACCCCTATCTCAGCCCTAAA +
Preference number: 1 (lower is better)
Translates to: SLLPGKNQAVSSWHY*WKQACSFHPYLSPK
Trigger: TTTAGGGCTGAGATAGGGGTGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTTCCCCGGGAGGAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp AGAACTAAGGATGTGACTGGACACTTCCTTCTTCCTCCTCCTGCATaGATGGGGTCTCGACCTCAGCTCTCCAGGGACATCAAGAGACCA +
Preference number: 1 (lower is better)
Translates to: RTKDVTGHFLLPPPA*MGSRPQLSRDIKRP
Trigger: TGGTCTCTTGATGTCCCTGGAGAGCTGAGGTCGAGACCCCATTCATGCAGGAGGAGGAAGAAGGAAGTGTCCAGTCACATCCTTAGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp GGAGTCAGTGCTTTGCCACTCCCTGGCATGTCTGTGGCATGTGTGTaGCTAGAGTCTGGGGTCTCAACTGAACATGAGTCATGTCTTCTT +
Preference number: 1 (lower is better)
Translates to: GVSALPLPGMSVACV*LESGVSTEHESCLL
Trigger: AAGAAGACATGACTCATGTTCAGTTGAGACCCCAGACTCTAGCCACACACATGCCACAGACATGCCAGGGAGTGGCAAAGCACTGACTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp TCAGCTCTCCAGGGACATCAAGAGACCAAGGTTCAGCTCAGCCAATaGACACATCAGTCTAAATCCCCATTTCAGCTCTCTATGGCAAAC +
Preference number: 1 (lower is better)
Translates to: SALQGHQETKVQLSQ*THQSKSPFQLSMAN
Trigger: GTTTGCCATAGAGAGCTGAAATGGGGATTTAGACTGATGTGTGCATTGGCTGAGCTGAACCTTGGTCTCTTGATGTCCCTGGAGAGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp AAGAATCAGGCAGTGTCTTCTTGGCACTATTGGTGGAAACAAGCCTaGTCGTTCCACCCCTATCTCAGCCCTAAAATAATTTCCAATGGC +
Preference number: 1 (lower is better)
Translates to: KNQAVSSWHYWWKQA*SFHPYLSPKIISNG
Trigger: GCCATTGGAAATTATTTTAGGGCTGAGATAGGGGTGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp TCAGCCAATGCACACATCAGTCTAAATCCCCATTTCAGCTCTCTATaGCAAACCCTTCCTCTCTCATCATGCAAACATTGCCTCACCCTA +
Preference number: 1 (lower is better)
Translates to: SANAHISLNPHFSSL*QTLPLSSCKHCLTL
Trigger: TAGGGTGAGGCAATGTTTGCATGATGAGAGAGGAAGGGTTTGCCATAGAGAGCTGAAATGGGGATTTAGACTGATGTGTGCATTGGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp CTCTGGCTTATGTCCCATGTCTCTTGTTACAGATTCTATTCTGGATaGCTAATTTCTCAGAGACAAAGGGCCCTGCTGTCTGGAGACAGT +
Preference number: 1 (lower is better)
Translates to: LWLMSHVSCYRFYSG*LISQRQRALLSGDS
Trigger: ACTGTCTCCAGACAGCAGGGCCCTTTGTCTCTGAGAAATTAGCCATCCAGAATAGAATCTGTAACAAGAGACATGGGACATAAGCCAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp ATTTTTATAGAACACTCTCTTTGCATGAGCTACACTGCAAAGTCCTaGCACTTCAGAGGCTCTTCCTCAATGCTGGCGATGGTGATGGCA +
Preference number: 1 (lower is better)
Translates to: IFIEHSLCMSYTAKS*HFRGSSSMLAMVMA
Trigger: TGCCATCACCATCGCCAGCATTGAGGAAGAGCCTCTGAAGTGTCAGGACTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp GCTGTAACAAACAGCAGTTACTGTTTTTCTCCTCGTGCAGAAAGCTaGCCTCTTGGCCCAGAGGCACGGAATATTAATTTTCAAATGGGC +
Preference number: 1 (lower is better)
Translates to: AVTNSSYCFSPRAES*PLGPEARNINFQMG
Trigger: GCCCATTTGAAAATTAATATTCCGTGCCTCTGGGCCAAGAGGTCAGCTTTCTGCACGAGGAGAAAAACAGTAACTGCTGTTTGTTACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp AATCCCCATTTCAGCTCTCTATGGCAAACCCTTCCTCTCTCATCATaGAAACATTGCCTCACCCTAGGATTTTTCCTGCTTAGGCTCTTT +
Preference number: 1 (lower is better)
Translates to: NPHFSSLWQTLPLSS*KHCLTLGFFLLRLF
Trigger: AAAGAGCCTAAGCAGGAAAAATCCTAGGGTGAGGCAATGTTTGCATGATGAGAGAGGAAGGGTTTGCCATAGAGAGCTGAAATGGGGATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp ATCCTAGCCTTAAACTCTGAACAAAAAGTGCACACATCCACTAATTaGTCGCAATCCATCTTGTCTCATGCATCTCTGCTGGGTCCCTTG +
Preference number: 1 (lower is better)
Translates to: ILALNSEQKVHTSTN*SQSILSHASLLGPL
Trigger: CAAGGGACCCAGCAGAGATGCATGAGACAAGATGGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAAGGCTAGGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 90 bp AGTTCTCTGGCTTATGTCCCATGTCTCTTGTTACAGATTCTATTCTaGATGGCTAATTTCTCAGAGACAAAGGGCCCTGCTGTCTGGAGA +
Preference number: 1 (lower is better)
Translates to: SSLAYVPCLLLQILF*MANFSETKGPAVWR
Trigger: TCTCCAGACAGCAGGGCCCTTTGTCTCTGAGAAATTAGCCATCCAGAATAGAATCTGTAACAAGAGACATGGGACATAAGCCAGAGAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp TCATGGGGCATGACAGCAAACACTAATGACACCAAATCCTATGTGTaGCATAGAAGGCAGGGCCATAATCCCCTTTATACAGGCTCTAAT +
Preference number: 1 (lower is better)
Translates to: SWGMTANTNDTKSYV*HRRQGHNPLYTGSN
Trigger: ATTAGAGCCTGTATAAAGGGGATTATGGCCCTGCCTTCTATGTCACACATAGGATTTGGTGTCATTAGTGTTTGCTGTCATGCCCCATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp AGCTGTCAAGATTTTTATAGAACACTCTCTTTGCATGAGCTACACTaGAAAGTCCTGACACTTCAGAGGCTCTTCCTCAATGCTGGCGAT +
Preference number: 1 (lower is better)
Translates to: SCQDFYRTLSLHELH*KVLTLQRLFLNAGD
Trigger: ATCGCCAGCATTGAGGAAGAGCCTCTGAAGTGTCAGGACTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATCTTGACAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp ACACGAAGTGCTGCAAAGAATTTTAACAAGACCTGTAGTGAAAAATaGTGGACACAGATTCTGTACCAGCCGGAAGAAGAAAGCAGTCCG +
Preference number: 1 (lower is better)
Translates to: TRSAAKNFNKTCSEK*WTQILYQPEEESSP
Trigger: CGGACTGCTTTCTTCTTCCGGCTGGTACAGAATCTGTGTCCATCATTTTTCACTACAGGTCTTGTTAAAATTCTTTGCAGCACTTCGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp AATGTGGCCCCAAATCTGTCTTCCCAAGGCATGGAATCATTTCTATaGACCGAATGGTTATCTAATTTTGCCTGCACTCATGTTAGATCC +
Preference number: 1 (lower is better)
Translates to: NVAPNLSSQGMESFL*TEWLSNFACTHVRS
Trigger: GGATCTAACATGAGTGCAGGCAAAATTAGATAACCATTCGGTTCATAGAAATGATTCCATGCCTTGGGAAGACAGATTTGGGGCCACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 90 bp CCATACCTTCCGTGGCCTTTACTTCTCCTAACAATGAGTCACCCTTaGTTTGCATTTCAATCAGGTTCAAAGACTCAAAGCTTACTTACA +
Preference number: 1 (lower is better)
Translates to: PYLPWPLLLLTMSHP*FAFQSGSKTQSLLT
Trigger: TGTAAGTAAGCTTTGAGTCTTTGAACCTGATTGAAATGCAAAGCAAGGGTGACTCATTGTTAGGAGAAGTAAAGGCCACGGAAGGTATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 90 bp TGGGTCAACCACTATTTAAAACCTTCAGACATAACCATAAGGTATTaGCTGGTTTGCAGGACAGCTCAGTCAGTGGGAAAAACCAATATC +
Preference number: 1 (lower is better)
Translates to: WVNHYLKPSDITIRY*LVCRTAQSVGKTNI
Trigger: GATATTGGTTTTTCCCACTGACTGAGCTGTCCTGCAAACCAGTCAATACCTTATGGTTATGTCTGAAGGTTTTAAATAGTGGTTGACCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp ATATCCCTGTTGTATGTGGATAACAGTTGCAGGGGCTCTGGGGGCACCCAAGAGCAGAACCCCCTGGGCTaGCCTCCTGTCTCGAGCCGT +
Preference number: 2 (lower is better)
Translates to: ISLLYVDNSCRGSGGTQEQNPLG*PPVSSR
Trigger: ACGGCTCGAGACAGGAGGCCAGCCCAGGGGGTTCTG...CTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp GGGTCACACTGGAGTCCTAGTGAGGAAGGGAGCTCAGGAGTCAGTGCTTTGCCAATAAGCAGAACCCCCTaGGCTGGCCTCCTGTCTCGA +
Preference number: 2 (lower is better)
Translates to: GSHWSPSEEGSSGVSALPISRTP*AGLLSR
Trigger: TCGAGACAGGAGGCCAGCCCAGGGGGTTCTGCTTAT...TGGCAAAGCACTGACTCCTGAGCTCCCTTCCTCACTAGGACTCCAGTGTGACCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 90 bp TCCAATGGCAGTAAGAGAAAGGGATGGAGAGGTGCTAGCTCCCTTTaGTGGAGAGCCACGGGGACACATAAGCAGAACCCCCTGGGCTGG +
Preference number: 2 (lower is better)
Translates to: SNGSKRKGWRGASSL*WRATGTHKQNPLGW
Trigger: CCAGCCCAGGGGGTTCTGCTTATGTGTCCCCGTGGCTCTCCACAAAAGGGAGCTAGCACCTCTCCATCCCTTTCTCTTACTGCCATTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 90 bp TCAGGACTCCGGGGTACAGGGTGGAGAGAAGACTGCAATGACGCTTaGGTCCTCTCAGTGCAGGGTCACACTGGAGTCCTAGTGAGGAAG +
Preference number: 2 (lower is better)
Translates to: SGLRGTGWREDCNDA*VLSVQGHTGVLVRK
Trigger: CTTCCTCACTAGGACTCCAGTGTGACCCTGCACTGAGAGGACCAAAGCGTCATTGCAGTCTTCTCTCCACCCTGTACCCCGGAGTCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 90 bp TCAGCATGGGCTTCATCTGTGCAGCCACGAGTGCACACCCCGCTGTaGAGCAAAAGACAGAAACAGAAGTGCAGCCTGACCCTGGGTTCC +
Preference number: 2 (lower is better)
Translates to: SAWASSVQPRVHTPL*SKRQKQKCSLTLGS
Trigger: GGAACCCAGGGTCAGGCTGCACTTCTGTTTCTGTCTTTTGCTCAACAGCGGGGTGTGCACTCGTGGCTGCACAGATGAAGCCCATGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 90 bp TCACACTGGAGTCCTAGTGAGGAAGGGAGCTCAGGAGTCAGTGCTTaGCCACTCCCTGGCATGTCTGTGGCATGTGTGTGGCTAGAGTCT +
Preference number: 2 (lower is better)
Translates to: SHWSPSEEGSSGVSA*PLPGMSVACVWLES
Trigger: AGACTCTAGCCACACACATGCCACAGACATGCCAGGGAGTGGCAAAGCACTGACTCCTGAGCTCCCTTCCTCACTAGGACTCCAGTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR TCA 90 bp AGCTCTCCAGGGACATCAAGAGACCAAGGTTCAGCTCAGCCAATGCACACATCAGATGCAGGCTGTGTATaGGTGGGTGTGGGGGTGTCC +
Preference number: 2 (lower is better)
Translates to: SSPGTSRDQGSAQPMHTSDAGCV*VGVGVS
Trigger: GGACACCCCCACACCCACTCATACACAGCCTGCATC...TGATGTGTGCATTGGCTGAGCTGAACCTTGGTCTCTTGATGTCCCTGGAGAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp GGGTCACACTGGAGTCCTAGTGAGGAAGGGAGCTCAGGAGTCAGTGCTTTGCCATCTGTGGCATGTGTGTaGCTAGAGTCTGGGGTCTCA +
Preference number: 2 (lower is better)
Translates to: GSHWSPSEEGSSGVSALPSVACV*LESGVS
Trigger: TGAGACCCCAGACTCTAGCCACACACATGCCACAGA...TGGCAAAGCACTGACTCCTGAGCTCCCTTCCTCACTAGGACTCCAGTGTGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp ATATCCCTGTTGTATGTGGATAACAGTTGCAGGGGCTCTGGGGGCACCCAAGAGGCTAGCTCCCTTTTGTaGAGAGCCACGGGGACACAT +
Preference number: 2 (lower is better)
Translates to: ISLLYVDNSCRGSGGTQEASSLL*RATGTH
Trigger: ATGTGTCCCCGTGGCTCTCCACAAAAGGGAGCTAGC...CTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 90 bp TTCAGAGGAGTCACTCCTCCCGGGGAAGAATCAGGCAGTGTCTTCTaGGCACTATTGGTGGAAACAAGCCTGCTCGTTCCACCCCTATCT +
Preference number: 2 (lower is better)
Translates to: FRGVTPPGEESGSVF*ALLVETSLLVPPLS
Trigger: AGATAGGGGTGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTTCCCCGGGAGGAGTGACTCCTCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR TCA 90 bp ATATCCCTGTTGTATGTGGATAACAGTTGCAGGGGCTCTGGGGGCACCCAAGAGTGGGAGAGAAGAGCCTaGTGCCTTCAGGAATTGCAC +
Preference number: 2 (lower is better)
Translates to: ISLLYVDNSCRGSGGTQEWERRA*CLQELH
Trigger: GTGCAATTCCTGAAGGCATCAGGCTCTTCTCTCCCA...CTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR TCA 90 bp GGCATTTCAGAGAGAGCCAAAGAGCTGAGTGCTGCACAGTCAGGCCGCTGCAGTCCATTTCTTTTCCCCTaGTGGGCAAATCTAATAGTG +
Preference number: 2 (lower is better)
Translates to: GISERAKELSAAQSGRCSPFLFP*WANLIV
Trigger: CACTATTAGATTTGCCCATCAGGGGAAAAGAAATGG...ACTGCAGCGGCCTGACTGTGCAGCACTCAGCTCTTTGGCTCTCTCTGAAATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp CATTTCTCCATGGGGGCTTGCGCACACACTTCACAAGGCTCAGAGGCACTTCTATCTTCTTGGCACTATTaGTGGAAACAAGCCTGCTCG +
Preference number: 2 (lower is better)
Translates to: HFSMGACAHTSQGSEALLSSWHY*WKQACS
Trigger: CGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGA...TAGAAGTGCCTCTGAGCCTTGTGAAGTGTGTGCGCAAGCCCCCATGGAGAAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp TCATTATCCTGGACAGGGCTTTCCTTCTGTGTGGCAGGACCAGAGAGAGGAAGCAATACTATTTACAAATaGGGAGGGGAGGCCAGGGAG +
Preference number: 2 (lower is better)
Translates to: SLSWTGLSFCVAGPERGSNTIYK*GGEARE
Trigger: CTCCCTGGCCTCCCCTCCCCATTTGTAAATAGTATT...GCTTCCTCTCTCTGGTCCTGCCACACAGAAGGAAAGCCCTGTCCAGGATAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp GGCATTTCAGAGAGAGCCAAAGAGCTGAGTGCTGCACAGTCAGGCCGCTGCAGTAAAATGCGGTCGTCCTaGATTTCAGGCTGTAACAAA +
Preference number: 2 (lower is better)
Translates to: GISERAKELSAAQSGRCSKMRSS*ISGCNK
Trigger: TTTGTTACAGCCTGAAATCCAGGACGACCGCATTTT...ACTGCAGCGGCCTGACTGTGCAGCACTCAGCTCTTTGGCTCTCTCTGAAATGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR TCA 90 bp GCCATCCTGGATTCAGATACAAGGCACATCAGAGGCATGAATAAGTACTTAGGACTCCACTCTCTCCTGTaGCTGCCTTTGTGGGGTGGA +
Preference number: 2 (lower is better)
Translates to: AILDSDTRHIRGMNKYLGLHSLL*LPLWGG
Trigger: TCCACCCCACAAAGGCAGTCACAGGAGAGAGTGGAG...TCCTAAGTACTTATTCATGCCTCTGATGTGCCTTGTATCTGAATCCAGGATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR GCA 90 bp AGCAAGGGTGTCAGCAACGCTCATTATCCTGGACAGGGCTTTCCTTCTGTGTGGGATGCCTTCAGGAATTaGACTTGCGGCCTGAAAATA +
Preference number: 2 (lower is better)
Translates to: SKGVSNAHYPGQGFPSVWDAFRN*TCGLKI
Trigger: TATTTTCAGGCCGCAAGTGCAATTCCTGAAGGCATC...CCACACAGAAGGAAAGCCCTGTCCAGGATAATGAGCGTTGCTGACACCCTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp AGCTCTCCAGGGACATCAAGAGACCAAGGTTCAGCTCAGCCAATGCACACATCAAGTAAGAGAAAGGGATaGAGAGGTGCTAGCTCCCTT +
Preference number: 2 (lower is better)
Translates to: SSPGTSRDQGSAQPMHTSSKRKG*RGASSL
Trigger: AAGGGAGCTAGCACCTCTCCATCCCTTTCTCTTACT...TGATGTGTGCATTGGCTGAGCTGAACCTTGGTCTCTTGATGTCCCTGGAGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR GCA 90 bp AGCTCTCCAGGGACATCAAGAGACCAAGGTTCAGCTCAGCCAATGCACACATCATTCAGGAATTGCACTTaGGGCCTGAAAATATGGTGG +
Preference number: 2 (lower is better)
Translates to: SSPGTSRDQGSAQPMHTSFRNCT*GLKIWW
Trigger: CCACCATATTTTCAGGCCGCAAGTGCAATTCCTGAA...TGATGTGTGCATTGGCTGAGCTGAACCTTGGTCTCTTGATGTCCCTGGAGAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR GCA 90 bp CTAGCCTTAAACTCTGAACAAAAAGTGCACACATCCACTAATTGCTCGCAATCCCTGAGCTTGGCCATCTaGCAGCTGGGAATCCACCAC +
Preference number: 2 (lower is better)
Translates to: LALNSEQKVHTSTNCSQSLSLAI*QLGIHH
Trigger: GTGGTGGATTCCCAGCTGGCAGATGGCCAAGCTCAG...GGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAAGGCTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp CTCAGCCAATGCACACATCAGTCTAAATCCCCATTTCAGCTCTCTATGGCAAACGGCTTTCCTTCTGTGTaGCAGGACCAGAGAGAGGAA +
Preference number: 2 (lower is better)
Translates to: LSQCTHQSKSPFQLSMANGFPSV*QDQREE
Trigger: TTCCTCTCTCTGGTCCTGCCACACAGAAGGAAAGCC...GTTTGCCATAGAGAGCTGAAATGGGGATTTAGACTGATGTGTGCATTGGCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 90 bp CCCAAGGCATGGAATCATTTCTATGAACCGAATGGTTATCTAATTTaGCCTGCACTCATGTTAGATCCCACCCCCACCTCCTGCCAGGAA +
Preference number: 2 (lower is better)
Translates to: PKAWNHFYEPNGYLI*PALMLDPTPTSCQE
Trigger: TTCCTGGCAGGAGGTGGGGGTGGGATCTAACATGAGTGCAGGCAAAATTAGATAACCATTCGGTTCATAGAAATGATTCCATGCCTTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp GCCATCCTGGATTCAGATACAAGGCACATCAGAGGCATGAATAAGTACTTAGGATGCTTTGCCACTCCCTaGCATGTCTGTGGCATGTGT +
Preference number: 2 (lower is better)
Translates to: AILDSDTRHIRGMNKYLGCFATP*HVCGMC
Trigger: ACACATGCCACAGACATGCCAGGGAGTGGCAAAGCA...TCCTAAGTACTTATTCATGCCTCTGATGTGCCTTGTATCTGAATCCAGGATGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 90 bp TCTGAACAAAAAGTGCACACATCCACTAATTGCTCGCAATCCATCTaGTCTCATGCATCTCTGCTGGGTCCCTTGACTCTACTGAGCATC +
Preference number: 2 (lower is better)
Translates to: SEQKVHTSTNCSQSI*SHASLLGPLTLLSI
Trigger: GATGCTCAGTAGAGTCAAGGGACCCAGCAGAGATGCATGAGACAAGATGGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR GCA 90 bp CTAGCCTTAAACTCTGAACAAAAAGTGCACACATCCACTAATTGCTCGCAATCCAGAGACAAAGGGCCCTaGTGTCTGGAGACAGTGACA +
Preference number: 2 (lower is better)
Translates to: LALNSEQKVHTSTNCSQSRDKGP*CLETVT
Trigger: TGTCACTGTCTCCAGACAGCAGGGCCCTTTGTCTCT...GGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAAGGCTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR GCA 90 bp CATTTCTCCATGGGGGCTTGCGCACACACTTCACAAGGCTCAGAGGCACTTCTAACTCTGAACAAAAAGTaGACACATCCACTAATTGCT +
Preference number: 2 (lower is better)
Translates to: HFSMGACAHTSQGSEALLTLNKK*THPLIA
Trigger: AGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGT...TAGAAGTGCCTCTGAGCCTTGTGAAGTGTGTGCGCAAGCCCCCATGGAGAAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR GCA 90 bp ATATCCCTGTTGTATGTGGATAACAGTTGCAGGGGCTCTGGGGGCACCCAAGAGTTATCTAATTTTGCCTaGACTCATGTTAGATCCCAC +
Preference number: 2 (lower is better)
Translates to: ISLLYVDNSCRGSGGTQELSNFA*THVRSH
Trigger: GTGGGATCTAACATGAGTGCAGGCAAAATTAGATAA...CTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp CTAGCCTTAAACTCTGAACAAAAAGTGCACACATCCACTAATTGCTCGCAATCCAGAGAGAGGAAGCCATaGAGCCTAGAGCCTGAGTCA +
Preference number: 2 (lower is better)
Translates to: LALNSEQKVHTSTNCSQSRERKP*SLEPES
Trigger: TGACTCAGGCTCTAGGCTCCATGGCTTCCTCTCTCT...GGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAAGGCTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR TCA 90 bp TTTCAAAATTTCAGTCCAAGGTGTTGGGTCAACCACTATTTAAAACCTTCAGACCTTCCTCCTCCTGCATaGATGGGGTCTCGACCTCAG +
Preference number: 2 (lower is better)
Translates to: FQNFSPRCWVNHYLKPSDLPPPA*MGSRPQ
Trigger: CTGAGGTCGAGACCCCATTCATGCAGGAGGAGGAAG...GTCTGAAGGTTTTAAATAGTGGTTGACCCAACACCTTGGACTGAAATTTTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR GCA 90 bp TCAGCTGTCAAGATTTTTATAGAACACTCTCTTTGCATGAGCTACACTGCAAAGGAGCTCAGGAGTCAGTaGTTTGCCACTCCCTGGCAT +
Preference number: 2 (lower is better)
Translates to: SAVKIFIEHSLCMSYTAKELRSQ*FATPWH
Trigger: ATGCCAGGGAGTGGCAAAGCACTGACTCCTGAGCTC...CTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATCTTGACAGCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp TCAGCTGTCAAGATTTTTATAGAACACTCTCTTTGCATGAGCTACACTGCAAAGCTCCGGGGTACAGGGTaGAGAGAAGACTGCAATGAC +
Preference number: 2 (lower is better)
Translates to: SAVKIFIEHSLCMSYTAKLRGTG*REDCND
Trigger: GTCATTGCAGTCTTCTCTCCACCCTGTACCCCGGAG...CTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATCTTGACAGCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp TCAAACACTTGGCTCAGCGGAAACAAATTAGCAACTAAAAGCTTTTTCTCCCATGTTAAGGCAGGTGGATaGAGGGCAGAAGGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: SNTWLSGNKLATKSFFSHVKAGG*RAEGKE
Trigger: CTCCTTCCCTTCTGCCCTCCATCCACCTGCCTTAAC...ATGGGAGAAAAAGCTTTTAGTTGCTAATTTGTTTCCGCTGAGCCAAGTGTTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR GCA 90 bp TCAGCTGTCAAGATTTTTATAGAACACTCTCTTTGCATGAGCTACACTGCAAAGCCATCAGGGGACACATaGCTAAGTGGATTCCGCAAC +
Preference number: 2 (lower is better)
Translates to: SAVKIFIEHSLCMSYTAKPSGDT*LSGFRN
Trigger: GTTGCGGAATCCACTTAGGCATGTGTCCCCTGATGG...CTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATCTTGACAGCTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR GCA 90 bp AAAGAGAGCAAAATCAGTTGCCATCCTAGGCAAGGAGAGTTCACTGATGCCTGTTCTCTTTGGATGAGCTaGAAAGTATCCAAACCTGAC +
Preference number: 2 (lower is better)
Translates to: KESKISCHPRQGEFTDACSLWMS*KVSKPD
Trigger: GTCAGGTTTGGATACTTTGCAGCTCATCCAAAGAGA...ACAGGCATCAGTGAACTCTCCTTGCCTAGGATGGCAACTGATTTTGCTCTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp CTAGCCTTAAACTCTGAACAAAAAGTGCACACATCCACTAATTGCTCGCAATCCTCTTGGCACTATTGGTaGAAACAAGCCTGCTCGTTC +
Preference number: 2 (lower is better)
Translates to: LALNSEQKVHTSTNCSQSSWHYW*KQACSF
Trigger: GAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGA...GGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAAGGCTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp AGTCCAAGGTGTTGGGTCAACCACTATTTAAAACCTTCAGACATAACCATAAGGGTGTATGAGTGGGTGTaGGGGTGTCCTACAAACAAC +
Preference number: 2 (lower is better)
Translates to: SPRCWVNHYLKPSDITIRVYEWV*GCPTNN
Trigger: GTTGTTTGTAGGACACCCCCACACCCACTCATACAC...CCTTATGGTTATGTCTGAAGGTTTTAAATAGTGGTTGACCCAACACCTTGGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp AGTCCAAGGTGTTGGGTCAACCACTATTTAAAACCTTCAGACATAACCATAAGGCAGGCAGTGTCTTCTTaGCACTATTGGTGGAAACAA +
Preference number: 2 (lower is better)
Translates to: SPRCWVNHYLKPSDITIRQAVSS*HYWWKQ
Trigger: TTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTG...CCTTATGGTTATGTCTGAAGGTTTTAAATAGTGGTTGACCCAACACCTTGGACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CCA 90 bp CTCAGCCAATGCACACATCAGTCTAAATCCCCATTTCAGCTCTCTATGGCAAACTTAGTTATGTCTCTTTaGATGAGCTGCAAAGTATCC +
Preference number: 2 (lower is better)
Translates to: LSQCTHQSKSPFQLSMANLVMSL*MSCKVS
Trigger: GGATACTTTGCAGCTCATCCAAAGAGACATAACTAA...GTTTGCCATAGAGAGCTGAAATGGGGATTTAGACTGATGTGTGCATTGGCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 90 bp CCACTATTTAAAACCTTCAGACATAACCATAAGGTATTGACTGGTTaGCAGGACAGCTCAGTCAGTGGGAAAAACCAATATCCTAGCCTT +
Preference number: 2 (lower is better)
Translates to: PLFKTFRHNHKVLTG*QDSSVSGKNQYPSL
Trigger: AAGGCTAGGATATTGGTTTTTCCCACTGACTGAGCTGTCCTGCAAACCAGTCAATACCTTATGGTTATGTCTGAAGGTTTTAAATAGTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 90 bp TTGGGTCAACCACTATTTAAAACCTTCAGACATAACCATAAGGTATaGACTGGTTTGCAGGACAGCTCAGTCAGTGGGAAAAACCAATAT +
Preference number: 2 (lower is better)
Translates to: LGQPLFKTFRHNHKV*TGLQDSSVSGKNQY
Trigger: ATATTGGTTTTTCCCACTGACTGAGCTGTCCTGCAAACCAGTCAATACCTTATGGTTATGTCTGAAGGTTTTAAATAGTGGTTGACCCAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp GGTGCACTGAGTGTGGGTGTTCCCACAGACTCAGCATaGGCTTCATCTGTGCAGCCACGAGTGCACACCCCG +
Preference number: 3 (lower is better)
Translates to: GALSVGVPTDSA*ASSVQPRVHTP
Trigger: CGGGGTGTGCACTCGTGGCTGCACAGATGAAGCCCATGCTGAGTCTGTGGGAACACCCACACTCAGTGCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp TGTAAGGGAGGGTGGCAGCCCCTTAAACAGGAGGGCTaGCAAGATCACAGTGGCCCTGAGCTTGGCCATCTG +
Preference number: 3 (lower is better)
Translates to: CKGGWQPLKQEG*QDHSGPELGHL
Trigger: CAGATGGCCAAGCTCAGGGCCACTGTGATCTTGGCAGCCCTCCTGTTTAAGGGGCTGCCACCCTCCCTTACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp AGGATGAGACGGGCATTTCAGAGAGAGCCAAAGAGCTaGGTGCTGCACAGTCAGGCCGCTGCAGTGGGTAGC +
Preference number: 3 (lower is better)
Translates to: RMRRAFQREPKS*VLHSQAAAVGS
Trigger: GCTACCCACTGCAGCGGCCTGACTGTGCAGCACTCAGCTCTTTGGCTCTCTCTGAAATGCCCGTCTCATCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp GTCCTAGTGAGGAAGGGAGCTCAGGAGTCAGTGCTTTaGCACTCCCTGGCATGTCTGTGGCATGTGTGTGGC +
Preference number: 3 (lower is better)
Translates to: VLVRKGAQESVL*HSLACLWHVCG
Trigger: GCCACACACATGCCACAGACATGCCAGGGAGTGGCAAAGCACTGACTCCTGAGCTCCCTTCCTCACTAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp TATCCTGGCGGCTCTGCTCTCTGCCTCTGCAGCAAGTaGTCTAATGAAGTGGTTCTCGCTAAGACCCCCGCC +
Preference number: 3 (lower is better)
Translates to: YPGGSALCLCSK*SNEVVLAKTPA
Trigger: GGCGGGGGTCTTAGCGAGAACCACTTCATTAGAGCACTTGCTGCAGAGGCAGAGAGCAGAGCCGCCAGGATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp GGAAGGGAGCTCAGGAGTCAGTGCTTTGCCACTCCCTaGCATGTCTGTGGCATGTGTGTGGCTAGAGTCTGG +
Preference number: 3 (lower is better)
Translates to: GRELRSQCFATP*HVCGMCVARVW
Trigger: CCAGACTCTAGCCACACACATGCCACAGACATGCCAGGGAGTGGCAAAGCACTGACTCCTGAGCTCCCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp CAATCAGGACTCCGGGGTACAGGGTGGAGAGAAGACTaGAATGACGCTTTGGTCCTCTCAGTGCAGGGTCAC +
Preference number: 3 (lower is better)
Translates to: QSGLRGTGWRED*NDALVLSVQGH
Trigger: GTGACCCTGCACTGAGAGGACCAAAGCGTCATTGCAGTCTTCTCTCCACCCTGTACCCCGGAGTCCTGATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp AGCAGTCCGATATCCCTGTTGTATGTGGATAACAGTTaGAGGGGCTCTGGGGGCACCCAAGAGGAGCTGGTG +
Preference number: 3 (lower is better)
Translates to: SSPISLLYVDNS*RGSGGTQEELV
Trigger: CACCAGCTCCTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATATCGGACTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp GACGGGCATTTCAGAGAGAGCCAAAGAGCTGAGTGCTaGACAGTCAGGCCGCTGCAGTGGGTAGCTCTGTTT +
Preference number: 3 (lower is better)
Translates to: DGHFRESQRAEC*TVRPLQWVALF
Trigger: AAACAGAGCTACCCACTGCAGCGGCCTGACTGTGCAGCACTCAGCTCTTTGGCTCTCTCTGAAATGCCCGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp TATAGCCCTGGCTATACACCACCCTGTAAGGGAGGGTaGCAGCCCCTTAAACAGGAGGGCTGCCAAGATCAC +
Preference number: 3 (lower is better)
Translates to: YSPGYTPPCKGG*QPLKQEGCQDH
Trigger: GTGATCTTGGCAGCCCTCCTGTTTAAGGGGCTGCCACCCTCCCTTACAGGGTGGTGTATAGCCAGGGCTATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp CTCCTCAGGTGGGGACAAGATGTCTCCATTTCTCCATaGGGGCTTGCGCACACACTTCACAAGGCTCAGAGG +
Preference number: 3 (lower is better)
Translates to: LLRWGQDVSISP*GLAHTLHKAQR
Trigger: CCTCTGAGCCTTGTGAAGTGTGTGCGCAAGCCCCCATGGAGAAATGGAGACATCTTGTCCCCACCTGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp GTGACTGCCTTTGTGGGGTGGAAGCAGAATTTATCCTaGCGGCTCTGCTCTCTGCCTCTGCAGCAAGTGCTC +
Preference number: 3 (lower is better)
Translates to: VTAFVGWKQNLS*RLCSLPLQQVL
Trigger: GAGCACTTGCTGCAGAGGCAGAGAGCAGAGCCGCCAGGATAAATTCTGCTTCCACCCCACAAAGGCAGTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp GATGTGACTGGACACTTCCTTCTTCCTCCTCCTGCATaGATGGGGTCTCGACCTCAGCTCTCCAGGGACATC +
Preference number: 3 (lower is better)
Translates to: DVTGHFLLPPPA*MGSRPQLSRDI
Trigger: GATGTCCCTGGAGAGCTGAGGTCGAGACCCCATTCATGCAGGAGGAGGAAGAAGGAAGTGTCCAGTCACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp GAGCCTGGGAGAGAAGAGCCTGATGCCTTCAGGAATTaGACTTGCGGCCTGAAAATATGGTGGGAGCCCCAT +
Preference number: 3 (lower is better)
Translates to: EPGREEPDAFRN*TCGLKIWWEPH
Trigger: ATGGGGCTCCCACCATATTTTCAGGCCGCAAGTGCAATTCCTGAAGGCATCAGGCTCTTCTCTCCCAGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp TGTCCTGTGGAGATGCAGGCTGTGTATGAGTGGGTGTaGGGGTGTCCTACAAACAACACAGTGGGCAGGAGA +
Preference number: 3 (lower is better)
Translates to: CPVEMQAVYEWV*GCPTNNTVGRR
Trigger: TCTCCTGCCCACTGTGTTGTTTGTAGGACACCCCCACACCCACTCATACACAGCCTGCATCTCCACAGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp CTCTCTCCACTCTCTCCTGTGACTGCCTTTGTGGGGTaGAAGCAGAATTTATCCTGGCGGCTCTGCTCTCTG +
Preference number: 3 (lower is better)
Translates to: LSPLSPVTAFVG*KQNLSWRLCSL
Trigger: CAGAGAGCAGAGCCGCCAGGATAAATTCTGCTTCCACCCCACAAAGGCAGTCACAGGAGAGAGTGGAGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp CAAAGAGCTGAGTGCTGCACAGTCAGGCCGCTGCAGTaGGTAGCTCTGTTTCTGCCTAGAGAGGCAAAGACA +
Preference number: 3 (lower is better)
Translates to: QRAECCTVRPLQ*VALFLPREAKT
Trigger: TGTCTTTGCCTCTCTAGGCAGAAACAGAGCTACCCACTGCAGCGGCCTGACTGTGCAGCACTCAGCTCTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp AAGAGCCTGATGCCTTCAGGAATTGCACTTGCGGCCTaGAAATATGGTGGGAGCCCCATCTGCCTCTGCAGA +
Preference number: 3 (lower is better)
Translates to: KSLMPSGIALAA*KYGGSPICLCR
Trigger: TCTGCAGAGGCAGATGGGGCTCCCACCATATTTTCAGGCCGCAAGTGCAATTCCTGAAGGCATCAGGCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp GTGGGGACAAGATGTCTCCATTTCTCCATGGGGGCTTaGGCACACACTTCACAAGGCTCAGAGGCACTTCTA +
Preference number: 3 (lower is better)
Translates to: VGTRCLHFSMGA*AHTSQGSEALL
Trigger: TAGAAGTGCCTCTGAGCCTTGTGAAGTGTGTGCGCAAGCCCCCATGGAGAAATGGAGACATCTTGTCCCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp CCGGGGAAGAATCAGGCAGTGTCTTCTTGGCACTATTaGTGGAAACAAGCCTGCTCGTTCCACCCCTATCTC +
Preference number: 3 (lower is better)
Translates to: PGKNQAVSSWHY*WKQACSFHPYL
Trigger: GAGATAGGGGTGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTTCCCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp TCACTCCTCCCGGGGAAGAATCAGGCAGTGTCTTCTTaGCACTATTGGTGGAAACAAGCCTGCTCGTTCCAC +
Preference number: 3 (lower is better)
Translates to: SLLPGKNQAVSS*HYWWKQACSFH
Trigger: GTGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTTCCCCGGGAGGAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp GCCTTCAGGAATTGCACTTGCGGCCTGAAAATATGGTaGGAGCCCCATCTGCCTCTGCAGACATCCAATCAG +
Preference number: 3 (lower is better)
Translates to: AFRNCTCGLKIW*EPHLPLQTSNQ
Trigger: CTGATTGGATGTCTGCAGAGGCAGATGGGGCTCCCACCATATTTTCAGGCCGCAAGTGCAATTCCTGAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp TTCCTTCTGTGTGGCAGGACCAGAGAGAGGAAGCCATaGAGCCTAGAGCCTGAGTCAGAAGACAGTATCCAC +
Preference number: 3 (lower is better)
Translates to: FLLCGRTRERKP*SLEPESEDSIH
Trigger: GTGGATACTGTCTTCTGACTCAGGCTCTAGGCTCCATGGCTTCCTCTCTCTGGTCCTGCCACACAGAAGGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp AACGCTCATTATCCTGGACAGGGCTTTCCTTCTGTGTaGCAGGACCAGAGAGAGGAAGCCATGGAGCCTAGA +
Preference number: 3 (lower is better)
Translates to: NAHYPGQGFPSV*QDQREEAMEPR
Trigger: TCTAGGCTCCATGGCTTCCTCTCTCTGGTCCTGCCACACAGAAGGAAAGCCCTGTCCAGGATAATGAGCGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp CGGAAGAAGAAAGCAGTCCGATATCCCTGTTGTATGTaGATAACAGTTGCAGGGGCTCTGGGGGCACCCAAG +
Preference number: 3 (lower is better)
Translates to: RKKKAVRYPCCM*ITVAGALGAPK
Trigger: CTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATATCGGACTGCTTTCTTCTTCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp CACAAGGCCTGTGAGCCATGCTCGAAAAAGACAGGATaGGACGGGCATTTCAGAGAGAGCCAAAGAGCTGAG +
Preference number: 3 (lower is better)
Translates to: HKACEPCSKKTG*DGHFRESQRAE
Trigger: CTCAGCTCTTTGGCTCTCTCTGAAATGCCCGTCTCATCCTGTCTTTTTCGAGCATGGCTCACAGGCCTTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp GGTGGAAGCAGAATTTATCCTGGCGGCTCTGCTCTCTaGCTCTGCAGCAAGTGCTCTAATGAAGTGGTTCTC +
Preference number: 3 (lower is better)
Translates to: GGSRIYPGGSAL*LCSKCSNEVVL
Trigger: GAGAACCACTTCATTAGAGCACTTGCTGCAGAGGCAGAGAGCAGAGCCGCCAGGATAAATTCTGCTTCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp GGGAAGAATCAGGCAGTGTCTTCTTGGCACTATTGGTaGAAACAAGCCTGCTCGTTCCACCCCTATCTCAGC +
Preference number: 3 (lower is better)
Translates to: GKNQAVSSWHYW*KQACSFHPYLS
Trigger: GCTGAGATAGGGGTGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp TGTTGGCAAGAATCAGGCAGATGTCCACTCCTCAGGTaGGGACAAGATGTCTCCATTTCTCCATGGGGGCTT +
Preference number: 3 (lower is better)
Translates to: CWQESGRCPLLR*GQDVSISPWGL
Trigger: AAGCCCCCATGGAGAAATGGAGACATCTTGTCCCCACCTGAGGAGTGGACATCTGCCTGATTCTTGCCAACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp AGCAAGGGTGTCAGCAACGCTCATTATCCTGGACAGGGCTTTCCTTCTGTGTGGGTCTTCTTGGCACTATaGGTGGAAACAAGCCTGCTC +
Preference number: 3 (lower is better)
Translates to: SKGVSNAHYPGQGFPSVWVFLAL*VETSLL
Trigger: GAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGAC...CCACACAGAAGGAAAGCCCTGTCCAGGATAATGAGCGTTGCTGACACCCTTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp ACAGAGCTATTGTCCTGTGGAGATGCAGGCTGTGTATaGGTGGGTGTGGGGGTGTCCTACAAACAACACAGT +
Preference number: 3 (lower is better)
Translates to: TELLSCGDAGCV*VGVGVSYKQHS
Trigger: ACTGTGTTGTTTGTAGGACACCCCCACACCCACTCATACACAGCCTGCATCTCCACAGGACAATAGCTCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp CAGGACCAGAGAGAGGAAGCCATGGAGCCTAGAGCCTaGGTCAGAAGACAGTATCCACCATTCCCATGTATT +
Preference number: 3 (lower is better)
Translates to: QDQREEAMEPRA*VRRQYPPFPCI
Trigger: AATACATGGGAATGGTGGATACTGTCTTCTGACTCAGGCTCTAGGCTCCATGGCTTCCTCTCTCTGGTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp AGCAGAATTTATCCTGGCGGCTCTGCTCTCTGCCTCTaGAGCAAGTGCTCTAATGAAGTGGTTCTCGCTAAG +
Preference number: 3 (lower is better)
Translates to: SRIYPGGSALCL*SKCSNEVVLAK
Trigger: CTTAGCGAGAACCACTTCATTAGAGCACTTGCTGCAGAGGCAGAGAGCAGAGCCGCCAGGATAAATTCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp TCAAGTACAAAGACTAGGGTCCTAGATTCCGGGGACTCTCCTGTTCCAAAGGCCTCAGGCAGTGTCTTCTaGGCACTATTGGTGGAAACA +
Preference number: 3 (lower is better)
Translates to: SSTKTRVLDSGDSPVPKASGSVF*ALLVET
Trigger: TGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGA...GGCCTTTGGAACAGGAGAGTCCCCGGAATCTAGGACCCTAGTCTTTGTACTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp TGGCAAACCCTTCCTCTCTCATCATGCAAACATTGCCTCACCCTAGGATTTTTCAGGGAGACAGAGCTATaGTCCTGTGGAGATGCAGGC +
Preference number: 3 (lower is better)
Translates to: WQTLPLSSCKHCLTLGFFRETEL*SCGDAG
Trigger: GCCTGCATCTCCACAGGACAATAGCTCTGTCTCCCT...GAAAAATCCTAGGGTGAGGCAATGTTTGCATGATGAGAGAGGAAGGGTTTGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp ATATCCCTGTTGTATGTGGATAACAGTTGCAGGGGCTCTGGGGGCACCCAAGAGCCTTTAAAGGGCTGTTaGAGTTCTCTGGCTTATGTC +
Preference number: 3 (lower is better)
Translates to: ISLLYVDNSCRGSGGTQEPLKGC*SSLAYV
Trigger: GACATAAGCCAGAGAACTCAAACAGCCCTTTAAAGG...CTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp GAACACTCTCTTTGCATGAGCTACACTGCAAAGTCCTaGCACTTCAGAGGCTCTTCCTCAATGCTGGCGATG +
Preference number: 3 (lower is better)
Translates to: EHSLCMSYTAKS*HFRGSSSMLAM
Trigger: CATCGCCAGCATTGAGGAAGAGCCTCTGAAGTGTCAGGACTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp TCAGCTGTCAAGATTTTTATAGAACACTCTCTTTGCATGAGCTACACTGCAAAGACAGTGGCCCTGAGCTaGGCCATCTGCCAGCTGGGA +
Preference number: 3 (lower is better)
Translates to: SAVKIFIEHSLCMSYTAKTVALS*AICQLG
Trigger: TCCCAGCTGGCAGATGGCCAAGCTCAGGGCCACTGT...CTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATCTTGACAGCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp CTCCTGTTCCAAAGGCCAACAGAAGACTTTGCTGGTTaGAAGGGGAAATCTTTTCACTATGGCCAGCTGGGA +
Preference number: 3 (lower is better)
Translates to: LLFQRPTEDFAG*KGKSFHYGQLG
Trigger: TCCCAGCTGGCCATAGTGAAAAGATTTCCCCTTTCAACCAGCAAAGTCTTCTGTTGGCCTTTGGAACAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp CAGGGACATCAAGAGACCAAGGTTCAGCTCAGCCAATaGACACATCAGTCTAAATCCCCATTTCAGCTCTCT +
Preference number: 3 (lower is better)
Translates to: QGHQETKVQLSQ*THQSKSPFQLS
Trigger: AGAGAGCTGAAATGGGGATTTAGACTGATGTGTGCATTGGCTGAGCTGAACCTTGGTCTCTTGATGTCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp CATTTCTCCATGGGGGCTTGCGCACACACTTCACAAGGCTCAGAGGCACTTCTATTGTTCTCTACATCTTaGCAAGACATCTCCATCACT +
Preference number: 3 (lower is better)
Translates to: HFSMGACAHTSQGSEALLLFSTS*QDISIT
Trigger: AGTGATGGAGATGTCTTGCAAAGATGTAGAGAACAA...TAGAAGTGCCTCTGAGCCTTGTGAAGTGTGTGCGCAAGCCCCCATGGAGAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp AGTCCAAGGTGTTGGGTCAACCACTATTTAAAACCTTCAGACATAACCATAAGGTCAGGAGTCAGTGCTTaGCCACTCCCTGGCATGTCT +
Preference number: 3 (lower is better)
Translates to: SPRCWVNHYLKPSDITIRSGVSA*PLPGMS
Trigger: AGACATGCCAGGGAGTGGCAAAGCACTGACTCCTGA...CCTTATGGTTATGTCTGAAGGTTTTAAATAGTGGTTGACCCAACACCTTGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp ACCCCCAACTTCAACCTAATACTAGCTAGTAATATATaGCACCTTCCAGGGACAGGGGATCTCTGCCATCCT +
Preference number: 3 (lower is better)
Translates to: TPNFNLILASNI*HLPGTGDLCHP
Trigger: AGGATGGCAGAGATCCCCTGTCCCTGGAAGGTGTCATATATTACTAGCTAGTATTAGGTTGAAGTTGGGGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp GCAGTGTCTTCTTGGCACTATTGGTGGAAACAAGCCTaGTCGTTCCACCCCTATCTCAGCCCTAAAATAATT +
Preference number: 3 (lower is better)
Translates to: AVSSWHYWWKQA*SFHPYLSPKII
Trigger: AATTATTTTAGGGCTGAGATAGGGGTGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp CCACCATTCCCATGTATTCATCCATCAGGGGACACATaGCTAAGTGGATTCCGCAACAGCGATGATGTTATA +
Preference number: 3 (lower is better)
Translates to: PPFPCIHPSGDT*LSGFRNSDDVI
Trigger: TATAACATCATCGCTGTTGCGGAATCCACTTAGGCATGTGTCCCCTGATGGATGAATACATGGGAATGGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp CTATGGCAAACCCTTCCTCTCTCATCATGCAAACATTaGCTCACCCTAGGATTTTTCCTGCTTAGGCTCTTT +
Preference number: 3 (lower is better)
Translates to: LWQTLPLSSCKH*LTLGFFLLRLF
Trigger: AAAGAGCCTAAGCAGGAAAAATCCTAGGGTGAGGCAATGTTTGCATGATGAGAGAGGAAGGGTTTGCCATAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp TTCAGCTCTCTATGGCAAACCCTTCCTCTCTCATCATaGAAACATTGCCTCACCCTAGGATTTTTCCTGCTT +
Preference number: 3 (lower is better)
Translates to: FSSLWQTLPLSS*KHCLTLGFFLL
Trigger: AAGCAGGAAAAATCCTAGGGTGAGGCAATGTTTGCATGATGAGAGAGGAAGGGTTTGCCATAGAGAGCTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp AAAGAGAGCAAAATCAGTTGCCATCCTAGGCAAGGAGAGTTCACTGATGCCTGTCTCATCATGCAAACATaGCCTCACCCTAGGATTTTT +
Preference number: 3 (lower is better)
Translates to: KESKISCHPRQGEFTDACLIMQT*PHPRIF
Trigger: AAAAATCCTAGGGTGAGGCAATGTTTGCATGATGAG...ACAGGCATCAGTGAACTCTCCTTGCCTAGGATGGCAACTGATTTTGCTCTCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp AAAGAGAGCAAAATCAGTTGCCATCCTAGGCAAGGAGAGTTCACTGATGCCTGTAACAATGAGTCACCCTaGCTTTGCATTTCAATCAGG +
Preference number: 3 (lower is better)
Translates to: KESKISCHPRQGEFTDACNNESP*LCISIR
Trigger: CCTGATTGAAATGCAAAGCAAGGGTGACTCATTGTT...ACAGGCATCAGTGAACTCTCCTTGCCTAGGATGGCAACTGATTTTGCTCTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp AACAGCAGTTACTGTTTTTCTCCTCGTGCAGAAAGCTaGCCTCTTGGCCCAGAGGCACGGAATATTAATTTT +
Preference number: 3 (lower is better)
Translates to: NSSYCFSPRAES*PLGPEARNINF
Trigger: AAAATTAATATTCCGTGCCTCTGGGCCAAGAGGTCAGCTTTCTGCACGAGGAGAAAAACAGTAACTGCTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp CCGTGGCCTTTACTTCTCCTAACAATGAGTCACCCTTaGTTTGCATTTCAATCAGGTTCAAAGACTCAAAGC +
Preference number: 3 (lower is better)
Translates to: PWPLLLLTMSHP*FAFQSGSKTQS
Trigger: GCTTTGAGTCTTTGAACCTGATTGAAATGCAAAGCAAGGGTGACTCATTGTTAGGAGAAGTAAAGGCCACGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp ATGTCCCATGTCTCTTGTTACAGATTCTATTCTGGATaGCTAATTTCTCAGAGACAAAGGGCCCTGCTGTCT +
Preference number: 3 (lower is better)
Translates to: MSHVSCYRFYSG*LISQRQRALLS
Trigger: AGACAGCAGGGCCCTTTGTCTCTGAGAAATTAGCCATCCAGAATAGAATCTGTAACAAGAGACATGGGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp GCTTATGTCCCATGTCTCTTGTTACAGATTCTATTCTaGATGGCTAATTTCTCAGAGACAAAGGGCCCTGCT +
Preference number: 3 (lower is better)
Translates to: AYVPCLLLQILF*MANFSETKGPA
Trigger: AGCAGGGCCCTTTGTCTCTGAGAAATTAGCCATCCAGAATAGAATCTGTAACAAGAGACATGGGACATAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp GGAGTGCTAAGCTCTAGTCCAGGTTTCTCAAACACTTaGCTCAGCGGAAACAAATTAGCAACTAAAAGCTTT +
Preference number: 3 (lower is better)
Translates to: GVLSSSPGFSNT*LSGNKLATKSF
Trigger: AAAGCTTTTAGTTGCTAATTTGTTTCCGCTGAGCCAAGTGTTTGAGAAACCTGGACTAGAGCTTAGCACTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp ATCAAGAGACCAAGGTTCAGCTCAGCCAATGCACACATCAGTCTAAATCCCCATTTTAGTTATGTCTCTTaGGATGAGCTGCAAAGTATC +
Preference number: 3 (lower is better)
Translates to: IKRPRFSSANAHISLNPHFSYVS*DELQSI
Trigger: GATACTTTGCAGCTCATCCAAAGAGACATAACTAAA...ATGGGGATTTAGACTGATGTGTGCATTGGCTGAGCTGAACCTTGGTCTCTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp ATGACAGCAAACACTAATGACACCAAATCCTATGTGTaGCATAGAAGGCAGGGCCATAATCCCCTTTATACA +
Preference number: 3 (lower is better)
Translates to: MTANTNDTKSYV*HRRQGHNPLYT
Trigger: TGTATAAAGGGGATTATGGCCCTGCCTTCTATGTCACACATAGGATTTGGTGTCATTAGTGTTTGCTGTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp TTAAACTCTGAACAAAAAGTGCACACATCCACTAATTaGTCGCAATCCATCTTGTCTCATGCATCTCTGCTG +
Preference number: 3 (lower is better)
Translates to: LNSEQKVHTSTN*SQSILSHASLL
Trigger: CAGCAGAGATGCATGAGACAAGATGGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR GCA 72 bp GATTTTTATAGAACACTCTCTTTGCATGAGCTACACTaGAAAGTCCTGACACTTCAGAGGCTCTTCCTCAAT +
Preference number: 3 (lower is better)
Translates to: DFYRTLSLHELH*KVLTLQRLFLN
Trigger: ATTGAGGAAGAGCCTCTGAAGTGTCAGGACTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CCA 72 bp CTTCCTTTTAGAAACCAAGAGAAAATGCGGTCGTCCTaGATTTCAGGCTGTAACAAACAGCAGTTACTGTTT +
Preference number: 3 (lower is better)
Translates to: LPFRNQEKMRSS*ISGCNKQQLLF
Trigger: AAACAGTAACTGCTGTTTGTTACAGCCTGAAATCCAGGACGACCGCATTTTCTCTTGGTTTCTAAAAGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp CACTATTTAAAACCTTCAGACATAACCATAAGGTATTaGCTGGTTTGCAGGACAGCTCAGTCAGTGGGAAAA +
Preference number: 3 (lower is better)
Translates to: HYLKPSDITIRY*LVCRTAQSVGK
Trigger: TTTTCCCACTGACTGAGCTGTCCTGCAAACCAGTCAATACCTTATGGTTATGTCTGAAGGTTTTAAATAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR TCA 72 bp CCAAATCTGTCTTCCCAAGGCATGGAATCATTTCTATaGACCGAATGGTTATCTAATTTTGCCTGCACTCAT +
Preference number: 3 (lower is better)
Translates to: PNLSSQGMESFL*TEWLSNFACTH
Trigger: ATGAGTGCAGGCAAAATTAGATAACCATTCGGTTCATAGAAATGATTCCATGCCTTGGGAAGACAGATTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR-3UTR CAA 90 bp TCAGCTGTCAAGATTTTTATAGAACACTCTCTTTGCATGAGCTACACTGCAAAGTTTCAGTCCAAGGTGTaGGGTCAACCACTATTTAAA +
Preference number: 3 (lower is better)
Translates to: SAVKIFIEHSLCMSYTAKFQSKV*GQPLFK
Trigger: TTTAAATAGTGGTTGACCCAACACCTTGGACTGAAA...CTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATCTTGACAGCTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp GTGGGAGCCCCATCTGCCTCTGCAGACATCCAATCAGGACTCCGGGGTACAGGGGGCTGTGTATGGCTCTaGCAGAGGATGCTGGCTGGG +
Preference number: 4 (lower is better)
Translates to: VGAPSASADIQSGLRGTGGCVWL*QRMLAG
Trigger: CCCAGCCAGCATCCTCTGTCAGAGCCATACACAGCC...CCCTGTACCCCGGAGTCCTGATTGGATGTCTGCAGAGGCAGATGGGGCTCCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp TCATTATCCTGGACAGGGCTTTCCTTCTGTGTGGCAGGACCAGAGAGAGGAAGCCCCCAGCTCCCCGGCTaGGGCTGGGCTCGACGACTC +
Preference number: 4 (lower is better)
Translates to: SLSWTGLSFCVAGPERGSPQLPG*GWARRL
Trigger: GAGTCGTCGAGCCCAGCCTCAGCCGGGGAGCTGGGG...GCTTCCTCTCTCTGGTCCTGCCACACAGAAGGAAAGCCCTGTCCAGGATAATGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR GCA 90 bp CCCATCTGCCTCTGCAGACATCCAATCAGGACTCCGGGGTACAGGGTGGAGAGAGACAGGCTGAAGGGATaGAGGCGTGGGTTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: PICLCRHPIRTPGYRVERDRLKG*RRGLGL
Trigger: GAGCCCCAACCCACGCCTGCATCCCTTCAGCCTGTC...TCTCTCCACCCTGTACCCCGGAGTCCTGATTGGATGTCTGCAGAGGCAGATGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp AGCAAGGGTGTCAGCAACGCTCATTATCCTGGACAGGGCTTTCCTTCTGTGTGGCCCGGGGCATGGCTCTaGCAGGGCTGTGGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: SKGVSNAHYPGQGFPSVWPGAWL*QGCGPE
Trigger: CTCAGGCCCACAGCCCTGCCAGAGCCATGCCCCGGG...CCACACAGAAGGAAAGCCCTGTCCAGGATAATGAGCGTTGCTGACACCCTTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp AACAGGAGGGCTGCCAAGATCACAGTGGCCCTGAGCTaGGCCATCTGCCAGCTGGGAATCCACCACGGTAGG +
Preference number: 4 (lower is better)
Translates to: NRRAAKITVALS*AICQLGIHHGR
Trigger: CCTACCGTGGTGGATTCCCAGCTGGCAGATGGCCAAGCTCAGGGCCACTGTGATCTTGGCAGCCCTCCTGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp AGCAAGGGTGTCAGCAACGCTCATTATCCTGGACAGGGCTTTCCTTCTGTGTGGAGTCTCTCCGGGCTCTaGCAGCTCGCTCAGCTTGCG +
Preference number: 4 (lower is better)
Translates to: SKGVSNAHYPGQGFPSVWSLSGL*QLAQLA
Trigger: CGCAAGCTGAGCGAGCTGTCAGAGCCCGGAGAGACT...CCACACAGAAGGAAAGCCCTGTCCAGGATAATGAGCGTTGCTGACACCCTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR GCA 90 bp GGCATTTCAGAGAGAGCCAAAGAGCTGAGTGCTGCACAGTCAGGCCGCTGCAGTTGCCCTCAGAGTCACTaGTGTGACTACTGGGTGGTG +
Preference number: 4 (lower is better)
Translates to: GISERAKELSAAQSGRCSCPQSH*CDYWVV
Trigger: CACCACCCAGTAGTCACAGCAGTGACTCTGAGGGCA...ACTGCAGCGGCCTGACTGTGCAGCACTCAGCTCTTTGGCTCTCTCTGAAATGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR GCA 90 bp ATATCCCTGTTGTATGTGGATAACAGTTGCAGGGGCTCTGGGGGCACCCAAGAGGGCTCTGACAGAGGATaGTGGCTGGGCAGAGCCATC +
Preference number: 4 (lower is better)
Translates to: ISLLYVDNSCRGSGGTQEGSDRG*WLGRAI
Trigger: GATGGCTCTGCCCAGCCAGCATCCTCTGTCAGAGCC...CTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp ACAAAGACTAGGGTCCTAGATTCCGGGGACTCTCCTGTTCCAAAGGCCAACAGAGATGCAGGCGTGGGTTaGGGCTCAAGCTGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: TKTRVLDSGDSPVPKANRDAGVG*GSSCPQ
Trigger: CTGAGGGCAGCTTGAGCCCCAACCCACGCCTGCATC...TCTGTTGGCCTTTGGAACAGGAGAGTCCCCGGAATCTAGGACCCTAGTCTTTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp AGTCCTAGTGAGGAAGGGAGCTCAGGAGTCAGTGCTTaGCCACTCCCTGGCATGTCTGTGGCATGTGTGTGG +
Preference number: 4 (lower is better)
Translates to: SPSEEGSSGVSA*PLPGMSVACVW
Trigger: CCACACACATGCCACAGACATGCCAGGGAGTGGCAAAGCACTGACTCCTGAGCTCCCTTCCTCACTAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp CGGGGTACAGGGTGGAGAGAAGACTGCAATGACGCTTaGGTCCTCTCAGTGCAGGGTCACACTGGAGTCCTA +
Preference number: 4 (lower is better)
Translates to: RGTGWREDCNDA*VLSVQGHTGVL
Trigger: TAGGACTCCAGTGTGACCCTGCACTGAGAGGACCAAAGCGTCATTGCAGTCTTCTCTCCACCCTGTACCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp ACAAAGACTAGGGTCCTAGATTCCGGGGACTCTCCTGTTCCAAAGGCCAACAGAGGGTCACTCAGGAGCTaGCCCAGGACGTTCTGGGAA +
Preference number: 4 (lower is better)
Translates to: TKTRVLDSGDSPVPKANRGSLRS*PRTFWE
Trigger: TTCCCAGAACGTCCTGGGTCAGCTCCTGAGTGACCC...TCTGTTGGCCTTTGGAACAGGAGAGTCCCCGGAATCTAGGACCCTAGTCTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp ATATCCCTGTTGTATGTGGATAACAGTTGCAGGGGCTCTGGGGGCACCCAAGAGACAGAGGATGCTGGCTaGGCAGAGCCATCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: ISLLYVDNSCRGSGGTQETEDAG*AEPSWW
Trigger: CCACCAAGATGGCTCTGCCCAGCCAGCATCCTCTGT...CTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp GGTGGGGACAAGATGTCTCCATTTCTCCATGGGGGCTaGCGCACACACTTCACAAGGCTCAGAGGCACTTCT +
Preference number: 4 (lower is better)
Translates to: GGDKMSPFLHGG*RTHFTRLRGTS
Trigger: AGAAGTGCCTCTGAGCCTTGTGAAGTGTGTGCGCAAGCCCCCATGGAGAAATGGAGACATCTTGTCCCCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp GCTTCATCTGTGCAGCCACGAGTGCACACCCCGCTGTaGAGCAAAAGACAGAAACAGAAGTGCAGCCTGACC +
Preference number: 4 (lower is better)
Translates to: ASSVQPRVHTPL*SKRQKQKCSLT
Trigger: GGTCAGGCTGCACTTCTGTTTCTGTCTTTTGCTCAACAGCGGGGTGTGCACTCGTGGCTGCACAGATGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp TGGCAAACCCTTCCTCTCTCATCATGCAAACATTGCCTCACCCTAGGATTTTTCGCCCCGACGATGCCCTaGGCAGAGAGGAGCCTCTGT +
Preference number: 4 (lower is better)
Translates to: WQTLPLSSCKHCLTLGFFAPTMP*AERSLC
Trigger: ACAGAGGCTCCTCTCTGCTCAGGGCATCGTCGGGGC...GAAAAATCCTAGGGTGAGGCAATGTTTGCATGATGAGAGAGGAAGGGTTTGCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp ACAAAGACTAGGGTCCTAGATTCCGGGGACTCTCCTGTTCCAAAGGCCAACAGAGCAGCTTGGTGGGAATaGGATAGCCCTCGGCAACCA +
Preference number: 4 (lower is better)
Translates to: TKTRVLDSGDSPVPKANRAAWWE*DSPRQP
Trigger: TGGTTGCCGAGGGCTATCCCATTCCCACCAAGCTGC...TCTGTTGGCCTTTGGAACAGGAGAGTCCCCGGAATCTAGGACCCTAGTCTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp TCCTCCCGGGGAAGAATCAGGCAGTGTCTTCTTGGCACTATTGGTGGAAACAAGTCAGAGGCAGCTTGGTaGGAATGGGATAGCCCTCGG +
Preference number: 4 (lower is better)
Translates to: SSRGRIRQCLLGTIGGNKSEAAW*EWDSPR
Trigger: CCGAGGGCTATCCCATTCCCACCAAGCTGCCTCTGA...CTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTTCCCCGGGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp AGTAAGAGAAAGGGATGGAGAGGTGCTAGCTCCCTTTaGTGGAGAGCCACGGGGACACATAAGCAGAACCCC +
Preference number: 4 (lower is better)
Translates to: SKRKGWRGASSL*WRATGTHKQNP
Trigger: GGGGTTCTGCTTATGTGTCCCCGTGGCTCTCCACAAAAGGGAGCTAGCACCTCTCCATCCCTTTCTCTTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp CCCGGGGAAGAATCAGGCAGTGTCTTCTTGGCACTATaGGTGGAAACAAGCCTGCTCGTTCCACCCCTATCT +
Preference number: 4 (lower is better)
Translates to: PGEESGSVFLAL*VETSLLVPPLS
Trigger: AGATAGGGGTGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTTCCCCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp GTCACTCCTCCCGGGGAAGAATCAGGCAGTGTCTTCTaGGCACTATTGGTGGAAACAAGCCTGCTCGTTCCA +
Preference number: 4 (lower is better)
Translates to: VTPPGEESGSVF*ALLVETSLLVP
Trigger: TGGAACGAGCAGGCTTGTTTCCACCAATAGTGCCAAGAAGACACTGCCTGATTCTTCCCCGGGAGGAGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp CAGCTCTCCAGGGACATCAAGAGACCAAGGTTCAGCTCAGCCAATGCACACATCGCTTATGTGGAGCTGTaGGGAGAGGAGATGTGGACA +
Preference number: 4 (lower is better)
Translates to: QLSRDIKRPRFSSANAHIAYVEL*GEEMWT
Trigger: TGTCCACATCTCCTCTCCTCACAGCTCCACATAAGC...GATGTGTGCATTGGCTGAGCTGAACCTTGGTCTCTTGATGTCCCTGGAGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR GCA 90 bp CTCAGCCAATGCACACATCAGTCTAAATCCCCATTTCAGCTCTCTATGGCAAACACAGCTCGCTCAGCTTaGGGTCCCACTGCAGGACGC +
Preference number: 4 (lower is better)
Translates to: LSQCTHQSKSPFQLSMANTARSA*GPTAGR
Trigger: GCGTCCTGCAGTGGGACCGCAAGCTGAGCGAGCTGT...GTTTGCCATAGAGAGCTGAAATGGGGATTTAGACTGATGTGTGCATTGGCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR GCA 90 bp AGCAAGGGTGTCAGCAACGCTCATTATCCTGGACAGGGCTTTCCTTCTGTGTGGGTGTGCCAGCTAACTTaGAGGTTCGAGAGACCTTCC +
Preference number: 4 (lower is better)
Translates to: SKGVSNAHYPGQGFPSVWVCQLT*RFERPS
Trigger: GGAAGGTCTCTCGAACCTGCAAGTTAGCTGGCACAC...CCACACAGAAGGAAAGCCCTGTCCAGGATAATGAGCGTTGCTGACACCCTTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR GCA 90 bp CTAGCCTTAAACTCTGAACAAAAAGTGCACACATCCACTAATTGCTCGCAATCCCACTGCAGGACGCTCTaGTCCCCGCTCTCCAGCACC +
Preference number: 4 (lower is better)
Translates to: LALNSEQKVHTSTNCSQSHCRTL*SPLSST
Trigger: GGTGCTGGAGAGCGGGGAGCAGAGCGTCCTGCAGTG...GGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAAGGCTAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR GCA 90 bp AAAGAGAGCAAAATCAGTTGCCATCCTAGGCAAGGAGAGTTCACTGATGCCTGTAGGAGCTCCGAGAAGTaGGTGTGGTACATGAGGGCC +
Preference number: 4 (lower is better)
Translates to: KESKISCHPRQGEFTDACRSSEK*VWYMRA
Trigger: GGCCCTCATGTACCACACGCACTTCTCGGAGCTCCT...ACAGGCATCAGTGAACTCTCCTTGCCTAGGATGGCAACTGATTTTGCTCTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp TCAAGTACAAAGACTAGGGTCCTAGATTCCGGGGACTCTCCTGTTCCAAAGGCCGAAGGAGAGTCCTATTaGTGTTCTCCAGCACCTCCA +
Preference number: 4 (lower is better)
Translates to: SSTKTRVLDSGDSPVPKAEGESY*CSPAPP
Trigger: TGGAGGTGCTGGAGAACACCAATAGGACTCTCCTTC...GGCCTTTGGAACAGGAGAGTCCCCGGAATCTAGGACCCTAGTCTTTGTACTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp TCAAGTACAAAGACTAGGGTCCTAGATTCCGGGGACTCTCCTGTTCCAAAGGCCTGTCTTGATGGTAGCTaGAGGAAACTCTGTAGACAG +
Preference number: 4 (lower is better)
Translates to: SSTKTRVLDSGDSPVPKACLDGS*RKLCRQ
Trigger: CTGTCTACAGAGTTTCCTTCAGCTACCATCAAGACA...GGCCTTTGGAACAGGAGAGTCCCCGGAATCTAGGACCCTAGTCTTTGTACTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp CTCAGCCAATGCACACATCAGTCTAAATCCCCATTTCAGCTCTCTATGGCAAACTCAGAGTCACTGCTGTaGCTACTGGGTGGTGTTGGT +
Preference number: 4 (lower is better)
Translates to: LSQCTHQSKSPFQLSMANSESLL*LLGGVG
Trigger: ACCAACACCACCCAGTAGTCACAGCAGTGACTCTGA...GTTTGCCATAGAGAGCTGAAATGGGGATTTAGACTGATGTGTGCATTGGCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp TCAGCTGTCAAGATTTTTATAGAACACTCTCTTTGCATGAGCTACACTGCAAAGTGGGTAAATGGTGACTaGGTCCGGGGCTCCTCGCTC +
Preference number: 4 (lower is better)
Translates to: SAVKIFIEHSLCMSYTAKWVNGD*VRGSSL
Trigger: GAGCGAGGAGCCCCGGACTCAGTCACCATTTACCCA...CTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATCTTGACAGCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp CTAGCCTTAAACTCTGAACAAAAAGTGCACACATCCACTAATTGCTCGCAATCCCTGACCAGGTGCTGCTaGAGCTCCAACAGTACTGAC +
Preference number: 4 (lower is better)
Translates to: LALNSEQKVHTSTNCSQSLTRCC*SSNSTD
Trigger: GTCAGTACTGTTGGAGCTTCAGCAGCACCTGGTCAG...GGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAAGGCTAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp AGTCCAAGGTGTTGGGTCAACCACTATTTAAAACCTTCAGACATAACCATAAGGCTTCCAGTTTGCTGCTaGCCAGGTGCTGCTGAAGCT +
Preference number: 4 (lower is better)
Translates to: SPRCWVNHYLKPSDITIRLPVCC*PGAAEA
Trigger: AGCTTCAGCAGCACCTGGTCAGCAGCAAACTGGAAG...CCTTATGGTTATGTCTGAAGGTTTTAAATAGTGGTTGACCCAACACCTTGGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR GCA 90 bp CTAGCCTTAAACTCTGAACAAAAAGTGCACACATCCACTAATTGCTCGCAATCCAGGTGCCAGTCTGTGTaGCAGCTAACTTGCAGGTTC +
Preference number: 4 (lower is better)
Translates to: LALNSEQKVHTSTNCSQSRCQSV*QLTCRF
Trigger: GAACCTGCAAGTTAGCTGGCACACAGACTGGCACCT...GGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAAGGCTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR GCA 90 bp TCAAGTACAAAGACTAGGGTCCTAGATTCCGGGGACTCTCCTGTTCCAAAGGCCAAAGAAGCTTCCAAATaGAACAGCAAAGCAAAGCAC +
Preference number: 4 (lower is better)
Translates to: SSTKTRVLDSGDSPVPKAKEASK*NSKAKH
Trigger: GTGCTTTGCTTTGCTGTTGCATTTGGAAGCTTCTTT...GGCCTTTGGAACAGGAGAGTCCCCGGAATCTAGGACCCTAGTCTTTGTACTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp GCCATCCTGGATTCAGATACAAGGCACATCAGAGGCATGAATAAGTACTTAGGACTGCTCCTCTGTGATTaGCTCTGTCTTGATGGTAGC +
Preference number: 4 (lower is better)
Translates to: AILDSDTRHIRGMNKYLGLLLCD*LCLDGS
Trigger: GCTACCATCAAGACAGAGCCAATCACAGAGGAGCAG...TCCTAAGTACTTATTCATGCCTCTGATGTGCCTTGTATCTGAATCCAGGATGGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp CAGTGTTGGTTGCCGAGAGCTCCTTTAAAGGGCTGTTaGAGTTCTCTGGCTTATGTCCCATGTCTCTTGTTA +
Preference number: 4 (lower is better)
Translates to: QCWLPRAPLKGC*SSLAYVPCLLL
Trigger: TAACAAGAGACATGGGACATAAGCCAGAGAACTCAAACAGCCCTTTAAAGGAGCTCTCGGCAACCAACACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp AAAGTGCACACATCCACTAATTGCTCGCAATCCATCTaGTCTCATGCATCTCTGCTGGGTCCCTTGACTCTA +
Preference number: 4 (lower is better)
Translates to: KVHTSTNCSQSI*SHASLLGPLTL
Trigger: TAGAGTCAAGGGACCCAGCAGAGATGCATGAGACAAGATGGATTGCGAGCAATTAGTGGATGTGTGCACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp TCAGCTGTCAAGATTTTTATAGAACACTCTCTTTGCATGAGCTACACTGCAAAGTGTGTTCAGCCTGGATaGGAGGCGCTGGTGATGTTG +
Preference number: 4 (lower is better)
Translates to: SAVKIFIEHSLCMSYTAKCVQPG*EALVML
Trigger: CAACATCACCAGCGCCTCTCATCCAGGCTGAACACA...CTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATCTTGACAGCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp CTAGCCTTAAACTCTGAACAAAAAGTGCACACATCCACTAATTGCTCGCAATCCAAGCTCCAACAGTACTaGCTTCTCCAAGCTCGTCTC +
Preference number: 4 (lower is better)
Translates to: LALNSEQKVHTSTNCSQSKLQQY*LLQARL
Trigger: GAGACGAGCTTGGAGAAGTCAGTACTGTTGGAGCTT...GGATTGCGAGCAATTAGTGGATGTGTGCACTTTTTGTTCAGAGTTTAAGGCTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp AGTCCAAGGTGTTGGGTCAACCACTATTTAAAACCTTCAGACATAACCATAAGGGCAGAGCCATCTTGGTaGCAGAAGGATAAGGCCCAT +
Preference number: 4 (lower is better)
Translates to: SPRCWVNHYLKPSDITIRAEPSW*QKDKAH
Trigger: ATGGGCCTTATCCTTCTGCCACCAAGATGGCTCTGC...CCTTATGGTTATGTCTGAAGGTTTTAAATAGTGGTTGACCCAACACCTTGGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp TTTCAAAATTTCAGTCCAAGGTGTTGGGTCAACCACTATTTAAAACCTTCAGACTCTGACAGAGGATGCTaGCTGGGCAGAGCCATCTTG +
Preference number: 4 (lower is better)
Translates to: FQNFSPRCWVNHYLKPSDSDRGC*LGRAIL
Trigger: CAAGATGGCTCTGCCCAGCCAGCATCCTCTGTCAGA...GTCTGAAGGTTTTAAATAGTGGTTGACCCAACACCTTGGACTGAAATTTTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp TGGAATCATTTCTATGAACCGAATGGTTATCTAATTTaGCCTGCACTCATGTTAGATCCCACCCCCACCTCC +
Preference number: 4 (lower is better)
Translates to: WNHFYEPNGYLI*PALMLDPTPTS
Trigger: GGAGGTGGGGGTGGGATCTAACATGAGTGCAGGCAAAATTAGATAACCATTCGGTTCATAGAAATGATTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp GTTACTGTTTTTCTCCTCGTGCAGAAAGCTGACCTCTaGGCCCAGAGGCACGGAATATTAATTTTCAAATGG +
Preference number: 4 (lower is better)
Translates to: VTVFLLVQKADL*AQRHGILIFKW
Trigger: CCATTTGAAAATTAATATTCCGTGCCTCTGGGCCAAGAGGTCAGCTTTCTGCACGAGGAGAAAAACAGTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR TCA 90 bp TTTCAAAATTTCAGTCCAAGGTGTTGGGTCAACCACTATTTAAAACCTTCAGACGAGAAGTTTAAGAACTaGTCCACTTCGTGCGGCTCC +
Preference number: 4 (lower is better)
Translates to: FQNFSPRCWVNHYLKPSDEKFKN*STSCGS
Trigger: GGAGCCGCACGAAGTGGATCAGTTCTTAAACTTCTC...GTCTGAAGGTTTTAAATAGTGGTTGACCCAACACCTTGGACTGAAATTTTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp GGCTGTTTGAGTTCTCTGGCTTATGTCCCATGTCTCTaGTTACAGATTCTATTCTGGATGGCTAATTTCTCA +
Preference number: 4 (lower is better)
Translates to: GCLSSLAYVPCL*LQILFWMANFS
Trigger: TGAGAAATTAGCCATCCAGAATAGAATCTGTAACAAGAGACATGGGACATAAGCCAGAGAACTCAAACAGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
3UTR CAA 72 bp CCACTATTTAAAACCTTCAGACATAACCATAAGGTATaGACTGGTTTGCAGGACAGCTCAGTCAGTGGGAAA +
Preference number: 4 (lower is better)
Translates to: PLFKTFRHNHKV*TGLQDSSVSGK
Trigger: TTTCCCACTGACTGAGCTGTCCTGCAAACCAGTCAATACCTTATGGTTATGTCTGAAGGTTTTAAATAGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CCA 90 bp TCAAACACTTGGCTCAGCGGAAACAAATTAGCAACTAAAAGCTTTTTCTCCCATTTTCTCCTGCTTTCTTaGGCAGAAATCTTATTCTTG +
Preference number: 4 (lower is better)
Translates to: SNTWLSGNKLATKSFFSHFLLLS*AEILFL
Trigger: CAAGAATAAGATTTCTGCCCAAGAAAGCAGGAGAAA...ATGGGAGAAAAAGCTTTTAGTTGCTAATTTGTTTCCGCTGAGCCAAGTGTTTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 90 bp CGAGAAGTGCGTGTGGTACATGAGGGCCTCAGTCTCTCCGGGCTCTaGCAGCTCGCTCAGCTTGCGGTCCCACTGCAGGACGCTCTGCTC +
Preference number: 5 (lower is better)
Translates to: REVRVVHEGLSLSGL*QLAQLAVPLQDALL
Trigger: GAGCAGAGCGTCCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTCAGAGCCCGGAGAGACTGAGGCCCTCATGTACCACACGCACTTCTCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CCA 90 bp CAAGCTCGTCTCATTGGAGATAAGGAAATGGGGAAGATCCACCTCTaGCAGGGCCTCAAGCCCCGACGATGCCCTGAGCAGAGAGGAGCC +
Preference number: 5 (lower is better)
Translates to: QARLIGDKEMGKIHL*QGLKPRRCPEQRGA
Trigger: GGCTCCTCTCTGCTCAGGGCATCGTCGGGGCTTGAGGCCCTGCCAGAGGTGGATCTTCCCCATTTCCTTATCTCCAATGAGACGAGCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CAA 90 bp ATATCCCTGTTGTATGTGGATAACAGTTGCAGGGGCTCTGGGGGCACCCAAGAGGGATGCAGGCGTGGGTaGGGGCTCAAGCTGCCCTCA +
Preference number: 5 (lower is better)
Translates to: ISLLYVDNSCRGSGGTQEGCRRG*GLKLPS
Trigger: TGAGGGCAGCTTGAGCCCCAACCCACGCCTGCATCC...CTCTTGGGTGCCCCCAGAGCCCCTGCAACTGTTATCCACATACAACAGGGATAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 90 bp CTCCTCGTCATTGAAGCTGTCGCTGGTAGCCGCATGGGTAAATGGTaGCTGAGTCCGGGGCTCCTCGCTCAGAGAGTAGCTGTGTTCAGC +
Preference number: 5 (lower is better)
Translates to: LLVIEAVAGSRMGKW*LSPGLLAQRVAVFS
Trigger: GCTGAACACAGCTACTCTCTGAGCGAGGAGCCCCGGACTCAGTCACCATTTACCCATGCGGCTACCAGCGACAGCTTCAATGACGAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS GCA 90 bp AGGGATGCAGGCGTGGGTTGGGGCTCAAGCTGCCCTCAGAGTCACTaGTGTGACTACTGGGTGGTGTTGGTGGTAAGTGCAGTTGATCCA +
Preference number: 5 (lower is better)
Translates to: RDAGVGWGSSCPQSH*CDYWVVLVVSAVDP
Trigger: TGGATCAACTGCACTTACCACCAACACCACCCAGTAGTCACAGCAGTGACTCTGAGGGCAGCTTGAGCCCCAACCCACGCCTGCATCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CCA 90 bp GTGGGTTGGGGCTCAAGCTGCCCTCAGAGTCACTGCTGTGACTACTaGGTGGTGTTGGTGGTAAGTGCAGTTGATCCACGGAGGCTTCTT +
Preference number: 5 (lower is better)
Translates to: VGWGSSCPQSHCCDY*VVLVVSAVDPRRLL
Trigger: AAGAAGCCTCCGTGGATCAACTGCACTTACCACCAACACCACCCAGTAGTCACAGCAGTGACTCTGAGGGCAGCTTGAGCCCCAACCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CAA 90 bp CATTTCTCCATGGGGGCTTGCGCACACACTTCACAAGGCTCAGAGGCACTTCTATCGTTCCCTTCCAGTTaGCTGCTGACCAGGTGCTGC +
Preference number: 5 (lower is better)
Translates to: HFSMGACAHTSQGSEALLSFPSS*LLTRCC
Trigger: GCAGCACCTGGTCAGCAGCAAACTGGAAGGGAACGA...TAGAAGTGCCTCTGAGCCTTGTGAAGTGTGTGCGCAAGCCCCCATGGAGAAATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 90 bp TCCATTGACTCGCTCTTCTCTGAGAGGAAAGGGTCACTCAGGAGCTaGCCCAGGACGTTCTGGGAAAACTCGTCTAGGAGCTCCGAGAAG +
Preference number: 5 (lower is better)
Translates to: SIDSLFSERKGSLRS*PRTFWENSSRSSEK
Trigger: CTTCTCGGAGCTCCTAGACGAGTTTTCCCAGAACGTCCTGGGTCAGCTCCTGAGTGACCCTTTCCTCTCAGAGAAGAGCGAGTCAATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS GCA 90 bp ATGGCTGTGATGGTCAGAGTGACAGAAGGGACAAGTCCCGGGGGCTaGTCCTCTGTGATTGGCTCTGTCTTGATGGTAGCTGAAGGAAAC +
Preference number: 5 (lower is better)
Translates to: MAVMVRVTEGTSPGG*SSVIGSVLMVAEGN
Trigger: GTTTCCTTCAGCTACCATCAAGACAGAGCCAATCACAGAGGAGCAGCCCCCGGGACTTGTCCCTTCTGTCACTCTGACCATCACAGCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CCA 90 bp ACGACTCTTCCAGGGGAGCGTGTTCCTCATAGATTAGCAGGTTCCTaGATCTCACCACGGAGGCTGTGTATGGCTCTGACAGAGGATGCT +
Preference number: 5 (lower is better)
Translates to: TTLPGERVPHRLAGS*ISPRRLCMALTEDA
Trigger: AGCATCCTCTGTCAGAGCCATACACAGCCTCCGTGGTGAGATCCAGGAACCTGCTAATCTATGAGGAACACGCTCCCCTGGAAGAGTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CAA 90 bp CTCAGCCAATGCACACATCAGTCTAAATCCCCATTTCAGCTCTCTATGGCAAACGACAGCTCGCTCAGCTaGCGGTCCCACTGCAGGACG +
Preference number: 5 (lower is better)
Translates to: LSQCTHQSKSPFQLSMANDSSLS*RSHCRT
Trigger: CGTCCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTC...GTTTGCCATAGAGAGCTGAAATGGGGATTTAGACTGATGTGTGCATTGGCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CCA 90 bp CTGTGTATGGCTCTGACAGAGGATGCTGGCTGGGCAGAGCCATCTTaGTGGCAGAAGGATAAGGCCCATAGCCTTGAAAGAAGCTTCCAA +
Preference number: 5 (lower is better)
Translates to: LCMALTEDAGWAEPS*WQKDKAHSLERSFQ
Trigger: TTGGAAGCTTCTTTCAAGGCTATGGGCCTTATCCTTCTGCCACCAAGATGGCTCTGCCCAGCCAGCATCCTCTGTCAGAGCCATACACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CAA 90 bp CATTTCTCCATGGGGGCTTGCGCACACACTTCACAAGGCTCAGAGGCACTTCTATGTGTGCCAGCTAACTaGCAGGTTCGAGAGACCTTC +
Preference number: 5 (lower is better)
Translates to: HFSMGACAHTSQGSEALLCVPAN*QVRETF
Trigger: GAAGGTCTCTCGAACCTGCAAGTTAGCTGGCACACA...TAGAAGTGCCTCTGAGCCTTGTGAAGTGTGTGCGCAAGCCCCCATGGAGAAATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CCA 90 bp TGTATGGCTCTGACAGAGGATGCTGGCTGGGCAGAGCCATCTTGGTaGCAGAAGGATAAGGCCCATAGCCTTGAAAGAAGCTTCCAAATG +
Preference number: 5 (lower is better)
Translates to: CMALTEDAGWAEPSW*QKDKAHSLERSFQM
Trigger: CATTTGGAAGCTTCTTTCAAGGCTATGGGCCTTATCCTTCTGCCACCAAGATGGCTCTGCCCAGCCAGCATCCTCTGTCAGAGCCATACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 90 bp GAAAGAAGCTTCCAAATGCAACAGCAAAGCAAAGCACAACGACCATaGGGCAGGTGCCAGTCTGTGTGCCAGCTAACTTGCAGGTTCGAG +
Preference number: 5 (lower is better)
Translates to: ERSFQMQQQSKAQRP*GRCQSVCQLTCRFE
Trigger: CTCGAACCTGCAAGTTAGCTGGCACACAGACTGGCACCTGCCTCATGGTCGTTGTGCTTTGCTTTGCTGTTGCATTTGGAAGCTTCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS GCA 90 bp GGTGGCAGAAGGATAAGGCCCATAGCCTTGAAAGAAGCTTCCAAATaGAACAGCAAAGCAAAGCACAACGACCATGAGGCAGGTGCCAGT +
Preference number: 5 (lower is better)
Translates to: GGRRIRPIALKEASK*NSKAKHNDHEAGAS
Trigger: ACTGGCACCTGCCTCATGGTCGTTGTGCTTTGCTTTGCTGTTGCATTTGGAAGCTTCTTTCAAGGCTATGGGCCTTATCCTTCTGCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CAA 90 bp CATTTCTCCATGGGGGCTTGCGCACACACTTCACAAGGCTCAGAGGCACTTCTACTTTCTCCTGCTTTCTaGGGCAGAAATCTTATTCTT +
Preference number: 5 (lower is better)
Translates to: HFSMGACAHTSQGSEALLLSPAF*GRNLIL
Trigger: AAGAATAAGATTTCTGCCCAAGAAAGCAGGAGAAAG...TAGAAGTGCCTCTGAGCCTTGTGAAGTGTGTGCGCAAGCCCCCATGGAGAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CAA 90 bp AGCTCTCCAGGGACATCAAGAGACCAAGGTTCAGCTCAGCCAATGCACACATCAGCAGAAATCTTATTCTaGATCTTTCTCCGGATTTTC +
Preference number: 5 (lower is better)
Translates to: SSPGTSRDQGSAQPMHTSAEILF*IFLRIF
Trigger: GAAAATCCGGAGAAAGATCAAGAATAAGATTTCTGC...TGATGTGTGCATTGGCTGAGCTGAACCTTGGTCTCTTGATGTCCCTGGAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CAA 90 bp TGGCAAACCCTTCCTCTCTCATCATGCAAACATTGCCTCACCCTAGGATTTTTCGCTCCAAGTTCTCAGTaGAACAAGACTCCACTTTTT +
Preference number: 5 (lower is better)
Translates to: WQTLPLSSCKHCLTLGFFAPSSQ*NKTPLF
Trigger: AAAAAGTGGAGTCTTGTTCAACTGAGAACTTGGAGC...GAAAAATCCTAGGGTGAGGCAATGTTTGCATGATGAGAGAGGAAGGGTTTGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS-3UTR CAA 90 bp TCAGCTGTCAAGATTTTTATAGAACACTCTCTTTGCATGAGCTACACTGCAAAGCTGAAGCTTCTGAAGTaGCTGAAGGAGAGTCCTATT +
Preference number: 5 (lower is better)
Translates to: SAVKIFIEHSLCMSYTAKLKLLK*LKESPI
Trigger: AATAGGACTCTCCTTCAGCAACTTCAGAAGCTTCAG...CTTTGCAGTGTAGCTCATGCAAAGAGAGTGTTCTATAAAAATCTTGACAGCTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CAA 72 bp GCCTCAGTCTCTCCGGGCTCTGACAGCTCGCTCAGCTaGCGGTCCCACTGCAGGACGCTCTGCTCCCCGCTC +
Preference number: 6 (lower is better)
Translates to: ASVSPGSDSSLS*RSHCRTLCSPL
Trigger: GAGCGGGGAGCAGAGCGTCCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTCAGAGCCCGGAGAGACTGAGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CAA 90 bp TACATGAGGGCCTCAGTCTCTCCGGGCTCTGACAGCTCGCTCAGCTaGCGGTCCCACTGCAGGACGCTCTGCTCCCCGCTCTCCAGCACC +
Preference number: 6 (lower is better)
Translates to: YMRASVSPGSDSSLS*RSHCRTLCSPLSST
Trigger: GGTGCTGGAGAGCGGGGAGCAGAGCGTCCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTCAGAGCCCGGAGAGACTGAGGCCCTCATGTA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 72 bp CGTGTGGTACATGAGGGCCTCAGTCTCTCCGGGCTCTaGCAGCTCGCTCAGCTTGCGGTCCCACTGCAGGAC +
Preference number: 6 (lower is better)
Translates to: RVVHEGLSLSGL*QLAQLAVPLQD
Trigger: GTCCTGCAGTGGGACCGCAAGCTGAGCGAGCTGTCAGAGCCCGGAGAGACTGAGGCCCTCATGTACCACACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 72 bp ACTCGTCTAGGAGCTCCGAGAAGTGCGTGTGGTACATaGGGGCCTCAGTCTCTCCGGGCTCTGACAGCTCGC +
Preference number: 6 (lower is better)
Translates to: TRLGAPRSACGT*GPQSLRALTAR
Trigger: GCGAGCTGTCAGAGCCCGGAGAGACTGAGGCCCTCATGTACCACACGCACTTCTCGGAGCTCCTAGACGAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS GCA 72 bp GGCGTGGGTTGGGGCTCAAGCTGCCCTCAGAGTCACTaGTGTGACTACTGGGTGGTGTTGGTGGTAAGTGCA +
Preference number: 6 (lower is better)
Translates to: GVGWGSSCPQSH*CDYWVVLVVSA
Trigger: TGCACTTACCACCAACACCACCCAGTAGTCACAGCAGTGACTCTGAGGGCAGCTTGAGCCCCAACCCACGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS GCA 72 bp TTCTCCTCTTCTGTCAGGACCAGGGGGCCCGATCCCTaGAGCTTATGTGGAGCTGTGAGGAGAGGAGATGTG +
Preference number: 6 (lower is better)
Translates to: FSSSVRTRGPDP*SLCGAVRRGDV
Trigger: CACATCTCCTCTCCTCACAGCTCCACATAAGCTGCAGGGATCGGGCCCCCTGGTCCTGACAGAAGAGGAGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CCA 72 bp CTCATTGGAGATAAGGAAATGGGGAAGATCCACCTCTaGCAGGGCCTCAAGCCCCGACGATGCCCTGAGCAG +
Preference number: 6 (lower is better)
Translates to: LIGDKEMGKIHL*QGLKPRRCPEQ
Trigger: CTGCTCAGGGCATCGTCGGGGCTTGAGGCCCTGCCAGAGGTGGATCTTCCCCATTTCCTTATCTCCAATGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 72 bp ATTGAAGCTGTCGCTGGTAGCCGCATGGGTAAATGGTaGCTGAGTCCGGGGCTCCTCGCTCAGAGAGTAGCT +
Preference number: 6 (lower is better)
Translates to: IEAVAGSRMGKW*LSPGLLAQRVA
Trigger: AGCTACTCTCTGAGCGAGGAGCCCCGGACTCAGTCACCATTTACCCATGCGGCTACCAGCGACAGCTTCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CCA 72 bp GGCTCAAGCTGCCCTCAGAGTCACTGCTGTGACTACTaGGTGGTGTTGGTGGTAAGTGCAGTTGATCCACGG +
Preference number: 6 (lower is better)
Translates to: GSSCPQSHCCDY*VVLVVSAVDPR
Trigger: CCGTGGATCAACTGCACTTACCACCAACACCACCCAGTAGTCACAGCAGTGACTCTGAGGGCAGCTTGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 72 bp TCGCTCTTCTCTGAGAGGAAAGGGTCACTCAGGAGCTaGCCCAGGACGTTCTGGGAAAACTCGTCTAGGAGC +
Preference number: 6 (lower is better)
Translates to: SLFSERKGSLRS*PRTFWENSSRS
Trigger: GCTCCTAGACGAGTTTTCCCAGAACGTCCTGGGTCAGCTCCTGAGTGACCCTTTCCTCTCAGAGAAGAGCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS GCA 72 bp ATGGTCAGAGTGACAGAAGGGACAAGTCCCGGGGGCTaGTCCTCTGTGATTGGCTCTGTCTTGATGGTAGCT +
Preference number: 6 (lower is better)
Translates to: MVRVTEGTSPGG*SSVIGSVLMVA
Trigger: AGCTACCATCAAGACAGAGCCAATCACAGAGGAGCAGCCCCCGGGACTTGTCCCTTCTGTCACTCTGACCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CCA 72 bp TCTCCTCAGATTTTGTCAGAGGCAGCTTGGTGGGAATaGGATAGCCCTCGGCAACCAGGGTCCTCTTCTCCT +
Preference number: 6 (lower is better)
Translates to: SPQILSEAAWWE*DSPRQPGSSSP
Trigger: AGGAGAAGAGGACCCTGGTTGCCGAGGGCTATCCCATTCCCACCAAGCTGCCTCTGACAAAATCTGAGGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CCA 72 bp CTGACAGAGGATGCTGGCTGGGCAGAGCCATCTTGGTaGCAGAAGGATAAGGCCCATAGCCTTGAAAGAAGC +
Preference number: 6 (lower is better)
Translates to: LTEDAGWAEPSW*QKDKAHSLERS
Trigger: GCTTCTTTCAAGGCTATGGGCCTTATCCTTCTGCCACCAAGATGGCTCTGCCCAGCCAGCATCCTCTGTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CAA 72 bp GAGGCGCTGGTGATGTTGGAGATGGCTCCACCTCCATaGACTCGCTCTTCTCTGAGAGGAAAGGGTCACTCA +
Preference number: 6 (lower is better)
Translates to: EALVMLEMAPPP*TRSSLRGKGHS
Trigger: TGAGTGACCCTTTCCTCTCAGAGAAGAGCGAGTCAATGGAGGTGGAGCCATCTCCAACATCACCAGCGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CAA 90 bp GGTTCGAGAGACCTTCCCCATCACCAAAGTCTGAAGCTTCTGAAGTaGCTGAAGGAGAGTCCTATTGGTGTTCTCCAGCACCTCCACCTT +
Preference number: 6 (lower is better)
Translates to: GSRDLPHHQSLKLLK*LKESPIGVLQHLHL
Trigger: AAGGTGGAGGTGCTGGAGAACACCAATAGGACTCTCCTTCAGCAACTTCAGAAGCTTCAGACTTTGGTGATGGGGAAGGTCTCTCGAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CAA 90 bp GCTGGGCAGAGCCATCTTGGTGGCAGAAGGATAAGGCCCATAGCCTaGAAAGAAGCTTCCAAATGCAACAGCAAAGCAAAGCACAACGAC +
Preference number: 6 (lower is better)
Translates to: AGQSHLGGRRIRPIA*KEASKCNSKAKHND
Trigger: GTCGTTGTGCTTTGCTTTGCTGTTGCATTTGGAAGCTTCTTTCAAGGCTATGGGCCTTATCCTTCTGCCACCAAGATGGCTCTGCCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CAA 72 bp GACAGGTACCATTTTTCACTCTCCACCTCCTCGTCATaGAAGCTGTCGCTGGTAGCCGCATGGGTAAATGGT +
Preference number: 6 (lower is better)
Translates to: DRYHFSLSTSSS*KLSLVAAWVNG
Trigger: ACCATTTACCCATGCGGCTACCAGCGACAGCTTCAATGACGAGGAGGTGGAGAGTGAAAAATGGTACCTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 72 bp TCCACGGAGGCTTCTTTCGGGGAGAAGTTTAAGAACTaGTCCACTTCGTGCGGCTCCAGCTTAATCTTAGGA +
Preference number: 6 (lower is better)
Translates to: STEASFGEKFKN*STSCGSSLILG
Trigger: TCCTAAGATTAAGCTGGAGCCGCACGAAGTGGATCAGTTCTTAAACTTCTCCCCGAAAGAAGCCTCCGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS CAA 72 bp GACCTTCCCCATCACCAAAGTCTGAAGCTTCTGAAGTaGCTGAAGGAGAGTCCTATTGGTGTTCTCCAGCAC +
Preference number: 6 (lower is better)
Translates to: DLPHHQSLKLLK*LKESPIGVLQH
Trigger: GTGCTGGAGAACACCAATAGGACTCTCCTTCAGCAACTTCAGAAGCTTCAGACTTTGGTGATGGGGAAGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6
CDS TCA 72 bp CTGCTCCTCTGTGATTGGCTCTGTCTTGATGGTAGCTaGAGGAAACTCTGTAGACAGGTACCATTTTTCACT +
Preference number: 6 (lower is better)
Translates to: LLLCDWLCLDGS*RKLCRQVPFFT
Trigger: AGTGAAAAATGGTACCTGTCTACAGAGTTTCCTTCAGCTACCATCAAGACAGAGCCAATCACAGAGGAGCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041093.6