Pregenerated sensors for CREB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028466Ensembl transcript IDs: ENSMUST00000102944.11, ENSMUST00000167751.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR TCA 90 bp | GAACCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCACTGCTCCTTTTTATTTaGATACAGACAGGAGTCCTC | + |
Preference number: 2 (lower is better) Translates to: EPLIYFLPYPVLPWMKYSLLLFI*IQTGVL Trigger: GAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAG...TGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGGTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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3UTR-3UTR CAA 90 bp | ACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAAGGCCCCTGCTCCTTTTTATTaGAATACAGACAGGAGTCCT | + |
Preference number: 3 (lower is better) Translates to: TYLFLTLPSPSMDEVFKAPAPFY*NTDRSP Trigger: AGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGG...GGCCTTGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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3UTR CCA 72 bp | CCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATaGATGAAGTATTCAAGGCCAGTAAATGTCTCCAAA | + |
Preference number: 3 (lower is better) Translates to: PLIYFLPYPVLP*MKYSRPVNVSK Trigger: TTTGGAGACATTTACTGGCCTTGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR CCA 90 bp | TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGATGATCGTCCTCGCTaGGGAGGGCACGAAGCTTGC | + |
Preference number: 4 (lower is better) Translates to: SEFLGILTEHVSKGQLSPDDRPR*GGHEAC Trigger: GCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATC...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR TCA 90 bp | TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTACCTGCCCTGAAAGATaGCCAAAGAAGGGCTGTGGT | + |
Preference number: 4 (lower is better) Translates to: SEFLGILTEHVSKGQLSPTCPER*PKKGCG Trigger: ACCACAGCCCTTCTTTGGTCATCTTTCAGGGCAGGT...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR TCA 90 bp | TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTTGCAGCTCCCGATTCTaGGCTGTGTATTTCAAGACC | + |
Preference number: 4 (lower is better) Translates to: SEFLGILTEHVSKGQLSPCSSRF*AVYFKT Trigger: GGTCTTGAAATACACAGCTCAGAATCGGGAGCTGCA...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR GCA 90 bp | TGTGGTGTGTCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGTCTGAAAGGTTTGCCTaGAGGAGAAGGTTGGAGTCG | + |
Preference number: 4 (lower is better) Translates to: CGVSEFLGILTEHVSKGQSERFA*RRRLES Trigger: CGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGA...CTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGACACACCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR GCA 90 bp | TCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCCTCAGGCTGAGGACACCCCAGTGACTGGTGTGTaGTGTCCATGGGTAGCTCTG | + |
Preference number: 4 (lower is better) Translates to: SPAPFYLNTDRSPQAEDTPVTGV*CPWVAL Trigger: CAGAGCTACCCATGGACAGCACACACCAGTCACTGG...GGTGTCCTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR CCA 90 bp | CATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTAGAAAGATCCCAGAGTaGCCAGTGCAGGGGCTGCTC | + |
Preference number: 4 (lower is better) Translates to: HPNRAREQRPAFPCSFLFRKIPE*PVQGLL Trigger: GAGCAGCCCCTGCACTGGCCACTCTGGGATCTTTCT...AAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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3UTR CAA 72 bp | GTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTaGAATACAGACAGGAGTCCTCAGGCTGAGGACACC | + |
Preference number: 4 (lower is better) Translates to: VSKGQLSPAPFY*NTDRSPQAEDT Trigger: GGTGTCCTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR GCA 90 bp | CATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTTGTTCCTCCAAACGCTaGACCTTGTTCTGCAGCTCC | + |
Preference number: 4 (lower is better) Translates to: HPNRAREQRPAFPCSFLFCSSKR*TLFCSS Trigger: GGAGCTGCAGAACAAGGTGCAGCGTTTGGAGGAACA...AAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR CCA 90 bp | TGTGGTGTGTCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTATCTCAATCACCATaGCTTGAAGCTTCCTCAGTT | + |
Preference number: 4 (lower is better) Translates to: CGVSEFLGILTEHVSKGQLSQSP*LEASSV Trigger: AACTGAGGAAGCTTCAAGCCATGGTGATTGAGATAG...CTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGACACACCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR TCA 90 bp | ACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAAGGCCGGGTTGAGGGCAGAGTaGGCCCCTCCTTCTCCAAGA | + |
Preference number: 4 (lower is better) Translates to: TYLFLTLPSPSMDEVFKAGLRAE*APPSPR Trigger: TCTTGGAGAAGGAGGGGCTCACTCTGCCCTCAACCC...GGCCTTGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR GCA 90 bp | ACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGGGCACACTTCCCCTTaGATCAGAGGAGTACATAGC | + |
Preference number: 4 (lower is better) Translates to: TEHVSKGQLSPAPFYLNTGHTSP*IRGVHS Trigger: GCTATGTACTCCTCTGATGCAAGGGGAAGTGTGCCC...TGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR GCA 90 bp | TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGTACACAGGAAAAGTTaGTGGAGACCAAGAACATAT | + |
Preference number: 4 (lower is better) Translates to: SEFLGILTEHVSKGQLSPVHRKS*WRPRTY Trigger: ATATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTAC...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR CCA 90 bp | ACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGGAGAATGGAAGAGCTaGAAGAGCCGAGAACATCCC | + |
Preference number: 4 (lower is better) Translates to: TEHVSKGQLSPAPFYLNTGEWKS*KSREHP Trigger: GGGATGTTCTCGGCTCTTCCAGCTCTTCCATTCTCC...TGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR TCA 90 bp | GGAACCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAAGCCCAGCAGGTCCTaGTCACCGGGATCCAAAGCT | + |
Preference number: 4 (lower is better) Translates to: GTTYLFLTLPSPSMDEVFKPSRS*SPGSKA Trigger: AGCTTTGGATCCCGGTGATCAGGACCTGCTGGGCTT...GAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGGTTCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR TCA 90 bp | ACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAAGGCCCCATCCCTCGCTTTCTaGAAGGTTTGCCTGCAGGAG | + |
Preference number: 4 (lower is better) Translates to: TYLFLTLPSPSMDEVFKAPSLAF*KVCLQE Trigger: CTCCTGCAGGCAAACCTTTCAGAAAGCGAGGGATGG...GGCCTTGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR TCA 90 bp | GAACCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCAGGAGAAGAGCATCTCTaGAGAAAGATCCCAGAGTGG | + |
Preference number: 4 (lower is better) Translates to: EPLIYFLPYPVLPWMKYSGEEHL*RKIPEW Trigger: CCACTCTGGGATCTTTCTTCAGAGATGCTCTTCTCC...TGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR CCA 90 bp | GTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCACAGGAAAAGTTGCTaGAGACCAAGAACATATGTT | + |
Preference number: 4 (lower is better) Translates to: VSKGQLSPAPFYLNTDRSHRKSC*RPRTYV Trigger: AACATATGTTCTTGGTCTCCAGCAACTTTTCCTGTG...ACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR CCA 90 bp | GAACCACTTATTTATTTCTTACCCTACCCAGTCCTTCCATGGATGAAGTATTCACGCTGCTGGTTTTGTTaGCTATCTCAATCACCATGG | + |
Preference number: 4 (lower is better) Translates to: EPLIYFLPYPVLPWMKYSRCWFC*LSQSPW Trigger: CCATGGTGATTGAGATAGCCAACAAAACCAGCAGCG...TGAATACTTCATCCATGGAAGGACTGGGTAGGGTAAGAAATAAATAAGTGGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS GCA 90 bp | ATGGCTTCGGCTGATGATCGTCCTCGCTGGGGAGGGCACGAAGCTTaGGGTGCAACACAACATACTCCGCGGGCACACTTCCCCTTGCAT | + |
Preference number: 5 (lower is better) Translates to: MASADDRPRWGGHEA*GATQHTPRAHFPLH Trigger: ATGCAAGGGGAAGTGTGCCCGCGGAGTATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATCAGCCGAAGCCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 90 bp | GCTCTGACGATAGAGCAGATGGCTTCGGCTGATGATCGTCCTCGCTaGGGAGGGCACGAAGCTTGCGGTGCAACACAACATACTCCGCGG | + |
Preference number: 5 (lower is better) Translates to: ALTIEQMASADDRPR*GGHEACGATQHTPR Trigger: CCGCGGAGTATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATCAGCCGAAGCCATCTGCTCTATCGTCAGAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS TCA 90 bp | TCTGAAGAAAGATCCCAGAGTGGCCAGTGCAGGGGCTGCTCTGCCTaGGGCGCGTGGTACAGTACACAGGAAAAGTTGCTGGAGACCAAG | + |
Preference number: 5 (lower is better) Translates to: SEERSQSGQCRGCSA*GAWYSTQEKLLETK Trigger: CTTGGTCTCCAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGCCCCTGCACTGGCCACTCTGGGATCTTTCTTCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS TCA 90 bp | AAGGTTTGCCTGCAGGAGAAGGTTGGAGTCGGAGAAGAGCATCTCTaGAGAAAGATCCCAGAGTGGCCAGTGCAGGGGCTGCTCTGCCTG | + |
Preference number: 5 (lower is better) Translates to: KVCLQEKVGVGEEHL*RKIPEWPVQGLLCL Trigger: CAGGCAGAGCAGCCCCTGCACTGGCCACTCTGGGATCTTTCTTCAGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS-3UTR CAA 90 bp | TCTGAGTTCCTGGGCATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCCTGCAGGAGAAGGTaGGAGTCGGAGAAGAGCATC | + |
Preference number: 5 (lower is better) Translates to: SEFLGILTEHVSKGQLSPACRRR*ESEKSI Trigger: GATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGC...AGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATGCCCAGGAACTCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS GCA 90 bp | AGCAGAGAGCTCAGTAAATCCTCTACCTCCCAGTCGCTCAGTTCTTaGACGGAGTTCTCGGAAGGTGACAGCTCTAAGTCCAGCGGAGCC | + |
Preference number: 5 (lower is better) Translates to: SRELSKSSTSQSLSS*TEFSEGDSSKSSGA Trigger: GGCTCCGCTGGACTTAGAGCTGTCACCTTCCGAGAACTCCGTGCAAGAACTGAGCGACTGGGAGGTAGAGGATTTACTGAGCTCTCTGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS TCA 90 bp | TGGAAGAGCTGGAAGAGCCGAGAACATCCCGCGATACTGAGGGACTaGGCAGAGAGCTCAGTAAATCCTCTACCTCCCAGTCGCTCAGTT | + |
Preference number: 5 (lower is better) Translates to: WKSWKSREHPAILRD*AESSVNPLPPSRSV Trigger: AACTGAGCGACTGGGAGGTAGAGGATTTACTGAGCTCTCTGCTCAGTCCCTCAGTATCGCGGGATGTTCTCGGCTCTTCCAGCTCTTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 90 bp | AAGCTTGCGGTGCAACACAACATACTCCGCGGGCACACTTCCCCTTaGATCAGAGGAGTACATAGCGGGTACCAGGAGAAGACAGAAGGA | + |
Preference number: 5 (lower is better) Translates to: KLAVQHNILRGHTSP*IRGVHSGYQEKTEG Trigger: TCCTTCTGTCTTCTCCTGGTACCCGCTATGTACTCCTCTGATGCAAGGGGAAGTGTGCCCGCGGAGTATGTTGTGTTGCACCGCAAGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 90 bp | GGGGCTGCTCTGCCTGAGGCGCGTGGTACAGTACACAGGAAAAGTTaGTGGAGACCAAGAACATATGTTCTGAGCTGTCCAGTGACTGGT | + |
Preference number: 5 (lower is better) Translates to: GAALPEARGTVHRKS*WRPRTYVLSCPVTG Trigger: ACCAGTCACTGGACAGCTCAGAACATATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 90 bp | GCTGCTCTGCCTGAGGCGCGTGGTACAGTACACAGGAAAAGTTGCTaGAGACCAAGAACATATGTTCTGAGCTGTCCAGTGACTGGTGTG | + |
Preference number: 5 (lower is better) Translates to: AALPEARGTVHRKSC*RPRTYVLSCPVTGV Trigger: CACACCAGTCACTGGACAGCTCAGAACATATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 90 bp | GTTGCCATCCCTCGCTTTCTGAAAGGTTTGCCTGCAGGAGAAGGTTaGAGTCGGAGAAGAGCATCTCTGAAGAAAGATCCCAGAGTGGCC | + |
Preference number: 5 (lower is better) Translates to: VAIPRFLKGLPAGEG*SRRRASLKKDPRVA Trigger: GGCCACTCTGGGATCTTTCTTCAGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCGAGGGATGGCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 90 bp | TGGAGACCAAGAACATATGTTCTGAGCTGTCCAGTGACTGGTGTGTaGTGTCCATGGGTAGCTCTGACGATAGAGCAGATGGCTTCGGCT | + |
Preference number: 5 (lower is better) Translates to: WRPRTYVLSCPVTGV*CPWVALTIEQMASA Trigger: AGCCGAAGCCATCTGCTCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAACATATGTTCTTGGTCTCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS-3UTR CAA 90 bp | CAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCCTCAGGCTGAGGGGAGGGCACGAAGCTaGCGGTGCAACACAACATAC | + |
Preference number: 5 (lower is better) Translates to: QLSPAPFYLNTDRSPQAEGRARS*RCNTTY Trigger: GTATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCC...CTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS GCA 90 bp | GAAGACAGAAGGAGAACACGAGGACCAGAACACAAGTGCTGCCGCTaGTGGTTTTGTTGGCTATCTCAATCACCATGGCTTGAAGCTTCC | + |
Preference number: 5 (lower is better) Translates to: EDRRRTRGPEHKCCR*WFCWLSQSPWLEAS Trigger: GGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 90 bp | CCAGGAGAAGACAGAAGGAGAACACGAGGACCAGAACACAAGTGCTaGCGCTGCTGGTTTTGTTGGCTATCTCAATCACCATGGCTTGAA | + |
Preference number: 5 (lower is better) Translates to: PGEDRRRTRGPEHKC*RCWFCWLSQSPWLE Trigger: TTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTCTTCTCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 90 bp | GTACCAGGAGAAGACAGAAGGAGAACACGAGGACCAGAACACAAGTaGTGCCGCTGCTGGTTTTGTTGGCTATCTCAATCACCATGGCTT | + |
Preference number: 5 (lower is better) Translates to: VPGEDRRRTRGPEHK*CRCWFCWLSQSPWL Trigger: AAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTCTTCTCCTGGTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 90 bp | GACAGAAGGAGAACACGAGGACCAGAACACAAGTGCTGCCGCTGCTaGTTTTGTTGGCTATCTCAATCACCATGGCTTGAAGCTTCCTCA | + |
Preference number: 5 (lower is better) Translates to: DRRRTRGPEHKCCRC*FCWLSQSPWLEASS Trigger: TGAGGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 90 bp | AGAACATATGTTCTGAGCTGTCCAGTGACTGGTGTGTGCTGTCCATaGGTAGCTCTGACGATAGAGCAGATGGCTTCGGCTGATGATCGT | + |
Preference number: 5 (lower is better) Translates to: RTYVLSCPVTGVCCP*VALTIEQMASADDR Trigger: ACGATCATCAGCCGAAGCCATCTGCTCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAACATATGTTCT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS-3UTR CAA 90 bp | TCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCCTCAGGCTGAGGACACCCCGCTGCTGGTTTTGTaGGCTATCTCAATCACCATG | + |
Preference number: 5 (lower is better) Translates to: SPAPFYLNTDRSPQAEDTPLLVL*AISITM Trigger: CATGGTGATTGAGATAGCCAACAAAACCAGCAGCGG...GGTGTCCTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR CAA 90 bp | CATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTCGCTTTCTGAAAGGTTaGCCTGCAGGAGAAGGTTGG | + |
Preference number: 5 (lower is better) Translates to: HPNRAREQRPAFPCSFLFRFLKG*PAGEGW Trigger: CCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCG...AAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS CCA 90 bp | AGAACACGAGGACCAGAACACAAGTGCTGCCGCTGCTGGTTTTGTTaGCTATCTCAATCACCATGGCTTGAAGCTTCCTCAGTTGATCTA | + |
Preference number: 5 (lower is better) Translates to: RTRGPEHKCCRCWFC*LSQSPWLEASSVDL Trigger: TAGATCAACTGAGGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS-3UTR CAA 90 bp | ATCCTAACAGAGCACGTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGCTTCTTGCGGCTTTCTaGAGCTGCTCTCTTGTTACG | + |
Preference number: 5 (lower is better) Translates to: ILTEHVSKGQLSPAPFYLLLAAF*SCSLVT Trigger: CGTAACAAGAGAGCAGCTCAAGAAAGCCGCAAGAAG...CAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCACGTGCTCTGTTAGGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS-3UTR CAA 90 bp | GTGAGCAAAGGCCAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCTGCCGCTGCTGGTTTaGTTGGCTATCTCAATCACC | + |
Preference number: 5 (lower is better) Translates to: VSKGQLSPAPFYLNTDRSLPLLV*LAISIT Trigger: GGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAG...ACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTGGCCTTTGCTCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS CCA 90 bp | CACAAGTGCTGCCGCTGCTGGTTTTGTTGGCTATCTCAATCACCATaGCTTGAAGCTTCCTCAGTTGATCTAGAAGGGACAGATTCTGTT | + |
Preference number: 5 (lower is better) Translates to: HKCCRCWFCWLSQSP*LEASSVDLEGTDSV Trigger: AACAGAATCTGTCCCTTCTAGATCAACTGAGGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 90 bp | GCTCTCTCCTCCCACAACTTATCATTTCACACTCACCTAGATCTATaGAGACGTGCTCCTGTGGAAGGGAGTAGTTGTGATCATGGAGAA | + |
Preference number: 5 (lower is better) Translates to: ALSSHNLSFHTHLDL*RRAPVEGSSCDHGE Trigger: TTCTCCATGATCACAACTACTCCCTTCCACAGGAGCACGTCTCCATAGATCTAGGTGAGTGTGAAATGATAAGTTGTGGGAGGAGAGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167751.2 |
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CDS-3UTR CAA 90 bp | CAGCTTTCCCCTGCTCCTTTTTATTTGAATACAGACAGGAGTCCTCAGGCTGAGAGTACACAGGAAAAGTaGCTGGAGACCAAGAACATA | + |
Preference number: 5 (lower is better) Translates to: QLSPAPFYLNTDRSPQAESTQEK*LETKNI Trigger: TATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTACT...CTCAGCCTGAGGACTCCTGTCTGTATTCAAATAAAAAGGAGCAGGGGAAAGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS GCA 72 bp | GCTGATGATCGTCCTCGCTGGGGAGGGCACGAAGCTTaGGGTGCAACACAACATACTCCGCGGGCACACTTC | + |
Preference number: 6 (lower is better) Translates to: ADDRPRWGGHEA*GATQHTPRAHF Trigger: GAAGTGTGCCCGCGGAGTATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS TCA 72 bp | AGATCCCAGAGTGGCCAGTGCAGGGGCTGCTCTGCCTaGGGCGCGTGGTACAGTACACAGGAAAAGTTGCTG | + |
Preference number: 6 (lower is better) Translates to: RSQSGQCRGCSA*GAWYSTQEKLL Trigger: CAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGCCCCTGCACTGGCCACTCTGGGATCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 72 bp | CTCGGTCAGTATCAGCCTAGACATCTCCTGTTCCGCTaGTCTTTCCTCCCCTGGCAGTGGAGTCACGTGGAA | + |
Preference number: 6 (lower is better) Translates to: LGQYQPRHLLFR*SFLPWQWSHVE Trigger: TTCCACGTGACTCCACTGCCAGGGGAGGAAAGAGCAGCGGAACAGGAGATGTCTAGGCTGATACTGACCGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 72 bp | AGAAAGATCCCAGAGTGGCCAGTGCAGGGGCTGCTCTaGCTGAGGCGCGTGGTACAGTACACAGGAAAAGTT | + |
Preference number: 6 (lower is better) Translates to: RKIPEWPVQGLL*LRRVVQYTGKV Trigger: AACTTTTCCTGTGTACTGTACCACGCGCCTCAGGCAGAGCAGCCCCTGCACTGGCCACTCTGGGATCTTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 72 bp | ATAGAGCAGATGGCTTCGGCTGATGATCGTCCTCGCTaGGGAGGGCACGAAGCTTGCGGTGCAACACAACAT | + |
Preference number: 6 (lower is better) Translates to: IEQMASADDRPR*GGHEACGATQH Trigger: ATGTTGTGTTGCACCGCAAGCTTCGTGCCCTCCCCAGCGAGGACGATCATCAGCCGAAGCCATCTGCTCTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 72 bp | GTGCAACACAACATACTCCGCGGGCACACTTCCCCTTaGATCAGAGGAGTACATAGCGGGTACCAGGAGAAG | + |
Preference number: 6 (lower is better) Translates to: VQHNILRGHTSP*IRGVHSGYQEK Trigger: CTTCTCCTGGTACCCGCTATGTACTCCTCTGATGCAAGGGGAAGTGTGCCCGCGGAGTATGTTGTGTTGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 72 bp | GTTCTGAGCTGTCCAGTGACTGGTGTGTGCTGTCCATaGGTAGCTCTGACGATAGAGCAGATGGCTTCGGCT | + |
Preference number: 6 (lower is better) Translates to: VLSCPVTGVCCP*VALTIEQMASA Trigger: AGCCGAAGCCATCTGCTCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS TCA 72 bp | TGGAAGAGCCGAGAACATCCCGCGATACTGAGGGACTaGGCAGAGAGCTCAGTAAATCCTCTACCTCCCAGT | + |
Preference number: 6 (lower is better) Translates to: WKSREHPAILRD*AESSVNPLPPS Trigger: ACTGGGAGGTAGAGGATTTACTGAGCTCTCTGCTCAGTCCCTCAGTATCGCGGGATGTTCTCGGCTCTTCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CAA 90 bp | GGTTGCCATCCCTCGCTTTCTGAAAGGTTTGCCTGCAGGAGAAGGTaGGAGTCGGAGAAGAGCATCTCTGAAGAAAGATCCCAGAGTGGC | + |
Preference number: 6 (lower is better) Translates to: GCHPSLSERFACRRR*ESEKSISEERSQSG Trigger: GCCACTCTGGGATCTTTCTTCAGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCGAGGGATGGCAACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 72 bp | CTCAGTAAATCCTCTACCTCCCAGTCGCTCAGTTCTTaGACGGAGTTCTCGGAAGGTGACAGCTCTAAGTCC | + |
Preference number: 6 (lower is better) Translates to: LSKSSTSQSLSS*TEFSEGDSSKS Trigger: GGACTTAGAGCTGTCACCTTCCGAGAACTCCGTGCAAGAACTGAGCGACTGGGAGGTAGAGGATTTACTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 72 bp | GAAGGGAGTAGTTGTGATCATGGAGAATGGAAGAGCTaGAAGAGCCGAGAACATCCCGCGATACTGAGGGAC | + |
Preference number: 6 (lower is better) Translates to: EGSSCDHGEWKS*KSREHPAILRD Trigger: GTCCCTCAGTATCGCGGGATGTTCTCGGCTCTTCCAGCTCTTCCATTCTCCATGATCACAACTACTCCCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 72 bp | GCTCCTGTGGAAGGGAGTAGTTGTGATCATGGAGAATaGAAGAGCTGGAAGAGCCGAGAACATCCCGCGATA | + |
Preference number: 6 (lower is better) Translates to: APVEGSSCDHGE*KSWKSREHPAI Trigger: TATCGCGGGATGTTCTCGGCTCTTCCAGCTCTTCCATTCTCCATGATCACAACTACTCCCTTCCACAGGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 72 bp | AGGAGAACACGAGGACCAGAACACAAGTGCTGCCGCTaGTGGTTTTGTTGGCTATCTCAATCACCATGGCTT | + |
Preference number: 6 (lower is better) Translates to: RRTRGPEHKCCR*WFCWLSQSPWL Trigger: AAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 72 bp | TTAGGTTGCCATCCCTCGCTTTCTGAAAGGTTTGCCTaGAGGAGAAGGTTGGAGTCGGAGAAGAGCATCTCT | + |
Preference number: 6 (lower is better) Translates to: LGCHPSLSERFA*RRRLESEKSIS Trigger: AGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCGAGGGATGGCAACCTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 72 bp | CCTGAGGCGCGTGGTACAGTACACAGGAAAAGTTGCTaGAGACCAAGAACATATGTTCTGAGCTGTCCAGTG | + |
Preference number: 6 (lower is better) Translates to: PEARGTVHRKSC*RPRTYVLSCPV Trigger: CACTGGACAGCTCAGAACATATGTTCTTGGTCTCCAGCAACTTTTCCTGTGTACTGTACCACGCGCCTCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 72 bp | CCTCGCTTTCTGAAAGGTTTGCCTGCAGGAGAAGGTTaGAGTCGGAGAAGAGCATCTCTGAAGAAAGATCCC | + |
Preference number: 6 (lower is better) Translates to: PRFLKGLPAGEG*SRRRASLKKDP Trigger: GGGATCTTTCTTCAGAGATGCTCTTCTCCGACTCCAACCTTCTCCTGCAGGCAAACCTTTCAGAAAGCGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 72 bp | GAAGACAGAAGGAGAACACGAGGACCAGAACACAAGTaGTGCCGCTGCTGGTTTTGTTGGCTATCTCAATCA | + |
Preference number: 6 (lower is better) Translates to: EDRRRTRGPEHK*CRCWFCWLSQS Trigger: TGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCTCCTTCTGTCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS GCA 72 bp | AGAACATATGTTCTGAGCTGTCCAGTGACTGGTGTGTaGTGTCCATGGGTAGCTCTGACGATAGAGCAGATG | + |
Preference number: 6 (lower is better) Translates to: RTYVLSCPVTGV*CPWVALTIEQM Trigger: CATCTGCTCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAACATATGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 72 bp | AGAACACGAGGACCAGAACACAAGTGCTGCCGCTGCTaGTTTTGTTGGCTATCTCAATCACCATGGCTTGAA | + |
Preference number: 6 (lower is better) Translates to: RTRGPEHKCCRC*FCWLSQSPWLE Trigger: TTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCAGCACTTGTGTTCTGGTCCTCGTGTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 72 bp | GAGACCAAGAACATATGTTCTGAGCTGTCCAGTGACTaGTGTGTGCTGTCCATGGGTAGCTCTGACGATAGA | + |
Preference number: 6 (lower is better) Translates to: ETKNICSELSSD*CVLSMGSSDDR Trigger: TCTATCGTCAGAGCTACCCATGGACAGCACACACCAGTCACTGGACAGCTCAGAACATATGTTCTTGGTCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |
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CDS CCA 72 bp | ACCCCTCCTTTTCGAAGCTCTCAGTATCTAGATCTATaGAGACGTGCTCCTGTGGAAGGGAGTAGTTGTGAT | + |
Preference number: 6 (lower is better) Translates to: TPPFRSSQYLDL*RRAPVEGSSCD Trigger: ATCACAACTACTCCCTTCCACAGGAGCACGTCTCCATAGATCTAGATACTGAGAGCTTCGAAAAGGAGGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102944.11 |
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CDS CCA 72 bp | TGCCGCTGCTGGTTTTGTTGGCTATCTCAATCACCATaGCTTGAAGCTTCCTCAGTTGATCTAGAAGGGACA | + |
Preference number: 6 (lower is better) Translates to: CRCWFCWLSQSP*LEASSVDLEGT Trigger: TGTCCCTTCTAGATCAACTGAGGAAGCTTCAAGCCATGGTGATTGAGATAGCCAACAAAACCAGCAGCGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102944.11 ENSMUST00000167751.2 |