RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CREB3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028466

Ensembl transcript IDs: ENSMUST00000102944.11, ENSMUST00000167751.2

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GAACCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCACTGCTCCTTTTTATTTaGATACAGACAGGAGTCCTC +
Preference number: 2 (lower is better)
Translates to: EPLIYFLPYPVLPWMKYSLLLFI*IQTGVL
Trigger: GAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAG...TGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGGTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
3UTR-3UTR CAA 90 bp ACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAAGGCCCCTGCTCCTTTTTATTaGAATACAGACAGGAGTCCT +
Preference number: 3 (lower is better)
Translates to: TYLFLTLPSPSMDEVFKAPAPFY*NTDRSP
Trigger: AGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGG...GGCCTTGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
3UTR CCA 72 bp CCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATaGATGAAGTATTCAAGGCCAGTAAATGTCTCCAAA +
Preference number: 3 (lower is better)
Translates to: PLIYFLPYPVLP*MKYSRPVNVSK
Trigger: TTTGGAGACATTTACTGGCCTTGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR CCA 90 bp TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGATGATCGTCCTCGCTaGGGAGGGCACGAAGCTTGC +
Preference number: 4 (lower is better)
Translates to: SEFLGILTEHVSKGQLSPDDRPR*GGHEAC
Trigger: GCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATC...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR TCA 90 bp TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTACCTGCCCTGAAAGATaGCCAAAGAAGGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: SEFLGILTEHVSKGQLSPTCPER*PKKGCG
Trigger: ACCACAGCCCTTCTTTGGTCATCTTTCAGGGCAGGT...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR TCA 90 bp TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTTGCAGCTCCCGATTCTaGGCTGTGTATTTCAAGACC +
Preference number: 4 (lower is better)
Translates to: SEFLGILTEHVSKGQLSPCSSRF*AVYFKT
Trigger: GGTCTTGAAATACACAGCTCAGAATCGGGAGCTGCA...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR GCA 90 bp TGTGGTGTGTCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGTCTGAAAGGTTTGCCTaGAGGAGAAGGTTGGAGTCG +
Preference number: 4 (lower is better)
Translates to: CGVSEFLGILTEHVSKGQSERFA*RRRLES
Trigger: CGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGA...CTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGACACACCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR GCA 90 bp TCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCCTCAGGCTGAGGACACCCCAGTGACTGGTGTGTaGTGTCCATGGGTAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SPAPFYLNTDRSPQAEDTPVTGV*CPWVAL
Trigger: CAGAGCTACCCATGGACAGCACACACCAGTCACTGG...GGTGTCCTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR CCA 90 bp CATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTAGAAAGATCCCAGAGTaGCCAGTGCAGGGGCTGCTC +
Preference number: 4 (lower is better)
Translates to: HPNRAREQRPAFPCSFLFRKIPE*PVQGLL
Trigger: GAGCAGCCCCTGCACTGGCCACTCTGGGATCTTTCT...AAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
3UTR CAA 72 bp GTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTaGAATACAGACAGGAGTCCTCAGGCTGAGGACACC +
Preference number: 4 (lower is better)
Translates to: VSKGQLSPAPFY*NTDRSPQAEDT
Trigger: GGTGTCCTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR GCA 90 bp CATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTTGTTCCTCCAAACGCTaGACCTTGTTCTGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: HPNRAREQRPAFPCSFLFCSSKR*TLFCSS
Trigger: GGAGCTGCAGAACAAGGTGCAGCGTTTGGAGGAACA...AAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR CCA 90 bp TGTGGTGTGTCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTATCTCAATCACCATaGCTTGAAGCTTCCTCAGTT +
Preference number: 4 (lower is better)
Translates to: CGVSEFLGILTEHVSKGQLSQSP*LEASSV
Trigger: AACTGAGGAAGCTTCAAGCCATGGTGATTGAGATAG...CTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGACACACCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR TCA 90 bp ACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAAGGCCGGGTTGAGGGCAGAGTaGGCCCCTCCTTCTCCAAGA +
Preference number: 4 (lower is better)
Translates to: TYLFLTLPSPSMDEVFKAGLRAE*APPSPR
Trigger: TCTTGGAGAAGGAGGGGCTCACTCTGCCCTCAACCC...GGCCTTGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR GCA 90 bp ACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGGGCACACTTCCCCTTaGATCAGAGGAGTACATAGC +
Preference number: 4 (lower is better)
Translates to: TEHVSKGQLSPAPFYLNTGHTSP*IRGVHS
Trigger: GCTATGTACTCCTCTGATGCAAGGGGAAGTGTGCCC...TGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR GCA 90 bp TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGTACACAGGAAAAGTTaGTGGAGACCAAGAACATAT +
Preference number: 4 (lower is better)
Translates to: SEFLGILTEHVSKGQLSPVHRKS*WRPRTY
Trigger: ATATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTAC...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR CCA 90 bp ACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGGAGAATGGAAGAGCTaGAAGAGCCGAGAACATCCC +
Preference number: 4 (lower is better)
Translates to: TEHVSKGQLSPAPFYLNTGEWKS*KSREHP
Trigger: GGGATGTTCTCGGCTCTTCCAGCTCTTCCATTCTCC...TGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR TCA 90 bp GGAACCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAAGCCCAGCAGGTCCTaGTCACCGGGATCCAAAGCT +
Preference number: 4 (lower is better)
Translates to: GTTYLFLTLPSPSMDEVFKPSRS*SPGSKA
Trigger: AGCTTTGGATCCCGGTGATCAGGACCTGCTGGGCTT...GAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGGTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR TCA 90 bp ACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAAGGCCCCATCCCTCGCTTTCTaGAAGGTTTGCCTGCAGGAG +
Preference number: 4 (lower is better)
Translates to: TYLFLTLPSPSMDEVFKAPSLAF*KVCLQE
Trigger: CTCCTGCAGGCAAACCTTTCAGAAAGCGAGGGATGG...GGCCTTGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR TCA 90 bp GAACCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAGGAGAAGAGCATCTCTaGAGAAAGATCCCAGAGTGG +
Preference number: 4 (lower is better)
Translates to: EPLIYFLPYPVLPWMKYSGEEHL*RKIPEW
Trigger: CCACTCTGGGATCTTTCTTCAGAGATGCTCTTCTCC...TGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGGTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR CCA 90 bp GTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCACAGGAAAAGTTGCTaGAGACCAAGAACATATGTT +
Preference number: 4 (lower is better)
Translates to: VSKGQLSPAPFYLNTDRSHRKSC*RPRTYV
Trigger: AACATATGTTCTTGGTCTCCAGCAACTTTTCCTGTG...ACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR CCA 90 bp GAACCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCACGCTGCTGGTTTTGTTaGCTATCTCAATCACCATGG +
Preference number: 4 (lower is better)
Translates to: EPLIYFLPYPVLPWMKYSRCWFC*LSQSPW
Trigger: CCATGGTGATTGAGATAGCCAACAAAACCAGCAGCG...TGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS GCA 90 bp ATGGCTTCGGCTGATGATCGTCCTCGCTGGGGAGGGCACGAAGCTTaGGGTGCAACACAACATACTCCGCGGGCACACTTCCCCTTGCAT +
Preference number: 5 (lower is better)
Translates to: MASADDRPRWGGHEA*GATQHTPRAHFPLH
Trigger: ATGCAAGGGGAAGTGTGCCCGCGGAGTATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATCAGCCGAAGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 90 bp GCTCTGACGATAGAGCAGATGGCTTCGGCTGATGATCGTCCTCGCTaGGGAGGGCACGAAGCTTGCGGTGCAACACAACATACTCCGCGG +
Preference number: 5 (lower is better)
Translates to: ALTIEQMASADDRPR*GGHEACGATQHTPR
Trigger: CCGCGGAGTATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATCAGCCGAAGCCATCTGCTCTATCGTCAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS TCA 90 bp TCTGAAGAAAGATCCCAGAGTGGCCAGTGCAGGGGCTGCTCTGCCTaGGGCGCGTGGTACAGTACACAGGAAAAGTTGCTGGAGACCAAG +
Preference number: 5 (lower is better)
Translates to: SEERSQSGQCRGCSA*GAWYSTQEKLLETK
Trigger: CTTGGTCTCCAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGCCCCTGCACTGGCCACTCTGGGATCTTTCTTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS TCA 90 bp AAGGTTTGCCTGCAGGAGAAGGTTGGAGTCGGAGAAGAGCATCTCTaGAGAAAGATCCCAGAGTGGCCAGTGCAGGGGCTGCTCTGCCTG +
Preference number: 5 (lower is better)
Translates to: KVCLQEKVGVGEEHL*RKIPEWPVQGLLCL
Trigger: CAGGCAGAGCAGCCCCTGCACTGGCCACTCTGGGATCTTTCTTCAGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS-3UTR CAA 90 bp TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCCTGCAGGAGAAGGTaGGAGTCGGAGAAGAGCATC +
Preference number: 5 (lower is better)
Translates to: SEFLGILTEHVSKGQLSPACRRR*ESEKSI
Trigger: GATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGC...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS GCA 90 bp AGCAGAGAGCTCAGTAAATCCTCTACCTCCCAGTCGCTCAGTTCTTaGACGGAGTTCTCGGAAGGTGACAGCTCTAAGTCCAGCGGAGCC +
Preference number: 5 (lower is better)
Translates to: SRELSKSSTSQSLSS*TEFSEGDSSKSSGA
Trigger: GGCTCCGCTGGACTTAGAGCTGTCACCTTCCGAGAACTCCGTGCAAGAACTGAGCGACTGGGAGGTAGAGGATTTACTGAGCTCTCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS TCA 90 bp TGGAAGAGCTGGAAGAGCCGAGAACATCCCGCGATACTGAGGGACTaGGCAGAGAGCTCAGTAAATCCTCTACCTCCCAGTCGCTCAGTT +
Preference number: 5 (lower is better)
Translates to: WKSWKSREHPAILRD*AESSVNPLPPSRSV
Trigger: AACTGAGCGACTGGGAGGTAGAGGATTTACTGAGCTCTCTGCTCAGTCCCTCAGTATCGCGGGATGTTCTCGGCTCTTCCAGCTCTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 90 bp AAGCTTGCGGTGCAACACAACATACTCCGCGGGCACACTTCCCCTTaGATCAGAGGAGTACATAGCGGGTACCAGGAGAAGACAGAAGGA +
Preference number: 5 (lower is better)
Translates to: KLAVQHNILRGHTSP*IRGVHSGYQEKTEG
Trigger: TCCTTCTGTCTTCTCCTGGTACCCGCTATGTACTCCTCTGATGCAAGGGGAAGTGTGCCCGCGGAGTATGTTGTGTTGCACCGCAAGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 90 bp GGGGCTGCTCTGCCTGAGGCGCGTGGTACAGTACACAGGAAAAGTTaGTGGAGACCAAGAACATATGTTCTGAGCTGTCCAGTGACTGGT +
Preference number: 5 (lower is better)
Translates to: GAALPEARGTVHRKS*WRPRTYVLSCPVTG
Trigger: ACCAGTCACTGGACAGCTCAGAACATATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 90 bp GCTGCTCTGCCTGAGGCGCGTGGTACAGTACACAGGAAAAGTTGCTaGAGACCAAGAACATATGTTCTGAGCTGTCCAGTGACTGGTGTG +
Preference number: 5 (lower is better)
Translates to: AALPEARGTVHRKSC*RPRTYVLSCPVTGV
Trigger: CACACCAGTCACTGGACAGCTCAGAACATATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 90 bp GTTGCCATCCCTCGCTTTCTGAAAGGTTTGCCTGCAGGAGAAGGTTaGAGTCGGAGAAGAGCATCTCTGAAGAAAGATCCCAGAGTGGCC +
Preference number: 5 (lower is better)
Translates to: VAIPRFLKGLPAGEG*SRRRASLKKDPRVA
Trigger: GGCCACTCTGGGATCTTTCTTCAGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCGAGGGATGGCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 90 bp TGGAGACCAAGAACATATGTTCTGAGCTGTCCAGTGACTGGTGTGTaGTGTCCATGGGTAGCTCTGACGATAGAGCAGATGGCTTCGGCT +
Preference number: 5 (lower is better)
Translates to: WRPRTYVLSCPVTGV*CPWVALTIEQMASA
Trigger: AGCCGAAGCCATCTGCTCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAACATATGTTCTTGGTCTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS-3UTR CAA 90 bp CAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCCTCAGGCTGAGGGGAGGGCACGAAGCTaGCGGTGCAACACAACATAC +
Preference number: 5 (lower is better)
Translates to: QLSPAPFYLNTDRSPQAEGRARS*RCNTTY
Trigger: GTATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCC...CTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS GCA 90 bp GAAGACAGAAGGAGAACACGAGGACCAGAACACAAGTGCTGCCGCTaGTGGTTTTGTTGGCTATCTCAATCACCATGGCTTGAAGCTTCC +
Preference number: 5 (lower is better)
Translates to: EDRRRTRGPEHKCCR*WFCWLSQSPWLEAS
Trigger: GGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 90 bp CCAGGAGAAGACAGAAGGAGAACACGAGGACCAGAACACAAGTGCTaGCGCTGCTGGTTTTGTTGGCTATCTCAATCACCATGGCTTGAA +
Preference number: 5 (lower is better)
Translates to: PGEDRRRTRGPEHKC*RCWFCWLSQSPWLE
Trigger: TTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTCTTCTCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 90 bp GTACCAGGAGAAGACAGAAGGAGAACACGAGGACCAGAACACAAGTaGTGCCGCTGCTGGTTTTGTTGGCTATCTCAATCACCATGGCTT +
Preference number: 5 (lower is better)
Translates to: VPGEDRRRTRGPEHK*CRCWFCWLSQSPWL
Trigger: AAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTCTTCTCCTGGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 90 bp GACAGAAGGAGAACACGAGGACCAGAACACAAGTGCTGCCGCTGCTaGTTTTGTTGGCTATCTCAATCACCATGGCTTGAAGCTTCCTCA +
Preference number: 5 (lower is better)
Translates to: DRRRTRGPEHKCCRC*FCWLSQSPWLEASS
Trigger: TGAGGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 90 bp AGAACATATGTTCTGAGCTGTCCAGTGACTGGTGTGTGCTGTCCATaGGTAGCTCTGACGATAGAGCAGATGGCTTCGGCTGATGATCGT +
Preference number: 5 (lower is better)
Translates to: RTYVLSCPVTGVCCP*VALTIEQMASADDR
Trigger: ACGATCATCAGCCGAAGCCATCTGCTCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAACATATGTTCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS-3UTR CAA 90 bp TCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCCTCAGGCTGAGGACACCCCGCTGCTGGTTTTGTaGGCTATCTCAATCACCATG +
Preference number: 5 (lower is better)
Translates to: SPAPFYLNTDRSPQAEDTPLLVL*AISITM
Trigger: CATGGTGATTGAGATAGCCAACAAAACCAGCAGCGG...GGTGTCCTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR CAA 90 bp CATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTCGCTTTCTGAAAGGTTaGCCTGCAGGAGAAGGTTGG +
Preference number: 5 (lower is better)
Translates to: HPNRAREQRPAFPCSFLFRFLKG*PAGEGW
Trigger: CCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCG...AAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS CCA 90 bp AGAACACGAGGACCAGAACACAAGTGCTGCCGCTGCTGGTTTTGTTaGCTATCTCAATCACCATGGCTTGAAGCTTCCTCAGTTGATCTA +
Preference number: 5 (lower is better)
Translates to: RTRGPEHKCCRCWFC*LSQSPWLEASSVDL
Trigger: TAGATCAACTGAGGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS-3UTR CAA 90 bp ATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGCTTCTTGCGGCTTTCTaGAGCTGCTCTCTTGTTACG +
Preference number: 5 (lower is better)
Translates to: ILTEHVSKGQLSPAPFYLLLAAF*SCSLVT
Trigger: CGTAACAAGAGAGCAGCTCAAGAAAGCCGCAAGAAG...CAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS-3UTR CAA 90 bp GTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCTGCCGCTGCTGGTTTaGTTGGCTATCTCAATCACC +
Preference number: 5 (lower is better)
Translates to: VSKGQLSPAPFYLNTDRSLPLLV*LAISIT
Trigger: GGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAG...ACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS CCA 90 bp CACAAGTGCTGCCGCTGCTGGTTTTGTTGGCTATCTCAATCACCATaGCTTGAAGCTTCCTCAGTTGATCTAGAAGGGACAGATTCTGTT +
Preference number: 5 (lower is better)
Translates to: HKCCRCWFCWLSQSP*LEASSVDLEGTDSV
Trigger: AACAGAATCTGTCCCTTCTAGATCAACTGAGGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 90 bp GCTCTCTCCTCCCACAACTTATCATTTCACACTCACCTAGATCTATaGAGACGTGCTCCTGTGGAAGGGAGTAGTTGTGATCATGGAGAA +
Preference number: 5 (lower is better)
Translates to: ALSSHNLSFHTHLDL*RRAPVEGSSCDHGE
Trigger: TTCTCCATGATCACAACTACTCCCTTCCACAGGAGCACGTCTCCATAGATCTAGGTGAGTGTGAAATGATAAGTTGTGGGAGGAGAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000167751.2
CDS-3UTR CAA 90 bp CAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCCTCAGGCTGAGAGTACACAGGAAAAGTaGCTGGAGACCAAGAACATA +
Preference number: 5 (lower is better)
Translates to: QLSPAPFYLNTDRSPQAESTQEK*LETKNI
Trigger: TATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTACT...CTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS GCA 72 bp GCTGATGATCGTCCTCGCTGGGGAGGGCACGAAGCTTaGGGTGCAACACAACATACTCCGCGGGCACACTTC +
Preference number: 6 (lower is better)
Translates to: ADDRPRWGGHEA*GATQHTPRAHF
Trigger: GAAGTGTGCCCGCGGAGTATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS TCA 72 bp AGATCCCAGAGTGGCCAGTGCAGGGGCTGCTCTGCCTaGGGCGCGTGGTACAGTACACAGGAAAAGTTGCTG +
Preference number: 6 (lower is better)
Translates to: RSQSGQCRGCSA*GAWYSTQEKLL
Trigger: CAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGCCCCTGCACTGGCCACTCTGGGATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 72 bp CTCGGTCAGTATCAGCCTAGACATCTCCTGTTCCGCTaGTCTTTCCTCCCCTGGCAGTGGAGTCACGTGGAA +
Preference number: 6 (lower is better)
Translates to: LGQYQPRHLLFR*SFLPWQWSHVE
Trigger: TTCCACGTGACTCCACTGCCAGGGGAGGAAAGAGCAGCGGAACAGGAGATGTCTAGGCTGATACTGACCGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 72 bp AGAAAGATCCCAGAGTGGCCAGTGCAGGGGCTGCTCTaGCTGAGGCGCGTGGTACAGTACACAGGAAAAGTT +
Preference number: 6 (lower is better)
Translates to: RKIPEWPVQGLL*LRRVVQYTGKV
Trigger: AACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGCCCCTGCACTGGCCACTCTGGGATCTTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 72 bp ATAGAGCAGATGGCTTCGGCTGATGATCGTCCTCGCTaGGGAGGGCACGAAGCTTGCGGTGCAACACAACAT +
Preference number: 6 (lower is better)
Translates to: IEQMASADDRPR*GGHEACGATQH
Trigger: ATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATCAGCCGAAGCCATCTGCTCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 72 bp GTGCAACACAACATACTCCGCGGGCACACTTCCCCTTaGATCAGAGGAGTACATAGCGGGTACCAGGAGAAG +
Preference number: 6 (lower is better)
Translates to: VQHNILRGHTSP*IRGVHSGYQEK
Trigger: CTTCTCCTGGTACCCGCTATGTACTCCTCTGATGCAAGGGGAAGTGTGCCCGCGGAGTATGTTGTGTTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 72 bp GTTCTGAGCTGTCCAGTGACTGGTGTGTGCTGTCCATaGGTAGCTCTGACGATAGAGCAGATGGCTTCGGCT +
Preference number: 6 (lower is better)
Translates to: VLSCPVTGVCCP*VALTIEQMASA
Trigger: AGCCGAAGCCATCTGCTCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS TCA 72 bp TGGAAGAGCCGAGAACATCCCGCGATACTGAGGGACTaGGCAGAGAGCTCAGTAAATCCTCTACCTCCCAGT +
Preference number: 6 (lower is better)
Translates to: WKSREHPAILRD*AESSVNPLPPS
Trigger: ACTGGGAGGTAGAGGATTTACTGAGCTCTCTGCTCAGTCCCTCAGTATCGCGGGATGTTCTCGGCTCTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CAA 90 bp GGTTGCCATCCCTCGCTTTCTGAAAGGTTTGCCTGCAGGAGAAGGTaGGAGTCGGAGAAGAGCATCTCTGAAGAAAGATCCCAGAGTGGC +
Preference number: 6 (lower is better)
Translates to: GCHPSLSERFACRRR*ESEKSISEERSQSG
Trigger: GCCACTCTGGGATCTTTCTTCAGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCGAGGGATGGCAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 72 bp CTCAGTAAATCCTCTACCTCCCAGTCGCTCAGTTCTTaGACGGAGTTCTCGGAAGGTGACAGCTCTAAGTCC +
Preference number: 6 (lower is better)
Translates to: LSKSSTSQSLSS*TEFSEGDSSKS
Trigger: GGACTTAGAGCTGTCACCTTCCGAGAACTCCGTGCAAGAACTGAGCGACTGGGAGGTAGAGGATTTACTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 72 bp GAAGGGAGTAGTTGTGATCATGGAGAATGGAAGAGCTaGAAGAGCCGAGAACATCCCGCGATACTGAGGGAC +
Preference number: 6 (lower is better)
Translates to: EGSSCDHGEWKS*KSREHPAILRD
Trigger: GTCCCTCAGTATCGCGGGATGTTCTCGGCTCTTCCAGCTCTTCCATTCTCCATGATCACAACTACTCCCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 72 bp GCTCCTGTGGAAGGGAGTAGTTGTGATCATGGAGAATaGAAGAGCTGGAAGAGCCGAGAACATCCCGCGATA +
Preference number: 6 (lower is better)
Translates to: APVEGSSCDHGE*KSWKSREHPAI
Trigger: TATCGCGGGATGTTCTCGGCTCTTCCAGCTCTTCCATTCTCCATGATCACAACTACTCCCTTCCACAGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 72 bp AGGAGAACACGAGGACCAGAACACAAGTGCTGCCGCTaGTGGTTTTGTTGGCTATCTCAATCACCATGGCTT +
Preference number: 6 (lower is better)
Translates to: RRTRGPEHKCCR*WFCWLSQSPWL
Trigger: AAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 72 bp TTAGGTTGCCATCCCTCGCTTTCTGAAAGGTTTGCCTaGAGGAGAAGGTTGGAGTCGGAGAAGAGCATCTCT +
Preference number: 6 (lower is better)
Translates to: LGCHPSLSERFA*RRRLESEKSIS
Trigger: AGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCGAGGGATGGCAACCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 72 bp CCTGAGGCGCGTGGTACAGTACACAGGAAAAGTTGCTaGAGACCAAGAACATATGTTCTGAGCTGTCCAGTG +
Preference number: 6 (lower is better)
Translates to: PEARGTVHRKSC*RPRTYVLSCPV
Trigger: CACTGGACAGCTCAGAACATATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 72 bp CCTCGCTTTCTGAAAGGTTTGCCTGCAGGAGAAGGTTaGAGTCGGAGAAGAGCATCTCTGAAGAAAGATCCC +
Preference number: 6 (lower is better)
Translates to: PRFLKGLPAGEG*SRRRASLKKDP
Trigger: GGGATCTTTCTTCAGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 72 bp GAAGACAGAAGGAGAACACGAGGACCAGAACACAAGTaGTGCCGCTGCTGGTTTTGTTGGCTATCTCAATCA +
Preference number: 6 (lower is better)
Translates to: EDRRRTRGPEHK*CRCWFCWLSQS
Trigger: TGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS GCA 72 bp AGAACATATGTTCTGAGCTGTCCAGTGACTGGTGTGTaGTGTCCATGGGTAGCTCTGACGATAGAGCAGATG +
Preference number: 6 (lower is better)
Translates to: RTYVLSCPVTGV*CPWVALTIEQM
Trigger: CATCTGCTCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAACATATGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 72 bp AGAACACGAGGACCAGAACACAAGTGCTGCCGCTGCTaGTTTTGTTGGCTATCTCAATCACCATGGCTTGAA +
Preference number: 6 (lower is better)
Translates to: RTRGPEHKCCRC*FCWLSQSPWLE
Trigger: TTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 72 bp GAGACCAAGAACATATGTTCTGAGCTGTCCAGTGACTaGTGTGTGCTGTCCATGGGTAGCTCTGACGATAGA +
Preference number: 6 (lower is better)
Translates to: ETKNICSELSSD*CVLSMGSSDDR
Trigger: TCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAACATATGTTCTTGGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2
CDS CCA 72 bp ACCCCTCCTTTTCGAAGCTCTCAGTATCTAGATCTATaGAGACGTGCTCCTGTGGAAGGGAGTAGTTGTGAT +
Preference number: 6 (lower is better)
Translates to: TPPFRSSQYLDL*RRAPVEGSSCD
Trigger: ATCACAACTACTCCCTTCCACAGGAGCACGTCTCCATAGATCTAGATACTGAGAGCTTCGAAAAGGAGGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102944.11
CDS CCA 72 bp TGCCGCTGCTGGTTTTGTTGGCTATCTCAATCACCATaGCTTGAAGCTTCCTCAGTTGATCTAGAAGGGACA +
Preference number: 6 (lower is better)
Translates to: CRCWFCWLSQSP*LEASSVDLEGT
Trigger: TGTCCCTTCTAGATCAACTGAGGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102944.11
ENSMUST00000167751.2