Pregenerated sensors for CRCT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027913Ensembl transcript IDs: ENSMUST00000029521.5, ENSMUST00000107301.2
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAACTCCTAGGCCGGTCCTTCCTGTTACTACTATGGAGGACTGGGTaGGAGCAGCAAAGACGCTGTGCGATGCCAGCTGTTCCGGAGAAG | + |
|
Preference number: 1 (lower is better) Translates to: KLLGRSFLLLLWRTG*EQQRRCAMPAVPEK Trigger: CTTCTCCGGAACAGCTGGCATCGCACAGCGTCTTTGCTGCTCTCACCCAGTCCTCCATAGTAGTAACAGGAAGGACCGGCCTAGGAGTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| 3UTR-3UTR CCA 90 bp | CAGGAGGCCTGTTTTGAACACTGCTGTGCACAACCTCCTGCCCATAGCGTGATCACTACTATGGAGGACTaGGTGAGAGCAGCAAAGACG | + |
|
Preference number: 2 (lower is better) Translates to: QEACFEHCCAQPPAHSVITTMED*VRAAKT Trigger: CGTCTTTGCTGCTCTCACCCAGTCCTCCATAGTAGT...GATCACGCTATGGGCAGGAGGTTGTGCACAGCAGTGTTCAAAACAGGCCTCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| 3UTR TCA 72 bp | CACTGCTGTGCACAACCTCCTGCCCATAGCGTGATCTaGAGTCCCACCCCTGACTTGTATCCCCTGGGAGGA | + |
|
Preference number: 3 (lower is better) Translates to: HCCAQPPAHSVI*SPTPDLYPLGG Trigger: TCCTCCCAGGGGATACAAGTCAGGGGTGGGACTTCAGATCACGCTATGGGCAGGAGGTTGTGCACAGCAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| 3UTR TCA 72 bp | GGCCGGTCCTTCCTGTTACTACTATGGAGGACTGGGTaGGAGCAGCAAAGACGCTGTGCGATGCCAGCTGTT | + |
|
Preference number: 3 (lower is better) Translates to: GRSFLLLLWRTG*EQQRRCAMPAV Trigger: AACAGCTGGCATCGCACAGCGTCTTTGCTGCTCTCACCCAGTCCTCCATAGTAGTAACAGGAAGGACCGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| 3UTR TCA 72 bp | TTGAACACTGCTGTGCACAACCTCCTGCCCATAGCGTaGTCTGAAGTCCCACCCCTGACTTGTATCCCCTGG | + |
|
Preference number: 3 (lower is better) Translates to: LNTAVHNLLPIA*SEVPPLTCIPW Trigger: CCAGGGGATACAAGTCAGGGGTGGGACTTCAGATCACGCTATGGGCAGGAGGTTGTGCACAGCAGTGTTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| CDS-3UTR CCA 90 bp | GTCTCCAGGCGACAATCAAATCAGGAGGCCTGTTTTGAACACTGCTGTGCACAAGTCGGCGGCGTCTCCTaGGAAAGCAGCAGCAGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: VSRRQSNQEACFEHCCAQVGGVS*ESSSSR Trigger: CCGGCTGCTGCTGCTTTCCCAGGAGACGCCGCCGAC...TTGTGCACAGCAGTGTTCAAAACAGGCCTCCTGATTTGATTGTCGCCTGGAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| CDS-3UTR CCA 90 bp | TACTATGGAGGACTGGGTGAGAGCAGCAAAGACGCTGTGCGATGCCAGCTGTTCCAGGGGGCGGAACTCTaGGAAGACCCTTTGGAAAAG | + |
|
Preference number: 4 (lower is better) Translates to: YYGGLGESSKDAVRCQLFQGAEL*EDPLEK Trigger: CTTTTCCAAAGGGTCTTCCCAGAGTTCCGCCCCCTG...GAACAGCTGGCATCGCACAGCGTCTTTGCTGCTCTCACCCAGTCCTCCATAGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| 3UTR CAA 72 bp | ATGTCTCCAGGCGACAATCAAATCAGGAGGCCTGTTTaGAACACTGCTGTGCACAACCTCCTGCCCATAGCG | + |
|
Preference number: 4 (lower is better) Translates to: MSPGDNQIRRPV*NTAVHNLLPIA Trigger: CGCTATGGGCAGGAGGTTGTGCACAGCAGTGTTCAAAACAGGCCTCCTGATTTGATTGTCGCCTGGAGACAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| CDS-3UTR TCA 90 bp | GTTTCTGAACATCAAAGTGCAGTTAGCTTAAGGGAAACCAAACTCCTAGGCCGGTTGTTGCAGGAGCGTTaGGACCTTTGGCTTCCTCCG | + |
|
Preference number: 4 (lower is better) Translates to: VSEHQSAVSLRETKLLGRLLQER*DLWLPP Trigger: CGGAGGAAGCCAAAGGTCTCAACGCTCCTGCAACAA...CCGGCCTAGGAGTTTGGTTTCCCTTAAGCTAACTGCACTTTGATGTTCAGAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| CDS-3UTR CCA 90 bp | GTTTCTGAACATCAAAGTGCAGTTAGCTTAAGGGAAACCAAACTCCTAGGCCGGTCTGGGAAGACCCTTTaGAAAAGCCTTTGGCGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: VSEHQSAVSLRETKLLGRSGKTL*KSLWRP Trigger: AGGGCGCCAAAGGCTTTTCCAAAGGGTCTTCCCAGA...CCGGCCTAGGAGTTTGGTTTCCCTTAAGCTAACTGCACTTTGATGTTCAGAAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| CDS-3UTR CAA 90 bp | AGGCGACAATCAAATCAGGAGGCCTGTTTTGAACACTGCTGTGCACAACCTCCTCTCTGGGAAGACCCTTaGGAAAAGCCTTTGGCGCCC | + |
|
Preference number: 5 (lower is better) Translates to: RRQSNQEACFEHCCAQPPLWEDP*EKPLAP Trigger: GGGCGCCAAAGGCTTTTCCAAAGGGTCTTCCCAGAG...AGGAGGTTGTGCACAGCAGTGTTCAAAACAGGCCTCCTGATTTGATTGTCGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029521.5 |
||
| CDS CCA 72 bp | AGCCGCAGCCGCCAGAGCGCTGTCGGCGGCGTCTCCTaGGAAAGCAGCAGCAGCCGGTGGAACTGGAGCCGC | + |
|
Preference number: 6 (lower is better) Translates to: SRSRQSAVGGVS*ESSSSRWNWSR Trigger: GCGGCTCCAGTTCCACCGGCTGCTGCTGCTTTCCCAGGAGACGCCGCCGACAGCGCTCTGGCGGCTGCGGCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029521.5 ENSMUST00000107301.2 |
||
| CDS GCA 72 bp | AGCAGCCACCGGAGCAGCAGCCTGAACTCTGATTGTTaGAGGAGCGTTGAGACCTTTGGCTTCCTCCGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: SSHRSSSLNSDC*RSVETFGFLRS Trigger: GCTGCGGAGGAAGCCAAAGGTCTCAACGCTCCTGCAACAATCAGAGTTCAGGCTGCTGCTCCGGTGGCTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029521.5 ENSMUST00000107301.2 |
||