Pregenerated sensors for CRB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044279Ensembl transcript IDs: ENSMUST00000071826.10, ENSMUST00000097299.10, ENSMUST00000163628.2, ENSMUST00000163763.2, ENSMUST00000169543.8
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AACCCAAGTCCTCCTGAGTCACTGGAGGCTGGCGCGTCTCCGAGGTaGCTGCTGTGTGGTAGGGCGTGCCAAGGCAGTCCCAGGCGTTGG | + |
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Preference number: 1 (lower is better) Translates to: NPSPPESLEAGASPR*LLCGRACQGSPRRW Trigger: CCAACGCCTGGGACTGCCTTGGCACGCCCTACCACACAGCAGCCACCTCGGAGACGCGCCAGCCTCCAGTGACTCAGGAGGACTTGGGTT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000163763.2 |
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| 3UTR-3UTR CCA 90 bp | TGGCCCCAGCACCCCCAGTTTCATGCAGAGCCAAGCAGAGGTAGCAATGCTGCAGTCCTCCTGAGTCACTaGAGGCTGGCGCGTCTCCGA | + |
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Preference number: 2 (lower is better) Translates to: WPQHPQFHAEPSRGSNAAVLLSH*RLARLR Trigger: TCGGAGACGCGCCAGCCTCCAGTGACTCAGGAGGAC...TGCAGCATTGCTACCTCTGCTTGGCTCTGCATGAAACTGGGGGTGCTGGGGCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 |
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| 3UTR-3UTR GCA 90 bp | CCCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTACCGGGCCTCAGCTGCTaGGTGGGAAAACTGAAAGAA | + |
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Preference number: 2 (lower is better) Translates to: PILLAFKVKVFEELSSLLPGLSC*VGKLKE Trigger: TTCTTTCAGTTTTCCCACGCAGCAGCTGAGGCCCGG...TAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 |
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| 3UTR-3UTR CAA 90 bp | GGCCCGGGCCTCAGCTGCTGCGTGGGAAAACTGAAAGAAAGGACAGGAGGTTTGAGGCAGTCCCAGGCGTaGGTAGTGATGATGGCCTAT | + |
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Preference number: 3 (lower is better) Translates to: GPGLSCCVGKLKERTGGLRQSQA*VVMMAY Trigger: ATAGGCCATCATCACTACCAACGCCTGGGACTGCCT...CAAACCTCCTGTCCTTTCTTTCAGTTTTCCCACGCAGCAGCTGAGGCCCGGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 |
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| 3UTR-3UTR CAA 90 bp | CCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTATAGGCAGTCCCAGGCGTaGGTAGTGATGATGGCCTAT | + |
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Preference number: 3 (lower is better) Translates to: PSCLPSKSRSLKNFLPFYRQSQA*VVMMAY Trigger: ATAGGCCATCATCACTACCAACGCCTGGGACTGCCT...ATAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 |
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| CDS-3UTR GCA 90 bp | TCTCCGAGGTGGCTGCTGTGTGGTAGGGCGTGCCAAGGCAGTCCCAGGCGTTGGTGCTGGGCCGGTAGGTaGCCTCTGTCTGCCGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: SPRWLLCGRACQGSPRRWCWAGR*PLSAAF Trigger: AAAAGCGGCAGACAGAGGGCACCTACCGGCCCAGCA...CCAACGCCTGGGACTGCCTTGGCACGCCCTACCACACAGCAGCCACCTCGGAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000163763.2 |
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| CDS-3UTR GCA 90 bp | AACCCAAGTCCTCCTGAGTCACTGGAGGCTGGCGCGTCTCCGAGGTGGCTGCTGTGCTGGGCCGGTAGGTaGCCTCTGTCTGCCGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: NPSPPESLEAGASPRWLLCWAGR*PLSAAF Trigger: AAAAGCGGCAGACAGAGGGCACCTACCGGCCCAGCA...CAGCAGCCACCTCGGAGACGCGCCAGCCTCCAGTGACTCAGGAGGACTTGGGTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000163763.2 |
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| CDS-3UTR CCA 90 bp | CCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTATGGCTCCTTGGAGTCCTaGGGGGCCCGGGCCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: PSCLPSKSRSLKNFLPFYGSLES*GARASA Trigger: AGCTGAGGCCCGGGCCCCCCAGGACTCCAAGGAGCC...ATAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169543.8 |
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| CDS-3UTR GCA 90 bp | CCCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTATGCTGGGCCGGTAGGTaGCCTCTGTCTGCCGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: PILLAFKVKVFEELSSLLCWAGR*PLSAAF Trigger: AAAAGCGGCAGACAGAGGGCACCTACCGGCCCAGCA...TAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000169543.8 |
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| CDS-3UTR GCA 90 bp | CCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTATGCTGCGTGGGAAAACTaGTCCTCACTGCTGGGCCGG | + |
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Preference number: 4 (lower is better) Translates to: PSCLPSKSRSLKNFLPFYAAWEN*SSLLGR Trigger: CCGGCCCAGCAGTGAGGAGCAGTTTTCCCACGCAGC...ATAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169543.8 |
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| CDS-3UTR GCA 90 bp | CCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTATCCGGGCCTCAGCTGCTaGGTGGGAAAACTGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: PSCLPSKSRSLKNFLPFYPGLSC*VGKLLL Trigger: GAGGAGCAGTTTTCCCACGCAGCAGCTGAGGCCCGG...ATAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169543.8 |
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| CDS-3UTR GCA 90 bp | CCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTATTGCTGGGCCGGTAGGTaGCCTCTGTCTGCCGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: PSCLPSKSRSLKNFLPFYCWAGR*PLSAAF Trigger: AAAAGCGGCAGACAGAGGGCACCTACCGGCCCAGCA...ATAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000169543.8 |
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| CDS-3UTR CCA 90 bp | CCCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTAGCCTCAGCTGCTGCGTaGGAAAACTGCTCCTCACTG | + |
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Preference number: 4 (lower is better) Translates to: PILLAFKVKVFEELSSLLASAAA*ENCSSL Trigger: CAGTGAGGAGCAGTTTTCCCACGCAGCAGCTGAGGC...TAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169543.8 |
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| CDS TCA 90 bp | GGCCCCCGTTGGACTCATCACCTGGGGGTTGAGTTGTGCTATTTGTaGAAGGGTCCGGTGCTGTTAGGCTCCAGCCGGAGGGCAGCATCG | + |
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Preference number: 5 (lower is better) Translates to: GPRWTHHLGVELCYL*KGPVLLGSSRRAAS Trigger: CGATGCTGCCCTCCGGCTGGAGCCTAACAGCACCGGACCCTTTCACAAATAGCACAACTCAACCCCCAGGTGATGAGTCCAACGGGGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000163763.2 ENSMUST00000169543.8 |
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| CDS-3UTR CAA 90 bp | GGTGGCTGCTGTGTGGTAGGGCGTGCCAAGGCAGTCCCAGGCGTTGGTAGTGATCTCATCACCTGGGGGTaGAGTTGTGCTATTTGTGAA | + |
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Preference number: 5 (lower is better) Translates to: GGCCVVGRAKAVPGVGSDLITWG*SCAICE Trigger: TTCACAAATAGCACAACTCAACCCCCAGGTGATGAG...ATCACTACCAACGCCTGGGACTGCCTTGGCACGCCCTACCACACAGCAGCCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000163763.2 |
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| CDS-3UTR CAA 90 bp | GGCCCGGGCCTCAGCTGCTGCGTGGGAAAACTGAAAGAAAGGACAGGAGGTTTGCTCATCACCTGGGGGTaGAGTTGTGCTATTTGTGAA | + |
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Preference number: 5 (lower is better) Translates to: GPGLSCCVGKLKERTGGLLITWG*SCAICE Trigger: TTCACAAATAGCACAACTCAACCCCCAGGTGATGAG...CAAACCTCCTGTCCTTTCTTTCAGTTTTCCCACGCAGCAGCTGAGGCCCGGGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 |
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| CDS-3UTR CAA 90 bp | CCCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTAGAAGACAGGCCCCCGTaGGACTCATCACCTGGGGGT | + |
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Preference number: 5 (lower is better) Translates to: PILLAFKVKVFEELSSLLEDRPP*DSSPGG Trigger: ACCCCCAGGTGATGAGTCCAACGGGGGCCTGTCTTC...TAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000169543.8 |
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| CDS-3UTR CAA 90 bp | AGGTTTGTTGGGCCTGCAGTCACAGTAGGAGACACAGCAGAGGCAAGGTCCTATCTCATCACCTGGGGGTaGAGTTGTGCTATTTGTGAA | + |
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Preference number: 5 (lower is better) Translates to: RFVGPAVTVGDTAEARSYLITWG*SCAICE Trigger: TTCACAAATAGCACAACTCAACCCCCAGGTGATGAG...ATAGGACCTTGCCTCTGCTGTGTCTCCTACTGTGACTGCAGGCCCAACAAACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 |
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| CDS-3UTR CAA 90 bp | CCCATCCTGCTTGCCTTCAAAGTCAAGGTCTTTGAAGAACTTTCTTCCCTTCTACTCATCACCTGGGGGTaGAGTTGTGCTATTTGTGAA | + |
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Preference number: 5 (lower is better) Translates to: PILLAFKVKVFEELSSLLLITWG*SCAICE Trigger: TTCACAAATAGCACAACTCAACCCCCAGGTGATGAG...TAGAAGGGAAGAAAGTTCTTCAAAGACCTTGACTTTGAAGGCAAGCAGGATGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000169543.8 |
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| CDS TCA 72 bp | TGGACTCATCACCTGGGGGTTGAGTTGTGCTATTTGTaGAAGGGTCCGGTGCTGTTAGGCTCCAGCCGGAGG | + |
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Preference number: 6 (lower is better) Translates to: WTHHLGVELCYL*KGPVLLGSSRR Trigger: CCTCCGGCTGGAGCCTAACAGCACCGGACCCTTTCACAAATAGCACAACTCAACCCCCAGGTGATGAGTCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000163763.2 ENSMUST00000169543.8 |
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| CDS TCA 72 bp | GAAGACAGGCCCCCGTTGGACTCATCACCTGGGGGTTaGGTTGTGCTATTTGTGAAAGGGTCCGGTGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: EDRPPLDSSPGG*VVLFVKGSGAV Trigger: AACAGCACCGGACCCTTTCACAAATAGCACAACTCAACCCCCAGGTGATGAGTCCAACGGGGGCCTGTCTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000163763.2 ENSMUST00000169543.8 |
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| CDS CCA 72 bp | AAGACCACAGTGATGGCTACAATAGCCCCTGAAGACTaGGGGTTGAGTTGTGCTATTTGTGAAAGGGTCCGG | + |
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Preference number: 6 (lower is better) Translates to: KTTVMATIAPED*GLSCAICERVR Trigger: CCGGACCCTTTCACAAATAGCACAACTCAACCCCCAGTCTTCAGGGGCTATTGTAGCCATCACTGTGGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163628.2 |
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| CDS CAA 72 bp | ACAGTGATGGCTACAATAGCCCCTGAAGACTGGGGGTaGAGTTGTGCTATTTGTGAAAGGGTCCGGTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: TVMATIAPEDWG*SCAICERVRCC Trigger: ACAGCACCGGACCCTTTCACAAATAGCACAACTCAACCCCCAGTCTTCAGGGGCTATTGTAGCCATCACTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000163628.2 |
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| CDS GCA 72 bp | TTCCCGAAGTTTTCGCATGAGCAGAAACAGTCCCACTaGTATAAGGAGGACTCCCAGAATGGAAAAGACCAC | + |
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Preference number: 6 (lower is better) Translates to: FPKFSHEQKQSH*YKEDSQNGKDH Trigger: GTGGTCTTTTCCATTCTGGGAGTCCTCCTTATAGCAGTGGGACTGTTTCTGCTCATGCGAAAACTTCGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000071826.10 ENSMUST00000097299.10 ENSMUST00000163763.2 ENSMUST00000169543.8 |
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