RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CRBN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005362

Ensembl transcript IDs: ENSMUST00000013882.10, ENSMUST00000113239.10, ENSMUST00000151484.7

Found 164 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCCACTATACACATATATCAGAGGCAGTGATGACTGGGCAGATCTaGCTTGAGGAAATATCTGTCAGGAAGTCACTCCTACAGGTGCAC +
Preference number: 1 (lower is better)
Translates to: THYTHISEAVMTGQI*LEEISVRKSLLQVH
Trigger: GTGCACCTGTAGGAGTGACTTCCTGACAGATATTTCCTCAAGTCAGATCTGCCCAGTCATCACTGCCTCTGATATATGTGTATAGTGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR TCA 90 bp CCATGGCCATTCCCATTATTTCAACTGTGTTTTCCTATCCTGTCATaGCATAGACTCAACAGGATAATCCATGGCACCAAGCTACTAAAA +
Preference number: 1 (lower is better)
Translates to: PWPFPLFQLCFPILS*HRLNRIIHGTKLLK
Trigger: TTTTAGTAGCTTGGTGCCATGGATTATCCTGTTGAGTCTATGTCATGACAGGATAGGAAAACACAGTTGAAATAATGGGAATGGCCATGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR CCA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTCCCTATCCTGTTCCATaGCCATTCCCATTATTTCAA +
Preference number: 2 (lower is better)
Translates to: GSSTSQAHQIKSATTPNAPYPVP*PFPLFQ
Trigger: TTGAAATAATGGGAATGGCCATGGAACAGGATAGGG...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR CAA 90 bp GAAAGGAGCAAAGTCCTTTTAAAATTACACTGCCTTGCCTCTATCTaGTGCTTACCAACCCAGTTTCTGGAGCATTCATCATTTAGAGCT +
Preference number: 2 (lower is better)
Translates to: ERSKVLLKLHCLASI*CLPTQFLEHSSFRA
Trigger: AGCTCTAAATGATGAATGCTCCAGAAACTGGGTTGGTAAGCACAAGATAGAGGCAAGGCAGTGTAATTTTAAAAGGACTTTGCTCCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR GCA 90 bp TATGTTCAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGCATTTAGAGCAGTGGTaGCCCTATCCTGTTCCATGG +
Preference number: 2 (lower is better)
Translates to: YVQNVQVSISDKLRKIERHLEQW*PYPVPW
Trigger: CCATGGAACAGGATAGGGGCACCACTGCTCTAAATG...CCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTGAACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR CCA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTACCAACCCAGTTTCTaGAGCATTCATCATTTAGAG +
Preference number: 2 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFYQPSF*SIHHLE
Trigger: CTCTAAATGATGAATGCTCCAGAAACTGGGTTGGTA...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR TCA 90 bp CAAGTATTTTGGAACCCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATTGGGCAGATCTGACTTaGGGAAATATCTGTCAGGAA +
Preference number: 2 (lower is better)
Translates to: QVFWNPALCFILLSHSLNWADLT*GNICQE
Trigger: TTCCTGACAGATATTTCCTCAAGTCAGATCTGCCCA...ATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGGGTTCCAAAATACTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR TCA 90 bp TATGTTCAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGTGGGCAGATCTGACTTaGGGAAATATCTGTCAGGAA +
Preference number: 2 (lower is better)
Translates to: YVQNVQVSISDKLRKIERWADLT*GNICQE
Trigger: TTCCTGACAGATATTTCCTCAAGTCAGATCTGCCCA...CCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTGAACATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR GCA 90 bp CAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAGCAAAAAAATTACACTGCCTTaGCTCTATCTTGTGCTTACC +
Preference number: 2 (lower is better)
Translates to: QNVQVSISDKLRKIERSKKITLP*LYLVLT
Trigger: GGTAAGCACAAGATAGAGGCAAGGCAGTGTAATTTT...TTTGCTCCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTG
38% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR GCA 90 bp CAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAGCAAACTTTTAAAATTACACTaGCTTGCCTCTATCTTGTGC +
Preference number: 2 (lower is better)
Translates to: QNVQVSISDKLRKIERSKLLKLH*LASILC
Trigger: GCACAAGATAGAGGCAAGGCAGTGTAATTTTAAAAG...TTTGCTCCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR CAA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCCTGGGCAGATCTGACTaGAGGAAATATCTGTCAGGA +
Preference number: 3 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLLGRSD*RKYLSG
Trigger: TCCTGACAGATATTTCCTCAAGTCAGATCTGCCCAG...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR TCA 72 bp ACACATATATCAGAGGCAGTGATGACTGGGCAGATCTaGCTTGAGGAAATATCTGTCAGGAAGTCACTCCTA +
Preference number: 3 (lower is better)
Translates to: THISEAVMTGQI*LEEISVRKSLL
Trigger: TAGGAGTGACTTCCTGACAGATATTTCCTCAAGTCAGATCTGCCCAGTCATCACTGCCTCTGATATATGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR CAA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGCTGGGCAGATCTGACTaGAGGAAATATCTGTCAGGA +
Preference number: 3 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQLGRSD*RKYLSG
Trigger: TCCTGACAGATATTTCCTCAAGTCAGATCTGCCCAG...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR CCA 72 bp GCCTTGCCTCTATCTTGTGCTTACCAACCCAGTTTCTaGAGCATTCATCATTTAGAGCTTCATCATTTAGAG +
Preference number: 3 (lower is better)
Translates to: ALPLSCAYQPSF*SIHHLELHHLE
Trigger: CTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAAACTGGGTTGGTAAGCACAAGATAGAGGCAAGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR CAA 90 bp TTCTGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATTCCCTAAATATGCTCTaGAACTTGGTAGGCAAATGC +
Preference number: 3 (lower is better)
Translates to: FWSIHHLELHHLEQWCPYSLNML*NLVGKC
Trigger: GCATTTGCCTACCAAGTTCAAGAGCATATTTAGGGA...ATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR GCA 72 bp ATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTaGCCCTATCCTGTTCCATGGCCATTCCCATTATTT +
Preference number: 3 (lower is better)
Translates to: IHHLELHHLEQW*PYPVPWPFPLF
Trigger: AAATAATGGGAATGGCCATGGAACAGGATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR CAA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTAATATGCTCTTGAACTaGGTAGGCAAATGCTGTAAC +
Preference number: 3 (lower is better)
Translates to: GSSTSQAHQIKSATTPNANMLLN*VGKCCN
Trigger: GTTACAGCATTTGCCTACCAAGTTCAAGAGCATATT...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR CAA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCAATATGCTCTTGAACTaGGTAGGCAAATGCTGTAAC +
Preference number: 3 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLNMLLN*VGKCCN
Trigger: GTTACAGCATTTGCCTACCAAGTTCAAGAGCATATT...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR-3UTR CAA 90 bp CAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAGCAAATGCCTTGCCTCTATCTaGTGCTTACCAACCCAGTTT +
Preference number: 3 (lower is better)
Translates to: QNVQVSISDKLRKIERSKCLASI*CLPTQF
Trigger: AAACTGGGTTGGTAAGCACAAGATAGAGGCAAGGCA...TTTGCTCCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR TCA 72 bp TTCCCATTATTTCAACTGTGTTTTCCTATCCTGTCATaGCATAGACTCAACAGGATAATCCATGGCACCAAG +
Preference number: 3 (lower is better)
Translates to: FPLFQLCFPILS*HRLNRIIHGTK
Trigger: CTTGGTGCCATGGATTATCCTGTTGAGTCTATGTCATGACAGGATAGGAAAACACAGTTGAAATAATGGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR GCA 72 bp GTCCTTTTAAAATTACACTGCCTTGCCTCTATCTTGTaGTTACCAACCCAGTTTCTGGAGCATTCATCATTT +
Preference number: 3 (lower is better)
Translates to: VLLKLHCLASIL*LPTQFLEHSSF
Trigger: AAATGATGAATGCTCCAGAAACTGGGTTGGTAAGCACAAGATAGAGGCAAGGCAGTGTAATTTTAAAAGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR GCA 72 bp ACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATaGTGCTATTTCTGCTCAGAATACTTAGTTACTCTT +
Preference number: 3 (lower is better)
Translates to: TGSSNQKCNYTK*CYFCSEYLVTL
Trigger: AAGAGTAACTAAGTATTCTGAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp TGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATCCTCCGGGAAACCAGCTGTaGACTGTAGAAGGCCGGCCT +
Preference number: 4 (lower is better)
Translates to: WSIHHLELHHLEQWCPYPPGNQL*TVEGRP
Trigger: AGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGG...AGGATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTCCGGGAAACCAGCTGTaGACTGTAGAAGGCCGGCCT +
Preference number: 4 (lower is better)
Translates to: GSSTSQAHQIKSATTPNAPGNQL*TVEGRP
Trigger: AGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGG...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCCTGACTTCCTGTGGGTaGGAGAGCTGCAGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLLTSCG*ESCSGS
Trigger: ACTCCCACTGCAGCTCTCTCACCCACAGGAAGTCAG...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp TGTAACCCACTATACACATATATCAGAGGCAGTGATGACTGGGCAGATCTGACTCACTGCAGACATGGTTaGCGGCAACACACACTCTGG +
Preference number: 4 (lower is better)
Translates to: CNPLYTYIRGSDDWADLTHCRHG*RQHTLW
Trigger: CCAGAGTGTGTGTTGCCGTCAACCATGTCTGCAGTG...AGTCAGATCTGCCCAGTCATCACTGCCTCTGATATATGTGTATAGTGGGTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp AGGGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGGGCAGAAGCGGCAGGTaGTTTCCCATGTTGTGCGCA +
Preference number: 4 (lower is better)
Translates to: RDLAHHRLIKSKVQLHQMGRSGR*FPMLCA
Trigger: TGCGCACAACATGGGAAACCACCTGCCGCTTCTGCC...CATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCGGCAGAAGCGGCAGGTaGTTTCCCATGTTGTGCGCA +
Preference number: 4 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLGRSGR*FPMLCA
Trigger: TGCGCACAACATGGGAAACCACCTGCCGCTTCTGCC...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp TGTAACCCACTATACACATATATCAGAGGCAGTGATGACTGGGCAGATCTGACTCATGCTGACTTCCTGTaGGTGAGAGAGCTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: CNPLYTYIRGSDDWADLTHADFL*VRELQW
Trigger: CCACTGCAGCTCTCTCACCCACAGGAAGTCAGCATG...AGTCAGATCTGCCCAGTCATCACTGCCTCTGATATATGTGTATAGTGGGTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp AGTTTCTGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTCCCAGGTATGTATGTaGGGTTGGCAGACTGGTGTC +
Preference number: 4 (lower is better)
Translates to: SFWSIHHLELHHLEQWCPSQVCM*GWQTGV
Trigger: GACACCAGTCTGCCAACCTCACATACATACCTGGGA...GGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTAGTTCCGCACCATGCTaGCTTCCTGTGGGTGAGAGA +
Preference number: 4 (lower is better)
Translates to: GSSTSQAHQIKSATTPNASSAPC*LPVGER
Trigger: TCTCTCACCCACAGGAAGTCAGCATGGTGCGGAACT...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp AGTTTCTGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCGGCTTGCACAGATCTTaGACTGGGCAATGGTCCATG +
Preference number: 4 (lower is better)
Translates to: SFWSIHHLELHHLEQWCPGLHRS*TGQWSM
Trigger: CATGGACCATTGCCCAGTGCAAGATCTGTGCAAGCC...GGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGAGGACTGGGATCACCTaGCAGCTGTCGTCGTCATGC +
Preference number: 4 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQRTGIT*QLSSSC
Trigger: GCATGACGACGACAGCTGCCAGGTGATCCCAGTCCT...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCCATGCTGACTTCCTGTaGGTGAGAGAGCTGCAGTGG +
Preference number: 4 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLHADFL*VRELQW
Trigger: CCACTGCAGCTCTCTCACCCACAGGAAGTCAGCATG...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGCACTGCAGACATGGTTaGCGGCAACACACACTCTGG +
Preference number: 4 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQHCRHG*RQHTLW
Trigger: CCAGAGTGTGTGTTGCCGTCAACCATGTCTGCAGTG...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp TGTAACCCACTATACACATATATCAGAGGCAGTGATGACTGGGCAGATCTGACTCCATCCAATATGGCTTaGACAGATCTTGCACTGGGC +
Preference number: 4 (lower is better)
Translates to: CNPLYTYIRGSDDWADLTPSNMA*TDLALG
Trigger: GCCCAGTGCAAGATCTGTGCAAGCCATATTGGATGG...AGTCAGATCTGCCCAGTCATCACTGCCTCTGATATATGTGTATAGTGGGTTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp TGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATCCTCCATCCAATATGGCTTaGACAGATCTTGCACTGGGC +
Preference number: 4 (lower is better)
Translates to: WSIHHLELHHLEQWCPYPPSNMA*TDLALG
Trigger: GCCCAGTGCAAGATCTGTGCAAGCCATATTGGATGG...AGGATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCTTCATCTTCACTGTCTaGAGGCAGAAGCGGCAGGTG +
Preference number: 4 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLFIFTV*RQKRQV
Trigger: CACCTGCCGCTTCTGCCTGCAGACAGTGAAGATGAA...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCGTGAGAGAGCTGCAGTaGGAGTGTCTGCCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFVRELQ*ECLPRN
Trigger: ATTCCTGGGCAGACACTCCCACTGCAGCTCTCTCAC...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp CAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAGCAAACTGACTTCCTGTGGGTaGGAGAGCTGCAGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: QNVQVSISDKLRKIERSKLTSCG*ESCSGS
Trigger: ACTCCCACTGCAGCTCTCTCACCCACAGGAAGTCAG...TTTGCTCCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCAGTGGGAGTGTCTaGCCAGGAATCAGGATCATC +
Preference number: 4 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFCSGSV*PGIRII
Trigger: GATGATCCTGATTCCTGGGCAGACACTCCCACTGCA...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGGGCTTGCACAGATCTTaGACTGGGCAATGGTCCATG +
Preference number: 4 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQGLHRS*TGQWSM
Trigger: CATGGACCATTGCCCAGTGCAAGATCTGTGCAAGCC...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp TGTAACCCACTATACACATATATCAGAGGCAGTGATGACTGGGCAGATCTGACTCGGCAACACACACTCTaGCAAAATCTGCACTTTAGC +
Preference number: 4 (lower is better)
Translates to: CNPLYTYIRGSDDWADLTRQHTL*QNLHFS
Trigger: GCTAAAGTGCAGATTTTGCCAGAGTGTGTGTTGCCG...AGTCAGATCTGCCCAGTCATCACTGCCTCTGATATATGTGTATAGTGGGTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCACTGCACTGCAGACATaGTTGACGGCAACACACACT +
Preference number: 4 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLTALQT*LTATHT
Trigger: AGTGTGTGTTGCCGTCAACCATGTCTGCAGTGCAGT...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTCAGTCTCTGGAATTGTaGGTAACAGAGCAGAGCGAG +
Preference number: 4 (lower is better)
Translates to: GSSTSQAHQIKSATTPNAQSLEL*VTEQSE
Trigger: CTCGCTCTGCTCTGTTACCCACAATTCCAGAGACTG...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCCAGTCTCTGGAATTGTaGGTAACAGAGCAGAGCGAG +
Preference number: 4 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLQSLEL*VTEQSE
Trigger: CTCGCTCTGCTCTGTTACCCACAATTCCAGAGACTG...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp ACTCAACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACTCCCAGGTATGTATGTaGGGTTGGCAGACTGGTGTC +
Preference number: 4 (lower is better)
Translates to: TQQDNPWHQATKKQVFWNSQVCM*GWQTGV
Trigger: GACACCAGTCTGCCAACCTCACATACATACCTGGGA...GTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTTGAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp CCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATATGCTCTTGAACTTGAGTTCCGCACCATGCTaGCTTCCTGTGGGTGAGAGA +
Preference number: 4 (lower is better)
Translates to: PALCFILLSHSLNMLLNLSSAPC*LPVGER
Trigger: TCTCTCACCCACAGGAAGTCAGCATGGTGCGGAACT...CAAGTTCAAGAGCATATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp AGGGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGTTGCTGGATTCCATCTaGCTGTGTTCGAAGTTCGAG +
Preference number: 4 (lower is better)
Translates to: RDLAHHRLIKSKVQLHQMLLDSI*LCSKFE
Trigger: CTCGAACTTCGAACACAGTCAGATGGAATCCAGCAA...CATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTTTGCTGGATTCCATCTaGCTGTGTTCGAAGTTCGAG +
Preference number: 4 (lower is better)
Translates to: GSSTSQAHQIKSATTPNALLDSI*LCSKFE
Trigger: CTCGAACTTCGAACACAGTCAGATGGAATCCAGCAA...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATATGCTCTTGAACTTGGTGAGAGAGCTGCAGTaGGAGTGTCTGCCCAGGAAT +
Preference number: 4 (lower is better)
Translates to: PALCFILLSHSLNMLLNLVRELQ*ECLPRN
Trigger: ATTCCTGGGCAGACACTCCCACTGCAGCTCTCTCAC...CAAGTTCAAGAGCATATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp TGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATCCTAAGGTCCTGTCTTTCTaGATTAAGTTCCGCACCATG +
Preference number: 4 (lower is better)
Translates to: WSIHHLELHHLEQWCPYPKVLSF*IKFRTM
Trigger: CATGGTGCGGAACTTAATCCAGAAAGACAGGACCTT...AGGATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp TTCTGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATCGGCAACACACACTCTaGCAAAATCTGCACTTTAGC +
Preference number: 4 (lower is better)
Translates to: FWSIHHLELHHLEQWCPYRQHTL*QNLHFS
Trigger: GCTAAAGTGCAGATTTTGCCAGAGTGTGTGTTGCCG...ATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCGCACAGATCTTGCACTaGGCAATGGTCCATGCATAC +
Preference number: 4 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFAQILH*AMVHAY
Trigger: GTATGCATGGACCATTGCCCAGTGCAAGATCTGTGC...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGCCAGGAGATGGGTTTTaGAGGAAATACCTGGCACTT +
Preference number: 4 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQPGDGF*RKYLAL
Trigger: AAGTGCCAGGTATTTCCTTCAAAACCCATCTCCTGG...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGTCACAGCGAAGCCGTTaGATAGCACTGCCGATTTTA +
Preference number: 4 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQSQRSR*IALPIL
Trigger: TAAAATCGGCAGTGCTATTCAACGGCTTCGCTGTGA...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp TGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATCCTTTGCACATTACTGTATaGAAGGACTGCAAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: WSIHHLELHHLEQWCPYPLHITV*KDCKGP
Trigger: AGGACCTTTGCAGTCCTTGCATACAGTAATGTGCAA...AGGATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp AGGGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGATAGGCATAGATCTCTaGTGTTGTCCCAAACTGTGC +
Preference number: 4 (lower is better)
Translates to: RDLAHHRLIKSKVQLHQMIGIDL*CCPKLC
Trigger: GCACAGTTTGGGACAACAGCAGAGATCTATGCCTAT...CATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCATAGGCATAGATCTCTaGTGTTGTCCCAAACTGTGC +
Preference number: 4 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLIGIDL*CCPKLC
Trigger: GCACAGTTTGGGACAACAGCAGAGATCTATGCCTAT...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp AGGGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCCGCTGCCTTCCAATTaGTTTCACTTTCACTACTTC +
Preference number: 4 (lower is better)
Translates to: RDLAHHRLIKSKVQLHQMPLPSN*FHFHYF
Trigger: GAAGTAGTGAAAGTGAAAGCAATTGGAAGGCAGCGG...CATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGAGGACCTTGAACCGCTaGCTTCCAATTGCTTTCACT +
Preference number: 4 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQRTLNR*LPIAFT
Trigger: AGTGAAAGCAATTGGAAGGCAGCGGTTCAAGGTCCT...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp AGGGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGAAGGTCCTGTCTTTCTaGATTAAGTTCCGCACCATG +
Preference number: 4 (lower is better)
Translates to: RDLAHHRLIKSKVQLHQMKVLSF*IKFRTM
Trigger: CATGGTGCGGAACTTAATCCAGAAAGACAGGACCTT...CATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCATACCTGGCACTTATTaGGTGATTCTAACTGCACTG +
Preference number: 4 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLIPGTY*VILTAL
Trigger: CAGTGCAGTTAGAATCACTCAATAAGTGCCAGGTAT...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTATACCTGGCACTTATTaGGTGATTCTAACTGCACTG +
Preference number: 4 (lower is better)
Translates to: GSSTSQAHQIKSATTPNAIPGTY*VILTAL
Trigger: CAGTGCAGTTAGAATCACTCAATAAGTGCCAGGTAT...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp ACTCAACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCTGCCACCATTTACATaGATACTGGTCTTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: TQQDNPWHQATKKQVFWNLPPFT*ILVFPG
Trigger: TCCTGGGAAGACCAGTATTCATGTAAATGGTGGCAG...GTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTTGAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp CAAGTATTTTGGAACCCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATTGCAGTGGGAGTGTCTaGCCAGGAATCAGGATCATC +
Preference number: 4 (lower is better)
Translates to: QVFWNPALCFILLSHSLNCSGSV*PGIRII
Trigger: GATGATCCTGATTCCTGGGCAGACACTCCCACTGCA...ATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGGGTTCCAAAATACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp TTCTGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATTGTGCTTCCCTTTCTTaGACATTACTGTATGCAAGG +
Preference number: 4 (lower is better)
Translates to: FWSIHHLELHHLEQWCPYCASLS*TLLYAR
Trigger: CCTTGCATACAGTAATGTGCAAGAAAGGGAAGCACA...ATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp ACTCAACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCGCTGCCTTCCAATTaGTTTCACTTTCACTACTTC +
Preference number: 4 (lower is better)
Translates to: TQQDNPWHQATKKQVFWNPLPSN*FHFHYF
Trigger: GAAGTAGTGAAAGTGAAAGCAATTGGAAGGCAGCGG...GTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTTGAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGTGCACTTTAGCTTGCTaGATTCCATCTGACTGTGTT +
Preference number: 4 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQCTLAC*IPSDCV
Trigger: AACACAGTCAGATGGAATCCAGCAAGCTAAAGTGCA...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp TATGTTCAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGACTGCACTGCAGACATaGTTGACGGCAACACACACT +
Preference number: 4 (lower is better)
Translates to: YVQNVQVSISDKLRKIERTALQT*LTATHT
Trigger: AGTGTGTGTTGCCGTCAACCATGTCTGCAGTGCAGT...CCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTGAACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp TTCTGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATCTATCAGATTCAGGTTaGACGCTTTATACACAGTCA +
Preference number: 4 (lower is better)
Translates to: FWSIHHLELHHLEQWCPYLSDSG*TLYTQS
Trigger: TGACTGTGTATAAAGCGTCCAACCTGAATCTGATAG...ATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp TTCTGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATTGGTGTCAAAGTTTATaGTATTCGGTTTTCTGGCTT +
Preference number: 4 (lower is better)
Translates to: FWSIHHLELHHLEQWCPYWCQSL*YSVFWL
Trigger: AAGCCAGAAAACCGAATATCATAAACTTTGACACCA...ATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp CAAGTATTTTGGAACCCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATCCAGGAGATGGGTTTTaGAGGAAATACCTGGCACTT +
Preference number: 4 (lower is better)
Translates to: QVFWNPALCFILLSHSLNPGDGF*RKYLAL
Trigger: AAGTGCCAGGTATTTCCTTCAAAACCCATCTCCTGG...ATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGGGTTCCAAAATACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp TATGTTCAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGCTGCCACCATTTACATaGATACTGGTCTTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: YVQNVQVSISDKLRKIERLPPFT*ILVFPG
Trigger: TCCTGGGAAGACCAGTATTCATGTAAATGGTGGCAG...CCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTGAACATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGTTAGATTTGCACAGTaGAACTTTCTCTTCTGGTAT +
Preference number: 4 (lower is better)
Translates to: GSSTSQAHQIKSATTPNAVRFAQ*NFLFWY
Trigger: ATACCAGAAGAGAAAGTTTCACTGTGCAAATCTAAC...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp AGGGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCCGATTTTAAGGAGCTaGATTCTCAATACATCATCA +
Preference number: 4 (lower is better)
Translates to: RDLAHHRLIKSKVQLHQMPILRS*ILNTSS
Trigger: TGATGATGTATTGAGAATTCAGCTCCTTAAAATCGG...CATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp TTCTGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCTATAAGTACATTTGTTCATaGTGTCCAATTCACAGCGAA +
Preference number: 4 (lower is better)
Translates to: FWSIHHLELHHLEQWCPYKYICS*CPIHSE
Trigger: TTCGCTGTGAATTGGACATCATGAACAAATGTACTT...ATAGGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp ACTCAACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACTTGCACATTACTGTATaGAAGGACTGCAAAGGTCCT +
Preference number: 4 (lower is better)
Translates to: TQQDNPWHQATKKQVFWNLHITV*KDCKGP
Trigger: AGGACCTTTGCAGTCCTTGCATACAGTAATGTGCAA...GTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTTGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp CAAGTATTTTGGAACCCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATAGGACCTTGAACCGCTaGCTTCCAATTGCTTTCACT +
Preference number: 4 (lower is better)
Translates to: QVFWNPALCFILLSHSLNRTLNR*LPIAFT
Trigger: AGTGAAAGCAATTGGAAGGCAGCGGTTCAAGGTCCT...ATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGGGTTCCAAAATACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCCTCTTCTGGTATTTCTaGCACCATTTACATGAATAC +
Preference number: 4 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLLFWYF*HHLHEY
Trigger: GTATTCATGTAAATGGTGGCAGAAATACCAGAAGAG...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCCTATCAGATTCAGGTTaGACGCTTTATACACAGTCA +
Preference number: 4 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFLSDSG*TLYTQS
Trigger: TGACTGTGTATAAAGCGTCCAACCTGAATCTGATAG...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
3UTR CAA 72 bp AAAGTCCTTTTAAAATTACACTGCCTTGCCTCTATCTaGTGCTTACCAACCCAGTTTCTGGAGCATTCATCA +
Preference number: 4 (lower is better)
Translates to: KVLLKLHCLASI*CLPTQFLEHSS
Trigger: TGATGAATGCTCCAGAAACTGGGTTGGTAAGCACAAGATAGAGGCAAGGCAGTGTAATTTTAAAAGGACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCGTTAGATTTGCACAGTaGAACTTTCTCTTCTGGTAT +
Preference number: 4 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFVRFAQ*NFLFWY
Trigger: ATACCAGAAGAGAAAGTTTCACTGTGCAAATCTAAC...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGAAGTACATTTGTTCATaGTGTCCAATTCACAGCGAA +
Preference number: 4 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQKYICS*CPIHSE
Trigger: TTCGCTGTGAATTGGACATCATGAACAAATGTACTT...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp CCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATATGCTCTTGAACTTGTGTTGTCCCAAACTGTaGTTCCCTTTCTTGCACATT +
Preference number: 4 (lower is better)
Translates to: PALCFILLSHSLNMLLNLCCPKL*FPFLHI
Trigger: AATGTGCAAGAAAGGGAAGCACAGTTTGGGACAACA...CAAGTTCAAGAGCATATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp CCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATATGCTCTTGAACTTGTTGAGTGATTCTAACTaGACTGCAGACATGGTTGAC +
Preference number: 4 (lower is better)
Translates to: PALCFILLSHSLNMLLNLLSDSN*TADMVD
Trigger: GTCAACCATGTCTGCAGTGCAGTTAGAATCACTCAA...CAAGTTCAAGAGCATATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp CAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAGCAAATTGAGTGATTCTAACTaGACTGCAGACATGGTTGAC +
Preference number: 4 (lower is better)
Translates to: QNVQVSISDKLRKIERSKLSDSN*TADMVD
Trigger: GTCAACCATGTCTGCAGTGCAGTTAGAATCACTCAA...TTTGCTCCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp AGGGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGGCTTCTTTACTATCTTaGTCTTCAACTTCCATTTCA +
Preference number: 4 (lower is better)
Translates to: RDLAHHRLIKSKVQLHQMASLLS*SSTSIS
Trigger: TGAAATGGAAGTTGAAGACCAAGATAGTAAAGAAGC...CATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAGCAAATGCACTTTAGCTTGCTaGATTCCATCTGACTGTGTT +
Preference number: 4 (lower is better)
Translates to: QNVQVSISDKLRKIERSKCTLAC*IPSDCV
Trigger: AACACAGTCAGATGGAATCCAGCAAGCTAAAGTGCA...TTTGCTCCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp CAAGTATTTTGGAACCCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATTCATGTACATATCCATaGGGATTCACATATGCTGCC +
Preference number: 4 (lower is better)
Translates to: QVFWNPALCFILLSHSLNSCTYP*GFTYAA
Trigger: GGCAGCATATGTGAATCCTCATGGATATGTACATGA...ATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGGGTTCCAAAATACTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp TATGTTCAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGTGTTGTCCCAAACTGTaGTTCCCTTTCTTGCACATT +
Preference number: 4 (lower is better)
Translates to: YVQNVQVSISDKLRKIERCCPKL*FPFLHI
Trigger: AATGTGCAAGAAAGGGAAGCACAGTTTGGGACAACA...CCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTGAACATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCGCTTCTTTACTATCTTaGTCTTCAACTTCCATTTCA +
Preference number: 4 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFASLLS*SSTSIS
Trigger: TGAAATGGAAGTTGAAGACCAAGATAGTAAAGAAGC...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGTTTGAAGGAAATACCTaGCACTTATTGAGTGATTCT +
Preference number: 4 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQFEGNT*HLLSDS
Trigger: AGAATCACTCAATAAGTGCCAGGTATTTCCTTCAAA...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp ACTCAACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACTTTGAAGGAAATACCTaGCACTTATTGAGTGATTCT +
Preference number: 4 (lower is better)
Translates to: TQQDNPWHQATKKQVFWNFEGNT*HLLSDS
Trigger: AGAATCACTCAATAAGTGCCAGGTATTTCCTTCAAA...GTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTTGAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CCA 90 bp TATGTTCAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAATTTCCATCCAATATaGCTTGCACAGATCTTGCAC +
Preference number: 4 (lower is better)
Translates to: YVQNVQVSISDKLRKIERNFHPI*LAQILH
Trigger: GTGCAAGATCTGTGCAAGCCATATTGGATGGAAATT...CCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTGAACATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR TCA 90 bp CAAGTATTTTGGAACCCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATCCGATTTTAAGGAGCTaGATTCTCAATACATCATCA +
Preference number: 4 (lower is better)
Translates to: QVFWNPALCFILLSHSLNPILRS*ILNTSS
Trigger: TGATGATGTATTGAGAATTCAGCTCCTTAAAATCGG...ATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGGGTTCCAAAATACTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR GCA 90 bp TATGTTCAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGCTCTTCTGGTATTTCTaGCACCATTTACATGAATAC +
Preference number: 4 (lower is better)
Translates to: YVQNVQVSISDKLRKIERLFWYF*HHLHEY
Trigger: GTATTCATGTAAATGGTGGCAGAAATACCAGAAGAG...CCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTGAACATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS CCA 90 bp GAGTGTCTGCCCAGGAATCAGGATCATCAGCACCTCAGGAAGGACTaGGATCACCTGGCAGCTGTCGTCGTCATGCAAAGTTCTCCCGTG +
Preference number: 5 (lower is better)
Translates to: ECLPRNQDHQHLRKD*DHLAAVVVMQSSPV
Trigger: CACGGGAGAACTTTGCATGACGACGACAGCTGCCAGGTGATCCCAGTCCTTCCTGAGGTGCTGATGATCCTGATTCCTGGGCAGACACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 90 bp AGCACCTCAGGAAGGACTGGGATCACCTGGCAGCTGTCGTCGTCATaGAAAGTTCTCCCGTGGAACTCCTCCATATCAGCTCCCAGGTAT +
Preference number: 5 (lower is better)
Translates to: STSGRTGITWQLSSS*KVLPWNSSISAPRY
Trigger: ATACCTGGGAGCTGATATGGAGGAGTTCCACGGGAGAACTTTGCATGACGACGACAGCTGCCAGGTGATCCCAGTCCTTCCTGAGGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CCA 90 bp ACTGGGATCACCTGGCAGCTGTCGTCGTCATGCAAAGTTCTCCCGTaGAACTCCTCCATATCAGCTCCCAGGTATGTATGTGAGGTTGGC +
Preference number: 5 (lower is better)
Translates to: TGITWQLSSSCKVLP*NSSISAPRYVCEVG
Trigger: GCCAACCTCACATACATACCTGGGAGCTGATATGGAGGAGTTCCACGGGAGAACTTTGCATGACGACGACAGCTGCCAGGTGATCCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS TCA 90 bp CTGTCTTTCTGGATTAAGTTCCGCACCATGCTGACTTCCTGTGGGTaGGAGAGCTGCAGTGGGAGTGTCTGCCCAGGAATCAGGATCATC +
Preference number: 5 (lower is better)
Translates to: LSFWIKFRTMLTSCG*ESCSGSVCPGIRII
Trigger: GATGATCCTGATTCCTGGGCAGACACTCCCACTGCAGCTCTCTCACCCACAGGAAGTCAGCATGGTGCGGAACTTAATCCAGAAAGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 90 bp ATCTTGCACTGGGCAATGGTCCATGCATACCCGGGAAACCAGCTGTaGACTGTAGAAGGCCGGCCTATCAGATTCAGGTTGGACGCTTTA +
Preference number: 5 (lower is better)
Translates to: ILHWAMVHAYPGNQL*TVEGRPIRFRLDAL
Trigger: TAAAGCGTCCAACCTGAATCTGATAGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGGGTATGCATGGACCATTGCCCAGTGCAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS CCA 90 bp GTGGCTGTAAATTTCCATCCAATATGGCTTGCACAGATCTTGCACTaGGCAATGGTCCATGCATACCCGGGAAACCAGCTGTGCACTGTA +
Preference number: 5 (lower is better)
Translates to: VAVNFHPIWLAQILH*AMVHAYPGNQLCTV
Trigger: TACAGTGCACAGCTGGTTTCCCGGGTATGCATGGACCATTGCCCAGTGCAAGATCTGTGCAAGCCATATTGGATGGAAATTTACAGCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS TCA 90 bp CACACACTCTGGCAAAATCTGCACTTTAGCTTGCTGGATTCCATCTaGCTGTGTTCGAAGTTCGAGGACCTTGAACCGCTGCCTTCCAAT +
Preference number: 5 (lower is better)
Translates to: HTLWQNLHFSLLDSI*LCSKFEDLEPLPSN
Trigger: ATTGGAAGGCAGCGGTTCAAGGTCCTCGAACTTCGAACACAGTCAGATGGAATCCAGCAAGCTAAAGTGCAGATTTTGCCAGAGTGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 90 bp TGCACTGCAGACATGGTTGACGGCAACACACACTCTGGCAAAATCTaGACTTTAGCTTGCTGGATTCCATCTGACTGTGTTCGAAGTTCG +
Preference number: 5 (lower is better)
Translates to: CTADMVDGNTHSGKI*TLACWIPSDCVRSS
Trigger: CGAACTTCGAACACAGTCAGATGGAATCCAGCAAGCTAAAGTGCAGATTTTGCCAGAGTGTGTGTTGCCGTCAACCATGTCTGCAGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 90 bp GTCTTCAACTTCCATTTCAATTTCATCATCTTCATCTTCACTGTCTaGAGGCAGAAGCGGCAGGTGGTTTCCCATGTTGTGCGCAGCGTC +
Preference number: 5 (lower is better)
Translates to: VFNFHFNFIIFIFTV*RQKRQVVSHVVRSV
Trigger: GACGCTGCGCACAACATGGGAAACCACCTGCCGCTTCTGCCTGCAGACAGTGAAGATGAAGATGATGAAATTGAAATGGAAGTTGAAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCACTGCAGACATGGTaGACGGCAACACACACTCTG +
Preference number: 5 (lower is better)
Translates to: GSSTSQAHQIKSATTPNAALQTW*TATHTL
Trigger: CAGAGTGTGTGTTGCCGTCAACCATGTCTGCAGTGC...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCGCACTGCAGACATGGTaGACGGCAACACACACTCTG +
Preference number: 5 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLALQTW*TATHTL
Trigger: CAGAGTGTGTGTTGCCGTCAACCATGTCTGCAGTGC...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp TGTAACCCACTATACACATATATCAGAGGCAGTGATGACTGGGCAGATCTGACTCCCAGGAGATGGGTTTaGAAGGAAATACCTGGCACT +
Preference number: 5 (lower is better)
Translates to: CNPLYTYIRGSDDWADLTPRRWV*KEIPGT
Trigger: AGTGCCAGGTATTTCCTTCAAAACCCATCTCCTGGG...AGTCAGATCTGCCCAGTCATCACTGCCTCTGATATATGTGTATAGTGGGTTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp AGGGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGTGGCTTGCACAGATCTaGCACTGGGCAATGGTCCAT +
Preference number: 5 (lower is better)
Translates to: RDLAHHRLIKSKVQLHQMWLAQI*HWAMVH
Trigger: ATGGACCATTGCCCAGTGCAAGATCTGTGCAAGCCA...CATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS TCA 90 bp AGTTCTCCCGTGGAACTCCTCCATATCAGCTCCCAGGTATGTATGTaGGGTTGGCAGACTGGTGTCAAAGTTTATGATATTCGGTTTTCT +
Preference number: 5 (lower is better)
Translates to: SSPVELLHISSQVCM*GWQTGVKVYDIRFS
Trigger: AGAAAACCGAATATCATAAACTTTGACACCAGTCTGCCAACCTCACATACATACCTGGGAGCTGATATGGAGGAGTTCCACGGGAGAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 90 bp TGGATTCCATCTGACTGTGTTCGAAGTTCGAGGACCTTGAACCGCTaGCTTCCAATTGCTTTCACTTTCACTACTTCAATTCCAAACTCC +
Preference number: 5 (lower is better)
Translates to: WIPSDCVRSSRTLNR*LPIAFTFTTSIPNS
Trigger: GGAGTTTGGAATTGAAGTAGTGAAAGTGAAAGCAATTGGAAGGCAGCGGTTCAAGGTCCTCGAACTTCGAACACAGTCAGATGGAATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS-3UTR CAA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTCCCAGGAGATGGGTTTaGAAGGAAATACCTGGCACT +
Preference number: 5 (lower is better)
Translates to: GSSTSQAHQIKSATTPNAPRRWV*KEIPGT
Trigger: AGTGCCAGGTATTTCCTTCAAAACCCATCTCCTGGG...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTGCTCCTTCAGTCTCTGGAATaGTGGGTAACAGAGCAGAGC +
Preference number: 5 (lower is better)
Translates to: HRLIKSKVQLHQMLLFLLLQSLE*WVTEQS
Trigger: GCTCTGCTCTGTTACCCACAATTCCAGAGACTGAAG...GAGCAGAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp GGATCTAGCACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGGTATGTATGTGAGGTaGGCAGACTGGTGTCAAAGT +
Preference number: 5 (lower is better)
Translates to: GSSTSQAHQIKSATTPNAGMYVR*ADWCQS
Trigger: ACTTTGACACCAGTCTGCCAACCTCACATACATACC...AGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTGCTAGATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp TGTAACCCACTATACACATATATCAGAGGCAGTGATGACTGGGCAGATCTGACTCTGTGCTTCCCTTTCTaGCACATTACTGTATGCAAG +
Preference number: 5 (lower is better)
Translates to: CNPLYTYIRGSDDWADLTLCFPF*HITVCK
Trigger: CTTGCATACAGTAATGTGCAAGAAAGGGAAGCACAG...AGTCAGATCTGCCCAGTCATCACTGCCTCTGATATATGTGTATAGTGGGTTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp AGTTTCTGGAGCATTCATCATTTAGAGCTTCATCATTTAGAGCAGTGGTGCCCCCCTATCAGATTCAGGTaGGACGCTTTATACACAGTC +
Preference number: 5 (lower is better)
Translates to: SFWSIHHLELHHLEQWCPPIRFR*DALYTV
Trigger: GACTGTGTATAAAGCGTCCAACCTGAATCTGATAGG...GGGGCACCACTGCTCTAAATGATGAAGCTCTAAATGATGAATGCTCCAGAAACT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGTCCATCCAATATGGCTaGCACAGATCTTGCACTGGG +
Preference number: 5 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQSIQYG*HRSCTG
Trigger: CCCAGTGCAAGATCTGTGCAAGCCATATTGGATGGA...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCCTTCAGTCTCTGGAATaGTGGGTAACAGAGCAGAGC +
Preference number: 5 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFLQSLE*WVTEQS
Trigger: GCTCTGCTCTGTTACCCACAATTCCAGAGACTGAAG...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS GCA 90 bp TACTTCAATTCCAAACTCCTGCTCTTCTCGATAGGCATAGATCTCTaGTGTTGTCCCAAACTGTGCTTCCCTTTCTTGCACATTACTGTA +
Preference number: 5 (lower is better)
Translates to: YFNSKLLLFSIGIDL*CCPKLCFPFLHITV
Trigger: TACAGTAATGTGCAAGAAAGGGAAGCACAGTTTGGGACAACAGCAGAGATCTATGCCTATCGAGAAGAGCAGGAGTTTGGAATTGAAGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS-3UTR CAA 90 bp ACTCAACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCATAGATCTCTGCTGTaGTCCCAAACTGTGCTTCCC +
Preference number: 5 (lower is better)
Translates to: TQQDNPWHQATKKQVFWNHRSLL*SQTVLP
Trigger: GGGAAGCACAGTTTGGGACAACAGCAGAGATCTATG...GTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTTGAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTTCACAGCGAAGCCGTaGAATAGCACTGCCGATTTT +
Preference number: 5 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFFTAKP*NSTADF
Trigger: AAAATCGGCAGTGCTATTCAACGGCTTCGCTGTGAA...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp TGTAACCCACTATACACATATATCAGAGGCAGTGATGACTGGGCAGATCTGACTTCACATATGCTGCCATaGGACCACATAAGGATAAAC +
Preference number: 5 (lower is better)
Translates to: CNPLYTYIRGSDDWADLTSHMLP*DHIRIN
Trigger: GTTTATCCTTATGTGGTCCAATGGCAGCATATGTGA...AGTCAGATCTGCCCAGTCATCACTGCCTCTGATATATGTGTATAGTGGGTTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAGCAAATGGCTTGCACAGATCTaGCACTGGGCAATGGTCCAT +
Preference number: 5 (lower is better)
Translates to: QNVQVSISDKLRKIERSKWLAQI*HWAMVH
Trigger: ATGGACCATTGCCCAGTGCAAGATCTGTGCAAGCCA...TTTGCTCCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS TCA 90 bp AGGTTGGACGCTTTATACACAGTCAGTGTCTCATGTACATATCCATaGGGATTCACATATGCTGCCATTGGACCACATAAGGATAAACTA +
Preference number: 5 (lower is better)
Translates to: RLDALYTVSVSCTYP*GFTYAAIGPHKDKL
Trigger: TAGTTTATCCTTATGTGGTCCAATGGCAGCATATGTGAATCCTCATGGATATGTACATGAGACACTGACTGTGTATAAAGCGTCCAACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATATGCTCTTGAACTTGGGTATGTATGTGAGGTaGGCAGACTGGTGTCAAAGT +
Preference number: 5 (lower is better)
Translates to: PALCFILLSHSLNMLLNLGMYVR*ADWCQS
Trigger: ACTTTGACACCAGTCTGCCAACCTCACATACATACC...CAAGTTCAAGAGCATATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp ACTCAACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCTGTGCTTCCCTTTCTaGCACATTACTGTATGCAAG +
Preference number: 5 (lower is better)
Translates to: TQQDNPWHQATKKQVFWNLCFPF*HITVCK
Trigger: CTTGCATACAGTAATGTGCAAGAAAGGGAAGCACAG...GTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTTGAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAGCAAATTCACAGCGAAGCCGTaGAATAGCACTGCCGATTTT +
Preference number: 5 (lower is better)
Translates to: QNVQVSISDKLRKIERSKFTAKP*NSTADF
Trigger: AAAATCGGCAGTGCTATTCAACGGCTTCGCTGTGAA...TTTGCTCCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CACATCACAGGCTCATCAAATCAAAAGTGCAACTACACCAAATGCTGCTATTTCTCACATATGCTGCCATaGGACCACATAAGGATAAAC +
Preference number: 5 (lower is better)
Translates to: HITGSSNQKCNYTKCCYFSHMLP*DHIRIN
Trigger: GTTTATCCTTATGTGGTCCAATGGCAGCATATGTGA...GAAATAGCAGCATTTGGTGTAGTTGCACTTTTGATTTGATGAGCCTGTGATGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp TATGTTCAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGTCCATCCAATATGGCTaGCACAGATCTTGCACTGGG +
Preference number: 5 (lower is better)
Translates to: YVQNVQVSISDKLRKIERSIQYG*HRSCTG
Trigger: CCCAGTGCAAGATCTGTGCAAGCCATATTGGATGGA...CCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTGAACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp AACAGGATAATCCATGGCACCAAGCTACTAAAAAGCAAGTATTTTGGAACCCAGGCCATGATGTTAGATTaGCACAGTGAAACTTTCTCT +
Preference number: 5 (lower is better)
Translates to: NRIIHGTKLLKSKYFGTQAMMLD*HSETFS
Trigger: AGAGAAAGTTTCACTGTGCAAATCTAACATCATGGC...CTGGGTTCCAAAATACTTGCTTTTTAGTAGCTTGGTGCCATGGATTATCCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATATGCTCTTGAACTTGCCTATCAGATTCAGGTaGGACGCTTTATACACAGTC +
Preference number: 5 (lower is better)
Translates to: PALCFILLSHSLNMLLNLPIRFR*DALYTV
Trigger: GACTGTGTATAAAGCGTCCAACCTGAATCTGATAGG...CAAGTTCAAGAGCATATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATATGCTCTTGAACTTGAATACCTGGCACTTATaGAGTGATTCTAACTGCACT +
Preference number: 5 (lower is better)
Translates to: PALCFILLSHSLNMLLNLNTWHL*SDSNCT
Trigger: AGTGCAGTTAGAATCACTCAATAAGTGCCAGGTATT...CAAGTTCAAGAGCATATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATATGCTCTTGAACTTGGCCATGATGTTAGATTaGCACAGTGAAACTTTCTCT +
Preference number: 5 (lower is better)
Translates to: PALCFILLSHSLNMLLNLAMMLD*HSETFS
Trigger: AGAGAAAGTTTCACTGTGCAAATCTAACATCATGGC...CAAGTTCAAGAGCATATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp TATGTTCAAAATGTACAGGTCAGTATCTCAGACAAGCTAAGGAAAATTGAAAGGAATACCTGGCACTTATaGAGTGATTCTAACTGCACT +
Preference number: 5 (lower is better)
Translates to: YVQNVQVSISDKLRKIERNTWHL*SDSNCT
Trigger: AGTGCAGTTAGAATCACTCAATAAGTGCCAGGTATT...CCTTTCAATTTTCCTTAGCTTGTCTGAGATACTGACCTGTACATTTTGAACATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS-3UTR CAA 90 bp CAAGTATTTTGGAACCCAGCCTTATGTTTTATACTGCTTTCTCATTCCCTAAATTTCTGTTTCTTGACATaGTTTACAGCAAAGGGAAGT +
Preference number: 5 (lower is better)
Translates to: QVFWNPALCFILLSHSLNFCFLT*FTAKGS
Trigger: ACTTCCCTTTGCTGTAAACAATGTCAAGAAACAGAA...ATTTAGGGAATGAGAAAGCAGTATAAAACATAAGGCTGGGTTCCAAAATACTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS TCA 72 bp TGGATTAAGTTCCGCACCATGCTGACTTCCTGTGGGTaGGAGAGCTGCAGTGGGAGTGTCTGCCCAGGAATC +
Preference number: 6 (lower is better)
Translates to: WIKFRTMLTSCG*ESCSGSVCPGI
Trigger: GATTCCTGGGCAGACACTCCCACTGCAGCTCTCTCACCCACAGGAAGTCAGCATGGTGCGGAACTTAATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 72 bp GGAAGGACTGGGATCACCTGGCAGCTGTCGTCGTCATaGAAAGTTCTCCCGTGGAACTCCTCCATATCAGCT +
Preference number: 6 (lower is better)
Translates to: GRTGITWQLSSS*KVLPWNSSISA
Trigger: AGCTGATATGGAGGAGTTCCACGGGAGAACTTTGCATGACGACGACAGCTGCCAGGTGATCCCAGTCCTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 72 bp TGGGCAATGGTCCATGCATACCCGGGAAACCAGCTGTaGACTGTAGAAGGCCGGCCTATCAGATTCAGGTTG +
Preference number: 6 (lower is better)
Translates to: WAMVHAYPGNQL*TVEGRPIRFRL
Trigger: CAACCTGAATCTGATAGGCCGGCCTTCTACAGTGCACAGCTGGTTTCCCGGGTATGCATGGACCATTGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS CCA 72 bp CCCAGGAATCAGGATCATCAGCACCTCAGGAAGGACTaGGATCACCTGGCAGCTGTCGTCGTCATGCAAAGT +
Preference number: 6 (lower is better)
Translates to: PRNQDHQHLRKD*DHLAAVVVMQS
Trigger: ACTTTGCATGACGACGACAGCTGCCAGGTGATCCCAGTCCTTCCTGAGGTGCTGATGATCCTGATTCCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CCA 72 bp ACCTGGCAGCTGTCGTCGTCATGCAAAGTTCTCCCGTaGAACTCCTCCATATCAGCTCCCAGGTATGTATGT +
Preference number: 6 (lower is better)
Translates to: TWQLSSSCKVLP*NSSISAPRYVC
Trigger: ACATACATACCTGGGAGCTGATATGGAGGAGTTCCACGGGAGAACTTTGCATGACGACGACAGCTGCCAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CCA 72 bp ATCCAATATGGCTTGCACAGATCTTGCACTGGGCAATaGTCCATGCATACCCGGGAAACCAGCTGTGCACTG +
Preference number: 6 (lower is better)
Translates to: IQYGLHRSCTGQ*SMHTRETSCAL
Trigger: CAGTGCACAGCTGGTTTCCCGGGTATGCATGGACCATTGCCCAGTGCAAGATCTGTGCAAGCCATATTGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS CCA 72 bp AATTTCCATCCAATATGGCTTGCACAGATCTTGCACTaGGCAATGGTCCATGCATACCCGGGAAACCAGCTG +
Preference number: 6 (lower is better)
Translates to: NFHPIWLAQILH*AMVHAYPGNQL
Trigger: CAGCTGGTTTCCCGGGTATGCATGGACCATTGCCCAGTGCAAGATCTGTGCAAGCCATATTGGATGGAAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS TCA 72 bp TGGCAAAATCTGCACTTTAGCTTGCTGGATTCCATCTaGCTGTGTTCGAAGTTCGAGGACCTTGAACCGCTG +
Preference number: 6 (lower is better)
Translates to: WQNLHFSLLDSI*LCSKFEDLEPL
Trigger: CAGCGGTTCAAGGTCCTCGAACTTCGAACACAGTCAGATGGAATCCAGCAAGCTAAAGTGCAGATTTTGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 72 bp TCCAAACTCCTGCTCTTCTCGATAGGCATAGATCTCTaGTGTTGTCCCAAACTGTGCTTCCCTTTCTTGCAC +
Preference number: 6 (lower is better)
Translates to: SKLLLFSIGIDL*CCPKLCFPFLH
Trigger: GTGCAAGAAAGGGAAGCACAGTTTGGGACAACAGCAGAGATCTATGCCTATCGAGAAGAGCAGGAGTTTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 72 bp GGCAACACACACTCTGGCAAAATCTGCACTTTAGCTTaGTGGATTCCATCTGACTGTGTTCGAAGTTCGAGG +
Preference number: 6 (lower is better)
Translates to: GNTHSGKICTLA*WIPSDCVRSSR
Trigger: CCTCGAACTTCGAACACAGTCAGATGGAATCCAGCAAGCTAAAGTGCAGATTTTGCCAGAGTGTGTGTTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CCA 72 bp TTACTGTATGCAAGGACTGCAAAGGTCCTGTCTTTCTaGATTAAGTTCCGCACCATGCTGACTTCCTGTGGG +
Preference number: 6 (lower is better)
Translates to: LLYARTAKVLSF*IKFRTMLTSCG
Trigger: CCCACAGGAAGTCAGCATGGTGCGGAACTTAATCCAGAAAGACAGGACCTTTGCAGTCCTTGCATACAGTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CAA 72 bp CTGTGCACTGTAGAAGGCCGGCCTATCAGATTCAGGTaGGACGCTTTATACACAGTCAGTGTCTCATGTACA +
Preference number: 6 (lower is better)
Translates to: LCTVEGRPIRFR*DALYTVSVSCT
Trigger: TGTACATGAGACACTGACTGTGTATAAAGCGTCCAACCTGAATCTGATAGGCCGGCCTTCTACAGTGCACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS CAA 90 bp TGGTCTTCCCAGGAGATGGGTTTTGAAGGAAATACCTGGCACTTATaGAGTGATTCTAACTGCACTGCAGACATGGTTGACGGCAACACA +
Preference number: 6 (lower is better)
Translates to: WSSQEMGFEGNTWHL*SDSNCTADMVDGNT
Trigger: TGTGTTGCCGTCAACCATGTCTGCAGTGCAGTTAGAATCACTCAATAAGTGCCAGGTATTTCCTTCAAAACCCATCTCCTGGGAAGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS TCA 72 bp GGATTCCATCTGACTGTGTTCGAAGTTCGAGGACCTTaGACCGCTGCCTTCCAATTGCTTTCACTTTCACTA +
Preference number: 6 (lower is better)
Translates to: GFHLTVFEVRGP*TAAFQLLSLSL
Trigger: TAGTGAAAGTGAAAGCAATTGGAAGGCAGCGGTTCAAGGTCCTCGAACTTCGAACACAGTCAGATGGAATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 72 bp ATCTCTGCTGTTGTCCCAAACTGTGCTTCCCTTTCTTaGACATTACTGTATGCAAGGACTGCAAAGGTCCTG +
Preference number: 6 (lower is better)
Translates to: ISAVVPNCASLS*TLLYARTAKVL
Trigger: CAGGACCTTTGCAGTCCTTGCATACAGTAATGTGCAAGAAAGGGAAGCACAGTTTGGGACAACAGCAGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CCA 72 bp AACACACACTCTGGCAAAATCTGCACTTTAGCTTGCTaGATTCCATCTGACTGTGTTCGAAGTTCGAGGACC +
Preference number: 6 (lower is better)
Translates to: NTHSGKICTLAC*IPSDCVRSSRT
Trigger: GGTCCTCGAACTTCGAACACAGTCAGATGGAATCCAGCAAGCTAAAGTGCAGATTTTGCCAGAGTGTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CAA 72 bp ACTCCTGCTCTTCTCGATAGGCATAGATCTCTGCTGTaGTCCCAAACTGTGCTTCCCTTTCTTGCACATTAC +
Preference number: 6 (lower is better)
Translates to: TPALLDRHRSLL*SQTVLPFLAHY
Trigger: GTAATGTGCAAGAAAGGGAAGCACAGTTTGGGACAACAGCAGAGATCTATGCCTATCGAGAAGAGCAGGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CAA 72 bp TGGATTCCATCTGACTGTGTTCGAAGTTCGAGGACCTaGAACCGCTGCCTTCCAATTGCTTTCACTTTCACT +
Preference number: 6 (lower is better)
Translates to: WIPSDCVRSSRT*NRCLPIAFTFT
Trigger: AGTGAAAGTGAAAGCAATTGGAAGGCAGCGGTTCAAGGTCCTCGAACTTCGAACACAGTCAGATGGAATCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS GCA 72 bp GAAGGAAATACCTGGCACTTATTGAGTGATTCTAACTaGACTGCAGACATGGTTGACGGCAACACACACTCT +
Preference number: 6 (lower is better)
Translates to: EGNTWHLLSDSN*TADMVDGNTHS
Trigger: AGAGTGTGTGTTGCCGTCAACCATGTCTGCAGTGCAGTTAGAATCACTCAATAAGTGCCAGGTATTTCCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CAA 90 bp CAATTCCAAACTCCTGCTCTTCTCGATAGGCATAGATCTCTGCTGTaGTCCCAAACTGTGCTTCCCTTTCTTGCACATTACTGTATGCAA +
Preference number: 6 (lower is better)
Translates to: QFQTPALLDRHRSLL*SQTVLPFLAHYCMQ
Trigger: TTGCATACAGTAATGTGCAAGAAAGGGAAGCACAGTTTGGGACAACAGCAGAGATCTATGCCTATCGAGAAGAGCAGGAGTTTGGAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CAA 90 bp TTAGCTTGCTGGATTCCATCTGACTGTGTTCGAAGTTCGAGGACCTaGAACCGCTGCCTTCCAATTGCTTTCACTTTCACTACTTCAATT +
Preference number: 6 (lower is better)
Translates to: LACWIPSDCVRSSRT*NRCLPIAFTFTTSI
Trigger: AATTGAAGTAGTGAAAGTGAAAGCAATTGGAAGGCAGCGGTTCAAGGTCCTCGAACTTCGAACACAGTCAGATGGAATCCAGCAAGCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS TCA 72 bp GTGGAACTCCTCCATATCAGCTCCCAGGTATGTATGTaGGGTTGGCAGACTGGTGTCAAAGTTTATGATATT +
Preference number: 6 (lower is better)
Translates to: VELLHISSQVCM*GWQTGVKVYDI
Trigger: AATATCATAAACTTTGACACCAGTCTGCCAACCTCACATACATACCTGGGAGCTGATATGGAGGAGTTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CAA 72 bp CAGGAGATGGGTTTTGAAGGAAATACCTGGCACTTATaGAGTGATTCTAACTGCACTGCAGACATGGTTGAC +
Preference number: 6 (lower is better)
Translates to: QEMGFEGNTWHL*SDSNCTADMVD
Trigger: GTCAACCATGTCTGCAGTGCAGTTAGAATCACTCAATAAGTGCCAGGTATTTCCTTCAAAACCCATCTCCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
ENSMUST00000151484.7
CDS CAA 72 bp CTTTGTCTGGACTTATTTCATCTTCAGTCTCTGGAATaGTGGGTAACAGAGCAGAGCGAGTTAAGCCCCAAA +
Preference number: 6 (lower is better)
Translates to: LCLDLFHLQSLE*WVTEQSELSPK
Trigger: TTTGGGGCTTAACTCGCTCTGCTCTGTTACCCACAATTCCAGAGACTGAAGATGAAATAAGTCCAGACAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS CCA 72 bp TGTCTGGACTTATTTCATCTTCAGTCTCTGGAATTGTaGGTAACAGAGCAGAGCGAGTTAAGCCCCAAAATT +
Preference number: 6 (lower is better)
Translates to: CLDLFHLQSLEL*VTEQSELSPKI
Trigger: AATTTTGGGGCTTAACTCGCTCTGCTCTGTTACCCACAATTCCAGAGACTGAAGATGAAATAAGTCCAGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS TCA 72 bp GCTTTATACACAGTCAGTGTCTCATGTACATATCCATaGGGATTCACATATGCTGCCATTGGACCACATAAG +
Preference number: 6 (lower is better)
Translates to: ALYTVSVSCTYP*GFTYAAIGPHK
Trigger: CTTATGTGGTCCAATGGCAGCATATGTGAATCCTCATGGATATGTACATGAGACACTGACTGTGTATAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS CAA 72 bp ACATTTGTTCATGATGTCCAATTCACAGCGAAGCCGTaGAATAGCACTGCCGATTTTAAGGAGCTGAATTCT +
Preference number: 6 (lower is better)
Translates to: TFVHDVQFTAKP*NSTADFKELNS
Trigger: AGAATTCAGCTCCTTAAAATCGGCAGTGCTATTCAACGGCTTCGCTGTGAATTGGACATCATGAACAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10
CDS CAA 90 bp AAGGGAAGTACATTTGTTCATGATGTCCAATTCACAGCGAAGCCGTaGAATAGCACTGCCGATTTTAAGGAGCTGAATTCTCAATACATC +
Preference number: 6 (lower is better)
Translates to: KGSTFVHDVQFTAKP*NSTADFKELNSQYI
Trigger: GATGTATTGAGAATTCAGCTCCTTAAAATCGGCAGTGCTATTCAACGGCTTCGCTGTGAATTGGACATCATGAACAAATGTACTTCCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013882.10
ENSMUST00000113239.10