RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CRB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035403

Ensembl transcript IDs: ENSMUST00000050372.10, ENSMUST00000147600.3

Found 318 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACGCGCGGCCCGGGCGCGGGCAGCACCGAACCCGCCACATCTCCTaGCAGCGAGCCGTTGCGCACCGCCAACCAGATATTGGAGTGGGC +
Preference number: 1 (lower is better)
Translates to: HARPGRGQHRTRHIS*QRAVAHRQPDIGVG
Trigger: GCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGATGTGGCGGGTTCGGTGCTGCCCGCGCCCGGGCCGCGCGTG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR GCA 90 bp ACTGCACCCGGACCCTGCAGAAAGCCCAGGTCGCCGCCCAAGCCGTaGAAGGCCACGGGTGTCGCCGCGCCGTCCAGCCACAGCAGCCAG +
Preference number: 1 (lower is better)
Translates to: TAPGPCRKPRSPPKP*KATGVAAPSSHSSQ
Trigger: CTGGCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCCTTGCACGGCTTGGGCGGCGACCTGGGCTTTCTGCAGGGTCCGGGTGCAGT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR TCA 90 bp CTCGGAGTCGCGCGTGCGGAAGGCCAGGGTGAGCCCGCTGAGCGATaGGGACACGTTGTGGCCTGTGAACACAGCAGGAGGGCCCTCGCG +
Preference number: 1 (lower is better)
Translates to: LGVARAEGQGEPAER*GHVVACEHSRRALA
Trigger: CGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCTCAGCGGGCTCACCCTGGCCTTCCGCACGCGCGACTCCGAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CCA 90 bp TCTCCTGCCAGCGAGCCGTTGCGCACCGCCAACCAGATATTGGAGTaGGCACCTGCGGCGGAGACGGCGCGCAGTAGCCCAGCCTCGGAG +
Preference number: 1 (lower is better)
Translates to: SPASEPLRTANQILE*APAAETARSSPASE
Trigger: CTCCGAGGCTGGGCTACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CCA 90 bp GTGCGGAAGGCCAGGGTGAGCCCGCTGAGCGATGAGGACACGTTGTaGCCTGTGAACACAGCAGGAGGGCCCTCGCGGAACGTGGCCTCG +
Preference number: 1 (lower is better)
Translates to: VRKARVSPLSDEDTL*PVNTAGGPSRNVAS
Trigger: CGAGGCCACGTTCCGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCTCAGCGGGCTCACCCTGGCCTTCCGCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CCA 90 bp CCACATCTCCTGCCAGCGAGCCGTTGCGCACCGCCAACCAGATATTaGAGTGGGCACCTGCGGCGGAGACGGCGCGCAGTAGCCCAGCCT +
Preference number: 1 (lower is better)
Translates to: PHLLPASRCAPPTRY*SGHLRRRRRAVAQP
Trigger: AGGCTGGGCTACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGATGTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR GCA 90 bp CCCGTGAAGTTCTCAGCCAGTAGCAGAGGCACTGCACCCGGACCCTaGAGAAAGCCCAGGTCGCCGCCCAAGCCGTGCAAGGCCACGGGT +
Preference number: 1 (lower is better)
Translates to: PVKFSASSRGTAPGP*RKPRSPPKPCKATG
Trigger: ACCCGTGGCCTTGCACGGCTTGGGCGGCGACCTGGGCTTTCTGCAGGGTCCGGGTGCAGTGCCTCTGCTACTGGCTGAGAACTTCACGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR GCA 90 bp GCCAGAGAGGTAGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTaGTCAGCTACCAGGGAGCGGAGTCTCACTGGGTCGTGGGAAGCC +
Preference number: 1 (lower is better)
Translates to: AREVALLPQGSVLVV*SATRERSLTGSWEA
Trigger: GGCTTCCCACGACCCAGTGAGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCTACCTCTCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 90 bp TTGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTCACTGGGTCGTaGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCC +
Preference number: 1 (lower is better)
Translates to: LVVCSATRERSLTGS*EAFWHSGVPGQASA
Trigger: GGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGACCCAGTGAGACTCCGCTCCCTGGTAGCTGAGCACACCACCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 90 bp CAGGGAGCGGAGTCTCACTGGGTCGTGGGAAGCCTTCTGGCATTCTaGTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCCATCCTAACA +
Preference number: 1 (lower is better)
Translates to: QGAESHWVVGSLLAF*CPRTGLSPTSSILT
Trigger: TGTTAGGATGGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGACCCAGTGAGACTCCGCTCCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 90 bp CAGGCAGGGCAACCCAGGGCAGCCGCTCCTTGGTTCCTACAGACCTaGCCAAAGGGCTTTTGTTCTGGAAACCAAGGAGACTCCTCCCTA +
Preference number: 1 (lower is better)
Translates to: QAGQPRAAAPWFLQT*PKGFCSGNQGDSSL
Trigger: TAGGGAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGGTCTGTAGGAACCAAGGAGCGGCTGCCCTGGGTTGCCCTGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 90 bp CACTCTCACAGCCTCCTCTGCTTCCCTGAGTTGTTCCCCATTTCCTaGGTCCATGATGGACAGAGCAAGGGCTGCCAACCATGGGGGCAC +
Preference number: 1 (lower is better)
Translates to: HSHSLLCFPELFPIS*VHDGQSKGCQPWGH
Trigger: GTGCCCCCATGGTTGGCAGCCCTTGCTCTGTCCATCATGGACTCAGGAAATGGGGAACAACTCAGGGAAGCAGAGGAGGCTGTGAGAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 90 bp GCTCTGGAAACAGTCTCCTTGGGTCTCCAGGTAGAAGTCCTGTGGTaGCCCTTTAGGACCTTCAGGACATGGCACCAGCAGCCAGGCAAA +
Preference number: 1 (lower is better)
Translates to: ALETVSLGLQVEVLW*PFRTFRTWHQQPGK
Trigger: TTTGCCTGGCTGCTGGTGCCATGTCCTGAAGGTCCTAAAGGGTCACCACAGGACTTCTACCTGGAGACCCAAGGAGACTGTTTCCAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 90 bp GAGAACGTGCAGCCTTGGGCTGCCCCTGTCCCAGAGGTAACCATCTaGGTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACAT +
Preference number: 1 (lower is better)
Translates to: ENVQPWAAPVPEVTI*VVPRHEALTTVITH
Trigger: ATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCACCCAGATGGTTACCTCTGGGACAGGGGCAGCCCAAGGCTGCACGTTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 90 bp AACCTTCAGGCCAATGCCCTGGGAGAGGAGTTGTCAGAAGTCACTTaGACTGAGTGTCCACAGGATGTAATCGGCTTCTGCAGCCTGAGC +
Preference number: 1 (lower is better)
Translates to: NLQANALGEELSEVT*TECPQDVIGFCSLS
Trigger: GCTCAGGCTGCAGAAGCCGATTACATCCTGTGGACACTCAGTGCAAGTGACTTCTGACAACTCCTCTCCCAGGGCATTGGCCTGAAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 90 bp AGCCGCTCCTTGGTTCCTACAGACCTGCCCAAAGGGCTTTTGTTCTaGAAACCAAGGAGACTCCTCCCTATCCCAGCTTCTGGCTGTTCT +
Preference number: 1 (lower is better)
Translates to: SRSLVPTDLPKGLLF*KPRRLLPIPASGCS
Trigger: AGAACAGCCAGAAGCTGGGATAGGGAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGGTCTGTAGGAACCAAGGAGCGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 90 bp ACAGGATGTAATCGGCTTCTGCAGCCTGAGCGCCAATGCAGAAGCTaGCTGATGTCCATCTGCTGGACACTGTTGTTTGGCACACAACAG +
Preference number: 1 (lower is better)
Translates to: TGCNRLLQPERQCRS*LMSICWTLLFGTQQ
Trigger: CTGTTGTGTGCCAAACAACAGTGTCCAGCAGATGGACATCAGGCAGCTTCTGCATTGGCGCTCAGGCTGCAGAAGCCGATTACATCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 90 bp GGCTGCCCCTGTCCCAGAGGTAACCATCTGGGTGGTTCCCAGACATaGAGCCCTTACCACAGTCATAACACATTACAATCTGCAGACCAA +
Preference number: 1 (lower is better)
Translates to: GCPCPRGNHLGGSQT*SPYHSHNTLQSADQ
Trigger: TTGGTCTGCAGATTGTAATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCACCCAGATGGTTACCTCTGGGACAGGGGCAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 90 bp TCTCTTAACAAAGCTTCTACTGATCTCCTGGTTCCCCCAAGTCTGTaGCTTGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCTTGT +
Preference number: 1 (lower is better)
Translates to: SLNKASTDLLVPPSL*LGRQLKPGDTELPC
Trigger: ACAAGGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGACTTGGGGGAACCAGGAGATCAGTAGAAGCTTTGTTAAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 90 bp GGAGTTTTCTGCCTGTTTGTCTCTCGGATCCTCAGAATAGCCGTGTaGTGTGAGGTAGGCAGACAGGTTGGTTGCTCCACTCTGGCAAAT +
Preference number: 1 (lower is better)
Translates to: GVFCLFVSRILRIAV*CEVGRQVGCSTLAN
Trigger: ATTTGCCAGAGTGGAGCAACCAACCTGTCTGCCTACCTCACATCACACGGCTATTCTGAGGATCCGAGAGACAAACAGGCAGAAAACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 90 bp CAAGGAGACTCCTCCCTATCCCAGCTTCTGGCTGTTCTTGGAGGTTaGACAAGATGTCAAGACCAAAGTCTAGGTGCTTGGGTAAGCTCT +
Preference number: 1 (lower is better)
Translates to: QGDSSLSQLLAVLGG*TRCQDQSLGAWVSS
Trigger: AGAGCTTACCCAAGCACCTAGACTTTGGTCTTGACATCTTGTTCAACCTCCAAGAACAGCCAGAAGCTGGGATAGGGAGGAGTCTCCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 90 bp AAAGTCACCTGGCGTTTGCACATGGGAACTCCTGTGAGAAGGCACTaGCTGATAAACAAAGATGACAAAGGACACATCTCCAAGTCAGAG +
Preference number: 1 (lower is better)
Translates to: KVTWRLHMGTPVRRH*LINKDDKGHISKSE
Trigger: CTCTGACTTGGAGATGTGTCCTTTGTCATCTTTGTTTATCAGGCAGTGCCTTCTCACAGGAGTTCCCATGTGCAAACGCCAGGTGACTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 90 bp TTCTCCTTCTCCTCTCTCTTTCCTCCTCTTCCCCAAACAGAAAGATaGACACACATACACAAACACATATGCACAGAAGCACATGCACAC +
Preference number: 1 (lower is better)
Translates to: FSFSSLFPPLPQTER*THIHKHICTEAHAH
Trigger: GTGTGCATGTGCTTCTGTGCATATGTGTTTGTGTATGTGTGTGCATCTTTCTGTTTGGGGAAGAGGAGGAAAGAGAGAGGAGAAGGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR GCA 90 bp AGCCGTGCAAGGCCACGGGTGTCGCCGCGCCGTCCAGCCACAGCAGCCAGCGCGGCTAGGCGCACGCGATaGCAGGCGCCGTCGGCCACG +
Preference number: 2 (lower is better)
Translates to: SRARPRVSPRRPATAASAARRTR*QAPSAT
Trigger: CGTGGCCGACGGCGCCTGGCATCGCGTGCGCCTAGC...CGCGCTGGCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCCTTGCACGGCT
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CAA 90 bp GGCGCGGGCAGCACCGAACCCGCCACATCTCCTGCCAGCGAGCCGTaGCGCACCGCCAACCAGATATTGGAGTGGGCACCTGCGGCGGAG +
Preference number: 2 (lower is better)
Translates to: GAGSTEPATSPASEP*RTANQILEWAPAAE
Trigger: CTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGATGTGGCGGGTTCGGTGCTGCCCGCGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CAA 90 bp CGCGTGCGGAAGGCCAGGGTGAGCCCGCTGAGCGATGAGGACACGTaGTGGCCTGTGAACACAGCAGGAGGGCCCTCGCGGAACGTGGCC +
Preference number: 2 (lower is better)
Translates to: RVRKARVSPLSDEDT*WPVNTAGGPSRNVA
Trigger: GGCCACGTTCCGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCTCAGCGGGCTCACCCTGGCCTTCCGCACGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CAA 90 bp GCCACATCTCCTGCCAGCGAGCCGTTGCGCACCGCCAACCAGATATaGGAGTGGGCACCTGCGGCGGAGACGGCGCGCAGTAGCCCAGCC +
Preference number: 2 (lower is better)
Translates to: ATSPASEPLRTANQI*EWAPAAETARSSPA
Trigger: GGCTGGGCTACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGATGTGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR-3UTR CCA 90 bp ACCGCCAACCAGATATTGGAGTGGGCACCTGCGGCGGAGACGGCGCGCAGTAGCGGCCCTCGCGGAACGTaGCCTCGGCCACACCTTCTG +
Preference number: 2 (lower is better)
Translates to: TANQILEWAPAAETARSSGPRGT*PRPHLL
Trigger: CAGAAGGTGTGGCCGAGGCCACGTTCCGCGAGGGCC...GCTACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR-3UTR CCA 90 bp GAAAGCCCAGGTCGCCGCCCAAGCCGTGCAAGGCCACGGGTGTCGCCGCGCCGTGATGAGGACACGTTGTaGCCTGTGAACACAGCAGGA +
Preference number: 2 (lower is better)
Translates to: ESPGRRPSRARPRVSPRRDEDTL*PVNTAG
Trigger: TCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATC...ACGGCGCGGCGACACCCGTGGCCTTGCACGGCTTGGGCGGCGACCTGGGCTTTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR-3UTR GCA 90 bp TCTCAGCCAGTAGCAGAGGCACTGCACCCGGACCCTGCAGAAAGCCCAGGTCGCCTGCCAGCGAGCCGTTaGGCACCGCCAACCAGATAT +
Preference number: 2 (lower is better)
Translates to: SQPVAEALHPDPAESPGRLPASR*APPTRY
Trigger: ATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAG...GCGACCTGGGCTTTCTGCAGGGTCCGGGTGCAGTGCCTCTGCTACTGGCTGAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR-3UTR TCA 90 bp CTGCCTGAGCAGGCACTTGGCCACCTCCACCAGCCATCCTGCAGAAGCAGAGGCGGTGGTTCCCAGACATaGAGCCCTTACCACAGTCAT +
Preference number: 2 (lower is better)
Translates to: LPEQALGHLHQPSCRSRGGGSQT*SPYHSH
Trigger: ATGACTGTGGTAAGGGCTTCATGTCTGGGAACCACC...GCCTCTGCTTCTGCAGGATGGCTGGTGGAGGTGGCCAAGTGCCTGCTCAGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR GCA 90 bp GTCGTGGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCCCCACTATGGGCACCAACATGTaGCCTGTATCCAGCCCAGCA +
Preference number: 2 (lower is better)
Translates to: VVGSLLAFWCPRTGLSPTMGTNM*PVSSPA
Trigger: TGCTGGGCTGGATACAGGGCACATGTTGGTGCCCAT...AGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGTGGATGTCCCAGCTCTaGAAACAGTCTCCTTGGGTC +
Preference number: 2 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGAWMSQL*KQSPWV
Trigger: GACCCAAGGAGACTGTTTCCAGAGCTGGGACATCCA...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR GCA 90 bp TCCCCCAAGTCTGTGCCTTGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCGGCAGACAGGTTGGTTaGTCCACTCTGGCAAATGCC +
Preference number: 2 (lower is better)
Translates to: SPKSVPWEAAETWRHRASGRQVG*STLANA
Trigger: GGCATTTGCCAGAGTGGAGCAACCAACCTGTCTGCC...GGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGACTTGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR GCA 90 bp CTGCCTGAGCAGGCACTTGGCCACCTCCACCAGCCATCCTGCAGAAGCAGAGGCCCTTGGCAACAGAACTaGAGGCAAAGGGGTGAGTTT +
Preference number: 2 (lower is better)
Translates to: LPEQALGHLHQPSCRSRGPWQQN*RQRGEF
Trigger: AAACTCACCCCTTTGCCTGCAGTTCTGTTGCCAAGG...GCCTCTGCTTCTGCAGGATGGCTGGTGGAGGTGGCCAAGTGCCTGCTCAGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp CCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTGGTAGGCAGACAGGTTaGTTGCTCCACTCTGGCAAA +
Preference number: 2 (lower is better)
Translates to: PSPGLCLGGVLSYQGAESGRQTG*LLHSGK
Trigger: TTTGCCAGAGTGGAGCAACCAACCTGTCTGCCTACC...AGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGCAACAGAGCCTTCCTTaGCAACAGAACTGCAGGCAA +
Preference number: 2 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGAQQSLP*QQNCRQ
Trigger: TTGCCTGCAGTTCTGTTGCCAAGGAAGGCTCTGTTG...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp AAGGAACAAGCTCCACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCAAGGGCAGCCGCTCCTTaGTTCCTACAGACCTGCCCA +
Preference number: 2 (lower is better)
Translates to: KEQAPLLPLVSARTPSPPRAAAP*FLQTCP
Trigger: TGGGCAGGTCTGTAGGAACCAAGGAGCGGCTGCCCT...TGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR TCA 90 bp GTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCCATCCTAACAAATTCCGGGTTCCTCCTCTGCTTCCCTaGGTTGTTCCCCATTTCCTG +
Preference number: 2 (lower is better)
Translates to: VSQDRPQPHFLHPNKFRVPPLLP*VVPHFL
Trigger: CAGGAAATGGGGAACAACTCAGGGAAGCAGAGGAGG...AACCCGGAATTTGTTAGGATGGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR TCA 90 bp CTGCCTGAGCAGGCACTTGGCCACCTCCACCAGCCATCCTGCAGAAGCAGAGGCAGAAGTCACTTGCACTaGGTGTCCACAGGATGTAAT +
Preference number: 2 (lower is better)
Translates to: LPEQALGHLHQPSCRSRGRSHLH*VSTGCN
Trigger: ATTACATCCTGTGGACACTCAGTGCAAGTGACTTCT...GCCTCTGCTTCTGCAGGATGGCTGGTGGAGGTGGCCAAGTGCCTGCTCAGGCAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp CAGAGGCCACTGTCCTCCAGCCTATGCATGCTTGAGGCTCTGAGCCACTTACACGAGGCAGCTGAAACCTaGAGACACCGAGCTTCCTTG +
Preference number: 2 (lower is better)
Translates to: QRPLSSSLCMLEALSHLHEAAET*RHRASL
Trigger: CAAGGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTC...GTGTAAGTGGCTCAGAGCCTCAAGCATGCATAGGCTGGAGGACAGTGGCCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp AAGGAACAAGCTCCACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCATGGGGGCACATCCTGTaGATGTCCCAGCTCTGGAAA +
Preference number: 2 (lower is better)
Translates to: KEQAPLLPLVSARTPSPPWGHIL*MSQLWK
Trigger: TTTCCAGAGCTGGGACATCCACAGGATGTGCCCCCA...TGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGAATCATCTTAGGAGCTaGCAACTGAAACAGTTCACC +
Preference number: 2 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGANHLRS*QLKQFT
Trigger: GGTGAACTGTTTCAGTTGCCAGCTCCTAAGATGATT...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CAA 90 bp TCTGTGCCTTGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCTaGTGTAAAAGTCACCTGGCGTTTGCACATGGGAACTCCTGTGAG +
Preference number: 2 (lower is better)
Translates to: SVPWEAAETWRHRAS*CKSHLAFAHGNSCE
Trigger: CTCACAGGAGTTCCCATGTGCAAACGCCAGGTGACTTTTACACAAGGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR TCA 90 bp TATGTGGTCAATAAAACTGGGGAGAGGGCTGTAGTCCTGAGTCCTACAAGGAGCTCGGCTTCTGCAGCCTaGGCGCCAATGCAGAAGCTG +
Preference number: 2 (lower is better)
Translates to: YVVNKTGERAVVLSPTRSSASAA*APMQKL
Trigger: CAGCTTCTGCATTGGCGCTCAGGCTGCAGAAGCCGA...GCTCCTTGTAGGACTCAGGACTACAGCCCTCTCCCCAGTTTTATTGACCACATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp CCGTTCTTCCACCTCTCTGGCCTTCTTGCTAGGGTCCCAAGAAGCCTTTTCAACAGGACCTTCAGGACATaGCACCAGCAGCCAGGCAAA +
Preference number: 2 (lower is better)
Translates to: PFFHLSGLLARVPRSLFNRTFRT*HQQPGK
Trigger: TTTGCCTGGCTGCTGGTGCCATGTCCTGAAGGTCCT...GTTGAAAAGGCTTCTTGGGACCCTAGCAAGAAGGCCAGAGAGGTGGAAGAACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CAA 90 bp CCAAGGAGACTCCTCCCTATCCCAGCTTCTGGCTGTTCTTGGAGGTaGAACAAGATGTCAAGACCAAAGTCTAGGTGCTTGGGTAAGCTC +
Preference number: 2 (lower is better)
Translates to: PRRLLPIPASGCSWR*NKMSRPKSRCLGKL
Trigger: GAGCTTACCCAAGCACCTAGACTTTGGTCTTGACATCTTGTTCAACCTCCAAGAACAGCCAGAAGCTGGGATAGGGAGGAGTCTCCTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp TTCTCGCTTAGCATCCAGGGTCTCTTAACAAAGCTTCTACTGATCTCCTGGTTCAAGGGCTGCCAACCATaGGGGCACATCCTGTGGATG +
Preference number: 2 (lower is better)
Translates to: FSLSIQGLLTKLLLISWFKGCQP*GHILWM
Trigger: CATCCACAGGATGTGCCCCCATGGTTGGCAGCCCTT...GAACCAGGAGATCAGTAGAAGCTTTGTTAAGAGACCCTGGATGCTAAGCGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp AAGGAACAAGCTCCACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCAAAAGGGCTTTTGTTCTaGAAACCAAGGAGACTCCTC +
Preference number: 2 (lower is better)
Translates to: KEQAPLLPLVSARTPSPPKGLLF*KPRRLL
Trigger: GAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTT...TGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR TCA 90 bp AGGTTGAACAAGATGTCAAGACCAAAGTCTAGGTGCTTGGGTAAGCTCTGGCCTCATTTCCTGAGTCCATaGTGGACAGAGCAAGGGCTG +
Preference number: 2 (lower is better)
Translates to: RLNKMSRPKSRCLGKLWPHFLSP*WTEQGL
Trigger: CAGCCCTTGCTCTGTCCATCATGGACTCAGGAAATG...AGGCCAGAGCTTACCCAAGCACCTAGACTTTGGTCTTGACATCTTGTTCAACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR TCA 90 bp GTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCCATCCTAACAAATTCCGGGTTCCTGATAAACAAAGATaGCAAAGGACACATCTCCAA +
Preference number: 2 (lower is better)
Translates to: VSQDRPQPHFLHPNKFRVPDKQR*QRTHLQ
Trigger: TTGGAGATGTGTCCTTTGTCATCTTTGTTTATCAGG...AACCCGGAATTTGTTAGGATGGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR GCA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTGCTCTGGGGGATGGCTaGCTGAGCAGGCACTTGGCC +
Preference number: 2 (lower is better)
Translates to: RKHPSETCRKLCTFDLISALGDG*LSRHLA
Trigger: GGCCAAGTGCCTGCTCAGGCAGCCATCCCCCAGAGC...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp AAGGAACAAGCTCCACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCACTTTTCAACTCTAGGTaGGCAAGACACTTTCCAACA +
Preference number: 2 (lower is better)
Translates to: KEQAPLLPLVSARTPSPPLFNSR*ARHFPT
Trigger: TGTTGGAAAGTGTCTTGCCCACCTAGAGTTGAAAAG...TGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp TTCTCGCTTAGCATCCAGGGTCTCTTAACAAAGCTTCTACTGATCTCCTGGTTCCTGATGTCCATCTGCTaGACACTGTTGTTTGGCACA +
Preference number: 2 (lower is better)
Translates to: FSLSIQGLLTKLLLISWFLMSIC*TLLFGT
Trigger: TGTGCCAAACAACAGTGTCCAGCAGATGGACATCAG...GAACCAGGAGATCAGTAGAAGCTTTGTTAAGAGACCCTGGATGCTAAGCGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR GCA 90 bp TTCTCGCTTAGCATCCAGGGTCTCTTAACAAAGCTTCTACTGATCTCCTGGTTCATGCACAGAAGCACATaGACACACCCTGTCATATCA +
Preference number: 2 (lower is better)
Translates to: FSLSIQGLLTKLLLISWFMHRST*THPVIS
Trigger: TGATATGACAGGGTGTGTGCATGTGCTTCTGTGCAT...GAACCAGGAGATCAGTAGAAGCTTTGTTAAGAGACCCTGGATGCTAAGCGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CCA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTCCCTATCCCAGCTTCTaGCTGTTCTTGGAGGTTGAA +
Preference number: 2 (lower is better)
Translates to: RKHPSETCRKLCTFDLISPYPSF*LFLEVE
Trigger: TTCAACCTCCAAGAACAGCCAGAAGCTGGGATAGGG...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 72 bp GGACCCTGCAGAAAGCCCAGGTCGCCGCCCAAGCCGTaGAAGGCCACGGGTGTCGCCGCGCCGTCCAGCCAC +
Preference number: 3 (lower is better)
Translates to: GPCRKPRSPPKP*KATGVAAPSSH
Trigger: GTGGCTGGACGGCGCGGCGACACCCGTGGCCTTGCACGGCTTGGGCGGCGACCTGGGCTTTCTGCAGGGTCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR-3UTR CAA 90 bp CCGCCCAAGCCGTGCAAGGCCACGGGTGTCGCCGCGCCGTCCAGCCACAGCAGCCCTGCCAGCGAGCCGTaGCGCACCGCCAACCAGATA +
Preference number: 3 (lower is better)
Translates to: PPKPCKATGVAAPSSHSSPASEP*RTANQI
Trigger: TATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGG...GCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCCTTGCACGGCTTGGGCGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR GCA 72 bp CCCGGGCGCGGGCAGCACCGAACCCGCCACATCTCCTaGCAGCGAGCCGTTGCGCACCGCCAACCAGATATT +
Preference number: 3 (lower is better)
Translates to: PGRGQHRTRHIS*QRAVAHRQPDI
Trigger: AATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGATGTGGCGGGTTCGGTGCTGCCCGCGCCCGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CCA 72 bp AGCGAGCCGTTGCGCACCGCCAACCAGATATTGGAGTaGGCACCTGCGGCGGAGACGGCGCGCAGTAGCCCA +
Preference number: 3 (lower is better)
Translates to: SEPLRTANQILE*APAAETARSSP
Trigger: TGGGCTACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CCA 72 bp CTGCCAGCGAGCCGTTGCGCACCGCCAACCAGATATTaGAGTGGGCACCTGCGGCGGAGACGGCGCGCAGTA +
Preference number: 3 (lower is better)
Translates to: LPASRCAPPTRY*SGHLRRRRRAV
Trigger: TACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR TCA 72 bp GCGCGTGCGGAAGGCCAGGGTGAGCCCGCTGAGCGATaGGGACACGTTGTGGCCTGTGAACACAGCAGGAGG +
Preference number: 3 (lower is better)
Translates to: ARAEGQGEPAER*GHVVACEHSRR
Trigger: CCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCTCAGCGGGCTCACCCTGGCCTTCCGCACGCGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR GCA 72 bp TTCTCAGCCAGTAGCAGAGGCACTGCACCCGGACCCTaGAGAAAGCCCAGGTCGCCGCCCAAGCCGTGCAAG +
Preference number: 3 (lower is better)
Translates to: FSASSRGTAPGP*RKPRSPPKPCK
Trigger: CTTGCACGGCTTGGGCGGCGACCTGGGCTTTCTGCAGGGTCCGGGTGCAGTGCCTCTGCTACTGGCTGAGAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR GCA 72 bp GGTAGGCAGACAGGTTGGTTGCTCCACTCTGGCAAATaGCCACAGCAGGCAGGGCAACCCAGGGCAGCCGCT +
Preference number: 3 (lower is better)
Translates to: GRQTGWLLHSGK*PQQAGQPRAAA
Trigger: AGCGGCTGCCCTGGGTTGCCCTGCCTGCTGTGGGCATTTGCCAGAGTGGAGCAACCAACCTGTCTGCCTACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 72 bp GTAGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTaGTCAGCTACCAGGGAGCGGAGTCTCACTGGGTCG +
Preference number: 3 (lower is better)
Translates to: VALLPQGSVLVV*SATRERSLTGS
Trigger: CGACCCAGTGAGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 72 bp GGCCTGTCCAGTGCTAGAGAACGTGCAGCCTTGGGCTaGCCCTGTCCCAGAGGTAACCATCTGGGTGGTTCC +
Preference number: 3 (lower is better)
Translates to: GLSSARERAALG*PCPRGNHLGGS
Trigger: GGAACCACCCAGATGGTTACCTCTGGGACAGGGGCAGCCCAAGGCTGCACGTTCTCTAGCACTGGACAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 72 bp CCTGAGCAGGCACTTGGCCACCTCCACCAGCCATCCTaGAGAAGCAGAGGCCACTGTCCTCCAGCCTATGCA +
Preference number: 3 (lower is better)
Translates to: PEQALGHLHQPS*RSRGHCPPAYA
Trigger: TGCATAGGCTGGAGGACAGTGGCCTCTGCTTCTGCAGGATGGCTGGTGGAGGTGGCCAAGTGCCTGCTCAGG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp GCTCTGGCCTGTCCAGTGCTAGAGAACGTGCAGCCTTaGGCTGCCCCTGTCCCAGAGGTAACCATCTGGGTG +
Preference number: 3 (lower is better)
Translates to: ALACPVLENVQP*AAPVPEVTIWV
Trigger: CACCCAGATGGTTACCTCTGGGACAGGGGCAGCCCAAGGCTGCACGTTCTCTAGCACTGGACAGGCCAGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp GCTGTAGTCCTGAGTCCTACAAGGAGCTCTGGGGGATaGCTGCCTGAGCAGGCACTTGGCCACCTCCACCAG +
Preference number: 3 (lower is better)
Translates to: AVVLSPTRSSGG*LPEQALGHLHQ
Trigger: CTGGTGGAGGTGGCCAAGTGCCTGCTCAGGCAGCCATCCCCCAGAGCTCCTTGTAGGACTCAGGACTACAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp GAGTCTCACTGGGTCGTGGGAAGCCTTCTGGCATTCTaGTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCC +
Preference number: 3 (lower is better)
Translates to: ESHWVVGSLLAF*CPRTGLSPTSS
Trigger: GGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGACCCAGTGAGACTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp TGCTCAGCTACCAGGGAGCGGAGTCTCACTGGGTCGTaGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAG +
Preference number: 3 (lower is better)
Translates to: CSATRERSLTGS*EAFWHSGVPGQ
Trigger: CTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGACCCAGTGAGACTCCGCTCCCTGGTAGCTGAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp CAGAGCAAGGGCTGCCAACCATGGGGGCACATCCTGTaGATGTCCCAGCTCTGGAAACAGTCTCCTTGGGTC +
Preference number: 3 (lower is better)
Translates to: QSKGCQPWGHIL*MSQLWKQSPWV
Trigger: GACCCAAGGAGACTGTTTCCAGAGCTGGGACATCCACAGGATGTGCCCCCATGGTTGGCAGCCCTTGCTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp CAGCCTTGGGCTGCCCCTGTCCCAGAGGTAACCATCTaGGTGGTTCCCAGACATGAAGCCCTTACCACAGTC +
Preference number: 3 (lower is better)
Translates to: QPWAAPVPEVTI*VVPRHEALTTV
Trigger: GACTGTGGTAAGGGCTTCATGTCTGGGAACCACCCAGATGGTTACCTCTGGGACAGGGGCAGCCCAAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 72 bp GAAGCAGAGGCCACTGTCCTCCAGCCTATGCATGCTTaGGGCTCTGAGCCACTTACACCATCCCTCCCCATG +
Preference number: 3 (lower is better)
Translates to: EAEATVLQPMHA*GSEPLTPSLPM
Trigger: CATGGGGAGGGATGGTGTAAGTGGCTCAGAGCCTCAAGCATGCATAGGCTGGAGGACAGTGGCCTCTGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 72 bp GGCTTCTGCAGCCTGAGCGCCAATGCAGAAGCTGCCTaGTGTCCATCTGCTGGACACTGTTGTTTGGCACAC +
Preference number: 3 (lower is better)
Translates to: GFCSLSANAEAA*CPSAGHCCLAH
Trigger: GTGTGCCAAACAACAGTGTCCAGCAGATGGACATCAGGCAGCTTCTGCATTGGCGCTCAGGCTGCAGAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 72 bp CAACCCAGGGCAGCCGCTCCTTGGTTCCTACAGACCTaGCCAAAGGGCTTTTGTTCTGGAAACCAAGGAGAC +
Preference number: 3 (lower is better)
Translates to: QPRAAAPWFLQT*PKGFCSGNQGD
Trigger: GTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGGTCTGTAGGAACCAAGGAGCGGCTGCCCTGGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 72 bp ACAGTCTCCTTGGGTCTCCAGGTAGAAGTCCTGTGGTaGCCCTTTAGGACCTTCAGGACATGGCACCAGCAG +
Preference number: 3 (lower is better)
Translates to: TVSLGLQVEVLW*PFRTFRTWHQQ
Trigger: CTGCTGGTGCCATGTCCTGAAGGTCCTAAAGGGTCACCACAGGACTTCTACCTGGAGACCCAAGGAGACTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 72 bp AGCCTCCTCTGCTTCCCTGAGTTGTTCCCCATTTCCTaGGTCCATGATGGACAGAGCAAGGGCTGCCAACCA +
Preference number: 3 (lower is better)
Translates to: SLLCFPELFPIS*VHDGQSKGCQP
Trigger: TGGTTGGCAGCCCTTGCTCTGTCCATCATGGACTCAGGAAATGGGGAACAACTCAGGGAAGCAGAGGAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp TCCCCCAAGTCTGTGCCTTGGGAGGCAGCTGAAACCTaGAGACACCGAGCTTCCTTGTGTAAAAGTCACCTG +
Preference number: 3 (lower is better)
Translates to: SPKSVPWEAAET*RHRASLCKSHL
Trigger: CAGGTGACTTTTACACAAGGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGACTTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CAA 90 bp AGGTTGAACAAGATGTCAAGACCAAAGTCTAGGTGCTTGGGTAAGCTCTGGCCTAGAGAACGTGCAGCCTaGGGCTGCCCCTGTCCCAGA +
Preference number: 3 (lower is better)
Translates to: RLNKMSRPKSRCLGKLWPRERAA*GCPCPR
Trigger: TCTGGGACAGGGGCAGCCCAAGGCTGCACGTTCTCT...AGGCCAGAGCTTACCCAAGCACCTAGACTTTGGTCTTGACATCTTGTTCAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 72 bp TGCCCTGGGAGAGGAGTTGTCAGAAGTCACTTGCACTaGGTGTCCACAGGATGTAATCGGCTTCTGCAGCCT +
Preference number: 3 (lower is better)
Translates to: CPGRGVVRSHLH*VSTGCNRLLQP
Trigger: AGGCTGCAGAAGCCGATTACATCCTGTGGACACTCAGTGCAAGTGACTTCTGACAACTCCTCTCCCAGGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 72 bp CTTGAGGCTCTGAGCCACTTACACCATCCCTCCCCATaGGGGAATCATAGTGGACACTACATCATGGGCAGG +
Preference number: 3 (lower is better)
Translates to: LEALSHLHHPSP*GNHSGHYIMGR
Trigger: CCTGCCCATGATGTAGTGTCCACTATGATTCCCTCATGGGGAGGGATGGTGTAAGTGGCTCAGAGCCTCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 72 bp CCTGAGCGCCAATGCAGAAGCTGCCTGATGTCCATCTaGTGGACACTGTTGTTTGGCACACAACAGAGCCTT +
Preference number: 3 (lower is better)
Translates to: PERQCRSCLMSI*WTLLFGTQQSL
Trigger: AAGGCTCTGTTGTGTGCCAAACAACAGTGTCCAGCAGATGGACATCAGGCAGCTTCTGCATTGGCGCTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 72 bp GCCAATGCCCTGGGAGAGGAGTTGTCAGAAGTCACTTaGACTGAGTGTCCACAGGATGTAATCGGCTTCTGC +
Preference number: 3 (lower is better)
Translates to: ANALGEELSEVT*TECPQDVIGFC
Trigger: GCAGAAGCCGATTACATCCTGTGGACACTCAGTGCAAGTGACTTCTGACAACTCCTCTCCCAGGGCATTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp ATGCACAGAAGCACATGCACACACCCTGTCATATCATaGGCACCAACATGTGCCCTGTATCCAGCCCAGCAG +
Preference number: 3 (lower is better)
Translates to: MHRSTCTHPVIS*APTCALYPAQQ
Trigger: CTGCTGGGCTGGATACAGGGCACATGTTGGTGCCCATGATATGACAGGGTGTGTGCATGTGCTTCTGTGCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp CTTGCTAGGGTCCCAAGAAGCCTTTTCAACTCTAGGTaGGCAAGACACTTTCCAACACCCAAGGGCAGCCAG +
Preference number: 3 (lower is better)
Translates to: LARVPRSLFNSR*ARHFPTPKGSQ
Trigger: CTGGCTGCCCTTGGGTGTTGGAAAGTGTCTTGCCCACCTAGAGTTGAAAAGGCTTCTTGGGACCCTAGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 72 bp TGCCTGTTTGTCTCTCGGATCCTCAGAATAGCCGTGTaGTGTGAGGTAGGCAGACAGGTTGGTTGCTCCACT +
Preference number: 3 (lower is better)
Translates to: CLFVSRILRIAV*CEVGRQVGCST
Trigger: AGTGGAGCAACCAACCTGTCTGCCTACCTCACATCACACGGCTATTCTGAGGATCCGAGAGACAAACAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 72 bp ATGCACACACCCTGTCATATCATGGGCACCAACATGTaGCCTGTATCCAGCCCAGCAGGTCAGAGAAGTACA +
Preference number: 3 (lower is better)
Translates to: MHTPCHIMGTNM*PVSSPAGQRST
Trigger: TGTACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGTGCCCATGATATGACAGGGTGTGTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CAA 90 bp CACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCAAGTGAGAGTACTTAGCTTCTGGCTGTTCTaGGAGGTTGAACAAGATGTC +
Preference number: 3 (lower is better)
Translates to: HSSPLSQQEHHLPQVRVLSFWLF*EVEQDV
Trigger: GACATCTTGTTCAACCTCCAAGAACAGCCAGAAGCT...AAGTACTCTCACTTGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CAA 90 bp TATGTGGTCAATAAAACTGGGGAGAGGGCTGTAGTCCTGAGTCCTACAAGGAGCGCTGGACACTGTTGTTaGGCACACAACAGAGCCTTC +
Preference number: 3 (lower is better)
Translates to: YVVNKTGERAVVLSPTRSAGHCC*AHNRAF
Trigger: GAAGGCTCTGTTGTGTGCCAAACAACAGTGTCCAGC...GCTCCTTGTAGGACTCAGGACTACAGCCCTCTCCCCAGTTTTATTGACCACATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp CTGGAAACCAAGGAGACTCCTCCCTATCCCAGCTTCTaGCTGTTCTTGGAGGTTGAACAAGATGTCAAGACC +
Preference number: 3 (lower is better)
Translates to: LETKETPPYPSF*LFLEVEQDVKT
Trigger: GGTCTTGACATCTTGTTCAACCTCCAAGAACAGCCAGAAGCTGGGATAGGGAGGAGTCTCCTTGGTTTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp TTGGTTCCTACAGACCTGCCCAAAGGGCTTTTGTTCTaGAAACCAAGGAGACTCCTCCCTATCCCAGCTTCT +
Preference number: 3 (lower is better)
Translates to: LVPTDLPKGLLF*KPRRLLPIPAS
Trigger: AGAAGCTGGGATAGGGAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGGTCTGTAGGAACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CCA 72 bp AAGCTGCCTGATGTCCATCTGCTGGACACTGTTGTTTaGCACACAACAGAGCCTTCCTTGGCAACAGAACTG +
Preference number: 3 (lower is better)
Translates to: KLPDVHLLDTVV*HTTEPSLATEL
Trigger: CAGTTCTGTTGCCAAGGAAGGCTCTGTTGTGTGCCAAACAACAGTGTCCAGCAGATGGACATCAGGCAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CAA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTTGCCTGAGCAGGCACTaGGCCACCTCCACCAGCCAT +
Preference number: 3 (lower is better)
Translates to: RKHPSETCRKLCTFDLISCLSRH*ATSTSH
Trigger: ATGGCTGGTGGAGGTGGCCAAGTGCCTGCTCAGGCA...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 72 bp AACTCCTGTGAGAAGGCACTGCCTGATAAACAAAGATaGCAAAGGACACATCTCCAAGTCAGAGGCCTCTGG +
Preference number: 3 (lower is better)
Translates to: NSCEKALPDKQR*QRTHLQVRGLW
Trigger: CCAGAGGCCTCTGACTTGGAGATGTGTCCTTTGTCATCTTTGTTTATCAGGCAGTGCCTTCTCACAGGAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CAA 90 bp TTCTCGCTTAGCATCCAGGGTCTCTTAACAAAGCTTCTACTGATCTCCTGGTTCGGCTGTTCTTGGAGGTaGAACAAGATGTCAAGACCA +
Preference number: 3 (lower is better)
Translates to: FSLSIQGLLTKLLLISWFGCSWR*NKMSRP
Trigger: TGGTCTTGACATCTTGTTCAACCTCCAAGAACAGCC...GAACCAGGAGATCAGTAGAAGCTTTGTTAAGAGACCCTGGATGCTAAGCGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR TCA 72 bp TGTCCCAGAGGTAACCATCTGGGTGGTTCCCAGACATaGAGCCCTTACCACAGTCATAACACATTACAATCT +
Preference number: 3 (lower is better)
Translates to: CPRGNHLGGSQT*SPYHSHNTLQS
Trigger: AGATTGTAATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCACCCAGATGGTTACCTCTGGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR-3UTR CAA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTACAACAGAGCCTTCCTaGGCAACAGAACTGCAGGCA +
Preference number: 3 (lower is better)
Translates to: RKHPSETCRKLCTFDLISTTEPS*ATELQA
Trigger: TGCCTGCAGTTCTGTTGCCAAGGAAGGCTCTGTTGT...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR GCA 72 bp CAGACTGACCGTTTAAGAAAACATCCATCAGAGACATaGAGGAAATTGTGCACATTTGACCTGATTTCTCAT +
Preference number: 3 (lower is better)
Translates to: QTDRLRKHPSET*RKLCTFDLISH
Trigger: ATGAGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCTTAAACGGTCAGTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp AGCCGTGCAAGGCCACGGGTGTCGCCGCGCCGTCCAGCCACAGCAGCCAGCGCGCGCTGGCCCAGGTCCTaGAGCTGGTCAGGCCCAAAG +
Preference number: 4 (lower is better)
Translates to: SRARPRVSPRRPATAASARWPRS*SWSGPK
Trigger: CTTTGGGCCTGACCAGCTGCAGGACCTGGGCCAGCG...CGCGCTGGCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCCTTGCACGGCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR CCA 90 bp GCGGCGGAGACGGCGCGCAGTAGCCCAGCCTCGGAGTCGCGCGTGCGGAAGGCCCCCAGGTCCTGCAGCTaGTCAGGCCCAAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: AAETARSSPASESRVRKAPRSCS*SGPKLS
Trigger: GCTCAGCTTTGGGCCTGACCAGCTGCAGGACCTGGG...GGCCTTCCGCACGCGCGACTCCGAGGCTGGGCTACTGCGCGCCGTCTCCGCCGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR CCA 90 bp GCCGTCCAGCCACAGCAGCCAGCGCGAGGCAGCGGCCTGTGGGAACTCCCGGGCCCCTCAGCCCGGATCTaGCCCTCACTCAGGAACACA +
Preference number: 4 (lower is better)
Translates to: AVQPQQPARGSGLWELPGPSARI*PSLRNT
Trigger: TGTGTTCCTGAGTGAGGGCCAGATCCGGGCTGAGGG...GCCCGGGAGTTCCCACAGGCCGCTGCCTCGCGCTGGCTGCTGTGGCTGGACGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR CCA 90 bp CACAGCAGGAGGGCCCTCGCGGAACGTGGCCTCGGCCACACCTTCTGTAAGGCTGGGCACCATCGCTGCTaGGCACAGGTGGGCCCCGTG +
Preference number: 4 (lower is better)
Translates to: HSRRALAERGLGHTFCKAGHHRC*AQVGPV
Trigger: CACGGGGCCCACCTGTGCCCAGCAGCGATGGTGCCC...AGCCTTACAGAAGGTGTGGCCGAGGCCACGTTCCGCGAGGGCCCTCCTGCTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR CCA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGCCGTGCGCGCACGGCTaGCTCTGGCACTCGTCCACG +
Preference number: 4 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGAPCAHG*LWHSST
Trigger: CGTGGACGAGTGCCAGAGCCAGCCGTGCGCGCACGG...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GCCGTCCAGCCACAGCAGCCAGCGCGAGGCAGCGGCCTGTGGGAACTCCCGGGCCTGAGCATCACCAAGTaGGGGAGTCCATCATCCCAG +
Preference number: 4 (lower is better)
Translates to: AVQPQQPARGSGLWELPGLSITK*GSPSSQ
Trigger: CTGGGATGATGGACTCCCCCACTTGGTGATGCTCAG...GCCCGGGAGTTCCCACAGGCCGCTGCCTCGCGCTGGCTGCTGTGGCTGGACGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR TCA 90 bp TGCAAGGCCACGGGTGTCGCCGCGCCGTCCAGCCACAGCAGCCAGCGCGAGGCAGGCACGTGCCACCATTaGAACAGGGATTGGGATTGC +
Preference number: 4 (lower is better)
Translates to: CKATGVAAPSSHSSQREAGTCHH*NRDWDC
Trigger: GCAATCCCAATCCCTGTTTCAATGGTGGCACGTGCC...TGCCTCGCGCTGGCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCCTTGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR TCA 90 bp TGTCGCCGCGCCGTCCAGCCACAGCAGCCAGCGCGAGGCAGCGGCCTGTGGGAAAGAAGTCATTCCAGGTaGCGTGGCACGTGCCACCAT +
Preference number: 4 (lower is better)
Translates to: CRRAVQPQQPARGSGLWERSHSR*RGTCHH
Trigger: ATGGTGGCACGTGCCACGTCACCTGGAATGACTTCT...TTCCCACAGGCCGCTGCCTCGCGCTGGCTGCTGTGGCTGGACGGCGCGGCGACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR GCA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGATTGGAGTGGGCACCTaGGGCGGAGACGGCGCGCAG +
Preference number: 4 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGAIGVGT*GGDGAQ
Trigger: CTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAAT...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TCGCCGCGCCGTCCAGCCACAGCAGCCAGCGCGAGGCAGCGGCCTGTGGGAACTTCAGAGACACAACCCTaGGTGAGGTTGGAGGACTGG +
Preference number: 4 (lower is better)
Translates to: SPRRPATAASARQRPVGTSETQP*VRLEDW
Trigger: CCAGTCCTCCAACCTCACCCAGGGTTGTGTCTCTGA...AGTTCCCACAGGCCGCTGCCTCGCGCTGGCTGCTGTGGCTGGACGGCGCGGCGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CAA 72 bp AAGGCCAGGGTGAGCCCGCTGAGCGATGAGGACACGTaGTGGCCTGTGAACACAGCAGGAGGGCCCTCGCGG +
Preference number: 4 (lower is better)
Translates to: KARVSPLSDEDT*WPVNTAGGPSR
Trigger: CCGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCTCAGCGGGCTCACCCTGGCCTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR TCA 90 bp CCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTCGCACCGCTCTCCACTaGAGCCTGGCCAGCAGAGGC +
Preference number: 4 (lower is better)
Translates to: PSPGLCLGGVLSYQGAESRTALH*SLASRG
Trigger: GCCTCTGCTGGCCAGGCTTCAGTGGAGAGCGGTGCG...AGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp TGGGTAAGCTCTGGCCTGTCCAGTGCTAGAGAACGTGCAGCCTTGGGCTGCCCCCACTCCAGCACCTCCTaGTCGCAGCGCGCGCCTTCG +
Preference number: 4 (lower is better)
Translates to: WVSSGLSSARERAALGCPHSSTS*SQRAPS
Trigger: CGAAGGCGCGCGCTGCGAGCAGGAGGTGCTGGAGTG...GGGGCAGCCCAAGGCTGCACGTTCTCTAGCACTGGACAGGCCAGAGCTTACCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGGCAGGTGGCAGCCAGTaGGCAGGTATGGCCCTGGCA +
Preference number: 4 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGAAGGSQ*AGMALA
Trigger: TGCCAGGGCCATACCTGCCCACTGGCTGCCACCTGC...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CCGCCCAAGCCGTGCAAGGCCACGGGTGTCGCCGCGCCGTCCAGCCACAGCAGCGAGAAGAAGGGGAGGTaGATGCTGTTGAGTTGTAGG +
Preference number: 4 (lower is better)
Translates to: PPKPCKATGVAAPSSHSSEKKGR*MLLSCR
Trigger: CCTACAACTCAACAGCATCCACCTCCCCTTCTTCTC...GCTGCTGTGGCTGGACGGCGCGGCGACACCCGTGGCCTTGCACGGCTTGGGCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR CCA 90 bp GTCGTGGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCCCCACTGGCAGGAGGCAGGCATaGCTGCCTGGGGCACCATCG +
Preference number: 4 (lower is better)
Translates to: VVGSLLAFWCPRTGLSPTGRRQA*LPGAPS
Trigger: CGATGGTGCCCCAGGCAGCCATGCCTGCCTCCTGCC...AGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GATGAGGACACGTTGTGGCCTGTGAACACAGCAGGAGGGCCCTCGCGGAACGTGGGCAGGAGGCAGGCATaGCTGCCTGGGGCACCATCG +
Preference number: 4 (lower is better)
Translates to: DEDTLWPVNTAGGPSRNVGRRQA*LPGAPS
Trigger: CGATGGTGCCCCAGGCAGCCATGCCTGCCTCCTGCC...CACGTTCCGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR GCA 90 bp TCCCCCAAGTCTGTGCCTTGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCTGGCAGGTGCCCCCATaGTGGCAAGGCCGGGACGCA +
Preference number: 4 (lower is better)
Translates to: SPKSVPWEAAETWRHRASWQVPP*WQGRDA
Trigger: TGCGTCCCGGCCTTGCCAGCATGGGGGCACCTGCCA...GGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGACTTGGGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GATGAGGACACGTTGTGGCCTGTGAACACAGCAGGAGGGCCCTCGCGGAACGTGCCCACATACAGCCGCTaGCCCAGGTCCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: DEDTLWPVNTAGGPSRNVPTYSR*PRSCSW
Trigger: CCAGCTGCAGGACCTGGGCCAGCGGCTGTATGTGGG...CACGTTCCGCGAGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR CCA 90 bp ACCCTGCAGAAAGCCCAGGTCGCCGCCCAAGCCGTGCAAGGCCACGGGTGTCGCGTGAGGTTGGAGGACTaGCCAGCTTCCAGTTCACTG +
Preference number: 4 (lower is better)
Translates to: TLQKAQVAAQAVQGHGCRVRLED*PASSSL
Trigger: CAGTGAACTGGAAGCTGGCCAGTCCTCCAACCTCAC...GCGACACCCGTGGCCTTGCACGGCTTGGGCGGCGACCTGGGCTTTCTGCAGGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR CCA 90 bp TCGCCGCGCCGTCCAGCCACAGCAGCCAGCGCGAGGCAGCGGCCTGTGGGAACTTCATTCCAGGTGACGTaGCACGTGCCACCATTGAAA +
Preference number: 4 (lower is better)
Translates to: SPRRPATAASARQRPVGTSFQVT*HVPPLK
Trigger: TTTCAATGGTGGCACGTGCCACGTCACCTGGAATGA...AGTTCCCACAGGCCGCTGCCTCGCGCTGGCTGCTGTGGCTGGACGGCGCGGCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
3UTR CAA 72 bp GCCAGAGAGGTAGCCCTCCTTCCCCAGGGCTCTGTCTaGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTC +
Preference number: 4 (lower is better)
Translates to: AREVALLPQGSV*VVCSATRERSL
Trigger: GAGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCTACCTCTCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CAA 72 bp AGCACCGAACCCGCCACATCTCCTGCCAGCGAGCCGTaGCGCACCGCCAACCAGATATTGGAGTGGGCACCT +
Preference number: 4 (lower is better)
Translates to: STEPATSPASEP*RTANQILEWAP
Trigger: AGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGATGTGGCGGGTTCGGTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR TCA 90 bp CCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTCAGTCGCAGCGGAAGTaGGTCCACAGGTCCACGCAG +
Preference number: 4 (lower is better)
Translates to: PSPGLCLGGVLSYQGAESQSQRK*VHRSTQ
Trigger: CTGCGTGGACCTGTGGACTCACTTCCGCTGCGACTG...AGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp TCCTGCCAGCGAGCCGTTGCGCACCGCCAACCAGATATTGGAGTGGGCACCTGCAGACACAACCCTGGGTaGGGTTGGAGGACTGGCCAG +
Preference number: 4 (lower is better)
Translates to: SCQRAVAHRQPDIGVGTCRHNPG*GWRTGQ
Trigger: CTGGCCAGTCCTCCAACCTCACCCAGGGTTGTGTCT...GCAGGTGCCCACTCCAATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR TCA 90 bp GTCGTGGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCCCCACTGGCCCAGGCAGCCCGTaGAGTTCTCAGCCAGTAGCA +
Preference number: 4 (lower is better)
Translates to: VVGSLLAFWCPRTGLSPTGPGSP*SSQPVA
Trigger: TGCTACTGGCTGAGAACTTCACGGGCTGCCTGGGCC...AGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTCGTGGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCCCCACTCGGCAGGTTCGCGGGTaGGGAGGAAAAATGACACGG +
Preference number: 4 (lower is better)
Translates to: VVGSLLAFWCPRTGLSPTRQVRG*GGKMTR
Trigger: CCGTGTCATTTTTCCTCCGCACCCGCGAACCTGCCG...AGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TGGGTAAGCTCTGGCCTGTCCAGTGCTAGAGAACGTGCAGCCTTGGGCTGCCCCAGGCTCCCGGGAAGATaGCCTGAACACCCCCGTACA +
Preference number: 4 (lower is better)
Translates to: WVSSGLSSARERAALGCPRLPGR*PEHPRT
Trigger: TGTACGGGGGTGTTCAGGCCATCTTCCCGGGAGCCT...GGGGCAGCCCAAGGCTGCACGTTCTCTAGCACTGGACAGGCCAGAGCTTACCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CAGCACCGAACCCGCCACATCTCCTGCCAGCGAGCCGTTGCGCACCGCCAACCAGAATCATTGGCAAACTaGAGCAACAGGCCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: QHRTRHISCQRAVAHRQPESLAN*SNRPAG
Trigger: ACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTC...TGGTTGGCGGTGCGCAACGGCTCGCTGGCAGGAGATGTGGCGGGTTCGGTGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR CCA 90 bp AAGGAACAAGCTCCACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCAGGGCACCATCGCTGCTaGGCACAGGTGGGCCCCGTG +
Preference number: 4 (lower is better)
Translates to: KEQAPLLPLVSARTPSPPGHHRC*AQVGPV
Trigger: CACGGGGCCCACCTGTGCCCAGCAGCGATGGTGCCC...TGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp AGCAGGAGGGCCCTCGCGGAACGTGGCCTCGGCCACACCTTCTGTAAGGCTGGCAGTCAGGCTCGCAACTaGATCATTGGCAAACTGGAG +
Preference number: 4 (lower is better)
Translates to: SRRALAERGLGHTFCKAGSQARN*IIGKLE
Trigger: CTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACT...GCCAGCCTTACAGAAGGTGTGGCCGAGGCCACGTTCCGCGAGGGCCCTCCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR GCA 90 bp CCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTACAGGCTGCAGGCACTaGTACCTCCAGCAGTGGGAA +
Preference number: 4 (lower is better)
Translates to: PSPGLCLGGVLSYQGAESTGCRH*YLQQWE
Trigger: TTCCCACTGCTGGAGGTAGCAGTGCCTGCAGCCTGT...AGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TCCCCCAAGTCTGTGCCTTGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCTCCAGGGTTCCCAGGTaGAGCGTCACTTCCACCTGG +
Preference number: 4 (lower is better)
Translates to: SPKSVPWEAAETWRHRASSRVPR*SVTSTW
Trigger: CCAGGTGGAAGTGACGCTCCACCTGGGAACCCTGGA...GGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGACTTGGGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp CATATCATGGGCACCAACATGTGCCCTGTATCCAGCCCAGCAGGTCAGAGAAGTCCGTTGACCAGGTCGTaGCACACGCCACCGTGCGCG +
Preference number: 4 (lower is better)
Translates to: HIMGTNMCPVSSPAGQRSPLTRS*HTPPCA
Trigger: CGCGCACGGTGGCGTGTGTCACGACCTGGTCAACGG...ACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGTGCCCATGATATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGCAGGAACCTCATCAGTaGATGTGGCTCCACGGTAAG +
Preference number: 4 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGAQEPHQ*MWLHGK
Trigger: CTTACCGTGGAGCCACATGCACTGATGAGGTTCCTG...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp ACCGCCAACCAGATATTGGAGTGGGCACCTGCGGCGGAGACGGCGCGCAGTAGCAGTTCTCGGAGCAGGTaGAGTAGAAGTCATTCCAGG +
Preference number: 4 (lower is better)
Translates to: TANQILEWAPAAETARSSSSRSR*SRSHSR
Trigger: CCTGGAATGACTTCTACTGCACCTGCTCCGAGAACT...GCTACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR GCA 90 bp GTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCCATCCTAACAAATTCCGGGTTTGGCCACCCGGCAAGTaGCCCCATTCAAGCAAGGGC +
Preference number: 4 (lower is better)
Translates to: VSQDRPQPHFLHPNKFRVWPPGK*PHSSKG
Trigger: GCCCTTGCTTGAATGGGGGCACTTGCCGGGTGGCCA...AACCCGGAATTTGTTAGGATGGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTCCACTTTCTGTAGCCTaGCACTTGGTCCCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: PSPGLCLGGVLSYQGAESPLSVA*HLVPGA
Trigger: TGCTCCAGGGACCAAGTGCCAGGCTACAGAAAGTGG...AGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTATGTCCAGTTCACAGTaGGGTCCCTGGAATCCAGGC +
Preference number: 4 (lower is better)
Translates to: PSPGLCLGGVLSYQGAESMSSSQ*GPWNPG
Trigger: GCCTGGATTCCAGGGACCCCACTGTGAACTGGACAT...AGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCCATCCTAACAAATTCCGGGTTAGGAAGCCAGCGGCGTaGCTGAAGCTGAAGGCTCCC +
Preference number: 4 (lower is better)
Translates to: VSQDRPQPHFLHPNKFRVRKPAA*LKLKAP
Trigger: GGGAGCCTTCAGCTTCAGCCACGCCGCTGGCTTCCT...AACCCGGAATTTGTTAGGATGGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTAGCACTGGAAACCATTaGGCAGGTCCTGGCAGCTAC +
Preference number: 4 (lower is better)
Translates to: PSPGLCLGGVLSYQGAESSTGNH*AGPGSY
Trigger: GTAGCTGCCAGGACCTGCCCAATGGTTTCCAGTGCT...AGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CTGCCTGAGCAGGCACTTGGCCACCTCCACCAGCCATCCTGCAGAAGCAGAGGCCACCCAAGCCAAAAGTaGCAGCAGGAACCTCATCAG +
Preference number: 4 (lower is better)
Translates to: LPEQALGHLHQPSCRSRGHPSQK*QQEPHQ
Trigger: CTGATGAGGTTCCTGCTGCCACTTTTGGCTTGGGTG...GCCTCTGCTTCTGCAGGATGGCTGGTGGAGGTGGCCAAGTGCCTGCTCAGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp AAGGAACAAGCTCCACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCACCCACATACAGCCGCTaGCCCAGGTCCTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: KEQAPLLPLVSARTPSPPPTYSR*PRSCSW
Trigger: CCAGCTGCAGGACCTGGGCCAGCGGCTGTATGTGGG...TGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp CCTGCCCAAAGGGCTTTTGTTCTGGAAACCAAGGAGACTCCTCCCTATCCCAGCCCGTGGTGGCATGGCTaGGTAGCACAGCCTCCAAGC +
Preference number: 4 (lower is better)
Translates to: PAQRAFVLETKETPPYPSPWWHG*VAQPPS
Trigger: GCTTGGAGGCTGTGCTACTCAGCCATGCCACCACGG...GCTGGGATAGGGAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp CAGAGGCCACTGTCCTCCAGCCTATGCATGCTTGAGGCTCTGAGCCACTTACACAGACACAACCCTGGGTaGGGTTGGAGGACTGGCCAG +
Preference number: 4 (lower is better)
Translates to: QRPLSSSLCMLEALSHLHRHNPG*GWRTGQ
Trigger: CTGGCCAGTCCTCCAACCTCACCCAGGGTTGTGTCT...GTGTAAGTGGCTCAGAGCCTCAAGCATGCATAGGCTGGAGGACAGTGGCCTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp TCCCCCAAGTCTGTGCCTTGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCCGAGACTCTGACATCTaGGGCCAGCAAGACCTTCCT +
Preference number: 4 (lower is better)
Translates to: SPKSVPWEAAETWRHRASRDSDI*GQQDLP
Trigger: AGGAAGGTCTTGCTGGCCTCAGATGTCAGAGTCTCG...GGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGACTTGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp GTCGTGGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCCCCACTGGTTTGTCGAGACTCTaGCATCTGAGGCCAGCAAGA +
Preference number: 4 (lower is better)
Translates to: VVGSLLAFWCPRTGLSPTGLSRL*HLRPAR
Trigger: TCTTGCTGGCCTCAGATGTCAGAGTCTCGACAAACC...AGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp CCGTTCTTCCACCTCTCTGGCCTTCTTGCTAGGGTCCCAAGAAGCCTTTTCAACCGCTGGCCCAGGTCCTaGAGCTGGTCAGGCCCAAAG +
Preference number: 4 (lower is better)
Translates to: PFFHLSGLLARVPRSLFNRWPRS*SWSGPK
Trigger: CTTTGGGCCTGACCAGCTGCAGGACCTGGGCCAGCG...GTTGAAAAGGCTTCTTGGGACCCTAGCAAGAAGGCCAGAGAGGTGGAAGAACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp TCTCAGCCAGTAGCAGAGGCACTGCACCCGGACCCTGCAGAAAGCCCAGGTCGCAACAGGGATTGGGATTaGACGTGTCCTCAGAGACAC +
Preference number: 4 (lower is better)
Translates to: SQPVAEALHPDPAESPGRNRDWD*TCPQRH
Trigger: GTGTCTCTGAGGACACGTGCAATCCCAATCCCTGTT...GCGACCTGGGCTTTCTGCAGGGTCCGGGTGCAGTGCCTCTGCTACTGGCTGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR GCA 90 bp CAGGTCAGAGAAGTACACACTCTCACAGCCTCCTCTGCTTCCCTGAGTTGTTCCACTGCACCCGGACCCTaGAGAAAGCCCAGGTCGCCG +
Preference number: 4 (lower is better)
Translates to: QVREVHTLTASSASLSCSTAPGP*RKPRSP
Trigger: CGGCGACCTGGGCTTTCTGCAGGGTCCGGGTGCAGT...GGAACAACTCAGGGAAGCAGAGGAGGCTGTGAGAGTGTGTACTTCTCTGACCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCCATCCTAACAAATTCCGGGTTGACACTTGGAGTCTCTaGAGGAACCAGCCCAGCCGG +
Preference number: 4 (lower is better)
Translates to: VSQDRPQPHFLHPNKFRVDTWSL*RNQPSR
Trigger: CCGGCTGGGCTGGTTCCTCCAGAGACTCCAAGTGTC...AACCCGGAATTTGTTAGGATGGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp ACCAACATGTGCCCTGTATCCAGCCCAGCAGGTCAGAGAAGTACACACTCTCACGCCAGTGGGCAGGTATaGCCCTGGCAGCCTGTGAGC +
Preference number: 4 (lower is better)
Translates to: TNMCPVSSPAGQRSTHSHASGQV*PWQPVS
Trigger: GCTCACAGGCTGCCAGGGCCATACCTGCCCACTGGC...GTGAGAGTGTGTACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CTGCCTGAGCAGGCACTTGGCCACCTCCACCAGCCATCCTGCAGAAGCAGAGGCAGGTTTGGGCCTAGTTaGTGGAGCAGAAAAGAGGCT +
Preference number: 4 (lower is better)
Translates to: LPEQALGHLHQPSCRSRGRFGPS*WSRKEA
Trigger: AGCCTCTTTTCTGCTCCACCAACTAGGCCCAAACCT...GCCTCTGCTTCTGCAGGATGGCTGGTGGAGGTGGCCAAGTGCCTGCTCAGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGGAGTCTGAATCATTGGCAAACTaGAGCAACAGGCCGGCAGGT +
Preference number: 4 (lower is better)
Translates to: PSPGLCLGGVLSYQGAESESLAN*SNRPAG
Trigger: ACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTC...AGACTCCGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp ACCGCCAACCAGATATTGGAGTGGGCACCTGCGGCGGAGACGGCGCGCAGTAGCTCGCAACTGAATCATTaGCAAACTGGAGCAACAGGC +
Preference number: 4 (lower is better)
Translates to: TANQILEWAPAAETARSSSQLNH*QTGATG
Trigger: GCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGA...GCTACTGCGCGCCGTCTCCGCCGCAGGTGCCCACTCCAATATCTGGTTGGCGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS-3UTR CCA 90 bp CCGTTCTTCCACCTCTCTGGCCTTCTTGCTAGGGTCCCAAGAAGCCTTTTCAACGGCCCTCGCGGAACGTaGCCTCGGCCACACACACAA +
Preference number: 4 (lower is better)
Translates to: PFFHLSGLLARVPRSLFNGPRGT*PRPHTQ
Trigger: TTGTGTGTGTGGCCGAGGCCACGTTCCGCGAGGGCC...GTTGAAAAGGCTTCTTGGGACCCTAGCAAGAAGGCCAGAGAGGTGGAAGAACGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GTCGTGGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCCCCACTAAGTCTCTCCTCTGGTaGCACCTTGAGGACACTGTC +
Preference number: 4 (lower is better)
Translates to: VVGSLLAFWCPRTGLSPTKSLLW*HLEDTV
Trigger: GACAGTGTCCTCAAGGTGCCACCAGAGGAGAGACTT...AGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp CACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCAAGTGAGAGTACTTCCCGGGAAGATGGCCTaGACACCCCCGTACAAGGTC +
Preference number: 4 (lower is better)
Translates to: HSSPLSQQEHHLPQVRVLPGKMA*TPPYKV
Trigger: GACCTTGTACGGGGGTGTTCAGGCCATCTTCCCGGG...AAGTACTCTCACTTGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp AAGGAACAAGCTCCACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCAGGCCCTGGCAGCCTGTaGGCTGCACAGAACAGTCAT +
Preference number: 4 (lower is better)
Translates to: KEQAPLLPLVSARTPSPPGPGSL*AAQNSH
Trigger: ATGACTGTTCTGTGCAGCTCACAGGCTGCCAGGGCC...TGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp AAGGAACAAGCTCCACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCAGTCGGGTCAGAGCGCTaGAAGCACTGGCCCCCATTT +
Preference number: 4 (lower is better)
Translates to: KEQAPLLPLVSARTPSPPVGSER*KHWPPF
Trigger: AAATGGGGGCCAGTGCTTGCAGCGCTCTGACCCGAC...TGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTCGTGGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCCCCACTTCCACCTGGTGCCAATaGCCATCATTTAAGGCTAGG +
Preference number: 4 (lower is better)
Translates to: VVGSLLAFWCPRTGLSPTSTWCQ*PSFKAR
Trigger: CCTAGCCTTAAATGATGGGCATTGGCACCAGGTGGA...AGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCCATCCTAACAAATTCCGGGTTGCTGGCAAGGTTCCCTaGGCTCACAACCCAGAAGCA +
Preference number: 4 (lower is better)
Translates to: VSQDRPQPHFLHPNKFRVAGKVP*AHNPEA
Trigger: TGCTTCTGGGTTGTGAGCGCAGGGAACCTTGCCAGC...AACCCGGAATTTGTTAGGATGGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTCGTGGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCCCCACTAGTTCTCGGAGCAGGTaGAGTAGAAGTCATTCCAGG +
Preference number: 4 (lower is better)
Translates to: VVGSLLAFWCPRTGLSPTSSRSR*SRSHSR
Trigger: CCTGGAATGACTTCTACTGCACCTGCTCCGAGAACT...AGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATTACAATCTGCAGGCTAGGCGCACGCGATaGCAGGCGCCGTCGGCCACG +
Preference number: 4 (lower is better)
Translates to: VVPRHEALTTVITHYNLQARRTR*QAPSAT
Trigger: CGTGGCCGACGGCGCCTGGCATCGCGTGCGCCTAGC...CTGCAGATTGTAATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CAGGTCAGAGAAGTACACACTCTCACAGCCTCCTCTGCTTCCCTGAGTTGTTCCTTAGGATCTGGGCCCTaGGGCACACACAGTGCCCCG +
Preference number: 4 (lower is better)
Translates to: QVREVHTLTASSASLSCSLGSGP*GTHSAP
Trigger: CGGGGCACTGTGTGTGCCCCAGGGCCCAGATCCTAA...GGAACAACTCAGGGAAGCAGAGGAGGCTGTGAGAGTGTGTACTTCTCTGACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CATATCATGGGCACCAACATGTGCCCTGTATCCAGCCCAGCAGGTCAGAGAAGTCCCAGGTCCTGCAGCTaGTCAGGCCCAAAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: HIMGTNMCPVSSPAGQRSPRSCS*SGPKLS
Trigger: GCTCAGCTTTGGGCCTGACCAGCTGCAGGACCTGGG...ACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGTGCCCATGATATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TCCCCCAAGTCTGTGCCTTGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCGATGAGGACACGTTGTaGCCTGTGAACACAGCAGGA +
Preference number: 4 (lower is better)
Translates to: SPKSVPWEAAETWRHRASDEDTL*PVNTAG
Trigger: TCCTGCTGTGTTCACAGGCCACAACGTGTCCTCATC...GGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGACTTGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGAATAAGTCTCTCCTCTaGTGGCACCTTGAGGACACT +
Preference number: 4 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGANKSLL*WHLEDT
Trigger: AGTGTCCTCAAGGTGCCACCAGAGGAGAGACTTATT...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp ATGGGGGCACATCCTGTGGATGTCCCAGCTCTGGAAACAGTCTCCTTGGGTCTCTGGAGCACATGGGTCTaGGGCACAGACACTTGGAGT +
Preference number: 4 (lower is better)
Translates to: MGAHPVDVPALETVSLGLWSTWV*GTDTWS
Trigger: ACTCCAAGTGTCTGTGCCTCAGACCCATGTGCTCCA...GAGACCCAAGGAGACTGTTTCCAGAGCTGGGACATCCACAGGATGTGCCCCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp CAGAGGCCACTGTCCTCCAGCCTATGCATGCTTGAGGCTCTGAGCCACTTACACGAAGCACAGTTCCCTTaGGCTCCTCAGGCAGCAGAA +
Preference number: 4 (lower is better)
Translates to: QRPLSSSLCMLEALSHLHEAQFP*APQAAE
Trigger: TTCTGCTGCCTGAGGAGCTCAAGGGAACTGTGCTTC...GTGTAAGTGGCTCAGAGCCTCAAGCATGCATAGGCTGGAGGACAGTGGCCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp CAGAGGCCACTGTCCTCCAGCCTATGCATGCTTGAGGCTCTGAGCCACTTACACAGAAGTCATTCCAGGTaGCGTGGCACGTGCCACCAT +
Preference number: 4 (lower is better)
Translates to: QRPLSSSLCMLEALSHLHRSHSR*RGTCHH
Trigger: ATGGTGGCACGTGCCACGTCACCTGGAATGACTTCT...GTGTAAGTGGCTCAGAGCCTCAAGCATGCATAGGCTGGAGGACAGTGGCCTCTG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp ACCAACATGTGCCCTGTATCCAGCCCAGCAGGTCAGAGAAGTACACACTCTCACAGCCCAGAGGACAGCTaGAAAGGAAGCCAGCGGCGT +
Preference number: 4 (lower is better)
Translates to: TNMCPVSSPAGQRSTHSHSPEDS*KGSQRR
Trigger: ACGCCGCTGGCTTCCTTTGCAGCTGTCCTCTGGGCT...GTGAGAGTGTGTACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp CCTGCCCAAAGGGCTTTTGTTCTGGAAACCAAGGAGACTCCTCCCTATCCCAGCCTGCAGGTTCCACCATaGAGGCATGGTTCCGACTGG +
Preference number: 4 (lower is better)
Translates to: PAQRAFVLETKETPPYPSLQVPP*RHGSDW
Trigger: CCAGTCGGAACCATGCCTGCATGGTGGAACCTGCAG...GCTGGGATAGGGAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGCTGGCCAGAGAATCCTaGACTGCAAGTACATTCAAA +
Preference number: 4 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGALARES*TASTFK
Trigger: TTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAG...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp AAGGAACAAGCTCCACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCACCATTGGGCAGGTCCTaGCAGCTACCTCCATTGAGG +
Preference number: 4 (lower is better)
Translates to: KEQAPLLPLVSARTPSPPPLGRS*QLPPLR
Trigger: CCTCAATGGAGGTAGCTGCCAGGACCTGCCCAATGG...TGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GTCGTGGGAAGCCTTCTGGCATTCTGGTGTCCCAGGACAGGCCTCAGCCCCACTTCGCAACTGAATCATTaGCAAACTGGAGCAACAGGC +
Preference number: 4 (lower is better)
Translates to: VVGSLLAFWCPRTGLSPTSQLNH*QTGATG
Trigger: GCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGA...AGTGGGGCTGAGGCCTGTCCTGGGACACCAGAATGCCAGAAGGCTTCCCACGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CCGTTCTTCCACCTCTCTGGCCTTCTTGCTAGGGTCCCAAGAAGCCTTTTCAACCCCTCAGCCCGGATCTaGCCCTCACTCAGGAACACA +
Preference number: 4 (lower is better)
Translates to: PFFHLSGLLARVPRSLFNPSARI*PSLRNT
Trigger: TGTGTTCCTGAGTGAGGGCCAGATCCGGGCTGAGGG...GTTGAAAAGGCTTCTTGGGACCCTAGCAAGAAGGCCAGAGAGGTGGAAGAACGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCCATCCTAACAAATTCCGGGTTCTGAGCATCACCAAGTaGGGGAGTCCATCATCCCAG +
Preference number: 4 (lower is better)
Translates to: VSQDRPQPHFLHPNKFRVLSITK*GSPSSQ
Trigger: CTGGGATGATGGACTCCCCCACTTGGTGATGCTCAG...AACCCGGAATTTGTTAGGATGGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TCCCCCAAGTCTGTGCCTTGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCGAGAAGAAGGGGAGGTaGATGCTGTTGAGTTGTAGG +
Preference number: 4 (lower is better)
Translates to: SPKSVPWEAAETWRHRASEKKGR*MLLSCR
Trigger: CCTACAACTCAACAGCATCCACCTCCCCTTCTTCTC...GGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGACTTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GTGTCCCAGGACAGGCCTCAGCCCCACTTCCTCCATCCTAACAAATTCCGGGTTCCAGCAAGACCTTCCTaGCAACTGCAGTTGGTGCCT +
Preference number: 4 (lower is better)
Translates to: VSQDRPQPHFLHPNKFRVPARPS*QLQLVP
Trigger: AGGCACCAACTGCAGTTGCCAGGAAGGTCTTGCTGG...AACCCGGAATTTGTTAGGATGGAGGAAGTGGGGCTGAGGCCTGTCCTGGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TCCCCCAAGTCTGTGCCTTGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCACCACTTCACAGAACTaGCCAGAGAATCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: SPKSVPWEAAETWRHRASTTSQN*PENPAL
Trigger: CAGTGCAGGATTCTCTGGCCAGTTCTGTGAAGTGGT...GGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCAAGGCACAGACTTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CAGAGGCCACTGTCCTCCAGCCTATGCATGCTTGAGGCTCTGAGCCACTTACACCACCTCCTGCTGACTTaGGCTGTAAGTGCCCTCAGA +
Preference number: 4 (lower is better)
Translates to: QRPLSSSLCMLEALSHLHHLLLT*AVSALR
Trigger: TCTGAGGGCACTTACAGCCCAAGTCAGCAGGAGGTG...GTGTAAGTGGCTCAGAGCCTCAAGCATGCATAGGCTGGAGGACAGTGGCCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp CATATCATGGGCACCAACATGTGCCCTGTATCCAGCCCAGCAGGTCAGAGAAGTACAGCCTCCAAGCTCTaGGGGCTCACAGGTATAGCC +
Preference number: 4 (lower is better)
Translates to: HIMGTNMCPVSSPAGQRSTASKL*GLTGIA
Trigger: GGCTATACCTGTGAGCCCTCAGAGCTTGGAGGCTGT...ACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGTGCCCATGATATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp TACAATCTGCAGACCAACACATCCCTATGTATAGTCTCCTTCTCCTTCTCCTCTAGGCAGGACGCGTTGTaGGCGCAGGGCGCAGAGGCG +
Preference number: 4 (lower is better)
Translates to: YNLQTNTSLCIVSFSFSSRQDAL*AQGAEA
Trigger: CGCCTCTGCGCCCTGCGCGCACAACGCGTCCTGCCT...AGAGGAGAAGGAGAAGGAGACTATACATAGGGATGTGTTGGTCTGCAGATTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp ATGGGGGCACATCCTGTGGATGTCCCAGCTCTGGAAACAGTCTCCTTGGGTCTCTGGCAGCCTGTGAGCTaGACAGAACAGTCATGTCCA +
Preference number: 4 (lower is better)
Translates to: MGAHPVDVPALETVSLGLWQPVS*TEQSCP
Trigger: TGGACATGACTGTTCTGTGCAGCTCACAGGCTGCCA...GAGACCCAAGGAGACTGTTTCCAGAGCTGGGACATCCACAGGATGTGCCCCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp TATGTGGTCAATAAAACTGGGGAGAGGGCTGTAGTCCTGAGTCCTACAAGGAGCGAGGCAGGCACAGGCTaGAGGCACTGCTACCTCCAG +
Preference number: 4 (lower is better)
Translates to: YVVNKTGERAVVLSPTRSEAGTG*RHCYLQ
Trigger: CTGGAGGTAGCAGTGCCTGCAGCCTGTGCCTGCCTC...GCTCCTTGTAGGACTCAGGACTACAGCCCTCTCCCCAGTTTTATTGACCACATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CCTGCCCAAAGGGCTTTTGTTCTGGAAACCAAGGAGACTCCTCCCTATCCCAGCTCAGAGACACAACCCTaGGTGAGGTTGGAGGACTGG +
Preference number: 4 (lower is better)
Translates to: PAQRAFVLETKETPPYPSSETQP*VRLEDW
Trigger: CCAGTCCTCCAACCTCACCCAGGGTTGTGTCTCTGA...GCTGGGATAGGGAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CAGGTCAGAGAAGTACACACTCTCACAGCCTCCTCTGCTTCCCTGAGTTGTTCCACTGGCGGCGCTTTCTaGCAGCCAGGATTCCTGAGA +
Preference number: 4 (lower is better)
Translates to: QVREVHTLTASSASLSCSTGGAF*QPGFLR
Trigger: TCTCAGGAATCCTGGCTGCCAGAAAGCGCCGCCAGT...GGAACAACTCAGGGAAGCAGAGGAGGCTGTGAGAGTGTGTACTTCTCTGACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATTACAATCTGCAGCTGGGGCACACACAGTaGCCCGTGGTGGCATGGCTG +
Preference number: 4 (lower is better)
Translates to: VVPRHEALTTVITHYNLQLGHTQ*PVVAWL
Trigger: CAGCCATGCCACCACGGGGCACTGTGTGTGCCCCAG...CTGCAGATTGTAATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CACTCCTCCCCCTTGTCTCAGCAAGAACACCATCTCCCCCAAGTGAGAGTACTTATTCAAATATGCCACTaGCCACCCGGCAAGTGCCCC +
Preference number: 4 (lower is better)
Translates to: HSSPLSQQEHHLPQVRVLIQICH*PPGKCP
Trigger: GGGGCACTTGCCGGGTGGCCAGTGGCATATTTGAAT...AAGTACTCTCACTTGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CAA 72 bp CGCTCCTTGGTTCCTACAGACCTGCCCAAAGGGCTTTaGTTCTGGAAACCAAGGAGACTCCTCCCTATCCCA +
Preference number: 4 (lower is better)
Translates to: RSLVPTDLPKGL*FWKPRRLLPIP
Trigger: TGGGATAGGGAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGGTCTGTAGGAACCAAGGAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CAA 72 bp TGGGAGGCAGCTGAAACCTGGAGACACCGAGCTTCCTaGTGTAAAAGTCACCTGGCGTTTGCACATGGGAAC +
Preference number: 4 (lower is better)
Translates to: WEAAETWRHRAS*CKSHLAFAHGN
Trigger: GTTCCCATGTGCAAACGCCAGGTGACTTTTACACAAGGAAGCTCGGTGTCTCCAGGTTTCAGCTGCCTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp CCTGCCCAAAGGGCTTTTGTTCTGGAAACCAAGGAGACTCCTCCCTATCCCAGCAGTCAGGCTCGCAACTaGATCATTGGCAAACTGGAG +
Preference number: 4 (lower is better)
Translates to: PAQRAFVLETKETPPYPSSQARN*IIGKLE
Trigger: CTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACT...GCTGGGATAGGGAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp TATGTGGTCAATAAAACTGGGGAGAGGGCTGTAGTCCTGAGTCCTACAAGGAGCCCTCTGGTGGCACCTTaGGGACACTGTCCATCTCCA +
Preference number: 4 (lower is better)
Translates to: YVVNKTGERAVVLSPTRSPLVAP*GHCPSP
Trigger: TGGAGATGGACAGTGTCCTCAAGGTGCCACCAGAGG...GCTCCTTGTAGGACTCAGGACTACAGCCCTCTCCCCAGTTTTATTGACCACATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTAACCATCTGGGTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATCCAGATTTTGGCAGGTaGCCCCATGCTGGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: VTIWVVPRHEALTTVITHPDFGR*PHAGKA
Trigger: GGCCTTGCCAGCATGGGGGCACCTGCCAAAATCTGG...ATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCACCCAGATGGTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp ATGGGGGCACATCCTGTGGATGTCCCAGCTCTGGAAACAGTCTCCTTGGGTCTCGTCACTTCCACCTGGTaGCAATGCCCATCATTTAAG +
Preference number: 4 (lower is better)
Translates to: MGAHPVDVPALETVSLGLVTSTW*QCPSFK
Trigger: CTTAAATGATGGGCATTGGCACCAGGTGGAAGTGAC...GAGACCCAAGGAGACTGTTTCCAGAGCTGGGACATCCACAGGATGTGCCCCCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CCTGCCCAAAGGGCTTTTGTTCTGGAAACCAAGGAGACTCCTCCCTATCCCAGCTCATTCCAGGTGACGTaGCACGTGCCACCATTGAAA +
Preference number: 4 (lower is better)
Translates to: PAQRAFVLETKETPPYPSSFQVT*HVPPLK
Trigger: TTTCAATGGTGGCACGTGCCACGTCACCTGGAATGA...GCTGGGATAGGGAGGAGTCTCCTTGGTTTCCAGAACAAAAGCCCTTTGGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CAA 72 bp TGCAGAAGCTGCCTGATGTCCATCTGCTGGACACTGTaGTTTGGCACACAACAGAGCCTTCCTTGGCAACAG +
Preference number: 4 (lower is better)
Translates to: CRSCLMSICWTL*FGTQQSLPWQQ
Trigger: CTGTTGCCAAGGAAGGCTCTGTTGTGTGCCAAACAACAGTGTCCAGCAGATGGACATCAGGCAGCTTCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CAA 72 bp AGGCTAAACCTTCAGGCCAATGCCCTGGGAGAGGAGTaGTCAGAAGTCACTTGCACTGAGTGTCCACAGGAT +
Preference number: 4 (lower is better)
Translates to: RLNLQANALGEE*SEVTCTECPQD
Trigger: ATCCTGTGGACACTCAGTGCAAGTGACTTCTGACAACTCCTCTCCCAGGGCATTGGCCTGAAGGTTTAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
3UTR CAA 72 bp AGGACTACACAAAGGAACAAGCTCCACTCCTCCCCCTaGTCTCAGCAAGAACACCATCTCCCCCAAGTGAGA +
Preference number: 4 (lower is better)
Translates to: RTTQRNKLHSSP*SQQEHHLPQVR
Trigger: TCTCACTTGGGGGAGATGGTGTTCTTGCTGAGACAAGGGGGAGGAGTGGAGCTTGTTCCTTTGTGTAGTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp TACAATCTGCAGACCAACACATCCCTATGTATAGTCTCCTTCTCCTTCTCCTCTCGTGGAGGCCAGACTTaGAGGTGGGGATGCAGGTGG +
Preference number: 4 (lower is better)
Translates to: YNLQTNTSLCIVSFSFSSRGGQT*RWGCRW
Trigger: CCACCTGCATCCCCACCTTCAAGTCTGGCCTCCACG...AGAGGAGAAGGAGAAGGAGACTATACATAGGGATGTGTTGGTCTGCAGATTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTAACCATCTGGGTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATTCAGGCAGCAGAAGGTaGCCTTCCACACGCACATCC +
Preference number: 4 (lower is better)
Translates to: VTIWVVPRHEALTTVITHSGSRR*PSTRTS
Trigger: GGATGTGCGTGTGGAAGGGCACCTTCTGCTGCCTGA...ATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCACCCAGATGGTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp TTCTCGCTTAGCATCCAGGGTCTCTTAACAAAGCTTCTACTGATCTCCTGGTTCCTGCCAGCGAGCCGTTaGGCACCGCCAACCAGATAT +
Preference number: 4 (lower is better)
Translates to: FSLSIQGLLTKLLLISWFLPASR*APPTRY
Trigger: ATATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAG...GAACCAGGAGATCAGTAGAAGCTTTGTTAAGAGACCCTGGATGCTAAGCGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTGTGCAGGCAGGGCGCTaGCGAGCACTCGTCCACCTC +
Preference number: 4 (lower is better)
Translates to: RKHPSETCRKLCTFDLISVQAGR*RALVHL
Trigger: GAGGTGGACGAGTGCTCGTCAGCGCCCTGCCTGCAC...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp GTAACCATCTGGGTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATGGCACGTGCCACCATTaGAACAGGGATTGGGATTGC +
Preference number: 4 (lower is better)
Translates to: VTIWVVPRHEALTTVITHGTCHH*NRDWDC
Trigger: GCAATCCCAATCCCTGTTTCAATGGTGGCACGTGCC...ATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCACCCAGATGGTTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp TACAATCTGCAGACCAACACATCCCTATGTATAGTCTCCTTCTCCTTCTCCTCTACACGTTGTGGCCTGTaGACACAGCAGGAGGGCCCT +
Preference number: 4 (lower is better)
Translates to: YNLQTNTSLCIVSFSFSSTRCGL*TQQEGP
Trigger: AGGGCCCTCCTGCTGTGTTCACAGGCCACAACGTGT...AGAGGAGAAGGAGAAGGAGACTATACATAGGGATGTGTTGGTCTGCAGATTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTAGGCACGAGCCTCCGTaGAGGCAGGGCGCTGACGAG +
Preference number: 4 (lower is better)
Translates to: RKHPSETCRKLCTFDLISRHEPP*RQGADE
Trigger: CTCGTCAGCGCCCTGCCTGCACGGAGGCTCGTGCCT...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATTACAATCTGCAGGGTACGAAATCTCAGTaGCAGACCCAGGGAGGCAGC +
Preference number: 4 (lower is better)
Translates to: VVPRHEALTTVITHYNLQGTKSQ*QTQGGS
Trigger: GCTGCCTCCCTGGGTCTGGCACTGAGATTTCGTACC...CTGCAGATTGTAATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp TACAATCTGCAGACCAACACATCCCTATGTATAGTCTCCTTCTCCTTCTCCTCTGACTTGGGCTGTAAGTaGCCTCAGACTGGCGGCGCT +
Preference number: 4 (lower is better)
Translates to: YNLQTNTSLCIVSFSFSSDLGCK*PQTGGA
Trigger: AGCGCCGCCAGTCTGAGGGCACTTACAGCCCAAGTC...AGAGGAGAAGGAGAAGGAGACTATACATAGGGATGTGTTGGTCTGCAGATTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTGCGCACGGCTGGCTCTaGCACTCGTCCACGTCCAGC +
Preference number: 4 (lower is better)
Translates to: RKHPSETCRKLCTFDLISAHGWL*HSSTSS
Trigger: GCTGGACGTGGACGAGTGCCAGAGCCAGCCGTGCGC...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp CAGGTCAGAGAAGTACACACTCTCACAGCCTCCTCTGCTTCCCTGAGTTGTTCCAGGCATGGTTCCGACTaGCATTCATCCATATCTTCC +
Preference number: 4 (lower is better)
Translates to: QVREVHTLTASSASLSCSRHGSD*HSSISS
Trigger: GGAAGATATGGATGAATGCCAGTCGGAACCATGCCT...GGAACAACTCAGGGAAGCAGAGGAGGCTGTGAGAGTGTGTACTTCTCTGACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TACAATCTGCAGACCAACACATCCCTATGTATAGTCTCCTTCTCCTTCTCCTCTGAAGCTGTTAGGATCTaGGCCCTGGGGCACACACAG +
Preference number: 4 (lower is better)
Translates to: YNLQTNTSLCIVSFSFSSEAVRI*ALGHTQ
Trigger: CTGTGTGTGCCCCAGGGCCCAGATCCTAACAGCTTC...AGAGGAGAAGGAGAAGGAGACTATACATAGGGATGTGTTGGTCTGCAGATTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TATGTGGTCAATAAAACTGGGGAGAGGGCTGTAGTCCTGAGTCCTACAAGGAGCTTTGGGCCTAGTTGGTaGAGCAGAAAAGAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: YVVNKTGERAVVLSPTRSFGPSW*SRKEAE
Trigger: CTCAGCCTCTTTTCTGCTCCACCAACTAGGCCCAAA...GCTCCTTGTAGGACTCAGGACTACAGCCCTCTCCCCAGTTTTATTGACCACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp GTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATTACAATCTGCAGGCACTCGTAGTGATCTaGCAGATTTTGGCAGGTGCC +
Preference number: 4 (lower is better)
Translates to: VVPRHEALTTVITHYNLQALVVI*QILAGA
Trigger: GGCACCTGCCAAAATCTGGCAGATCACTACGAGTGC...CTGCAGATTGTAATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TACAATCTGCAGACCAACACATCCCTATGTATAGTCTCCTTCTCCTTCTCCTCTGTGAGGTTGGAGGACTaGCCAGCTTCCAGTTCACTG +
Preference number: 4 (lower is better)
Translates to: YNLQTNTSLCIVSFSFSSVRLED*PASSSL
Trigger: CAGTGAACTGGAAGCTGGCCAGTCCTCCAACCTCAC...AGAGGAGAAGGAGAAGGAGACTATACATAGGGATGTGTTGGTCTGCAGATTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp GTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATTACAATCTGCAGCATTCAAGCAAGGGCTaGCTTCACAGGGTTTGTCGA +
Preference number: 4 (lower is better)
Translates to: VVPRHEALTTVITHYNLQHSSKG*LHRVCR
Trigger: TCGACAAACCCTGTGAAGCCAGCCCTTGCTTGAATG...CTGCAGATTGTAATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR TCA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTATTGAGGCACGGCCCTaGGGCACACTCATCCACATC +
Preference number: 4 (lower is better)
Translates to: RKHPSETCRKLCTFDLISIEARP*GTLIHI
Trigger: GATGTGGATGAGTGTGCCTCAGGGCCGTGCCTCAAT...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CCA 90 bp TACAATCTGCAGACCAACACATCCCTATGTATAGTCTCCTTCTCCTTCTCCTCTAGCGTCACTTCCACCTaGTGCCAATGCCCATCATTT +
Preference number: 4 (lower is better)
Translates to: YNLQTNTSLCIVSFSFSSSVTST*CQCPSF
Trigger: AAATGATGGGCATTGGCACCAGGTGGAAGTGACGCT...AGAGGAGAAGGAGAAGGAGACTATACATAGGGATGTGTTGGTCTGCAGATTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR GCA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTAACAGGGATTGGGATTaGACGTGTCCTCAGAGACAC +
Preference number: 4 (lower is better)
Translates to: RKHPSETCRKLCTFDLISNRDWD*TCPQRH
Trigger: GTGTCTCTGAGGACACGTGCAATCCCAATCCCTGTT...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 90 bp CGGCAGCCGAGACTCACGGCCGGAGACCCGGGCCAGGCCACGAAGTaGTCGCGCGCCCCAGACACCGTGCCAGACCGCGGTGGCGCCAAG +
Preference number: 5 (lower is better)
Translates to: RQPRLTAGDPGQATK*SRAPDTVPDRGGAK
Trigger: CTTGGCGCCACCGCGGTCTGGCACGGTGTCTGGGGCGCGCGAGCACTTCGTGGCCTGGCCCGGGTCTCCGGCCGTGAGTCTCGGCTGCCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp GGAGGGCAGCGACACTCGAAGCGGCCGTCGGGGCGCGCATGGCATTaGCCCCGGACACAGGGAGTGGAGCGACATGGGTCAGCGCGGATC +
Preference number: 5 (lower is better)
Translates to: GGQRHSKRPSGRAWH*PRTQGVERHGSARI
Trigger: GATCCGCGCTGACCCATGTCGCTCCACTCCCTGTGTCCGGGGCCAATGCCATGCGCGCCCCGACGGCCGCTTCGAGTGTCGCTGCCCTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp AAGCCCGGAGGGCAGCGACACTCGAAGCGGCCGTCGGGGCGCGCATaGCATTGGCCCCGGACACAGGGAGTGGAGCGACATGGGTCAGCG +
Preference number: 5 (lower is better)
Translates to: KPGGQRHSKRPSGRA*HWPRTQGVERHGSA
Trigger: CGCTGACCCATGTCGCTCCACTCCCTGTGTCCGGGGCCAATGCCATGCGCGCCCCGACGGCCGCTTCGAGTGTCGCTGCCCTCCGGGCTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp GCGGCGGAGACGGCGCGCAGTAGCCCAGCCTCGGAGTCGCGCGTGCGGAAGGCCTGGCACGTGCCACCATaGAAACAGGGATTGGGATTG +
Preference number: 5 (lower is better)
Translates to: AAETARSSPASESRVRKAWHVPP*KQGLGL
Trigger: CAATCCCAATCCCTGTTTCAATGGTGGCACGTGCCA...GGCCTTCCGCACGCGCGACTCCGAGGCTGGGCTACTGCGCGCCGTCTCCGCCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS CCA 90 bp CACAAAGCCATCTGGAACCTCCTCACAGGTGGCAGGAGGCAGGCATaGCTGCCTGGGGCACCATCGCTGCTGGGCACAGGTGGGCCCCGT +
Preference number: 5 (lower is better)
Translates to: HKAIWNLLTGGRRQA*LPGAPSLLGTGGPR
Trigger: ACGGGGCCCACCTGTGCCCAGCAGCGATGGTGCCCCAGGCAGCCATGCCTGCCTCCTGCCACCTGTGAGGAGGTTCCAGATGGCTTTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS TCA 90 bp AGGTCCCCGGTGGGCAGCGGCAGAAGTAACCGTGGAGGCCAGACTTaGAGGTGGGGATGCAGGTGGCAGCCAGTGGGCAGGTATGGCCCT +
Preference number: 5 (lower is better)
Translates to: RSPVGSGRSNRGGQT*RWGCRWQPVGRYGP
Trigger: AGGGCCATACCTGCCCACTGGCTGCCACCTGCATCCCCACCTTCAAGTCTGGCCTCCACGGTTACTTCTGCCGCTGCCCACCGGGGACCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 90 bp AGGGTAACGGGAAGTCGCCAAGTGCCACGCGGCCCAGGCAGCCCGTaGAGTTCTCAGCCAGTAGCAGAGGCACTGCACCCGGACCCTGCA +
Preference number: 5 (lower is better)
Translates to: RVTGSRQVPRGPGSP*SSQPVAEALHPDPA
Trigger: TGCAGGGTCCGGGTGCAGTGCCTCTGCTACTGGCTGAGAACTTCACGGGCTGCCTGGGCCGCGTGGCACTTGGCGACTTCCCGTTACCCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp CACCTGCGGCGGAGACGGCGCGCAGTAGCCCAGCCTCGGAGTCGCGCGTGCGGACTCGCAACTGAATCATaGGCAAACTGGAGCAACAGG +
Preference number: 5 (lower is better)
Translates to: HLRRRRRAVAQPRSRACGLATES*ANWSNR
Trigger: CCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAG...TCCGCACGCGCGACTCCGAGGCTGGGCTACTGCGCGCCGTCTCCGCCGCAGGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000147600.3
CDS TCA 90 bp GGCCCGATGCACATTCGTCCTCATCCACTTCGCACCGCTCTCCACTaGAGCCTGGCCAGCAGAGGCAGCGGAAGCTCCGGAAGCCGTCGA +
Preference number: 5 (lower is better)
Translates to: GPMHIRPHPLRTALH*SLASRGSGSSGSRR
Trigger: TCGACGGCTTCCGGAGCTTCCGCTGCCTCTGCTGGCCAGGCTTCAGTGGAGAGCGGTGCGAAGTGGATGAGGACGAATGTGCATCGGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 90 bp AAGCCAGCGGCGTGGCTGAAGCTGAAGGCTCCCGGGAAGATGGCCTaGACACCCCCGTACAAGGTCGGGTCAGAGCGCTGCAAGCACTGG +
Preference number: 5 (lower is better)
Translates to: KPAAWLKLKAPGKMA*TPPYKVGSERCKHW
Trigger: CCAGTGCTTGCAGCGCTCTGACCCGACCTTGTACGGGGGTGTTCAGGCCATCTTCCCGGGAGCCTTCAGCTTCAGCCACGCCGCTGGCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 90 bp TCACAAGGGGCGCCATCCTTGCATGTGGAGTTGAGGTTGCATCCCTaGGGCAGGACAGGCAACCTGCAGCGCGGGCCGGAGAAGCCCGGA +
Preference number: 5 (lower is better)
Translates to: SQGAPSLHVELRLHP*GRTGNLQRGPEKPG
Trigger: TCCGGGCTTCTCCGGCCCGCGCTGCAGGTTGCCTGTCCTGCCTCAGGGATGCAACCTCAACTCCACATGCAAGGATGGCGCCCCTTGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 90 bp GTAAGTGCCCTCAGACTGGCGGCGCTTTCTGGCAGCCAGGATTCCTaGGAGGAGGCCCAGGAGGAGAAGGAGGAGGCAGGCACAGGCTGC +
Preference number: 5 (lower is better)
Translates to: VSALRLAALSGSQDS*EEAQEEKEEAGTGC
Trigger: GCAGCCTGTGCCTGCCTCCTCCTTCTCCTCCTGGGCCTCCTCTCAGGAATCCTGGCTGCCAGAAAGCGCCGCCAGTCTGAGGGCACTTAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp TGCACATTCGTCCTCATCCACTTCGCACCGCTCTCCACTGAAGCCTaGCCAGCAGAGGCAGCGGAAGCTCCGGAAGCCGTCGAGGCAGGA +
Preference number: 5 (lower is better)
Translates to: CTFVLIHFAPLSTEA*PAEAAEAPEAVEAG
Trigger: TCCTGCCTCGACGGCTTCCGGAGCTTCCGCTGCCTCTGCTGGCCAGGCTTCAGTGGAGAGCGGTGCGAAGTGGATGAGGACGAATGTGCA
63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp TTGAAGGTGGGGATGCAGGTGGCAGCCAGTGGGCAGGTATGGCCCTaGCAGCCTGTGAGCTGCACAGAACAGTCATGTCCACCCCAGGCC +
Preference number: 5 (lower is better)
Translates to: LKVGMQVAASGQVWP*QPVSCTEQSCPPQA
Trigger: GGCCTGGGGTGGACATGACTGTTCTGTGCAGCTCACAGGCTGCCAGGGCCATACCTGCCCACTGGCTGCCACCTGCATCCCCACCTTCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp GACACTGTCCATCTCCAGACGAGCCCCAGCCACCTCCTGCTGACTTaGGCTGTAAGTGCCCTCAGACTGGCGGCGCTTTCTGGCAGCCAG +
Preference number: 5 (lower is better)
Translates to: DTVHLQTSPSHLLLT*AVSALRLAALSGSQ
Trigger: CTGGCTGCCAGAAAGCGCCGCCAGTCTGAGGGCACTTACAGCCCAAGTCAGCAGGAGGTGGCTGGGGCTCGTCTGGAGATGGACAGTGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 90 bp TCTCCAGACGAGCCCCAGCCACCTCCTGCTGACTTGGGCTGTAAGTaGCCTCAGACTGGCGGCGCTTTCTGGCAGCCAGGATTCCTGAGA +
Preference number: 5 (lower is better)
Translates to: SPDEPQPPPADLGCK*PQTGGAFWQPGFLR
Trigger: TCTCAGGAATCCTGGCTGCCAGAAAGCGCCGCCAGTCTGAGGGCACTTACAGCCCAAGTCAGCAGGAGGTGGCTGGGGCTCGTCTGGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 90 bp GAGAGTAGCCAGGGTTCCGGCAAGCAGGGTGGTACGAAATCTCAGTaGCAGACCCAGGGAGGCAGCAGCTGGCACCAATCCCCACACAGA +
Preference number: 5 (lower is better)
Translates to: ESSQGSGKQGGTKSQ*QTQGGSSWHQSPHR
Trigger: TCTGTGTGGGGATTGGTGCCAGCTGCTGCCTCCCTGGGTCTGGCACTGAGATTTCGTACCACCCTGCTTGCCGGAACCCTGGCTACTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp CGAGAAGGTCGTATTCTGGCCACAGAAAGGCCCATAGGTCCCCGGTaGGCAGCGGCAGAAGTAACCGTGGAGGCCAGACTTGAAGGTGGG +
Preference number: 5 (lower is better)
Translates to: REGRILATERPIGPR*AAAEVTVEARLEGG
Trigger: CCCACCTTCAAGTCTGGCCTCCACGGTTACTTCTGCCGCTGCCCACCGGGGACCTATGGGCCTTTCTGTGGCCAGAATACGACCTTCTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp AGTGTAAGGATGAGCACCGCAGTGCCATGTCTCGAGAGTGTGGCTTaGAGCACGGCCCCCACCAGAACCAGCTCCAAGCTGTCCCGAGTG +
Preference number: 5 (lower is better)
Translates to: SVRMSTAVPCLESVA*STAPTRTSSKLSRV
Trigger: CACTCGGGACAGCTTGGAGCTGGTTCTGGTGGGGGCCGTGCTCCAAGCCACACTCTCGAGACATGGCACTGCGGTGCTCATCCTTACACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 90 bp GCAACAGGCCGGCAGGTTCGCGGGTGCGGAGGAAAAATGACACGGTaGGGTTTGGGCCTAGTTGGTGGAGCAGAAAAGAGGCTGAGCTCG +
Preference number: 5 (lower is better)
Translates to: ATGRQVRGCGGKMTR*GLGLVGGAEKRLSS
Trigger: CGAGCTCAGCCTCTTTTCTGCTCCACCAACTAGGCCCAAACCTCACCGTGTCATTTTTCCTCCGCACCCGCGAACCTGCCGGCCTGTTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 90 bp CCCAGGCCTCAGGGCACTGGCAGATGTAGCCTGCTACAGTGTCGCTaGAGGTTCCACCATGCAGGCATGGTTCCGACTGGCATTCATCCA +
Preference number: 5 (lower is better)
Translates to: PRPQGTGRCSLLQCR*RFHHAGMVPTGIHP
Trigger: TGGATGAATGCCAGTCGGAACCATGCCTGCATGGTGGAACCTGCAGCGACACTGTAGCAGGCTACATCTGCCAGTGCCCTGAGGCCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 90 bp ACAGTCATGTCCACCCCAGGCCTCAGGGCACTGGCAGATGTAGCCTaGTACAGTGTCGCTGCAGGTTCCACCATGCAGGCATGGTTCCGA +
Preference number: 5 (lower is better)
Translates to: TVMSTPGLRALADVA*YSVAAGSTMQAWFR
Trigger: TCGGAACCATGCCTGCATGGTGGAACCTGCAGCGACACTGTAGCAGGCTACATCTGCCAGTGCCCTGAGGCCTGGGGTGGACATGACTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 90 bp TCGTGGCTCCACCCAAGCCAAAAGTGGCAGCAGGAACCTCATCAGTaGATGTGGCTCCACGGTAAGGTCTCGGGCAGTCGCAGCGGAAGT +
Preference number: 5 (lower is better)
Translates to: SWLHPSQKWQQEPHQ*MWLHGKVSGSRSGS
Trigger: ACTTCCGCTGCGACTGCCCGAGACCTTACCGTGGAGCCACATGCACTGATGAGGTTCCTGCTGCCACTTTTGGCTTGGGTGGAGCCACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp CTCCACCCAAGCCAAAAGTGGCAGCAGGAACCTCATCAGTGCATGTaGCTCCACGGTAAGGTCTCGGGCAGTCGCAGCGGAAGTGAGTCC +
Preference number: 5 (lower is better)
Translates to: LHPSQKWQQEPHQCM*LHGKVSGSRSGSES
Trigger: GGACTCACTTCCGCTGCGACTGCCCGAGACCTTACCGTGGAGCCACATGCACTGATGAGGTTCCTGCTGCCACTTTTGGCTTGGGTGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp TCTGGCCCTCACTCAGGAACACAGTCAGGCTCGCAACTGAATCATTaGCAAACTGGAGCAACAGGCCGGCAGGTTCGCGGGTGCGGAGGA +
Preference number: 5 (lower is better)
Translates to: SGPHSGTQSGSQLNH*QTGATGRQVRGCGG
Trigger: TCCTCCGCACCCGCGAACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACTGTGTTCCTGAGTGAGGGCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS-3UTR CAA 90 bp AGCCCTCCTTCCCCAGGGCTCTGTCTTGGTGGTGTGCTCAGCTACCAGGGAGCGTGGCACGTGCCACCATaGAAACAGGGATTGGGATTG +
Preference number: 5 (lower is better)
Translates to: SPPSPGLCLGGVLSYQGAWHVPP*KQGLGL
Trigger: CAATCCCAATCCCTGTTTCAATGGTGGCACGTGCCA...CGCTCCCTGGTAGCTGAGCACACCACCAAGACAGAGCCCTGGGGAAGGAGGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 90 bp CAGTGCCCCGTGGTGGCATGGCTGAGTAGCACAGCCTCCAAGCTCTaGGGGCTCACAGGTATAGCCACCACTTTCTGTAGCCTGGCACTT +
Preference number: 5 (lower is better)
Translates to: QCPVVAWLSSTASKL*GLTGIATTFCSLAL
Trigger: AAGTGCCAGGCTACAGAAAGTGGTGGCTATACCTGTGAGCCCTCAGAGCTTGGAGGCTGTGCTACTCAGCCATGCCACCACGGGGCACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp TCGCGGGTGCGGAGGAAAAATGACACGGTGAGGTTTGGGCCTAGTTaGTGGAGCAGAAAAGAGGCTGAGCTCGTGGCTCCACCCAAGCCA +
Preference number: 5 (lower is better)
Translates to: SRVRRKNDTVRFGPS*WSRKEAELVAPPKP
Trigger: TGGCTTGGGTGGAGCCACGAGCTCAGCCTCTTTTCTGCTCCACCAACTAGGCCCAAACCTCACCGTGTCATTTTTCCTCCGCACCCGCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp CTGCCTGAGCAGGCACTTGGCCACCTCCACCAGCCATCCTGCAGAAGCAGAGGCCTCGCAACTGAATCATaGGCAAACTGGAGCAACAGG +
Preference number: 5 (lower is better)
Translates to: LPEQALGHLHQPSCRSRGLATES*ANWSNR
Trigger: CCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAG...GCCTCTGCTTCTGCAGGATGGCTGGTGGAGGTGGCCAAGTGCCTGCTCAGGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 90 bp AGCCGCAGCTCCAGGGTTCCCAGGTGGAGCGTCACTTCCACCTGGTaGCAATGCCCATCATTTAAGGCTAGGTCAGGCAGTGTAAGGATG +
Preference number: 5 (lower is better)
Translates to: SRSSRVPRWSVTSTW*QCPSFKARSGSVRM
Trigger: CATCCTTACACTGCCTGACCTAGCCTTAAATGATGGGCATTGGCACCAGGTGGAAGTGACGCTCCACCTGGGAACCCTGGAGCTGCGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp GGAGCAGAAAAGAGGCTGAGCTCGTGGCTCCACCCAAGCCAAAAGTaGCAGCAGGAACCTCATCAGTGCATGTGGCTCCACGGTAAGGTC +
Preference number: 5 (lower is better)
Translates to: GAEKRLSSWLHPSQK*QQEPHQCMWLHGKV
Trigger: GACCTTACCGTGGAGCCACATGCACTGATGAGGTTCCTGCTGCCACTTTTGGCTTGGGTGGAGCCACGAGCTCAGCCTCTTTTCTGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp TTGCACGTGTCCTCAGAGACACAACCCTGGGTGAGGTTGGAGGACTaGCCAGCTTCCAGTTCACTGGGCCAACTTGAGTTCTCCATCGGG +
Preference number: 5 (lower is better)
Translates to: LHVSSETQPWVRLED*PASSSLGQLEFSIG
Trigger: CCCGATGGAGAACTCAAGTTGGCCCAGTGAACTGGAAGCTGGCCAGTCCTCCAACCTCACCCAGGGTTGTGTCTCTGAGGACACGTGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS-3UTR CAA 90 bp CATATCATGGGCACCAACATGTGCCCTGTATCCAGCCCAGCAGGTCAGAGAAGTCCGTGGAGGCCAGACTaGAAGGTGGGGATGCAGGTG +
Preference number: 5 (lower is better)
Translates to: HIMGTNMCPVSSPAGQRSPWRPD*KVGMQV
Trigger: CACCTGCATCCCCACCTTCAAGTCTGGCCTCCACGG...ACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGTGCCCATGATATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 90 bp GGTGAGGTTGGAGGACTGGCCAGCTTCCAGTTCACTGGGCCAACTTaGGTTCTCCATCGGGGAAGAGAAGAAGGGGAGGTGGATGCTGTT +
Preference number: 5 (lower is better)
Translates to: GEVGGLASFQFTGPT*VLHRGREEGEVDAV
Trigger: AACAGCATCCACCTCCCCTTCTTCTCTTCCCCGATGGAGAACTCAAGTTGGCCCAGTGAACTGGAAGCTGGCCAGTCCTCCAACCTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CCA 90 bp CGGGTGCGGAGGAAAAATGACACGGTGAGGTTTGGGCCTAGTTGGTaGAGCAGAAAAGAGGCTGAGCTCGTGGCTCCACCCAAGCCAAAA +
Preference number: 5 (lower is better)
Translates to: RVRRKNDTVRFGPSW*SRKEAELVAPPKPK
Trigger: TTTTGGCTTGGGTGGAGCCACGAGCTCAGCCTCTTTTCTGCTCCACCAACTAGGCCCAAACCTCACCGTGTCATTTTTCCTCCGCACCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp CATATCATGGGCACCAACATGTGCCCTGTATCCAGCCCAGCAGGTCAGAGAAGTCCACCTCCTGCTGACTaGGGCTGTAAGTGCCCTCAG +
Preference number: 5 (lower is better)
Translates to: HIMGTNMCPVSSPAGQRSPPPAD*GCKCPQ
Trigger: CTGAGGGCACTTACAGCCCAAGTCAGCAGGAGGTGG...ACTTCTCTGACCTGCTGGGCTGGATACAGGGCACATGTTGGTGCCCATGATATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 90 bp TCAAGCAAGGGCTGGCTTCACAGGGTTTGTCGAGACTCTGACATCTaGGGCCAGCAAGACCTTCCTGGCAACTGCAGTTGGTGCCTAAGG +
Preference number: 5 (lower is better)
Translates to: SSKGWLHRVCRDSDI*GQQDLPGNCSWCLR
Trigger: CCTTAGGCACCAACTGCAGTTGCCAGGAAGGTCTTGCTGGCCTCAGATGTCAGAGTCTCGACAAACCCTGTGAAGCCAGCCCTTGCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 90 bp CACAGAACTGGCCAGAGAATCCTGCACTGCAAGTACATTCAAATATaGCACTGGCCACCCGGCAAGTGCCCCCATTCAAGCAAGGGCTGG +
Preference number: 5 (lower is better)
Translates to: HRTGQRILHCKYIQI*HWPPGKCPHSSKGW
Trigger: CCAGCCCTTGCTTGAATGGGGGCACTTGCCGGGTGGCCAGTGGCATATTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAGTTCTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp TCACTCAGGAACACAGTCAGGCTCGCAACTGAATCATTGGCAAACTaGAGCAACAGGCCGGCAGGTTCGCGGGTGCGGAGGAAAAATGAC +
Preference number: 5 (lower is better)
Translates to: SLRNTVRLATESLAN*SNRPAGSRVRRKND
Trigger: GTCATTTTTCCTCCGCACCCGCGAACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACTGTGTTCCTGAGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CCA 90 bp TTGAAACAGGGATTGGGATTGCACGTGTCCTCAGAGACACAACCCTaGGTGAGGTTGGAGGACTGGCCAGCTTCCAGTTCACTGGGCCAA +
Preference number: 5 (lower is better)
Translates to: LKQGLGLHVSSETQP*VRLEDWPASSSLGQ
Trigger: TTGGCCCAGTGAACTGGAAGCTGGCCAGTCCTCCAACCTCACCCAGGGTTGTGTCTCTGAGGACACGTGCAATCCCAATCCCTGTTTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CCA 90 bp ACTGGCCAGAGAATCCTGCACTGCAAGTACATTCAAATATGCCACTaGCCACCCGGCAAGTGCCCCCATTCAAGCAAGGGCTGGCTTCAC +
Preference number: 5 (lower is better)
Translates to: TGQRILHCKYIQICH*PPGKCPHSSKGWLH
Trigger: GTGAAGCCAGCCCTTGCTTGAATGGGGGCACTTGCCGGGTGGCCAGTGGCATATTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp TACAATCTGCAGACCAACACATCCCTATGTATAGTCTCCTTCTCCTTCTCCTCTTCGAGGCAGGACGCGTaGTGCGCGCAGGGCGCAGAG +
Preference number: 5 (lower is better)
Translates to: YNLQTNTSLCIVSFSFSSSRQDA*CAQGAE
Trigger: CTCTGCGCCCTGCGCGCACAACGCGTCCTGCCTCGA...AGAGGAGAAGGAGAAGGAGACTATACATAGGGATGTGTTGGTCTGCAGATTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp GTAACCATCTGGGTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATCCTGCCAGCGAGCCGTaGCGCACCGCCAACCAGATA +
Preference number: 5 (lower is better)
Translates to: VTIWVVPRHEALTTVITHPASEP*RTANQI
Trigger: TATCTGGTTGGCGGTGCGCAACGGCTCGCTGGCAGG...ATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCACCCAGATGGTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp GATGTAGCCTGCTACAGTGTCGCTGCAGGTTCCACCATGCAGGCATaGTTCCGACTGGCATTCATCCATATCTTCCTGACATGTCAGGCC +
Preference number: 5 (lower is better)
Translates to: DVACYSVAAGSTMQA*FRLAFIHIFLTCQA
Trigger: GGCCTGACATGTCAGGAAGATATGGATGAATGCCAGTCGGAACCATGCCTGCATGGTGGAACCTGCAGCGACACTGTAGCAGGCTACATC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp CCGTTCTTCCACCTCTCTGGCCTTCTTGCTAGGGTCCCAAGAAGCCTTTTCAACAGCGATGAGGACACGTaGTGGCCTGTGAACACAGCA +
Preference number: 5 (lower is better)
Translates to: PFFHLSGLLARVPRSLFNSDEDT*WPVNTA
Trigger: TGCTGTGTTCACAGGCCACAACGTGTCCTCATCGCT...GTTGAAAAGGCTTCTTGGGACCCTAGCAAGAAGGCCAGAGAGGTGGAAGAACGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 90 bp GTAGGGTTTTCACCACTTCACAGAACTGGCCAGAGAATCCTGCACTaGAAGTACATTCAAATATGCCACTGGCCACCCGGCAAGTGCCCC +
Preference number: 5 (lower is better)
Translates to: VGFSPLHRTGQRILH*KYIQICHWPPGKCP
Trigger: GGGGCACTTGCCGGGTGGCCAGTGGCATATTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAGTTCTGTGAAGTGGTGAAAACCCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp GTAACCATCTGGGTGGTTCCCAGACATGAAGCCCTTACCACAGTCATAACACATTCTGTAGCCTGGCACTaGGTCCCTGGAGCACATGGG +
Preference number: 5 (lower is better)
Translates to: VTIWVVPRHEALTTVITHSVAWH*VPGAHG
Trigger: CCCATGTGCTCCAGGGACCAAGTGCCAGGCTACAGA...ATGTGTTATGACTGTGGTAAGGGCTTCATGTCTGGGAACCACCCAGATGGTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp TATGTGGTCAATAAAACTGGGGAGAGGGCTGTAGTCCTGAGTCCTACAAGGAGCGTGATCTGCCAGATTTaGGCAGGTGCCCCCATGCTG +
Preference number: 5 (lower is better)
Translates to: YVVNKTGERAVVLSPTRSVICQI*AGAPML
Trigger: CAGCATGGGGGCACCTGCCAAAATCTGGCAGATCAC...GCTCCTTGTAGGACTCAGGACTACAGCCCTCTCCCCAGTTTTATTGACCACATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 90 bp GGGAACGGCAGAGGCAGAGGTAGGGTTTTCACCACTTCACAGAACTaGCCAGAGAATCCTGCACTGCAAGTACATTCAAATATGCCACTG +
Preference number: 5 (lower is better)
Translates to: GNGRGRGRVFTTSQN*PENPALQVHSNMPL
Trigger: CAGTGGCATATTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAGTTCTGTGAAGTGGTGAAAACCCTACCTCTGCCTCTGCCGTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS-3UTR CAA 90 bp AGAAAACATCCATCAGAGACATGCAGGAAATTGTGCACATTTGACCTGATTTCTAGAAGCACAGTTCCCTaGAGCTCCTCAGGCAGCAGA +
Preference number: 5 (lower is better)
Translates to: RKHPSETCRKLCTFDLISRSTVP*SSSGSR
Trigger: TCTGCTGCCTGAGGAGCTCAAGGGAACTGTGCTTCT...AGAAATCAGGTCAAATGTGCACAATTTCCTGCATGTCTCTGATGGATGTTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CAA 90 bp CGGAGGGCAGCGACACTCGAAGCGGCCGTCGGGGCGCGCATGGCATaGGCCCCGGACACAGGGAGTGGAGCGACATGGGTCAGCGCGGAT +
Preference number: 6 (lower is better)
Translates to: RRAATLEAAVGARMA*APDTGSGATWVSAD
Trigger: ATCCGCGCTGACCCATGTCGCTCCACTCCCTGTGTCCGGGGCCAATGCCATGCGCGCCCCGACGGCCGCTTCGAGTGTCGCTGCCCTCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp GCGCACGGCTGGCTCTGGCACTCGTCCACGTCCAGCTaGCAGTTCGCACCGGCGTATCCCGGCGCGCACACG +
Preference number: 6 (lower is better)
Translates to: AHGWLWHSSTSS*QFAPAYPGAHT
Trigger: CGTGTGCGCGCCGGGATACGCCGGTGCGAACTGTCAGCTGGACGTGGACGAGTGCCAGAGCCAGCCGTGCGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp GGGCAGCGACACTCGAAGCGGCCGTCGGGGCGCGCATaGCATTGGCCCCGGACACAGGGAGTGGAGCGACAT +
Preference number: 6 (lower is better)
Translates to: GQRHSKRPSGRA*HWPRTQGVERH
Trigger: ATGTCGCTCCACTCCCTGTGTCCGGGGCCAATGCCATGCGCGCCCCGACGGCCGCTTCGAGTGTCGCTGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CAA 72 bp GCGACACTCGAAGCGGCCGTCGGGGCGCGCATGGCATaGGCCCCGGACACAGGGAGTGGAGCGACATGGGTC +
Preference number: 6 (lower is better)
Translates to: ATLEAAVGARMA*APDTGSGATWV
Trigger: GACCCATGTCGCTCCACTCCCTGTGTCCGGGGCCAATGCCATGCGCGCCCCGACGGCCGCTTCGAGTGTCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp TCCGCGCAGTCGCACCGGAAACCGTTGACCAGGTCGTaGCACACGCCACCGTGCGCGCACGGCTGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: SAQSHRKPLTRS*HTPPCAHGWLW
Trigger: CCAGAGCCAGCCGTGCGCGCACGGTGGCGTGTGTCACGACCTGGTCAACGGTTTCCGGTGCGACTGCGCGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 72 bp GCAGGAGGCAGGCATGGCTGCCTGGGGCACCATCGCTaGTGGGCACAGGTGGGCCCCGTGAAGTTCTCGGAG +
Preference number: 6 (lower is better)
Translates to: AGGRHGCLGHHR*WAQVGPVKFSE
Trigger: CTCCGAGAACTTCACGGGGCCCACCTGTGCCCAGCAGCGATGGTGCCCCAGGCAGCCATGCCTGCCTCCTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CCA 72 bp CGACACTCGAAGCGGCCGTCGGGGCGCGCATGGCATTaGCCCCGGACACAGGGAGTGGAGCGACATGGGTCA +
Preference number: 6 (lower is better)
Translates to: RHSKRPSGRAWH*PRTQGVERHGS
Trigger: TGACCCATGTCGCTCCACTCCCTGTGTCCGGGGCCAATGCCATGCGCGCCCCGACGGCCGCTTCGAGTGTCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp CGTAACCCGTGTCCGCGCAGTCGCACCGGAAACCGTTaGCCAGGTCGTGACACACGCCACCGTGCGCGCACG +
Preference number: 6 (lower is better)
Translates to: RNPCPRSRTGNR*PGRDTRHRART
Trigger: CGTGCGCGCACGGTGGCGTGTGTCACGACCTGGTCAACGGTTTCCGGTGCGACTGCGCGGACACGGGTTACG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp GGAAGCAGCCGGCAAAGACCCCGCCGCCCAGATAGATaGAGTAGGATCCCGGAGGCCCAGAGGCCACCGAGG +
Preference number: 6 (lower is better)
Translates to: GSSRQRPRRPDR*SRIPEAQRPPR
Trigger: CCTCGGTGGCCTCTGGGCCTCCGGGATCCTACTCCATCTATCTGGGCGGCGGGGTCTTTGCCGGCTGCTTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp GGAAGTCGCCAAGTGCCACGCGGCCCAGGCAGCCCGTaGAGTTCTCAGCCAGTAGCAGAGGCACTGCACCCG +
Preference number: 6 (lower is better)
Translates to: GSRQVPRGPGSP*SSQPVAEALHP
Trigger: CGGGTGCAGTGCCTCTGCTACTGGCTGAGAACTTCACGGGCTGCCTGGGCCGCGTGGCACTTGGCGACTTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp GCGTGGCTGAAGCTGAAGGCTCCCGGGAAGATGGCCTaGACACCCCCGTACAAGGTCGGGTCAGAGCGCTGC +
Preference number: 6 (lower is better)
Translates to: AWLKLKAPGKMA*TPPYKVGSERC
Trigger: GCAGCGCTCTGACCCGACCTTGTACGGGGGTGTTCAGGCCATCTTCCCGGGAGCCTTCAGCTTCAGCCACGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp CTCAGACTGGCGGCGCTTTCTGGCAGCCAGGATTCCTaGGAGGAGGCCCAGGAGGAGAAGGAGGAGGCAGGC +
Preference number: 6 (lower is better)
Translates to: LRLAALSGSQDS*EEAQEEKEEAG
Trigger: GCCTGCCTCCTCCTTCTCCTCCTGGGCCTCCTCTCAGGAATCCTGGCTGCCAGAAAGCGCCGCCAGTCTGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp GTCCTCATCCACTTCGCACCGCTCTCCACTGAAGCCTaGCCAGCAGAGGCAGCGGAAGCTCCGGAAGCCGTC +
Preference number: 6 (lower is better)
Translates to: VLIHFAPLSTEA*PAEAAEAPEAV
Trigger: GACGGCTTCCGGAGCTTCCGCTGCCTCTGCTGGCCAGGCTTCAGTGGAGAGCGGTGCGAAGTGGATGAGGAC
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp GCTGGCCCAGGTCCTGCAGCTGGTCAGGCCCAAAGCTaGGCATCACCAAGTGGGGGAGTCCATCATCCCAGC +
Preference number: 6 (lower is better)
Translates to: AGPGPAAGQAQS*ASPSGGVHHPS
Trigger: GCTGGGATGATGGACTCCCCCACTTGGTGATGCTCAGCTTTGGGCCTGACCAGCTGCAGGACCTGGGCCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS GCA 72 bp GAAGCTGTTAGGATCTGGGCCCTGGGGCACACACAGTaGCCCGTGGTGGCATGGCTGAGTAGCACAGCCTCC +
Preference number: 6 (lower is better)
Translates to: EAVRIWALGHTQ*PVVAWLSSTAS
Trigger: GGAGGCTGTGCTACTCAGCCATGCCACCACGGGGCACTGTGTGTGCCCCAGGGCCCAGATCCTAACAGCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp TCCACGCAGGCCCCTCCATGGGCACAAGGCAGAGGCTaGCAAGGTTCCCTGCGCTCACAACCCAGAAGCACA +
Preference number: 6 (lower is better)
Translates to: STQAPPWAQGRG*QGSLRSQPRST
Trigger: TGTGCTTCTGGGTTGTGAGCGCAGGGAACCTTGCCAGCCTCTGCCTTGTGCCCATGGAGGGGCCTGCGTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp TGCAGCTGGTCAGGCCCAAAGCTGAGCATCACCAAGTaGGGGAGTCCATCATCCCAGCGCCCAGGGAGGACC +
Preference number: 6 (lower is better)
Translates to: CSWSGPKLSITK*GSPSSQRPGRT
Trigger: GGTCCTCCCTGGGCGCTGGGATGATGGACTCCCCCACTTGGTGATGCTCAGCTTTGGGCCTGACCAGCTGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CAA 90 bp CCCGTACAAGGTCGGGTCAGAGCGCTGCAAGCACTGGCCCCCATTTaGACAGGGGCCCGATGCACATTCGTCCTCATCCACTTCGCACCG +
Preference number: 6 (lower is better)
Translates to: PVQGRVRALQALAPI*TGARCTFVLIHFAP
Trigger: CGGTGCGAAGTGGATGAGGACGAATGTGCATCGGGCCCCTGTCAAAATGGGGGCCAGTGCTTGCAGCGCTCTGACCCGACCTTGTACGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp TGGGGCACCATCGCTGCTGGGCACAGGTGGGCCCCGTaGAGTTCTCGGAGCAGGTGCAGTAGAAGTCATTCC +
Preference number: 6 (lower is better)
Translates to: WGTIAAGHRWAP*SSRSRCSRSHS
Trigger: GGAATGACTTCTACTGCACCTGCTCCGAGAACTTCACGGGGCCCACCTGTGCCCAGCAGCGATGGTGCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS GCA 72 bp AACCTCCCACCCACATACAGCCGCTGGCCCAGGTCCTaGAGCTGGTCAGGCCCAAAGCTGAGCATCACCAAG +
Preference number: 6 (lower is better)
Translates to: NLPPTYSRWPRS*SWSGPKLSITK
Trigger: CTTGGTGATGCTCAGCTTTGGGCCTGACCAGCTGCAGGACCTGGGCCAGCGGCTGTATGTGGGTGGGAGGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CCA 72 bp TCCAGGCACACAGTAGCAACGGAAGCTGTTAGGATCTaGGCCCTGGGGCACACACAGTGCCCCGTGGTGGCA +
Preference number: 6 (lower is better)
Translates to: SRHTVATEAVRI*ALGHTQCPVVA
Trigger: TGCCACCACGGGGCACTGTGTGTGCCCCAGGGCCCAGATCCTAACAGCTTCCGTTGCTACTGTGTGCCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp ATGAGCACCGCAGTGCCATGTCTCGAGAGTGTGGCTTaGAGCACGGCCCCCACCAGAACCAGCTCCAAGCTG +
Preference number: 6 (lower is better)
Translates to: MSTAVPCLESVA*STAPTRTSSKL
Trigger: CAGCTTGGAGCTGGTTCTGGTGGGGGCCGTGCTCCAAGCCACACTCTCGAGACATGGCACTGCGGTGCTCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CAA 72 bp GATGAGCACCGCAGTGCCATGTCTCGAGAGTGTGGCTaGGAGCACGGCCCCCACCAGAACCAGCTCCAAGCT +
Preference number: 6 (lower is better)
Translates to: DEHRSAMSRECG*EHGPHQNQLQA
Trigger: AGCTTGGAGCTGGTTCTGGTGGGGGCCGTGCTCCAAGCCACACTCTCGAGACATGGCACTGCGGTGCTCATC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CAA 90 bp CAGTGTAAGGATGAGCACCGCAGTGCCATGTCTCGAGAGTGTGGCTaGGAGCACGGCCCCCACCAGAACCAGCTCCAAGCTGTCCCGAGT +
Preference number: 6 (lower is better)
Translates to: QCKDEHRSAMSRECG*EHGPHQNQLQAVPS
Trigger: ACTCGGGACAGCTTGGAGCTGGTTCTGGTGGGGGCCGTGCTCCAAGCCACACTCTCGAGACATGGCACTGCGGTGCTCATCCTTACACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 72 bp CAGGGCACTGGCAGATGTAGCCTGCTACAGTGTCGCTaGAGGTTCCACCATGCAGGCATGGTTCCGACTGGC +
Preference number: 6 (lower is better)
Translates to: QGTGRCSLLQCR*RFHHAGMVPTG
Trigger: GCCAGTCGGAACCATGCCTGCATGGTGGAACCTGCAGCGACACTGTAGCAGGCTACATCTGCCAGTGCCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CAA 90 bp AGCACGGCCCCCACCAGAACCAGCTCCAAGCTGTCCCGAGTGTCTTaGAGAGTAGCCAGGGTTCCGGCAAGCAGGGTGGTACGAAATCTC +
Preference number: 6 (lower is better)
Translates to: STAPTRTSSKLSRVS*RVARVPASRVVRNL
Trigger: GAGATTTCGTACCACCCTGCTTGCCGGAACCCTGGCTACTCTCAAAGACACTCGGGACAGCTTGGAGCTGGTTCTGGTGGGGGCCGTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CAA 90 bp ATCTGGCCCTCACTCAGGAACACAGTCAGGCTCGCAACTGAATCATaGGCAAACTGGAGCAACAGGCCGGCAGGTTCGCGGGTGCGGAGG +
Preference number: 6 (lower is better)
Translates to: IWPSLRNTVRLATES*ANWSNRPAGSRVRR
Trigger: CCTCCGCACCCGCGAACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACTGTGTTCCTGAGTGAGGGCCAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS GCA 72 bp CACCCAAGCCAAAAGTGGCAGCAGGAACCTCATCAGTaGATGTGGCTCCACGGTAAGGTCTCGGGCAGTCGC +
Preference number: 6 (lower is better)
Translates to: HPSQKWQQEPHQ*MWLHGKVSGSR
Trigger: GCGACTGCCCGAGACCTTACCGTGGAGCCACATGCACTGATGAGGTTCCTGCTGCCACTTTTGGCTTGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp AGCCAAAAGTGGCAGCAGGAACCTCATCAGTGCATGTaGCTCCACGGTAAGGTCTCGGGCAGTCGCAGCGGA +
Preference number: 6 (lower is better)
Translates to: SQKWQQEPHQCM*LHGKVSGSRSG
Trigger: TCCGCTGCGACTGCCCGAGACCTTACCGTGGAGCCACATGCACTGATGAGGTTCCTGCTGCCACTTTTGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp AACACAGTCAGGCTCGCAACTGAATCATTGGCAAACTaGAGCAACAGGCCGGCAGGTTCGCGGGTGCGGAGG +
Preference number: 6 (lower is better)
Translates to: NTVRLATESLAN*SNRPAGSRVRR
Trigger: CCTCCGCACCCGCGAACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACTGTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CAA 72 bp CCCACCAGAACCAGCTCCAAGCTGTCCCGAGTGTCTTaGAGAGTAGCCAGGGTTCCGGCAAGCAGGGTGGTA +
Preference number: 6 (lower is better)
Translates to: PTRTSSKLSRVS*RVARVPASRVV
Trigger: TACCACCCTGCTTGCCGGAACCCTGGCTACTCTCAAAGACACTCGGGACAGCTTGGAGCTGGTTCTGGTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp CGGCAGGTTCGCGGGTGCGGAGGAAAAATGACACGGTaGGGTTTGGGCCTAGTTGGTGGAGCAGAAAAGAGG +
Preference number: 6 (lower is better)
Translates to: RQVRGCGGKMTR*GLGLVGGAEKR
Trigger: CCTCTTTTCTGCTCCACCAACTAGGCCCAAACCTCACCGTGTCATTTTTCCTCCGCACCCGCGAACCTGCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp CTGGCCCTCACTCAGGAACACAGTCAGGCTCGCAACTaGATCATTGGCAAACTGGAGCAACAGGCCGGCAGG +
Preference number: 6 (lower is better)
Translates to: LALTQEHSQARN*IIGKLEQQAGR
Trigger: CCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACTGTGTTCCTGAGTGAGGGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS TCA 72 bp GGAGGACTGGCCAGCTTCCAGTTCACTGGGCCAACTTaGGTTCTCCATCGGGGAAGAGAAGAAGGGGAGGTG +
Preference number: 6 (lower is better)
Translates to: GGLASFQFTGPT*VLHRGREEGEV
Trigger: CACCTCCCCTTCTTCTCTTCCCCGATGGAGAACTCAAGTTGGCCCAGTGAACTGGAAGCTGGCCAGTCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS TCA 72 bp TGGGATTGCACGTGTCCTCAGAGACACAACCCTGGGTaGGGTTGGAGGACTGGCCAGCTTCCAGTTCACTGG +
Preference number: 6 (lower is better)
Translates to: WDCTCPQRHNPG*GWRTGQLPVHW
Trigger: CCAGTGAACTGGAAGCTGGCCAGTCCTCCAACCTCACCCAGGGTTGTGTCTCTGAGGACACGTGCAATCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CCA 72 bp AAGAGGCTGAGCTCGTGGCTCCACCCAAGCCAAAAGTaGCAGCAGGAACCTCATCAGTGCATGTGGCTCCAC +
Preference number: 6 (lower is better)
Translates to: KRLSSWLHPSQK*QQEPHQCMWLH
Trigger: GTGGAGCCACATGCACTGATGAGGTTCCTGCTGCCACTTTTGGCTTGGGTGGAGCCACGAGCTCAGCCTCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp CACTCAGGAACACAGTCAGGCTCGCAACTGAATCATTaGCAAACTGGAGCAACAGGCCGGCAGGTTCGCGGG +
Preference number: 6 (lower is better)
Translates to: HSGTQSGSQLNH*QTGATGRQVRG
Trigger: CCCGCGAACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACTGTGTTCCTGAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CAA 90 bp TTCCAGGTGACGTGGCACGTGCCACCATTGAAACAGGGATTGGGATaGCACGTGTCCTCAGAGACACAACCCTGGGTGAGGTTGGAGGAC +
Preference number: 6 (lower is better)
Translates to: FQVTWHVPPLKQGLG*HVSSETQPWVRLED
Trigger: GTCCTCCAACCTCACCCAGGGTTGTGTCTCTGAGGACACGTGCAATCCCAATCCCTGTTTCAATGGTGGCACGTGCCACGTCACCTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS TCA 72 bp GTGGTGGCATGGCTGAGTAGCACAGCCTCCAAGCTCTaGGGGCTCACAGGTATAGCCACCACTTTCTGTAGC +
Preference number: 6 (lower is better)
Translates to: VVAWLSSTASKL*GLTGIATTFCS
Trigger: GCTACAGAAAGTGGTGGCTATACCTGTGAGCCCTCAGAGCTTGGAGGCTGTGCTACTCAGCCATGCCACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS TCA 72 bp GGCTGGCTTCACAGGGTTTGTCGAGACTCTGACATCTaGGGCCAGCAAGACCTTCCTGGCAACTGCAGTTGG +
Preference number: 6 (lower is better)
Translates to: GWLHRVCRDSDI*GQQDLPGNCSW
Trigger: CCAACTGCAGTTGCCAGGAAGGTCTTGCTGGCCTCAGATGTCAGAGTCTCGACAAACCCTGTGAAGCCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 72 bp TCCAGGGTTCCCAGGTGGAGCGTCACTTCCACCTGGTaGCAATGCCCATCATTTAAGGCTAGGTCAGGCAGT +
Preference number: 6 (lower is better)
Translates to: SRVPRWSVTSTW*QCPSFKARSGS
Trigger: ACTGCCTGACCTAGCCTTAAATGATGGGCATTGGCACCAGGTGGAAGTGACGCTCCACCTGGGAACCCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp TCCTCAGAGACACAACCCTGGGTGAGGTTGGAGGACTaGCCAGCTTCCAGTTCACTGGGCCAACTTGAGTTC +
Preference number: 6 (lower is better)
Translates to: SSETQPWVRLED*PASSSLGQLEF
Trigger: GAACTCAAGTTGGCCCAGTGAACTGGAAGCTGGCCAGTCCTCCAACCTCACCCAGGGTTGTGTCTCTGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CAA 72 bp TCACTCAGGAACACAGTCAGGCTCGCAACTGAATCATaGGCAAACTGGAGCAACAGGCCGGCAGGTTCGCGG +
Preference number: 6 (lower is better)
Translates to: SLRNTVRLATES*ANWSNRPAGSR
Trigger: CCGCGAACCTGCCGGCCTGTTGCTCCAGTTTGCCAATGATTCAGTTGCGAGCCTGACTGTGTTCCTGAGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CAA 72 bp TGGAGGACTGGCCAGCTTCCAGTTCACTGGGCCAACTaGAGTTCTCCATCGGGGAAGAGAAGAAGGGGAGGT +
Preference number: 6 (lower is better)
Translates to: WRTGQLPVHWAN*SSPSGKRRRGG
Trigger: ACCTCCCCTTCTTCTCTTCCCCGATGGAGAACTCAAGTTGGCCCAGTGAACTGGAAGCTGGCCAGTCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CAA 72 bp CAGGTGACGTGGCACGTGCCACCATTGAAACAGGGATaGGGATTGCACGTGTCCTCAGAGACACAACCCTGG +
Preference number: 6 (lower is better)
Translates to: QVTWHVPPLKQG*GLHVSSETQPW
Trigger: CCAGGGTTGTGTCTCTGAGGACACGTGCAATCCCAATCCCTGTTTCAATGGTGGCACGTGCCACGTCACCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CCA 72 bp CGGAGGAAAAATGACACGGTGAGGTTTGGGCCTAGTTaGTGGAGCAGAAAAGAGGCTGAGCTCGTGGCTCCA +
Preference number: 6 (lower is better)
Translates to: RRKNDTVRFGPS*WSRKEAELVAP
Trigger: TGGAGCCACGAGCTCAGCCTCTTTTCTGCTCCACCAACTAGGCCCAAACCTCACCGTGTCATTTTTCCTCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CAA 90 bp AAGTCATTCCAGGTGACGTGGCACGTGCCACCATTGAAACAGGGATaGGGATTGCACGTGTCCTCAGAGACACAACCCTGGGTGAGGTTG +
Preference number: 6 (lower is better)
Translates to: KSFQVTWHVPPLKQG*GLHVSSETQPWVRL
Trigger: CAACCTCACCCAGGGTTGTGTCTCTGAGGACACGTGCAATCCCAATCCCTGTTTCAATGGTGGCACGTGCCACGTCACCTGGAATGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000050372.10
ENSMUST00000147600.3
CDS CCA 72 bp TGCTACAGTGTCGCTGCAGGTTCCACCATGCAGGCATaGTTCCGACTGGCATTCATCCATATCTTCCTGACA +
Preference number: 6 (lower is better)
Translates to: CYSVAAGSTMQA*FRLAFIHIFLT
Trigger: TGTCAGGAAGATATGGATGAATGCCAGTCGGAACCATGCCTGCATGGTGGAACCTGCAGCGACACTGTAGCA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS GCA 72 bp GGTTTTCACCACTTCACAGAACTGGCCAGAGAATCCTaGACTGCAAGTACATTCAAATATGCCACTGGCCAC +
Preference number: 6 (lower is better)
Translates to: GFHHFTELARES*TASTFKYATGH
Trigger: GTGGCCAGTGGCATATTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAGTTCTGTGAAGTGGTGAAAACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10
CDS CCA 72 bp AGAGGCAGAGGTAGGGTTTTCACCACTTCACAGAACTaGCCAGAGAATCCTGCACTGCAAGTACATTCAAAT +
Preference number: 6 (lower is better)
Translates to: RGRGRVFTTSQN*PENPALQVHSN
Trigger: ATTTGAATGTACTTGCAGTGCAGGATTCTCTGGCCAGTTCTGTGAAGTGGTGAAAACCCTACCTCTGCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000050372.10