Pregenerated sensors for CRCP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025532Ensembl transcript IDs: ENSMUST00000026608.11, ENSMUST00000202163.4, ENSMUST00000202756.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCCATAGCCACGTCATTGCTAGTGCTTTTGCTCTGTTCATCCTCTaGACCTGCAGGCAGAATGCTAGTGACAGTGTGCAGGAGGGCTTC | + |
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Preference number: 1 (lower is better) Translates to: FHSHVIASAFALFIL*TCRQNASDSVQEGF Trigger: GAAGCCCTCCTGCACACTGTCACTAGCATTCTGCCTGCAGGTCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR-3UTR GCA 90 bp | CTGTGTGCATGTGCGGCACAGGCCACACAAGCCTTTCTACCCCAGACAGCTGCAAGACAGCTGCAGTCCTaGTCCCCCATCTTAGCCCCT | + |
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Preference number: 2 (lower is better) Translates to: LCACAAQATQAFLPQTAARQLQS*SPILAP Trigger: AGGGGCTAAGATGGGGGAGCAGGACTGCAGCTGTCT...TGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCACACAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR-3UTR GCA 90 bp | CACTGTGTGCATGTGCGGCACAGGCCACACAAGCCTTTCTACCCCAGACAGCTGTCTACCCCAGACAGCTaGAGTCCTGCTCCCCCATCT | + |
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Preference number: 2 (lower is better) Translates to: HCVHVRHRPHKPFYPRQLSTPDS*SPAPPS Trigger: AGATGGGGGAGCAGGACTGCAGCTGTCTGGGGTAGA...CAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCACACAGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR-3UTR TCA 90 bp | TTTCCCCTAGAGCAGCTGTGTGCAGCTCTGAGAGCTGGTGACCATCTGAGTCCGGCCCCTGCCCTGCTCTaGCCCCAAAGCACAAAGATT | + |
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Preference number: 2 (lower is better) Translates to: FPLEQLCAALRAGDHLSPAPALL*PQSTKI Trigger: AATCTTTGTGCTTTGGGGTCAGAGCAGGGCAGGGGC...CGGACTCAGATGGTCACCAGCTCTCAGAGCTGCACACAGCTGCTCTAGGGGAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR-3UTR TCA 90 bp | GTGCATGTGCGGCACAGGCCACACAAGCCTTTCTACCCCAGACAGCTGCAGTCCCTACCCAGCAGTGCCTaGCATTGCCTACAACAGTCA | + |
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Preference number: 2 (lower is better) Translates to: VHVRHRPHKPFYPRQLQSLPSSA*HCLQQS Trigger: TGACTGTTGTAGGCAATGTCAGGCACTGCTGGGTAG...GGACTGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR-3UTR GCA 90 bp | CTCTACAGTGAGCTAAGCTCTGGGTCATTTCCCCTAGAGCAGCTGTGTGCAGCTCCCACTGTGTGCATGTaGGGCACAGGCCACACAAGC | + |
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Preference number: 2 (lower is better) Translates to: LYSELSSGSFPLEQLCAAPTVCM*GTGHTS Trigger: GCTTGTGTGGCCTGTGCCGCACATGCACACAGTGGG...AGCTGCACACAGCTGCTCTAGGGGAAATGACCCAGAGCTTAGCTCACTGTAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR CAA 90 bp | CTGAGTCCGTTCTCCCAGCTCCATTCTACCCAGCAGTGCCTGACATaGCCTACAACAGTCATCAAAGCGCCTGACGAGCTCCCACTGTGT | + |
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Preference number: 2 (lower is better) Translates to: LSPFSQLHSTQQCLT*PTTVIKAPDELPLC Trigger: ACACAGTGGGAGCTCGTCAGGCGCTTTGATGACTGTTGTAGGCAATGTCAGGCACTGCTGGGTAGAATGGAGCTGGGAGAACGGACTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR-3UTR GCA 90 bp | CTAGAGCAGCTGTGTGCAGCTCTGAGAGCTGGTGACCATCTGAGTCCGTTCTCCCATCCAGGAAATGGCTaGTGCAGCTTTGAGCTTCAC | + |
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Preference number: 2 (lower is better) Translates to: LEQLCAALRAGDHLSPFSHPGNG*CSFELH Trigger: GTGAAGCTCAAAGCTGCAGCAGCCATTTCCTGGATG...GGAGAACGGACTCAGATGGTCACCAGCTCTCAGAGCTGCACACAGCTGCTCTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR CAA 90 bp | CAGCTGCACATCTATGCTGGCTCCTCCTCTTCCATAGCCACGTCATaGCTAGTGCTTTTGCTCTGTTCATCCTCTGGACCTGCAGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: QLHIYAGSSSSIATS*LVLLLCSSSGPAGR Trigger: TCTGCCTGCAGGTCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGAAGAGGAGGAGCCAGCATAGATGTGCAGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR-3UTR GCA 90 bp | TTTCCCCTAGAGCAGCTGTGTGCAGCTCTGAGAGCTGGTGACCATCTGAGTCCGCATTCTACCCAGCAGTaGCTGACATTGCCTACAACA | + |
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Preference number: 2 (lower is better) Translates to: FPLEQLCAALRAGDHLSPHSTQQ*LTLPTT Trigger: TGTTGTAGGCAATGTCAGGCACTGCTGGGTAGAATG...CGGACTCAGATGGTCACCAGCTCTCAGAGCTGCACACAGCTGCTCTAGGGGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR-3UTR GCA 90 bp | CATCCAGGAAATGGCTGCTGCAGCTTTGAGCTTCACGAACAACTTGGCCAGCTGCATCCAGGAAATGGCTaGTGCAGCTTTGAGCTTCAC | + |
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Preference number: 2 (lower is better) Translates to: HPGNGCCSFELHEQLGQLHPGNG*CSFELH Trigger: GTGAAGCTCAAAGCTGCAGCAGCCATTTCCTGGATG...CAGCTGGCCAAGTTGTTCGTGAAGCTCAAAGCTGCAGCAGCCATTTCCTGGATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 ENSMUST00000202756.2 |
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| 3UTR-3UTR GCA 90 bp | AGGACATTCCTCTACAGTGAGCTAAGCTCTGGGTCATTTCCCCTAGAGCAGCTGCCAGCTGCACATCTATaGTGGCTCCTCCTCTTCCAT | + |
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Preference number: 2 (lower is better) Translates to: RTFLYSELSSGSFPLEQLPAAHL*WLLLFH Trigger: ATGGAAGAGGAGGAGCCAGCATAGATGTGCAGCTGG...CAGCTGCTCTAGGGGAAATGACCCAGAGCTTAGCTCACTGTAGAGGAATGTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR CAA 90 bp | TATGCTGGCTCCTCCTCTTCCATAGCCACGTCATTGCTAGTGCTTTaGCTCTGTTCATCCTCTGGACCTGCAGGCAGAATGCTAGTGACA | + |
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Preference number: 2 (lower is better) Translates to: YAGSSSSIATSLLVL*LCSSSGPAGRMLVT Trigger: TGTCACTAGCATTCTGCCTGCAGGTCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGAAGAGGAGGAGCCAGCATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR-3UTR TCA 90 bp | AGAAGGGACCGCATAATAAGTTCAAGGTCAATGTGGGCTGCAAGAGACTCTGAAGCCCCTGCCCTGCTCTaGCCCCAAAGCACAAAGATT | + |
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Preference number: 2 (lower is better) Translates to: RRDRIISSRSMWAARDSEAPALL*PQSTKI Trigger: AATCTTTGTGCTTTGGGGTCAGAGCAGGGCAGGGGC...TTCAGAGTCTCTTGCAGCCCACATTGACCTTGAACTTATTATGCGGTCCCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| 3UTR-3UTR GCA 90 bp | CCTATTCCGCCAAGGACATTCCTCTACAGTGAGCTAAGCTCTGGGTCATTTCCCCATCCAGGAAATGGCTaGTGCAGCTTTGAGCTTCAC | + |
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Preference number: 2 (lower is better) Translates to: PIPPRTFLYSELSSGSFPHPGNG*CSFELH Trigger: GTGAAGCTCAAAGCTGCAGCAGCCATTTCCTGGATG...GGGAAATGACCCAGAGCTTAGCTCACTGTAGAGGAATGTCCTTGGCGGAATAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR-3UTR TCA 90 bp | TATTTTTATGAGACAGGGTCTGTGTGGCGCTGGCTGGCATGGAACTTGCTTTGTGGCTGCAAGAGACTCTaGAAACAAACGCTTCTCGTG | + |
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Preference number: 2 (lower is better) Translates to: YFYETGSVWRWLAWNLLCGCKRL*KQTLLV Trigger: CACGAGAAGCGTTTGTTTTCAGAGTCTCTTGCAGCC...ACAAAGCAAGTTCCATGCCAGCCAGCGCCACACAGACCCTGTCTCATAAAAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| 3UTR CAA 90 bp | GTGACATGCATGCACATTAGGTGTGTACACCAGGCTAGGCTCAGATaGGAGTTTTCTCTTATCTCCTATTCCGCCAAGGACATTCCTCTA | + |
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Preference number: 2 (lower is better) Translates to: VTCMHIRCVHQARLR*EFSLISYSAKDIPL Trigger: TAGAGGAATGTCCTTGGCGGAATAGGAGATAAGAGAAAACTCCAATCTGAGCCTAGCCTGGTGTACACACCTAATGTGCATGCATGTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| 3UTR-3UTR GCA 90 bp | TCAAGGTCAATGTGGGCTGCAAGAGACTCTGAAAACAAACGCTTCTCGTGTTTTCATTCTACCCAGCAGTaGCTGACATTGCCTACAACA | + |
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Preference number: 2 (lower is better) Translates to: SRSMWAARDSENKRFSCFHSTQQ*LTLPTT Trigger: TGTTGTAGGCAATGTCAGGCACTGCTGGGTAGAATG...AAAACACGAGAAGCGTTTGTTTTCAGAGTCTCTTGCAGCCCACATTGACCTTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| 3UTR-3UTR CAA 90 bp | CGGCACAGGCCACACAAGCCTTTCTACCCCAGACAGCTGCAGTCCTGCTCCCCCCAGCAGTGCCTGACATaGCCTACAACAGTCATCAAA | + |
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Preference number: 3 (lower is better) Translates to: RHRPHKPFYPRQLQSCSPQQCLT*PTTVIK Trigger: TTTGATGACTGTTGTAGGCAATGTCAGGCACTGCTG...GGGGGAGCAGGACTGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCG 58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR TCA 72 bp | GTGCCTGACATTGCCTACAACAGTCATCAAAGCGCCTaGCGAGCTCCCACTGTGTGCATGTGCGGCACAGGC | + |
|
Preference number: 3 (lower is better) Translates to: VPDIAYNSHQSA*RAPTVCMCGTG Trigger: GCCTGTGCCGCACATGCACACAGTGGGAGCTCGTCAGGCGCTTTGATGACTGTTGTAGGCAATGTCAGGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR CCA 72 bp | TTTTATGAGACAGGGTCTGTGTGGCGCTGGCTGGCATaGAACTTGCTTTGTGGACCAGGCTGGCCTCCGCCT | + |
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Preference number: 3 (lower is better) Translates to: FYETGSVWRWLA*NLLCGPGWPPP Trigger: AGGCGGAGGCCAGCCTGGTCCACAAAGCAAGTTCCATGCCAGCCAGCGCCACACAGACCCTGTCTCATAAAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| 3UTR TCA 72 bp | TCCCCTAGAGCAGCTGTGTGCAGCTCTGAGAGCTGGTaGCCATCTGAGTCCGTTCTCCCAGCTCCATTCTAC | + |
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Preference number: 3 (lower is better) Translates to: SPRAAVCSSESW*PSESVLPAPFY Trigger: GTAGAATGGAGCTGGGAGAACGGACTCAGATGGTCACCAGCTCTCAGAGCTGCACACAGCTGCTCTAGGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR-3UTR CAA 90 bp | CAGTCATCAAAGCGCCTGACGAGCTCCCACTGTGTGCATGTGCGGCACAGGCCATCCATAGCCACGTCATaGCTAGTGCTTTTGCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: QSSKRLTSSHCVHVRHRPSIATS*LVLLLC Trigger: ACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGA...TGGCCTGTGCCGCACATGCACACAGTGGGAGCTCGTCAGGCGCTTTGATGACTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR TCA 72 bp | GTCCGTTCTCCCAGCTCCATTCTACCCAGCAGTGCCTaGCATTGCCTACAACAGTCATCAAAGCGCCTGACG | + |
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Preference number: 3 (lower is better) Translates to: VRSPSSILPSSA*HCLQQSSKRLT Trigger: CGTCAGGCGCTTTGATGACTGTTGTAGGCAATGTCAGGCACTGCTGGGTAGAATGGAGCTGGGAGAACGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR-3UTR CAA 90 bp | GCCACACAAGCCTTTCTACCCCAGACAGCTGCAGTCCTGCTCCCCCATCTTAGCTCATTGCTAGTGCTTTaGCTCTGTTCATCCTCTGGA | + |
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Preference number: 3 (lower is better) Translates to: ATQAFLPQTAAVLLPHLSSLLVL*LCSSSG Trigger: TCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGA...GCTAAGATGGGGGAGCAGGACTGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR CCA 72 bp | TTTATTTTTATGAGACAGGGTCTGTGTGGCGCTGGCTaGCATGGAACTTGCTTTGTGGACCAGGCTGGCCTC | + |
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Preference number: 3 (lower is better) Translates to: FIFMRQGLCGAG*HGTCFVDQAGL Trigger: GAGGCCAGCCTGGTCCACAAAGCAAGTTCCATGCCAGCCAGCGCCACACAGACCCTGTCTCATAAAAATAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| 3UTR CCA 72 bp | GCTTCACGAACAACTTGGCCAGCTGCACATCTATGCTaGCTCCTCCTCTTCCATAGCCACGTCATTGCTAGT | + |
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Preference number: 3 (lower is better) Translates to: ASRTTWPAAHLC*LLLFHSHVIAS Trigger: ACTAGCAATGACGTGGCTATGGAAGAGGAGGAGCCAGCATAGATGTGCAGCTGGCCAAGTTGTTCGTGAAGC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR CCA 72 bp | CACGTCATTGCTAGTGCTTTTGCTCTGTTCATCCTCTaGACCTGCAGGCAGAATGCTAGTGACAGTGTGCAG | + |
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Preference number: 3 (lower is better) Translates to: HVIASAFALFIL*TCRQNASDSVQ Trigger: CTGCACACTGTCACTAGCATTCTGCCTGCAGGTCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGACGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR TCA 72 bp | TTGCTTTGTGGACCAGGCTGGCCTCCGCCTCCTAAGTaGGTGACATACACTTTGAATCCAAGCATTAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: LLCGPGWPPPPK*VTYTLNPSIKE Trigger: CTCCTTAATGCTTGGATTCAAAGTGTATGTCACTCACTTAGGAGGCGGAGGCCAGCCTGGTCCACAAAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| 3UTR CCA 72 bp | TGCACATTAGGTGTGTACACCAGGCTAGGCTCAGATTaGAGTTTTCTCTTATCTCCTATTCCGCCAAGGACA | + |
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Preference number: 3 (lower is better) Translates to: CTLGVYTRLGSD*SFLLSPIPPRT Trigger: TGTCCTTGGCGGAATAGGAGATAAGAGAAAACTCCAATCTGAGCCTAGCCTGGTGTACACACCTAATGTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| 3UTR TCA 72 bp | AATAAGTTCAAGGTCAATGTGGGCTGCAAGAGACTCTaGAAACAAACGCTTCTCGTGTTTTGTAATATGCTA | + |
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Preference number: 3 (lower is better) Translates to: NKFKVNVGCKRL*KQTLLVFCNML Trigger: TAGCATATTACAAAACACGAGAAGCGTTTGTTTTCAGAGTCTCTTGCAGCCCACATTGACCTTGAACTTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS-3UTR TCA 90 bp | CTGTGTGCATGTGCGGCACAGGCCACACAAGCCTTTCTACCCCAGACAGCTGCAGCAGTCATCGGCCTGTaGTTCAGCAGCTGCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: LCACAAQATQAFLPQTAAAVIGL*FSSCSF Trigger: GAAGCTGCAGCTGCTGAATCACAGGCCGATGACTGC...TGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCACACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| CDS-3UTR TCA 90 bp | TCCTCTGGACCTGCAGGCAGAATGCTAGTGACAGTGTGCAGGAGGGCTTCGATCGCAGTCATCGGCCTGTaGTTCAGCAGCTGCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: SSGPAGRMLVTVCRRASIAVIGL*FSSCSF Trigger: GAAGCTGCAGCTGCTGAATCACAGGCCGATGACTGC...GATCGAAGCCCTCCTGCACACTGTCACTAGCATTCTGCCTGCAGGTCCAGAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| CDS-3UTR TCA 90 bp | CACTGTGTGCATGTGCGGCACAGGCCACACAAGCCTTTCTACCCCAGACAGCTGCGATCTGCTCCTCTGTaGGCCGTTCTTCACTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: HCVHVRHRPHKPFYPRQLRSAPL*AVLHSL Trigger: AAGAGAGTGAAGAACGGCTCACAGAGGAGCAGATCG...CAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCACACAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS-3UTR CCA 90 bp | TGCATGTGCGGCACAGGCCACACAAGCCTTTCTACCCCAGACAGCTGCAGTCCTTCTTCTACCATCAGCTaGATCTCCACCGCAGTCATC | + |
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Preference number: 4 (lower is better) Translates to: CMCGTGHTSLSTPDSCSPSSTIS*ISTAVI Trigger: GATGACTGCGGTGGAGATCCAGCTGATGGTAGAAGA...AGGACTGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| CDS-3UTR TCA 90 bp | GTGCATGTGCGGCACAGGCCACACAAGCCTTTCTACCCCAGACAGCTGCAGTCCGGCTTTTCATTGCTGTaGGGAATTCTTGGACAATCG | + |
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Preference number: 4 (lower is better) Translates to: VHVRHRPHKPFYPRQLQSGFSLL*GILGQS Trigger: CGATTGTCCAAGAATTCCTCACAGCAATGAAAAGCC...GGACTGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS-3UTR CCA 90 bp | AGCTCTGGGTCATTTCCCCTAGAGCAGCTGTGTGCAGCTCTGAGAGCTGGTGACTCTTCTACCATCAGCTaGATCTCCACCGCAGTCATC | + |
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Preference number: 4 (lower is better) Translates to: SSGSFPLEQLCAALRAGDSSTIS*ISTAVI Trigger: GATGACTGCGGTGGAGATCCAGCTGATGGTAGAAGA...GTCACCAGCTCTCAGAGCTGCACACAGCTGCTCTAGGGGAAATGACCCAGAGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| 3UTR CAA 72 bp | TTCTCCCAGCTCCATTCTACCCAGCAGTGCCTGACATaGCCTACAACAGTCATCAAAGCGCCTGACGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: FSQLHSTQQCLT*PTTVIKAPDEL Trigger: GAGCTCGTCAGGCGCTTTGATGACTGTTGTAGGCAATGTCAGGCACTGCTGGGTAGAATGGAGCTGGGAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| CDS-3UTR TCA 90 bp | CAGGAAATGGCTGCTGCAGCTTTGAGCTTCACGAACAACTTGGCCAGCTGCACACGATCTGCTCCTCTGTaGGCCGTTCTTCACTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: QEMAAAALSFTNNLASCTRSAPL*AVLHSL Trigger: AAGAGAGTGAAGAACGGCTCACAGAGGAGCAGATCG...TGTGCAGCTGGCCAAGTTGTTCGTGAAGCTCAAAGCTGCAGCAGCCATTTCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202756.2 |
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| 3UTR CAA 72 bp | GAAATGGCTGCTGCAGCTTTGAGCTTCACGAACAACTaGGCCAGCTGCACATCTATGCTGGCTCCTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: EMAAAALSFTNN*ASCTSMLAPPL Trigger: AAGAGGAGGAGCCAGCATAGATGTGCAGCTGGCCAAGTTGTTCGTGAAGCTCAAAGCTGCAGCAGCCATTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| CDS-3UTR GCA 90 bp | CTCTACAGTGAGCTAAGCTCTGGGTCATTTCCCCTAGAGCAGCTGTGTGCAGCTTTCATCCTCTGGACCTaGAGGCAGAATGCTAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: LYSELSSGSFPLEQLCAAFILWT*RQNASD Trigger: GTCACTAGCATTCTGCCTGCAGGTCCAGAGGATGAA...AGCTGCACACAGCTGCTCTAGGGGAAATGACCCAGAGCTTAGCTCACTGTAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS-3UTR CCA 90 bp | CTACAACAGTCATCAAAGCGCCTGACGAGCTCCCACTGTGTGCATGTGCGGCACACAATCGCTGGACTCTaGTTCCTACATGGTGTTTTT | + |
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Preference number: 4 (lower is better) Translates to: LQQSSKRLTSSHCVHVRHTIAGL*FLHGVF Trigger: AAAAACACCATGTAGGAACCAGAGTCCAGCGATTGT...GTGCCGCACATGCACACAGTGGGAGCTCGTCAGGCGCTTTGATGACTGTTGTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| 3UTR CAA 72 bp | TCCTCCTCTTCCATAGCCACGTCATTGCTAGTGCTTTaGCTCTGTTCATCCTCTGGACCTGCAGGCAGAATG | + |
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Preference number: 4 (lower is better) Translates to: SSSSIATSLLVL*LCSSSGPAGRM Trigger: CATTCTGCCTGCAGGTCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGAAGAGGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR CAA 72 bp | ATCTATGCTGGCTCCTCCTCTTCCATAGCCACGTCATaGCTAGTGCTTTTGCTCTGTTCATCCTCTGGACCT | + |
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Preference number: 4 (lower is better) Translates to: IYAGSSSSIATS*LVLLLCSSSGP Trigger: AGGTCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGAAGAGGAGGAGCCAGCATAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| 3UTR CAA 72 bp | AGTTCTCTGAACATCCAGGAAATGGCTGCTGCAGCTTaGAGCTTCACGAACAACTTGGCCAGCTGCACATCT | + |
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Preference number: 4 (lower is better) Translates to: SSLNIQEMAAAA*SFTNNLASCTS Trigger: AGATGTGCAGCTGGCCAAGTTGTTCGTGAAGCTCAAAGCTGCAGCAGCCATTTCCTGGATGTTCAGAGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| CDS-3UTR GCA 90 bp | TCTCTGAACATCCAGGAAATGGCTGCTGCAGCTTTGAGCTTCACGAACAACTTGTTCATCCTCTGGACCTaGAGGCAGAATGCTAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: SLNIQEMAAAALSFTNNLFILWT*RQNASD Trigger: GTCACTAGCATTCTGCCTGCAGGTCCAGAGGATGAA...CAAGTTGTTCGTGAAGCTCAAAGCTGCAGCAGCCATTTCCTGGATGTTCAGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202756.2 |
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| 3UTR CAA 72 bp | GGACCGGAACCAGGAGTCAAGATAAGCCTCTTTTTCTaGTCACTCACCCAGGCTATAGAGTTGTGGGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: GPEPGVKISLFF*SLTQAIELWVL Trigger: CAAAACCCACAACTCTATAGCCTGGGTGAGTGACAAGAAAAAGAGGCTTATCTTGACTCCTGGTTCCGGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS-3UTR CCA 90 bp | TCAAGGTCAATGTGGGCTGCAAGAGACTCTGAAAACAAACGCTTCTCGTGTTTTGCTCTGTTCATCCTCTaGACCTGCAGGCAGAATGCT | + |
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Preference number: 4 (lower is better) Translates to: SRSMWAARDSENKRFSCFALFIL*TCRQNA Trigger: AGCATTCTGCCTGCAGGTCCAGAGGATGAACAGAGC...AAAACACGAGAAGCGTTTGTTTTCAGAGTCTCTTGCAGCCCACATTGACCTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS-3UTR CCA 90 bp | TTTATTTTTATGAGACAGGGTCTGTGTGGCGCTGGCTGGCATGGAACTTGCTTTGCTTTGGTCAGCTTGTaGCTTTTCATTGCTGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: FIFMRQGLCGAGWHGTCFALVSL*LFIAVR Trigger: CCTCACAGCAATGAAAAGCCACAAGCTGACCAAAGC...AAAGCAAGTTCCATGCCAGCCAGCGCCACACAGACCCTGTCTCATAAAAATAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS-3UTR CAA 90 bp | CACTGTGTGCATGTGCGGCACAGGCCACACAAGCCTTTCTACCCCAGACAGCTGTGCCCAGCGCTATGCTaGTTCTTCCCACTCTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: HCVHVRHRPHKPFYPRQLCPALC*FFPLSF Trigger: GAAGGAGAGTGGGAAGAACAAGCATAGCGCTGGGCA...CAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCACACAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| CDS-3UTR CAA 90 bp | AGGCCACACAAGCCTTTCTACCCCAGACAGCTGCAGTCCTGCTCCCCCATCTTATGCCCAGCGCTATGCTaGTTCTTCCCACTCTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: RPHKPFYPRQLQSCSPILCPALC*FFPLSF Trigger: GAAGGAGAGTGGGAAGAACAAGCATAGCGCTGGGCA...TAAGATGGGGGAGCAGGACTGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| CDS TCA 90 bp | CTCTCTTCTACCATCAGCTGGATCTCCACCGCAGTCATCGGCCTGTaGTTCAGCAGCTGCAGCTTCTCCGCTTTGGTCAGCTTGTGGCTT | + |
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Preference number: 5 (lower is better) Translates to: LSSTISWISTAVIGL*FSSCSFSALVSLWL Trigger: AAGCCACAAGCTGACCAAAGCGGAGAAGCTGCAGCTGCTGAATCACAGGCCGATGACTGCGGTGGAGATCCAGCTGATGGTAGAAGAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS TCA 90 bp | CTCTCTTCTACCATCAGCTGGATCTCCACCGCAGTCATCGGCCTGTaGTTCAGCAGCTGCAGCTTCTCCGCTCTCATAGGTGATGGCGTT | + |
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Preference number: 5 (lower is better) Translates to: LSSTISWISTAVIGL*FSSCSFSALIGDGV Trigger: AACGCCATCACCTATGAGAGCGGAGAAGCTGCAGCTGCTGAATCACAGGCCGATGACTGCGGTGGAGATCCAGCTGATGGTAGAAGAGAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202163.4 |
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| CDS GCA 90 bp | CCTGCAGGCAGAATGCTAGTGACAGTGTGCAGGAGGGCTTCGATCTaGTCCTCTGTGAGCCGTTCTTCACTCTCTTCTACCATCAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: PAGRMLVTVCRRASI*SSVSRSSLSSTISW Trigger: CCAGCTGATGGTAGAAGAGAGTGAAGAACGGCTCACAGAGGAGCAGATCGAAGCCCTCCTGCACACTGTCACTAGCATTCTGCCTGCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS-3UTR CAA 90 bp | GGGTCATTTCCCCTAGAGCAGCTGTGTGCAGCTCTGAGAGCTGGTGACCATCTGTCCTTCCGCTGCTCTTaGAGATCCGTTAGTAACTGG | + |
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Preference number: 5 (lower is better) Translates to: GSFPLEQLCAALRAGDHLSFRCS*RSVSNW Trigger: CCAGTTACTAACGGATCTCAAAGAGCAGCGGAAGGA...CAGATGGTCACCAGCTCTCAGAGCTGCACACAGCTGCTCTAGGGGAAATGACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| CDS-3UTR CAA 90 bp | CAGGAAATGGCTGCTGCAGCTTTGAGCTTCACGAACAACTTGGCCAGCTGCACATCCTTCCGCTGCTCTTaGAGATCCGTTAGTAACTGG | + |
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Preference number: 5 (lower is better) Translates to: QEMAAAALSFTNNLASCTSFRCS*RSVSNW Trigger: CCAGTTACTAACGGATCTCAAAGAGCAGCGGAAGGA...TGTGCAGCTGGCCAAGTTGTTCGTGAAGCTCAAAGCTGCAGCAGCCATTTCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 ENSMUST00000202756.2 |
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| CDS-3UTR CAA 90 bp | AGCTCTGGGTCATTTCCCCTAGAGCAGCTGTGTGCAGCTCTGAGAGCTGGTGACTCATTGCTAGTGCTTTaGCTCTGTTCATCCTCTGGA | + |
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Preference number: 5 (lower is better) Translates to: SSGSFPLEQLCAALRAGDSLLVL*LCSSSG Trigger: TCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGA...GTCACCAGCTCTCAGAGCTGCACACAGCTGCTCTAGGGGAAATGACCCAGAGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS-3UTR CAA 90 bp | CCTATTCCGCCAAGGACATTCCTCTACAGTGAGCTAAGCTCTGGGTCATTTCCCTCCTTCCGCTGCTCTTaGAGATCCGTTAGTAACTGG | + |
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Preference number: 5 (lower is better) Translates to: PIPPRTFLYSELSSGSFPSFRCS*RSVSNW Trigger: CCAGTTACTAACGGATCTCAAAGAGCAGCGGAAGGA...GGGAAATGACCCAGAGCTTAGCTCACTGTAGAGGAATGTCCTTGGCGGAATAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202163.4 |
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| CDS-3UTR CAA 90 bp | CATCCAGGAAATGGCTGCTGCAGCTTTGAGCTTCACGAACAACTTGGCCAGCTGTCCATAGCCACGTCATaGCTAGTGCTTTTGCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: HPGNGCCSFELHEQLGQLSIATS*LVLLLC Trigger: ACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGA...CAGCTGGCCAAGTTGTTCGTGAAGCTCAAAGCTGCAGCAGCCATTTCCTGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202756.2 |
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| CDS-3UTR CAA 90 bp | GGCATACTGAGAGAGGGGGTCAGGCCAAATAAAGAGTTCTCTGAACATCCAGGATCATTGCTAGTGCTTTaGCTCTGTTCATCCTCTGGA | + |
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Preference number: 5 (lower is better) Translates to: GILREGVRPNKEFSEHPGSLLVL*LCSSSG Trigger: TCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGA...TCCTGGATGTTCAGAGAACTCTTTATTTGGCCTGACCCCCTCTCTCAGTATGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202756.2 |
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| CDS-3UTR CAA 90 bp | TATTTTTATGAGACAGGGTCTGTGTGGCGCTGGCTGGCATGGAACTTGCTTTGTTCCATAGCCACGTCATaGCTAGTGCTTTTGCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: YFYETGSVWRWLAWNLLCSIATS*LVLLLC Trigger: ACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGA...ACAAAGCAAGTTCCATGCCAGCCAGCGCCACACAGACCCTGTCTCATAAAAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS TCA 72 bp | ACCATCAGCTGGATCTCCACCGCAGTCATCGGCCTGTaGTTCAGCAGCTGCAGCTTCTCCGCTTTGGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: TISWISTAVIGL*FSSCSFSALVS Trigger: GCTGACCAAAGCGGAGAAGCTGCAGCTGCTGAATCACAGGCCGATGACTGCGGTGGAGATCCAGCTGATGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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| CDS GCA 72 bp | AGAATGCTAGTGACAGTGTGCAGGAGGGCTTCGATCTaGTCCTCTGTGAGCCGTTCTTCACTCTCTTCTACC | + |
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Preference number: 6 (lower is better) Translates to: RMLVTVCRRASI*SSVSRSSLSST Trigger: GGTAGAAGAGAGTGAAGAACGGCTCACAGAGGAGCAGATCGAAGCCCTCCTGCACACTGTCACTAGCATTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026608.11 ENSMUST00000202756.2 |
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| CDS CCA 72 bp | TTCAGCAGCTGCAGCTTCTCCGCTTTGGTCAGCTTGTaGCTTTTCATTGCTGTGAGGAATTCTTGGACAATC | + |
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Preference number: 6 (lower is better) Translates to: FSSCSFSALVSL*LFIAVRNSWTI Trigger: GATTGTCCAAGAATTCCTCACAGCAATGAAAAGCCACAAGCTGACCAAAGCGGAGAAGCTGCAGCTGCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026608.11 |
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