RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CRAT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026853

Ensembl transcript IDs: ENSMUST00000028207.13, ENSMUST00000102854.10, ENSMUST00000102855.8, ENSMUST00000132981.9, ENSMUST00000134120.2, ENSMUST00000142096.2, ENSMUST00000154595.2, ENSMUST00000155790.8, ENSMUST00000156702.2

Found 343 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGGCTCAAGAGTCACCAGAGTGTGGCAGCAGGGAGATGGCACCTTaGGGTGGGCTGGTGGAGGCTGGGCCTCAGATGTCCCTTTGGCTA +
Preference number: 1 (lower is better)
Translates to: GAQESPECGSREMAP*GGLVEAGPQMSLWL
Trigger: TAGCCAAAGGGACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGCCACACTCTGGTGACTCTTGAGCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 90 bp TTGGGAACCTGGGCCGTAGTCTTGTTCAGCCTCTGGACTCAGCCCTaGACATGGACTCCGGCAGGTGCTAAGGACAGGGCCTGGAAGGCA +
Preference number: 1 (lower is better)
Translates to: LGTWAVVLFSLWTQP*TWTPAGAKDRAWKA
Trigger: TGCCTTCCAGGCCCTGTCCTTAGCACCTGCCGGAGTCCATGTGCAGGGCTGAGTCCAGAGGCTGAACAAGACTACGGCCCAGGTTCCCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 90 bp ACCTGGGCCGTAGTCTTGTTCAGCCTCTGGACTCAGCCCTGCACATaGACTCCGGCAGGTGCTAAGGACAGGGCCTGGAAGGCACTTGGT +
Preference number: 1 (lower is better)
Translates to: TWAVVLFSLWTQPCT*TPAGAKDRAWKALG
Trigger: ACCAAGTGCCTTCCAGGCCCTGTCCTTAGCACCTGCCGGAGTCCATGTGCAGGGCTGAGTCCAGAGGCTGAACAAGACTACGGCCCAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 90 bp ACTGCCCGCCACCAAGCTGATGACCAGAGGCCATGCAGCACTGAGTaGGCACAGGCTGGCTTTCCTTTCCTGGCAGGTTATGTGCTACAC +
Preference number: 1 (lower is better)
Translates to: TARHQADDQRPCSTE*AQAGFPFLAGYVLH
Trigger: GTGTAGCACATAACCTGCCAGGAAAGGAAAGCCAGCCTGTGCGCACTCAGTGCTGCATGGCCTCTGGTCATCAGCTTGGTGGCGGGCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR CCA 90 bp CACCAGAGTGTGGCAGCAGGGAGATGGCACCTTGAGGTGGGCTGGTaGAGGCTGGGCCTCAGATGTCCCTTTGGCTACAAAGACTTAACC +
Preference number: 1 (lower is better)
Translates to: HQSVAAGRWHLEVGW*RLGLRCPFGYKDLT
Trigger: GGTTAAGTCTTTGTAGCCAAAGGGACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGCCACACTCTGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 90 bp TCAAGAGTCACCAGAGTGTGGCAGCAGGGAGATGGCACCTTGAGGTaGGCTGGTGGAGGCTGGGCCTCAGATGTCCCTTTGGCTACAAAG +
Preference number: 1 (lower is better)
Translates to: SRVTRVWQQGDGTLR*AGGGWASDVPLATK
Trigger: CTTTGTAGCCAAAGGGACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGCCACACTCTGGTGACTCTTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR TCA 90 bp ATTGACTGGGCTGCTAGTGTGTCCCTGCTCCATTGCCCCTCCTATTaGGTTCAGTGGAGGCCAGCTGCACCTGGCTTTGGGCTGAGGAGT +
Preference number: 1 (lower is better)
Translates to: IDWAASVSLLHCPSY*VQWRPAAPGFGLRS
Trigger: ACTCCTCAGCCCAAAGCCAGGTGCAGCTGGCCTCCACTGAACTCAATAGGAGGGGCAATGGAGCAGGGACACACTAGCAGCCCAGTCAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR TCA 90 bp TGGTGTGAGCCCATTCTTCCTCACTCACGATGGGCTGCAGTGCCTTaGGGTAATAGTCCAGGGATTGCTGAAGTGGGGGCACAGGCAGCC +
Preference number: 1 (lower is better)
Translates to: WCEPILPHSRWAAVP*GNSPGIAEVGAQAA
Trigger: GGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR GCA 90 bp CTCTGGTACACTCTGGTACATAGCTATGCCGCTATGTCTGGTCTGTaGTACTGTCAAAAACCCTCCCTCCCTGCCAGCCTGCCTCCGGCC +
Preference number: 1 (lower is better)
Translates to: LWYTLVHSYAAMSGL*YCQKPSLPASLPPA
Trigger: GGCCGGAGGCAGGCTGGCAGGGAGGGAGGGTTTTTGACAGTAGCACAGACCAGACATAGCGGCATAGCTATGTACCAGAGTGTACCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR CCA 90 bp AGTCACCAGAGTGTGGCAGCAGGGAGATGGCACCTTGAGGTGGGCTaGTGGAGGCTGGGCCTCAGATGTCCCTTTGGCTACAAAGACTTA +
Preference number: 1 (lower is better)
Translates to: SHQSVAAGRWHLEVG*WRLGLRCPFGYKDL
Trigger: TAAGTCTTTGTAGCCAAAGGGACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGCCACACTCTGGTGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 90 bp GCTCCATTGCCCCTCCTATTGAGTTCAGTGGAGGCCAGCTGCACCTaGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGCACT +
Preference number: 1 (lower is better)
Translates to: APLPLLLSSVEASCT*LWAEECLPPQIHST
Trigger: AGTGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCAGCTGGCCTCCACTGAACTCAATAGGAGGGGCAATGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 90 bp GTTCCCCTACGCCCCCTGAGGTCTGAAACTCATCCACCAGTTGCTTaGTGTGAGCCCATTCTTCCTCACTCACGATGGGCTGCAGTGCCT +
Preference number: 1 (lower is better)
Translates to: VPLRPLRSETHPPVA*CEPILPHSRWAAVP
Trigger: AGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGGTGGATGAGTTTCAGACCTCAGGGGGCGTAGGGGAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR GCA 90 bp GACAAGAGATTGGCCAGGCTGAGGAAAGGAACTCTTCCCGGCTCCTaGTGTGAGAAGGGATGGGCTGGACTGGCTCTCTTCTCCATGGTT +
Preference number: 1 (lower is better)
Translates to: DKRLARLRKGTLPGS*CEKGWAGLALFSMV
Trigger: AACCATGGAGAAGAGAGCCAGTCCAGCCCATCCCTTCTCACAGCAGGAGCCGGGAAGAGTTCCTTTCCTCAGCCTGGCCAATCTCTTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 90 bp GGCCGGGCACACGGCAAGAAGACAGGATCTGATAATACTGGTTCATaGACAGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCAT +
Preference number: 1 (lower is better)
Translates to: GRAHGKKTGSDNTGS*TAAVLPGTQLAASH
Trigger: ATGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTGCCCGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR TCA 90 bp GGGATGGGCTGGACTGGCTCTCTTCTCCATGGTTCATGGAGTGGATaGTACATTGGGAACCTGGGCCGTAGTCTTGTTCAGCCTCTGGAC +
Preference number: 1 (lower is better)
Translates to: GMGWTGSLLHGSWSG*YIGNLGRSLVQPLD
Trigger: GTCCAGAGGCTGAACAAGACTACGGCCCAGGTTCCCAATGTATCATCCACTCCATGAACCATGGAGAAGAGAGCCAGTCCAGCCCATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR TCA 90 bp ACAGATTTTGGCCTGGCTGTGGAGATGACAAGAGATTGGCCAGGCTaGGGAAAGGAACTCTTCCCGGCTCCTGCTGTGAGAAGGGATGGG +
Preference number: 1 (lower is better)
Translates to: TDFGLAVEMTRDWPG*GKELFPAPAVRRDG
Trigger: CCCATCCCTTCTCACAGCAGGAGCCGGGAAGAGTTCCTTTCCTCAGCCTGGCCAATCTCTTGTCATCTCCACAGCCAGGCCAAAATCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 90 bp CAGCCTGAGGATGTTGTCTCTGGGAGCTTGCTGGCCCACACTGCCTaGTTGGATACAAGCTCCCTGAACCAGAGACAGGTAGAAAATGGC +
Preference number: 1 (lower is better)
Translates to: QPEDVVSGSLLAHTA*LDTSSLNQRQVENG
Trigger: GCCATTTTCTACCTGTCTCTGGTTCAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCCAGAGACAACATCCTCAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 90 bp ATAGTCCAGGGATTGCTGAAGTGGGGGCACAGGCAGCCTTGGCAGTaGATCTTGGTGGGCCTTGAAGCGACCAGAAACCTTCATCAAGGA +
Preference number: 1 (lower is better)
Translates to: IVQGLLKWGHRQPWQ*ILVGLEATRNLHQG
Trigger: TCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGACTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR GCA 90 bp TTGCTTGGTGTGAGCCCATTCTTCCTCACTCACGATGGGCTGCAGTaGCTTGAGGTAATAGTCCAGGGATTGCTGAAGTGGGGGCACAGG +
Preference number: 1 (lower is better)
Translates to: LLGVSPFFLTHDGLQ*LEVIVQGLLKWGHR
Trigger: CCTGTGCCCCCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR CCA 90 bp AGGCTGAGGAAAGGAACTCTTCCCGGCTCCTGCTGTGAGAAGGGATaGGCTGGACTGGCTCTCTTCTCCATGGTTCATGGAGTGGATGAT +
Preference number: 1 (lower is better)
Translates to: RLRKGTLPGSCCEKG*AGLALFSMVHGVDD
Trigger: ATCATCCACTCCATGAACCATGGAGAAGAGAGCCAGTCCAGCCCATCCCTTCTCACAGCAGGAGCCGGGAAGAGTTCCTTTCCTCAGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 90 bp GAGGTAATAGTCCAGGGATTGCTGAAGTGGGGGCACAGGCAGCCTTaGCAGTGCATCTTGGTGGGCCTTGAAGCGACCAGAAACCTTCAT +
Preference number: 1 (lower is better)
Translates to: EVIVQGLLKWGHRQP*QCILVGLEATRNLH
Trigger: ATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGACTATTACCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR CCA 90 bp GCTCTCTTCTCCATGGTTCATGGAGTGGATGATACATTGGGAACCTaGGCCGTAGTCTTGTTCAGCCTCTGGACTCAGCCCTGCACATGG +
Preference number: 1 (lower is better)
Translates to: ALFSMVHGVDDTLGT*AVVLFSLWTQPCTW
Trigger: CCATGTGCAGGGCTGAGTCCAGAGGCTGAACAAGACTACGGCCCAGGTTCCCAATGTATCATCCACTCCATGAACCATGGAGAAGAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 90 bp TGCCTGCTTGGATACAAGCTCCCTGAACCAGAGACAGGTAGAAAATaGCAGGGCCAGACATCTGCCCTGCTTGCCCCTCAGCTGAATCAA +
Preference number: 1 (lower is better)
Translates to: CLLGYKLPEPETGRK*QGQTSALLAPQLNQ
Trigger: TTGATTCAGCTGAGGGGCAAGCAGGGCAGATGTCTGGCCCTGCCATTTTCTACCTGTCTCTGGTTCAGGGAGCTTGTATCCAAGCAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 90 bp CCTCCCACCGCTGGTCCTTGGGCATTTACCAATGAAGACAGATTTTaGCCTGGCTGTGGAGATGACAAGAGATTGGCCAGGCTGAGGAAA +
Preference number: 1 (lower is better)
Translates to: PPTAGPWAFTNEDRF*PGCGDDKRLARLRK
Trigger: TTTCCTCAGCCTGGCCAATCTCTTGTCATCTCCACAGCCAGGCCAAAATCTGTCTTCATTGGTAAATGCCCAAGGACCAGCGGTGGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 90 bp CTGGGGAGGTCTGCCCTTCACAAGGCTTCCATATCCAACTCCACATaGATTGTCTGCCTCAGTGAGGAGACTTCTGCCTTAGAAGAACTG +
Preference number: 1 (lower is better)
Translates to: LGRSALHKASISNST*IVCLSEETSALEEL
Trigger: CAGTTCTTCTAAGGCAGAAGTCTCCTCACTGAGGCAGACAATGCATGTGGAGTTGGATATGGAAGCCTTGTGAAGGGCAGACCTCCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR TCA 90 bp TCACAAGGCTTCCATATCCAACTCCACATGCATTGTCTGCCTCAGTaGGGAGACTTCTGCCTTAGAAGAACTGCCCGCCACCAAGCTGAT +
Preference number: 1 (lower is better)
Translates to: SQGFHIQLHMHCLPQ*GDFCLRRTARHQAD
Trigger: ATCAGCTTGGTGGCGGGCAGTTCTTCTAAGGCAGAAGTCTCCTCACTGAGGCAGACAATGCATGTGGAGTTGGATATGGAAGCCTTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR CAA 90 bp TGGGGCTCAAGAGTCACCAGAGTGTGGCAGCAGGGAGATGGCACCTaGAGGTGGGCTGGTGGAGGCTGGGCCTCAGATGTCCCTTTGGCT +
Preference number: 2 (lower is better)
Translates to: WGSRVTRVWQQGDGT*RWAGGGWASDVPLA
Trigger: AGCCAAAGGGACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGCCACACTCTGGTGACTCTTGAGCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp AGAGTGTGGCAGCAGGGAGATGGCACCTTGAGGTGGGCTGGTGGAGGCTGGGCCTGCTGTGAGAAGGGATaGGCTGGACTGGCTCTCTTC +
Preference number: 2 (lower is better)
Translates to: RVWQQGDGTLRWAGGGWACCEKG*AGLALF
Trigger: GAAGAGAGCCAGTCCAGCCCATCCCTTCTCACAGCA...GGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGCCACACTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR GCA 90 bp CAGGCCCTGCCTCAGGTGACCACAGGTCAGTCAGGTCACGGAGCACTTCACAGGCTGGCCCACACTGCCTaGTTGGATACAAGCTCCCTG +
Preference number: 2 (lower is better)
Translates to: QALPQVTTGQSGHGALHRLAHTA*LDTSSL
Trigger: CAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAG...CCTGTGAAGTGCTCCGTGACCTGACTGACCTGTGGTCACCTGAGGCAGGGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp GGTGCCAGCCTCCCGGCCCCACATTCCAAGCACATATGTACCCAGGGGCTTCCGGTGTCCATCCCAAAGTaGGTTTGGCTGTGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: GASLPAPHSKHICTQGLPVSIPK*VWLWKW
Trigger: CCACTTCCACAGCCAAACCCACTTTGGGATGGACAC...CGGAAGCCCCTGGGTACATATGTGCTTGGAATGTGGGGCCGGGAGGCTGGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp GCAGCAGGGAGATGGCACCTTGAGGTGGGCTGGTGGAGGCTGGGCCTCAGATGTGTGTCCATCCCAAAGTaGGTTTGGCTGTGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: AAGRWHLEVGWWRLGLRCVSIPK*VWLWKW
Trigger: CCACTTCCACAGCCAAACCCACTTTGGGATGGACAC...ACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp GGGAGCTTGCTGGCCCACACTGCCTGCTTGGATACAAGCTCCCTGAACCAGAGACTTGAGGTGGGCTGGTaGAGGCTGGGCCTCAGATGT +
Preference number: 2 (lower is better)
Translates to: GSLLAHTACLDTSSLNQRLEVGW*RLGLRC
Trigger: ACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAG...TCTCTGGTTCAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CAA 90 bp CAGGGATTGCTGAAGTGGGGGCACAGGCAGCCTTGGCAGTGCATCTaGGTGGGCCTTGAAGCGACCAGAAACCTTCATCAAGGAGGAGGG +
Preference number: 2 (lower is better)
Translates to: QGLLKWGHRQPWQCI*VGLEATRNLHQGGG
Trigger: CCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR TCA 90 bp ATACTGGTTCATGCACAGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCGGAGATAGGCTGTCTTaGGCCACCACTCGGACAGCC +
Preference number: 2 (lower is better)
Translates to: ILVHAQRLSSQELNWQRLGDRLS*ATTRTA
Trigger: GGCTGTCCGAGTGGTGGCTCAAGACAGCCTATCTCC...GAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTGCATGAACCAGTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR CCA 90 bp GCAATAAGTCTGGGGCTCAAGAGTCACCAGAGTGTGGCAGCAGGGAGATGGCACGGCCTGGAAGGCACTTaGTGTGGACGTTGGGGCCTT +
Preference number: 2 (lower is better)
Translates to: AISLGLKSHQSVAAGRWHGLEGT*CGRWGL
Trigger: AAGGCCCCAACGTCCACACCAAGTGCCTTCCAGGCC...GTGCCATCTCCCTGCTGCCACACTCTGGTGACTCTTGAGCCCCAGACTTATTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR GCA 90 bp GCAGCAGGGAGATGGCACCTTGAGGTGGGCTGGTGGAGGCTGGGCCTCAGATGTGGCCTTGCTAGAGAATaGTTTTCTGGCTCAAACTGG +
Preference number: 2 (lower is better)
Translates to: AAGRWHLEVGWWRLGLRCGLARE*FSGSNW
Trigger: CCAGTTTGAGCCAGAAAAGCATTCTCTAGCAAGGCC...ACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp ACAGGTAGAAAATGGCAGGGCCAGACATCTGCCCTGCTTGCCCCTCAGCTGAATCTTGAGGTGGGCTGGTaGAGGCTGGGCCTCAGATGT +
Preference number: 2 (lower is better)
Translates to: TGRKWQGQTSALLAPQLNLEVGW*RLGLRC
Trigger: ACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAG...ATTCAGCTGAGGGGCAAGCAGGGCAGATGTCTGGCCCTGCCATTTTCTACCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp TGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGCACTGCAAGAGTCACCAGAGTGTaGCAGCAGGGAGATGGCACC +
Preference number: 2 (lower is better)
Translates to: CTWLWAEECLPPQIHSTARVTRV*QQGDGT
Trigger: GGTGCCATCTCCCTGCTGCCACACTCTGGTGACTCT...TGCAGTGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CAA 90 bp GCCTTAGTTGTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCTaGCTGGCCCACACTGCCTGCTTGGATACAAGCTCCCTGAACCAG +
Preference number: 2 (lower is better)
Translates to: ALVVTAQPEDVVSGS*LAHTACLDTSSLNQ
Trigger: CTGGTTCAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGACAACTAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR TCA 90 bp CACAGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCATTGTCAATCATGTTCCCCTACGCCCCCTaGGGTCTGAAACTCATCCAC +
Preference number: 2 (lower is better)
Translates to: HSGCPPRNSTGSVSLSIMFPYAP*GLKLIH
Trigger: GTGGATGAGTTTCAGACCTCAGGGGGCGTAGGGGAA...CATGATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR TCA 90 bp CTTGGGGCCGGGCACACGGCAAGAAGACAGGATCTGATAATACTGGTTCATGCACTGGGCTGGAGTAGATaGCCACAGGCTGGCGGAACT +
Preference number: 2 (lower is better)
Translates to: LGAGHTARRQDLIILVHALGWSR*PQAGGT
Trigger: AGTTCCGCCAGCCTGTGGTCATCTACTCCAGCCCAG...TGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTGCCCGGCCCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR GCA 90 bp CAGAGTCTCAAGCCCTTCCCTGCCTTACAGATGACTAATGTACTCTTGGGAGCCGCAGGGCCAGACATCTaGCCTGCTTGCCCCTCAGCT +
Preference number: 2 (lower is better)
Translates to: QSLKPFPALQMTNVLLGAAGPDI*PACPSA
Trigger: AGCTGAGGGGCAAGCAGGGCAGATGTCTGGCCCTGC...GGCTCCCAAGAGTACATTAGTCATCTGTAAGGCAGGGAAGGGCTTGAGACTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp TCTGGGAGCTTGCTGGCCCACACTGCCTGCTTGGATACAAGCTCCCTGAACCAGATCCCAAAGTGGGTTTaGCTGTGGAAGTGGCAGGTC +
Preference number: 2 (lower is better)
Translates to: SGSLLAHTACLDTSSLNQIPKWV*LWKWQV
Trigger: GACCTGCCACTTCCACAGCCAAACCCACTTTGGGAT...CTGGTTCAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp GGTGCCAGCCTCCCGGCCCCACATTCCAAGCACATATGTACCCAGGGGCTTCCGAATGAAGACAGATTTTaGCCTGGCTGTGGAGATGAC +
Preference number: 2 (lower is better)
Translates to: GASLPAPHSKHICTQGLPNEDRF*PGCGDD
Trigger: GTCATCTCCACAGCCAGGCCAAAATCTGTCTTCATT...CGGAAGCCCCTGGGTACATATGTGCTTGGAATGTGGGGCCGGGAGGCTGGCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp CTTGGGGCCGGGCACACGGCAAGAAGACAGGATCTGATAATACTGGTTCATGCACAGGGATTGCTGAAGTaGGGGCACAGGCAGCCTTGG +
Preference number: 2 (lower is better)
Translates to: LGAGHTARRQDLIILVHAQGLLK*GHRQPW
Trigger: CCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTG...TGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTGCCCGGCCCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR CAA 90 bp ATGGTTCATGGAGTGGATGATACATTGGGAACCTGGGCCGTAGTCTaGTTCAGCCTCTGGACTCAGCCCTGCACATGGACTCCGGCAGGT +
Preference number: 2 (lower is better)
Translates to: MVHGVDDTLGTWAVV*FSLWTQPCTWTPAG
Trigger: ACCTGCCGGAGTCCATGTGCAGGGCTGAGTCCAGAGGCTGAACAAGACTACGGCCCAGGTTCCCAATGTATCATCCACTCCATGAACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CAA 90 bp TGGTGGGCCTTGAAGCGACCAGAAACCTTCATCAAGGAGGAGGGCTaGAGGAGGCCCAGGGGTTTTACCTGGTCTCCTTTATCCACCTTG +
Preference number: 2 (lower is better)
Translates to: WWALKRPETFIKEEG*RRPRGFTWSPLSTL
Trigger: CAAGGTGGATAAAGGAGACCAGGTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR TCA 90 bp CAGGTCTTTTCTGTGGCCTGGTCAGAACTAGGATACATCCTGGGGAAATCTGGTAGGCCCTGCCTCAGGTaGCCACAGGTCAGTCAGGTC +
Preference number: 2 (lower is better)
Translates to: QVFSVAWSELGYILGKSGRPCLR*PQVSQV
Trigger: GACCTGACTGACCTGTGGTCACCTGAGGCAGGGCCT...ACCAGATTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR GCA 90 bp AAGGTTGGGGACCTGATAGTGACAGCTCCTCCAGCCCACTTCCAGTCAGCATCTGGGCTGAGGAGTGTTTaGCACCCCAGATCCATAGCA +
Preference number: 2 (lower is better)
Translates to: KVGDLIVTAPPAHFQSASGLRSV*HPRSIA
Trigger: TGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCC...AGATGCTGACTGGAAGTGGGCTGGAGGAGCTGTCACTATCAGGTCCCCAACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR GCA 90 bp TTGCTTGGTGTGAGCCCATTCTTCCTCACTCACGATGGGCTGCAGTGCCTTGAGAGGCAGCCTTGGCAGTaGATCTTGGTGGGCCTTGAA +
Preference number: 2 (lower is better)
Translates to: LLGVSPFFLTHDGLQCLERQPWQ*ILVGLE
Trigger: TTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCT...CTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR CCA 90 bp GAGGTAGTTTCATCCTATGTTGCAGGCCCTGCCTCAGGTGACCACAGGTCAGTCGTCTTGTTCAGCCTCTaGACTCAGCCCTGCACATGG +
Preference number: 2 (lower is better)
Translates to: EVVSSYVAGPASGDHRSVVLFSL*TQPCTW
Trigger: CCATGTGCAGGGCTGAGTCCAGAGGCTGAACAAGAC...GACTGACCTGTGGTCACCTGAGGCAGGGCCTGCAACATAGGATGAAACTACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp GAGGTAGTTTCATCCTATGTTGCAGGCCCTGCCTCAGGTGACCACAGGTCAGTCTGCTGTGAGAAGGGATaGGCTGGACTGGCTCTCTTC +
Preference number: 2 (lower is better)
Translates to: EVVSSYVAGPASGDHRSVCCEKG*AGLALF
Trigger: GAAGAGAGCCAGTCCAGCCCATCCCTTCTCACAGCA...GACTGACCTGTGGTCACCTGAGGCAGGGCCTGCAACATAGGATGAAACTACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp ATGCACAGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCATTGTCAATCCTTGGCAGTGCATCTTaGTGGGCCTTGAAGCGACCA +
Preference number: 2 (lower is better)
Translates to: MHSGCPPRNSTGSVSLSILGSAS*WALKRP
Trigger: TGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAG...GATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR TCA 90 bp CACACGGCAAGAAGACAGGATCTGATAATACTGGTTCATGCACAGCGGCTGTCCTCAAGGAGGAGGGCTTaGGGAGGCCCAGGGGTTTTA +
Preference number: 2 (lower is better)
Translates to: HTARRQDLIILVHAQRLSSRRRA*GGPGVL
Trigger: TAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGA...GGACAGCCGCTGTGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR TCA 90 bp AGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCATTGTCAATCATGGACCATCTTGGTGGGCCTTaGAGCGACCAGAAACCTTCA +
Preference number: 2 (lower is better)
Translates to: SGCPPRNSTGSVSLSIMDHLGGP*SDQKPS
Trigger: TGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATG...GTCCATGATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR TCA 90 bp GCAAGAAGACAGGATCTGATAATACTGGTTCATGCACAGCGGCTGTCCTCCCAGACGCCCCCTGAGGTCTaGAACTCATCCACCAGTTGC +
Preference number: 2 (lower is better)
Translates to: ARRQDLIILVHAQRLSSQTPPEV*NSSTSC
Trigger: GCAACTGGTGGATGAGTTTCAGACCTCAGGGGGCGT...CTGGGAGGACAGCCGCTGTGCATGAACCAGTATTATCAGATCCTGTCTTCTTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR CCA 90 bp TGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGCACTGCACAAGGAAGTGAGCCATaGCAAGTGTCCATCCCAAAG +
Preference number: 2 (lower is better)
Translates to: CTWLWAEECLPPQIHSTAQGSEP*QVSIPK
Trigger: CTTTGGGATGGACACTTGCCATGGCTCACTTCCTTG...TGCAGTGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp AAGGTTGGGGACCTGATAGTGACAGCTCCTCCAGCCCACTTCCAGTCAGCATCTGAGACAGGTAGAAAATaGCAGGGCCAGACATCTGCC +
Preference number: 2 (lower is better)
Translates to: KVGDLIVTAPPAHFQSASETGRK*QGQTSA
Trigger: GGCAGATGTCTGGCCCTGCCATTTTCTACCTGTCTC...AGATGCTGACTGGAAGTGGGCTGGAGGAGCTGTCACTATCAGGTCCCCAACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp CTTGGGGCCGGGCACACGGCAAGAAGACAGGATCTGATAATACTGGTTCATGCAGGCAGTGCATCTTGGTaGGCCTTGAAGCGACCAGAA +
Preference number: 2 (lower is better)
Translates to: LGAGHTARRQDLIILVHAGSASW*ALKRPE
Trigger: TTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCC...TGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTGCCCGGCCCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR TCA 90 bp ATGCACAGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCATTGTCAATCCCAATACACCCTCGATaGGTTTGGCAGCAAACCGAA +
Preference number: 2 (lower is better)
Translates to: MHSGCPPRNSTGSVSLSIPIHPR*VWQQTE
Trigger: TTCGGTTTGCTGCCAAACTCATCGAGGGTGTATTGG...GATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR GCA 90 bp ATAATACTGGTTCATGCACAGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCACGATGGGCTGCAGTaGCTTGAGGTAATAGTCCAG +
Preference number: 2 (lower is better)
Translates to: IILVHAQRLSSQELNWQRHDGLQ*LEVIVQ
Trigger: CTGGACTATTACCTCAAGGCACTGCAGCCCATCGTG...ACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTGCATGAACCAGTATTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR CCA 90 bp CGCACAGGCTGGCTTTCCTTTCCTGGCAGGTTATGTGCTACACCCTCTGGGTGGAATGAAGACAGATTTTaGCCTGGCTGTGGAGATGAC +
Preference number: 2 (lower is better)
Translates to: RTGWLSFPGRLCATPSGWNEDRF*PGCGDD
Trigger: GTCATCTCCACAGCCAGGCCAAAATCTGTCTTCATT...CCACCCAGAGGGTGTAGCACATAACCTGCCAGGAAAGGAAAGCCAGCCTGTGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp TGTGGTGTGAGCCTGGGTGAGCTGAGCTTCAGAGTCTCAAGCCCTTCCCTGCCTCCTCAGATGTCCCTTTaGCTACAAAGACTTAACCCT +
Preference number: 2 (lower is better)
Translates to: CGVSLGELSFRVSSPSLPPQMSL*LQRLNP
Trigger: AGGGTTAAGTCTTTGTAGCCAAAGGGACATCTGAGG...AGGCAGGGAAGGGCTTGAGACTCTGAAGCTCAGCTCACCCAGGCTCACACCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp ATGCACAGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCATTGTCAATCCATCCACCAGTTGCTTaGTGTGAGCCCATTCTTCCT +
Preference number: 2 (lower is better)
Translates to: MHSGCPPRNSTGSVSLSIHPPVA*CEPILP
Trigger: AGGAAGAATGGGCTCACACCAAGCAACTGGTGGATG...GATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR TCA 90 bp AGAAGACAGGATCTGATAATACTGGTTCATGCACAGCGGCTGTCCTCCCAGGAATGGGCTGCAGTGCCTTaGGGTAATAGTCCAGGGATT +
Preference number: 2 (lower is better)
Translates to: RRQDLIILVHAQRLSSQEWAAVP*GNSPGI
Trigger: AATCCCTGGACTATTACCTCAAGGCACTGCAGCCCA...TTCCTGGGAGGACAGCCGCTGTGCATGAACCAGTATTATCAGATCCTGTCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR GCA 90 bp GGAGTTCAGGTCTTTTCTGTGGCCTGGTCAGAACTAGGATACATCCTGGGGAAACTGCTAGTGTGTCCCTaGTCCATTGCCCCTCCTATT +
Preference number: 2 (lower is better)
Translates to: GVQVFSVAWSELGYILGKLLVCP*SIAPPI
Trigger: AATAGGAGGGGCAATGGAGCAGGGACACACTAGCAG...TTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTGAACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp GCAAGAAGACAGGATCTGATAATACTGGTTCATGCACAGCGGCTGTCCTCCCAGCCCAGGGGTTTTACCTaGTCTCCTTTATCCACCTTG +
Preference number: 2 (lower is better)
Translates to: ARRQDLIILVHAQRLSSQPRGFT*SPLSTL
Trigger: CAAGGTGGATAAAGGAGACCAGGTAAAACCCCTGGG...CTGGGAGGACAGCCGCTGTGCATGAACCAGTATTATCAGATCCTGTCTTCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR CAA 90 bp CCTCCCAGGAACTCAACTGGCAGCGTCTCATTGTCAATCATGGACTaGAAATCCAATACACCCTCGATGAGTTTGGCAGCAAACCGAAGC +
Preference number: 2 (lower is better)
Translates to: PPRNSTGSVSLSIMD*KSNTPSMSLAANRS
Trigger: GCTTCGGTTTGCTGCCAAACTCATCGAGGGTGTATTGGATTTCAAGTCCATGATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR CAA 90 bp ATGCACAGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCATaGTCAATCATGGACTTGAAATCCAATACACCCTCGATGAGTTTG +
Preference number: 2 (lower is better)
Translates to: MHSGCPPRNSTGSVS*SIMDLKSNTPSMSL
Trigger: CAAACTCATCGAGGGTGTATTGGATTTCAAGTCCATGATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR GCA 90 bp CAGGTCTTTTCTGTGGCCTGGTCAGAACTAGGATACATCCTGGGGAAATCTGGTTTTCTGTATACTTGCTaGCCTGGGATGGCTGAGGGA +
Preference number: 2 (lower is better)
Translates to: QVFSVAWSELGYILGKSGFLYTC*PGMAEG
Trigger: TCCCTCAGCCATCCCAGGGCAGCAAGTATACAGAAA...ACCAGATTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp ATGGTTCATGGAGTGGATGATACATTGGGAACCTGGGCCGTAGTCTTGTTCAGCCAAGGAAGTGAGCCATaGCAAGTGTCCATCCCAAAG +
Preference number: 2 (lower is better)
Translates to: MVHGVDDTLGTWAVVLFSQGSEP*QVSIPK
Trigger: CTTTGGGATGGACACTTGCCATGGCTCACTTCCTTG...GCTGAACAAGACTACGGCCCAGGTTCCCAATGTATCATCCACTCCATGAACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp ATGGAAGCAATAAGTCTGGGGCTCAAGAGTCACCAGAGTGTGGCAGCAGGGAGACCTCAGATGTCCCTTTaGCTACAAAGACTTAACCCT +
Preference number: 2 (lower is better)
Translates to: MEAISLGLKSHQSVAAGRPQMSL*LQRLNP
Trigger: AGGGTTAAGTCTTTGTAGCCAAAGGGACATCTGAGG...TCTCCCTGCTGCCACACTCTGGTGACTCTTGAGCCCCAGACTTATTGCTTCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR TCA 90 bp CAGGTCTTTTCTGTGGCCTGGTCAGAACTAGGATACATCCTGGGGAAATCTGGTTCCCTGCCTTACAGATaGCTAATGTACTCTTGGGAG +
Preference number: 2 (lower is better)
Translates to: QVFSVAWSELGYILGKSGSLPYR*LMYSWE
Trigger: CTCCCAAGAGTACATTAGTCATCTGTAAGGCAGGGA...ACCAGATTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp CTGGTCCTTGGGCATTTACCAATGAAGACAGATTTTGGCCTGGCTGTGGAGATGTGGCTCTCTTCTCCATaGTTCATGGAGTGGATGATA +
Preference number: 2 (lower is better)
Translates to: LVLGHLPMKTDFGLAVEMWLSSP*FMEWMI
Trigger: TATCATCCACTCCATGAACCATGGAGAAGAGAGCCA...CATCTCCACAGCCAGGCCAAAATCTGTCTTCATTGGTAAATGCCCAAGGACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CCA 90 bp TGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGCACTGCACCTTTATTGATCACCTaGCATAATCACATTATACCA +
Preference number: 2 (lower is better)
Translates to: CTWLWAEECLPPQIHSTAPLLIT*HNHIIP
Trigger: TGGTATAATGTGATTATGCCAGGTGATCAATAAAGG...TGCAGTGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 72 bp GGGCTCAAGAGTCACCAGAGTGTGGCAGCAGGGAGATaGCACCTTGAGGTGGGCTGGTGGAGGCTGGGCCTC +
Preference number: 3 (lower is better)
Translates to: GLKSHQSVAAGR*HLEVGWWRLGL
Trigger: GAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGCCACACTCTGGTGACTCTTGAGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp TGTGGTGTGAGCCTGGGTGAGCTGAGCTTCAGAGTCTCAAGCCCTTCCCTGCCTGGGCCTGGAAGGCACTaGGTGTGGACGTTGGGGCCT +
Preference number: 3 (lower is better)
Translates to: CGVSLGELSFRVSSPSLPGPGRH*VWTLGP
Trigger: AGGCCCCAACGTCCACACCAAGTGCCTTCCAGGCCC...AGGCAGGGAAGGGCTTGAGACTCTGAAGCTCAGCTCACCCAGGCTCACACCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp AGGCTGAGGAAAGGAACTCTTCCCGGCTCCTGCTGTGAGAAGGGATGGGCTGGAGGGCCTGGAAGGCACTaGGTGTGGACGTTGGGGCCT +
Preference number: 3 (lower is better)
Translates to: RLRKGTLPGSCCEKGWAGGPGRH*VWTLGP
Trigger: AGGCCCCAACGTCCACACCAAGTGCCTTCCAGGCCC...TCCAGCCCATCCCTTCTCACAGCAGGAGCCGGGAAGAGTTCCTTTCCTCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 72 bp TGGGCCGTAGTCTTGTTCAGCCTCTGGACTCAGCCCTaGACATGGACTCCGGCAGGTGCTAAGGACAGGGCC +
Preference number: 3 (lower is better)
Translates to: WAVVLFSLWTQP*TWTPAGAKDRA
Trigger: GGCCCTGTCCTTAGCACCTGCCGGAGTCCATGTGCAGGGCTGAGTCCAGAGGCTGAACAAGACTACGGCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp AGGCCAGCTGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGTTGTCTCTGGGAGCTaGCTGGCCCACACTGCCTGC +
Preference number: 3 (lower is better)
Translates to: RPAAPGFGLRSVCHPRSIVVSGS*LAHTAC
Trigger: GCAGGCAGTGTGGGCCAGCAAGCTCCCAGAGACAAC...TATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCAGCTGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp CCAGTTGCTTGGTGTGAGCCCATTCTTCCTCACTCACGATGGGCTGCAGTGCCTGGGGCACAGGCAGCCTaGGCAGTGCATCTTGGTGGG +
Preference number: 3 (lower is better)
Translates to: PVAWCEPILPHSRWAAVPGAQAA*AVHLGG
Trigger: CCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCC...AGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR GCA 72 bp CACAGGTCAGTCAGGTCACGGAGCACTTCACAGGGGTaGCAGCCTCCCGGCCCCACATTCCAAGCACATATG +
Preference number: 3 (lower is better)
Translates to: HRSVRSRSTSQG*QPPGPTFQAHM
Trigger: CATATGTGCTTGGAATGTGGGGCCGGGAGGCTGGCACCCCTGTGAAGTGCTCCGTGACCTGACTGACCTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 72 bp TGCACATGGACTCCGGCAGGTGCTAAGGACAGGGCCTaGAAGGCACTTGGTGTGGACGTTGGGGCCTTGCTA +
Preference number: 3 (lower is better)
Translates to: CTWTPAGAKDRA*KALGVDVGALL
Trigger: TAGCAAGGCCCCAACGTCCACACCAAGTGCCTTCCAGGCCCTGTCCTTAGCACCTGCCGGAGTCCATGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 72 bp GTGGCAGCAGGGAGATGGCACCTTGAGGTGGGCTGGTaGAGGCTGGGCCTCAGATGTCCCTTTGGCTACAAA +
Preference number: 3 (lower is better)
Translates to: VAAGRWHLEVGW*RLGLRCPFGYK
Trigger: TTTGTAGCCAAAGGGACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 72 bp GTCCAGGGATTGCTGAAGTGGGGGCACAGGCAGCCTTaGCAGTGCATCTTGGTGGGCCTTGAAGCGACCAGA +
Preference number: 3 (lower is better)
Translates to: VQGLLKWGHRQP*QCILVGLEATR
Trigger: TCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR GCA 72 bp TTGGCCAGGCTGAGGAAAGGAACTCTTCCCGGCTCCTaGTGTGAGAAGGGATGGGCTGGACTGGCTCTCTTC +
Preference number: 3 (lower is better)
Translates to: LARLRKGTLPGS*CEKGWAGLALF
Trigger: GAAGAGAGCCAGTCCAGCCCATCCCTTCTCACAGCAGGAGCCGGGAAGAGTTCCTTTCCTCAGCCTGGCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 72 bp ACCACTCGGACAGCCAGTTCTCCATTTTCTTGGCCCTaGGCTCCAGTCCCTTCTGTAGGCGTTCCCCTACGC +
Preference number: 3 (lower is better)
Translates to: TTRTASSPFSWP*APVPSVGVPLR
Trigger: GCGTAGGGGAACGCCTACAGAAGGGACTGGAGCGCAGGGCCAAGAAAATGGAGAACTGGCTGTCCGAGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR CCA 72 bp GTAGTCTTGTTCAGCCTCTGGACTCAGCCCTGCACATaGACTCCGGCAGGTGCTAAGGACAGGGCCTGGAAG +
Preference number: 3 (lower is better)
Translates to: VVLFSLWTQPCT*TPAGAKDRAWK
Trigger: CTTCCAGGCCCTGTCCTTAGCACCTGCCGGAGTCCATGTGCAGGGCTGAGTCCAGAGGCTGAACAAGACTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp AGCGGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCATTGTCAATCATGGACCCTTGGCAGTGCATCTaGGTGGGCCTTGAAGCGACC +
Preference number: 3 (lower is better)
Translates to: SGCPPRNSTGSVSLSIMDPWQCI*VGLEAT
Trigger: GGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGG...GTCCATGATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR TCA 72 bp GGCCTGGCTGTGGAGATGACAAGAGATTGGCCAGGCTaGGGAAAGGAACTCTTCCCGGCTCCTGCTGTGAGA +
Preference number: 3 (lower is better)
Translates to: GLAVEMTRDWPG*GKELFPAPAVR
Trigger: TCTCACAGCAGGAGCCGGGAAGAGTTCCTTTCCTCAGCCTGGCCAATCTCTTGTCATCTCCACAGCCAGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR TCA 72 bp GCACAGGCAGCCTTGGCAGTGCATCTTGGTGGGCCTTaGAGCGACCAGAAACCTTCATCAAGGAGGAGGGCT +
Preference number: 3 (lower is better)
Translates to: AQAALAVHLGGP*SDQKPSSRRRA
Trigger: AGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR GCA 72 bp TCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCTTaGTGGCCCACACTGCCTGCTTGGATACAAGCTCCC +
Preference number: 3 (lower is better)
Translates to: SQLSLRMLSLGA*WPTLPAWIQAP
Trigger: GGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 72 bp GGATTGCTGAAGTGGGGGCACAGGCAGCCTTGGCAGTaGATCTTGGTGGGCCTTGAAGCGACCAGAAACCTT +
Preference number: 3 (lower is better)
Translates to: GLLKWGHRQPWQ*ILVGLEATRNL
Trigger: AAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR CCA 72 bp CAAGGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTaGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGG +
Preference number: 3 (lower is better)
Translates to: QGSEPWQVSIPK*VWLWKWQVWAW
Trigger: CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
3UTR CCA 72 bp AGTGGGGGCACAGGCAGCCTTGGCAGTGCATCTTGGTaGGCCTTGAAGCGACCAGAAACCTTCATCAAGGAG +
Preference number: 3 (lower is better)
Translates to: SGGTGSLGSASW*ALKRPETFIKE
Trigger: CTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR CCA 72 bp GGATACAAGCTCCCTGAACCAGAGACAGGTAGAAAATaGCAGGGCCAGACATCTGCCCTGCTTGCCCCTCAG +
Preference number: 3 (lower is better)
Translates to: GYKLPEPETGRK*QGQTSALLAPQ
Trigger: CTGAGGGGCAAGCAGGGCAGATGTCTGGCCCTGCCATTTTCTACCTGTCTCTGGTTCAGGGAGCTTGTATCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 72 bp CCAGCCCACTTCCAGTCAGCATCTGTTTGTATTGACTaGGCTGCTAGTGTGTCCCTGCTCCATTGCCCCTCC +
Preference number: 3 (lower is better)
Translates to: PAHFQSASVCID*AASVSLLHCPS
Trigger: GGAGGGGCAATGGAGCAGGGACACACTAGCAGCCCAGTCAATACAAACAGATGCTGACTGGAAGTGGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 72 bp CAGTGCCTTGAGGTAATAGTCCAGGGATTGCTGAAGTaGGGGCACAGGCAGCCTTGGCAGTGCATCTTGGTG +
Preference number: 3 (lower is better)
Translates to: QCLEVIVQGLLK*GHRQPWQCILV
Trigger: CACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR-3UTR CAA 90 bp CACAGGGGTGCCAGCCTCCCGGCCCCACATTCCAAGCACATATGTACCCAGGGGCACTTCTTCCCTTTATaGATCACCTGGCATAATCAC +
Preference number: 3 (lower is better)
Translates to: HRGASLPAPHSKHICTQGHFFPL*ITWHNH
Trigger: GTGATTATGCCAGGTGATCAATAAAGGGAAGAAGTG...CCCCTGGGTACATATGTGCTTGGAATGTGGGGCCGGGAGGCTGGCACCCCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp ATAGGCTGTCTTGAGCCACCACTCGGACAGCCAGTTCTCCATTTTCTTGGCCCTATCAAGGAGGAGGGCTaGAGGAGGCCCAGGGGTTTT +
Preference number: 3 (lower is better)
Translates to: IGCLEPPLGQPVLHFLGPIKEEG*RRPRGF
Trigger: AAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGAT...AGGGCCAAGAAAATGGAGAACTGGCTGTCCGAGTGGTGGCTCAAGACAGCCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR TCA 72 bp TCCTTGGCTCAATGCCTTAGTTGTCACAGCTCAGCCTaGGGATGTTGTCTCTGGGAGCTTGCTGGCCCACAC +
Preference number: 3 (lower is better)
Translates to: SLAQCLSCHSSA*GCCLWELAGPH
Trigger: GTGTGGGCCAGCAAGCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGACAACTAAGGCATTGAGCCAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR TCA 72 bp GGTAGTTTCATCCTATGTTGCAGGCCCTGCCTCAGGTaGCCACAGGTCAGTCAGGTCACGGAGCACTTCACA +
Preference number: 3 (lower is better)
Translates to: GSFILCCRPCLR*PQVSQVTEHFT
Trigger: TGTGAAGTGCTCCGTGACCTGACTGACCTGTGGTCACCTGAGGCAGGGCCTGCAACATAGGATGAAACTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR TCA 72 bp CCCATTCTTCCTCACTCACGATGGGCTGCAGTGCCTTaGGGTAATAGTCCAGGGATTGCTGAAGTGGGGGCA +
Preference number: 3 (lower is better)
Translates to: PILPHSRWAAVP*GNSPGIAEVGA
Trigger: TGCCCCCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR GCA 72 bp GATGTTGTCTCTGGGAGCTTGCTGGCCCACACTGCCTaGTTGGATACAAGCTCCCTGAACCAGAGACAGGTA +
Preference number: 3 (lower is better)
Translates to: DVVSGSLLAHTA*LDTSSLNQRQV
Trigger: TACCTGTCTCTGGTTCAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCCAGAGACAACATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 72 bp GCGCACAGGCTGGCTTTCCTTTCCTGGCAGGTTATGTaGTACACCCTCTGGGTGGGAGTATATGGGAGATAC +
Preference number: 3 (lower is better)
Translates to: AHRLAFLSWQVM*YTLWVGVYGRY
Trigger: GTATCTCCCATATACTCCCACCCAGAGGGTGTAGCACATAACCTGCCAGGAAAGGAAAGCCAGCCTGTGCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR CCA 72 bp TTCCCGGCTCCTGCTGTGAGAAGGGATGGGCTGGACTaGCTCTCTTCTCCATGGTTCATGGAGTGGATGATA +
Preference number: 3 (lower is better)
Translates to: FPAPAVRRDGLD*LSSPWFMEWMI
Trigger: TATCATCCACTCCATGAACCATGGAGAAGAGAGCCAGTCCAGCCCATCCCTTCTCACAGCAGGAGCCGGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp CTTGGGGCCGGGCACACGGCAAGAAGACAGGATCTGATAATACTGGTTCATGCAGTAATAGTCCAGGGATaGCTGAAGTGGGGGCACAGG +
Preference number: 3 (lower is better)
Translates to: LGAGHTARRQDLIILVHAVIVQG*LKWGHR
Trigger: CCTGTGCCCCCACTTCAGCAATCCCTGGACTATTAC...TGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTGCCCGGCCCCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR GCA 72 bp ACTCTGGTACATAGCTATGCCGCTATGTCTGGTCTGTaGTACTGTCAAAAACCCTCCCTCCCTGCCAGCCTG +
Preference number: 3 (lower is better)
Translates to: TLVHSYAAMSGL*YCQKPSLPASL
Trigger: CAGGCTGGCAGGGAGGGAGGGTTTTTGACAGTAGCACAGACCAGACATAGCGGCATAGCTATGTACCAGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR GCA 72 bp GTGAGCCCATTCTTCCTCACTCACGATGGGCTGCAGTaGCTTGAGGTAATAGTCCAGGGATTGCTGAAGTGG +
Preference number: 3 (lower is better)
Translates to: VSPFFLTHDGLQ*LEVIVQGLLKW
Trigger: CCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR CCA 72 bp TCCATGGTTCATGGAGTGGATGATACATTGGGAACCTaGGCCGTAGTCTTGTTCAGCCTCTGGACTCAGCCC +
Preference number: 3 (lower is better)
Translates to: SMVHGVDDTLGT*AVVLFSLWTQP
Trigger: GGGCTGAGTCCAGAGGCTGAACAAGACTACGGCCCAGGTTCCCAATGTATCATCCACTCCATGAACCATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR GCA 72 bp CACGGCAAGAAGACAGGATCTGATAATACTGGTTCATaGACAGCGGCTGTCCTCCCAGGAACTCAACTGGCA +
Preference number: 3 (lower is better)
Translates to: HGKKTGSDNTGS*TAAVLPGTQLA
Trigger: TGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR TCA 72 bp TGGACTGGCTCTCTTCTCCATGGTTCATGGAGTGGATaGTACATTGGGAACCTGGGCCGTAGTCTTGTTCAG +
Preference number: 3 (lower is better)
Translates to: WTGSLLHGSWSG*YIGNLGRSLVQ
Trigger: CTGAACAAGACTACGGCCCAGGTTCCCAATGTATCATCCACTCCATGAACCATGGAGAAGAGAGCCAGTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR TCA 72 bp TTCCATATCCAACTCCACATGCATTGTCTGCCTCAGTaGGGAGACTTCTGCCTTAGAAGAACTGCCCGCCAC +
Preference number: 3 (lower is better)
Translates to: FHIQLHMHCLPQ*GDFCLRRTARH
Trigger: GTGGCGGGCAGTTCTTCTAAGGCAGAAGTCTCCTCACTGAGGCAGACAATGCATGTGGAGTTGGATATGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR CCA 72 bp GCTGGTCCTTGGGCATTTACCAATGAAGACAGATTTTaGCCTGGCTGTGGAGATGACAAGAGATTGGCCAGG +
Preference number: 3 (lower is better)
Translates to: AGPWAFTNEDRF*PGCGDDKRLAR
Trigger: CCTGGCCAATCTCTTGTCATCTCCACAGCCAGGCCAAAATCTGTCTTCATTGGTAAATGCCCAAGGACCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CCA 72 bp CCCTCACTGATAGATAATCCTCCCACCGCTGGTCCTTaGGCATTTACCAATGAAGACAGATTTTGGCCTGGC +
Preference number: 3 (lower is better)
Translates to: PSLIDNPPTAGP*AFTNEDRFWPG
Trigger: GCCAGGCCAAAATCTGTCTTCATTGGTAAATGCCCAAGGACCAGCGGTGGGAGGATTATCTATCAGTGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp TCCAACTCCACATGCATTGTCTGCCTCAGTGAGGAGACTTCTGCCTTAGAAGAAGGAGATGACAAGAGATaGGCCAGGCTGAGGAAAGGA +
Preference number: 3 (lower is better)
Translates to: SNSTCIVCLSEETSALEEGDDKR*ARLRKG
Trigger: TCCTTTCCTCAGCCTGGCCAATCTCTTGTCATCTCC...TTCTTCTAAGGCAGAAGTCTCCTCACTGAGGCAGACAATGCATGTGGAGTTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp AGAACTAGGATACATCCTGGGGAAATCTGGTTAGCCCCTGCTAGCACCCTGACTCAGCATCTGTTTGTATaGACTGGGCTGCTAGTGTGT +
Preference number: 3 (lower is better)
Translates to: RTRIHPGEIWLAPASTLTQHLFV*TGLLVC
Trigger: ACACACTAGCAGCCCAGTCAATACAAACAGATGCTG...AGTCAGGGTGCTAGCAGGGGCTAACCAGATTTCCCCAGGATGTATCCTAGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR-3UTR CAA 90 bp ACAGGATCTGATAATACTGGTTCATGCACAGCGGCTGTCCTCCCAGGAACTCAAAAACTCATCCACCAGTaGCTTGGTGTGAGCCCATTC +
Preference number: 3 (lower is better)
Translates to: TGSDNTGSCTAAVLPGTQKLIHQ*LGVSPF
Trigger: GAATGGGCTCACACCAAGCAACTGGTGGATGAGTTT...TTGAGTTCCTGGGAGGACAGCCGCTGTGCATGAACCAGTATTATCAGATCCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
3UTR GCA 72 bp TCTGCCCTTCACAAGGCTTCCATATCCAACTCCACATaGATTGTCTGCCTCAGTGAGGAGACTTCTGCCTTA +
Preference number: 3 (lower is better)
Translates to: SALHKASISNST*IVCLSEETSAL
Trigger: TAAGGCAGAAGTCTCCTCACTGAGGCAGACAATGCATGTGGAGTTGGATATGGAAGCCTTGTGAAGGGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR GCA 72 bp CACAAGGCTTCCATATCCAACTCCACATGCATTGTCTaGCTCAGTGAGGAGACTTCTGCCTTAGAAGAACTG +
Preference number: 3 (lower is better)
Translates to: HKASISNSTCIV*LSEETSALEEL
Trigger: CAGTTCTTCTAAGGCAGAAGTCTCCTCACTGAGGCAGACAATGCATGTGGAGTTGGATATGGAAGCCTTGTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR TCA 72 bp AAACTCTGGAGGCTGAGCATACATTACTTGAGCTTCTaGAAGGAGGCTCAGAGACAAGGATGTGGTAAGACC +
Preference number: 3 (lower is better)
Translates to: KLWRLSIHYLSF*KEAQRQGCGKT
Trigger: GGTCTTACCACATCCTTGTCTCTGAGCCTCCTTTCAGAAGCTCAAGTAATGTATGCTCAGCCTCCAGAGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR TCA 72 bp GAAAGGAGGCTCAGAGACAAGGATGTGGTAAGACCATaGAGTCACAGGCATTTCCAGGATATTTTTGTTCCC +
Preference number: 3 (lower is better)
Translates to: ERRLRDKDVVRP*SHRHFQDIFVP
Trigger: GGGAACAAAAATATCCTGGAAATGCCTGTGACTTCATGGTCTTACCACATCCTTGTCTCTGAGCCTCCTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
3UTR CCA 72 bp TTTAGTTACAGTGGAGTTCAGGTCTTTTCTGTGGCCTaGTCAGAACTAGGATACATCCTGGGGAAATCTGGT +
Preference number: 3 (lower is better)
Translates to: FSYSGVQVFSVA*SELGYILGKSG
Trigger: ACCAGATTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTGAACTCCACTGTAACTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp AGAGTGTGGCAGCAGGGAGATGGCACCTTGAGGTGGGCTGGTGGAGGCTGGGCCACGCCCCCTGAGGTCTaGAACTCATCCACCAGTTGC +
Preference number: 4 (lower is better)
Translates to: RVWQQGDGTLRWAGGGWATPPEV*NSSTSC
Trigger: GCAACTGGTGGATGAGTTTCAGACCTCAGGGGGCGT...GGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGCCACACTCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp CTCCGGCAGGTGCTAAGGACAGGGCCTGGAAGGCACTTGGTGTGGACGTTGGGGTCAGTGCGGCCCAGGTaGAACATGCGCAGAGAGGCA +
Preference number: 4 (lower is better)
Translates to: LRQVLRTGPGRHLVWTLGSVRPR*NMRREA
Trigger: TGCCTCTCTGCGCATGTTTCACCTGGGCCGCACTGA...CCCCAACGTCCACACCAAGTGCCTTCCAGGCCCTGTCCTTAGCACCTGCCGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp GCAGCAGGGAGATGGCACCTTGAGGTGGGCTGGTGGAGGCTGGGCCTCAGATGTAGCGGATGGTGTCAGTaGGGCCCAGGTGAAACATGC +
Preference number: 4 (lower is better)
Translates to: AAGRWHLEVGWWRLGLRCSGWCQ*GPGETC
Trigger: GCATGTTTCACCTGGGCCGCACTGACACCATCCGCT...ACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp CACAGGGGTGCCAGCCTCCCGGCCCCACATTCCAAGCACATATGTACCCAGGGGGGGCAGGATCACTCCTaGGCTGGAGTAGATGACCAC +
Preference number: 4 (lower is better)
Translates to: HRGASLPAPHSKHICTQGGQDHS*AGVDDH
Trigger: GTGGTCATCTACTCCAGCCCAGGAGTGATCCTGCCC...CCCCTGGGTACATATGTGCTTGGAATGTGGGGCCGGGAGGCTGGCACCCCTGTG
62% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp CAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGCCACTGAGTCCTGCTTaGGGCCGGGCACACGGCAAG +
Preference number: 4 (lower is better)
Translates to: QVSIPKWVWLWKWQVWAWPLSPA*GRAHGK
Trigger: CTTGCCGTGTGCCCGGCCCCAAGCAGGACTCAGTGG...CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GCAGCAGGGAGATGGCACCTTGAGGTGGGCTGGTGGAGGCTGGGCCTCAGATGTCTGACACGGAGAAGTTaGTATGGGCCTCCATGGGGT +
Preference number: 4 (lower is better)
Translates to: AAGRWHLEVGWWRLGLRCLTRRS*YGPPWG
Trigger: ACCCCATGGAGGCCCATATCAACTTCTCCGTGTCAG...ACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp CATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCACTGAGTCCTGCTTaGGGCCGGGCACACGGCAAG +
Preference number: 4 (lower is better)
Translates to: HGKCPSQSGFGCGSGRSGPLSPA*GRAHGK
Trigger: CTTGCCGTGTGCCCGGCCCCAAGCAGGACTCAGTGG...CCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp AGAAGAACTGCCCGCCACCAAGCTGATGACCAGAGGCCATGCAGCACTGAGTGCCTGGGCTGGAGTAGATaGCCACAGGCTGGCGGAACT +
Preference number: 4 (lower is better)
Translates to: RRTARHQADDQRPCSTECLGWSR*PQAGGT
Trigger: AGTTCCGCCAGCCTGTGGTCATCTACTCCAGCCCAG...GCACTCAGTGCTGCATGGCCTCTGGTCATCAGCTTGGTGGCGGGCAGTTCTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGCGAGTCTATGGAGGCTaGGCGGATGGTGTCAGTGCG +
Preference number: 4 (lower is better)
Translates to: ASVHPKVGLAVEVAGLGLRVYGG*ADGVSA
Trigger: CGCACTGACACCATCCGCTCAGCCTCCATAGACTCG...CAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR GCA 90 bp CAGGCCCTGCCTCAGGTGACCACAGGTCAGTCAGGTCACGGAGCACTTCACAGGAGGCAGCCTTGGCAGTaGATCTTGGTGGGCCTTGAA +
Preference number: 4 (lower is better)
Translates to: QALPQVTTGQSGHGALHRRQPWQ*ILVGLE
Trigger: TTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCT...CCTGTGAAGTGCTCCGTGACCTGACTGACCTGTGGTCACCTGAGGCAGGGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp GCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGTTCAGACCCAGCAGGTaGCGGTCAAAGGCCTCCCCT +
Preference number: 4 (lower is better)
Translates to: ASVHPKVGLAVEVAGLGLFRPSR*RSKASP
Trigger: AGGGGAGGCCTTTGACCGGCACCTGCTGGGTCTGAA...CAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR GCA 90 bp AAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGGAGGTCCTCGATGGCCTaGAGCTTCAGACCCAGCAGG +
Preference number: 4 (lower is better)
Translates to: KCPSQSGFGCGSGRSGPGRSSMA*SFRPSR
Trigger: CCTGCTGGGTCTGAAGCTGCAGGCCATCGAGGACCT...CCCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR TCA 90 bp CAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGTCAAGGAGGAGGGCTTaGGGAGGCCCAGGGGTTTTA +
Preference number: 4 (lower is better)
Translates to: QVSIPKWVWLWKWQVWAWSRRRA*GGPGVL
Trigger: TAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGA...CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCCTGGGCTGGAGTAGATaGCCACAGGCTGGCGGAACT +
Preference number: 4 (lower is better)
Translates to: EPWQVSIPKWVWLWKWQVLGWSR*PQAGGT
Trigger: AGTTCCGCCAGCCTGTGGTCATCTACTCCAGCCCAG...GACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp CCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGTCAGTGCGGCCCAGGTaGAACATGCGCAGAGAGGCA +
Preference number: 4 (lower is better)
Translates to: PWQVSIPKWVWLWKWQVWSVRPR*NMRREA
Trigger: TGCCTCTCTGCGCATGTTTCACCTGGGCCGCACTGA...CCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR TCA 90 bp GAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCCGAGTCTATGGAGGCTaGGCGGATGGTGTCAGTGCG +
Preference number: 4 (lower is better)
Translates to: EPWQVSIPKWVWLWKWQVRVYGG*ADGVSA
Trigger: CGCACTGACACCATCCGCTCAGCCTCCATAGACTCG...GACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR TCA 90 bp CAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGAGATGTCAGGCATGCTaGCCAGGTCCTCGATGGCCT +
Preference number: 4 (lower is better)
Translates to: QVSIPKWVWLWKWQVWAWRCQAC*PGPRWP
Trigger: AGGCCATCGAGGACCTGGTCAGCATGCCTGACATCT...CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp CAGGCCCTGCCTCAGGTGACCACAGGTCAGTCAGGTCACGGAGCACTTCACAGGCACGATGGGCTGCAGTaGCTTGAGGTAATAGTCCAG +
Preference number: 4 (lower is better)
Translates to: QALPQVTTGQSGHGALHRHDGLQ*LEVIVQ
Trigger: CTGGACTATTACCTCAAGGCACTGCAGCCCATCGTG...CCTGTGAAGTGCTCCGTGACCTGACTGACCTGTGGTCACCTGAGGCAGGGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp AGGCCAGCTGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAAGCGGATGGTGTCAGTaGGGCCCAGGTGAAACATGC +
Preference number: 4 (lower is better)
Translates to: RPAAPGFGLRSVCHPRSISGWCQ*GPGETC
Trigger: GCATGTTTCACCTGGGCCGCACTGACACCATCCGCT...TATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCAGCTGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp TGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGCACTGCAAGCAGCTCCACCTTCTaGTGCTCCGGCACTGTGGAG +
Preference number: 4 (lower is better)
Translates to: CTWLWAEECLPPQIHSTASSSTF*CSGTVE
Trigger: CTCCACAGTGCCGGAGCAGCAGAAGGTGGAGCTGCT...TGCAGTGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp GCAGCAGGGAGATGGCACCTTGAGGTGGGCTGGTGGAGGCTGGGCCTCAGATGTTGGGGTTGTAGCAGATaGCATAACCATCTGGGACCA +
Preference number: 4 (lower is better)
Translates to: AAGRWHLEVGWWRLGLRCWGCSR*HNHLGP
Trigger: TGGTCCCAGATGGTTATGGCATCTGCTACAACCCCA...ACATCTGAGGCCCAGCCTCCACCAGCCCACCTCAAGGTGCCATCTCCCTGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp AGGCCAGCTGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGGGCAGGATCACTCCTaGGCTGGAGTAGATGACCAC +
Preference number: 4 (lower is better)
Translates to: RPAAPGFGLRSVCHPRSIGQDHS*AGVDDH
Trigger: GTGGTCATCTACTCCAGCCCAGGAGTGATCCTGCCC...TATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCAGCTGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTCCACAAAGTCCTGCTTaGGCAGGATCACTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: GKCPSQSGFGCGSGRSGPPQSPA*AGSLLG
Trigger: GCCCAGGAGTGATCCTGCCCAAGCAGGACTTTGTGG...AGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp CGCACAGGCTGGCTTTCCTTTCCTGGCAGGTTATGTGCTACACCCTCTGGGTGGCCACAAAGTCCTGCTTaGGCAGGATCACTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: RTGWLSFPGRLCATPSGWPQSPA*AGSLLG
Trigger: GCCCAGGAGTGATCCTGCCCAAGCAGGACTTTGTGG...CCACCCAGAGGGTGTAGCACATAACCTGCCAGGAAAGGAAAGCCAGCCTGTGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GAGGTAGTTTCATCCTATGTTGCAGGCCCTGCCTCAGGTGACCACAGGTCAGTCGGAGATAGGCTGTCTTaGGCCACCACTCGGACAGCC +
Preference number: 4 (lower is better)
Translates to: EVVSSYVAGPASGDHRSVGDRLS*ATTRTA
Trigger: GGCTGTCCGAGTGGTGGCTCAAGACAGCCTATCTCC...GACTGACCTGTGGTCACCTGAGGCAGGGCCTGCAACATAGGATGAAACTACCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCGGAGATAGGCTGTCTTaGGCCACCACTCGGACAGCC +
Preference number: 4 (lower is better)
Translates to: EVSHGKCPSQSGFGCGSGGDRLS*ATTRTA
Trigger: GGCTGTCCGAGTGGTGGCTCAAGACAGCCTATCTCC...GCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GCACATGGACTCCGGCAGGTGCTAAGGACAGGGCCTGGAAGGCACTTGGTGTGGCCAATACACCCTCGATaGGTTTGGCAGCAAACCGAA +
Preference number: 4 (lower is better)
Translates to: AHGLRQVLRTGPGRHLVWPIHPR*VWQQTE
Trigger: TTCGGTTTGCTGCCAAACTCATCGAGGGTGTATTGG...CCACACCAAGTGCCTTCCAGGCCCTGTCCTTAGCACCTGCCGGAGTCCATGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp TGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCCTGACACGGAGAAGTTaGTATGGGCCTCCATGGGGT +
Preference number: 4 (lower is better)
Translates to: WQVSIPKWVWLWKWQVWALTRRS*YGPPWG
Trigger: ACCCCATGGAGGCCCATATCAACTTCTCCGTGTCAG...GGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR GCA 90 bp GTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGAGCGGATGGTGTCAGTaGGGCCCAGGTGAAACATGC +
Preference number: 4 (lower is better)
Translates to: VSHGKCPSQSGFGCGSGRSGWCQ*GPGETC
Trigger: GCATGTTTCACCTGGGCCGCACTGACACCATCCGCT...CCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR GCA 90 bp GGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGAGCAGCTCCACCTTCTaGTGCTCCGGCACTGTGGAG +
Preference number: 4 (lower is better)
Translates to: GSEPWQVSIPKWVWLWKWSSSTF*CSGTVE
Trigger: CTCCACAGTGCCGGAGCAGCAGAAGGTGGAGCTGCT...CCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR GCA 90 bp GAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGCAGCTCCACCTTCTaGTGCTCCGGCACTGTGGAG +
Preference number: 4 (lower is better)
Translates to: EVSHGKCPSQSGFGCGSGSSSTF*CSGTVE
Trigger: CTCCACAGTGCCGGAGCAGCAGAAGGTGGAGCTGCT...GCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR GCA 90 bp AAGGTTGGGGACCTGATAGTGACAGCTCCTCCAGCCCACTTCCAGTCAGCATCTTTCAGACCCAGCAGGTaGCGGTCAAAGGCCTCCCCT +
Preference number: 4 (lower is better)
Translates to: KVGDLIVTAPPAHFQSASFRPSR*RSKASP
Trigger: AGGGGAGGCCTTTGACCGGCACCTGCTGGGTCTGAA...AGATGCTGACTGGAAGTGGGCTGGAGGAGCTGTCACTATCAGGTCCCCAACCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp ACAGGTAGAAAATGGCAGGGCCAGACATCTGCCCTGCTTGCCCCTCAGCTGAATAGGTCCTCGATGGCCTaGAGCTTCAGACCCAGCAGG +
Preference number: 4 (lower is better)
Translates to: TGRKWQGQTSALLAPQLNRSSMA*SFRPSR
Trigger: CCTGCTGGGTCTGAAGCTGCAGGCCATCGAGGACCT...ATTCAGCTGAGGGGCAAGCAGGGCAGATGTCTGGCCCTGCCATTTTCTACCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp TGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCCTTGGCAGTGCATCTTaGTGGGCCTTGAAGCGACCA +
Preference number: 4 (lower is better)
Translates to: WQVSIPKWVWLWKWQVWALGSAS*WALKRP
Trigger: TGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAG...GGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp AGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTCAGGGATTGCTGAAGTaGGGGCACAGGCAGCCTTGG +
Preference number: 4 (lower is better)
Translates to: SHGKCPSQSGFGCGSGRSQGLLK*GHRQPW
Trigger: CCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTG...AGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGGTTGTTGTAGGCCTTaGCCCAGGTGTTTCGGTGGT +
Preference number: 4 (lower is better)
Translates to: ASVHPKVGLAVEVAGLGLGCCRP*PRCFGG
Trigger: ACCACCGAAACACCTGGGCCAAGGCCTACAACAACC...CAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCTTGCTGGCCCACACTGCCCAGCTTCTTGGGCATTaGCAAGGGCACCATAGGAGA +
Preference number: 4 (lower is better)
Translates to: VTAQPEDVVSGSLLAHTAQLLGH*QGHHRR
Trigger: TCTCCTATGGTGCCCTTGCCAATGCCCAAGAAGCTG...GGCAGTGTGGGCCAGCAAGCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp CAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGGTCTTGGCAGGGACCTaGCTGGTAGAGAGGTTGAAG +
Preference number: 4 (lower is better)
Translates to: QVSIPKWVWLWKWQVWAWVLAGT*LVERLK
Trigger: CTTCAACCTCTCTACCAGCCAGGTCCCTGCCAAGAC...CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGGGACCAGGTCCTCGATaGCCTGCAGCTTCAGACCCA +
Preference number: 4 (lower is better)
Translates to: GSEPWQVSIPKWVWLWKWGPGPR*PAASDP
Trigger: TGGGTCTGAAGCTGCAGGCCATCGAGGACCTGGTCC...CCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155790.8
3UTR CAA 72 bp GTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCTaGCTGGCCCACACTGCCTGCTTGGATACAAGCTCC +
Preference number: 4 (lower is better)
Translates to: VTAQPEDVVSGS*LAHTACLDTSS
Trigger: GGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CAA 72 bp GAGGCCAGCTGCACCTGGCTTTGGGCTGAGGAGTGTTaGCCACCCCAGATCCATAGCACTGCACTAACCATG +
Preference number: 4 (lower is better)
Translates to: EASCTWLWAEEC*PPQIHSTALTM
Trigger: CATGGTTAGTGCAGTGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCAGCTGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CAA 72 bp TTGAGCCACCACTCGGACAGCCAGTTCTCCATTTTCTaGGCCCTGCGCTCCAGTCCCTTCTGTAGGCGTTCC +
Preference number: 4 (lower is better)
Translates to: LSHHSDSQFSIF*ALRSSPFCRRS
Trigger: GGAACGCCTACAGAAGGGACTGGAGCGCAGGGCCAAGAAAATGGAGAACTGGCTGTCCGAGTGGTGGCTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
CDS-3UTR TCA 90 bp AGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGTCAAGGAGGAGGGCTTaGGGAGGCCCAGGGGTTTTA +
Preference number: 4 (lower is better)
Translates to: SEPWQVSIPKWVWLWKWQSRRRA*GGPGVL
Trigger: TAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGA...CTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp TGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCCATCTTGGTGGGCCTTaGAGCGACCAGAAACCTTCA +
Preference number: 4 (lower is better)
Translates to: WQVSIPKWVWLWKWQVWAHLGGP*SDQKPS
Trigger: TGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATG...GGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCACGCCCCCTGAGGTCTaGAACTCATCCACCAGTTGC +
Preference number: 4 (lower is better)
Translates to: EVSHGKCPSQSGFGCGSGTPPEV*NSSTSC
Trigger: GCAACTGGTGGATGAGTTTCAGACCTCAGGGGGCGT...GCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp AAGGTTGGGGACCTGATAGTGACAGCTCCTCCAGCCCACTTCCAGTCAGCATCTTTCCCCTACGCCCCCTaGGGTCTGAAACTCATCCAC +
Preference number: 4 (lower is better)
Translates to: KVGDLIVTAPPAHFQSASFPYAP*GLKLIH
Trigger: GTGGATGAGTTTCAGACCTCAGGGGGCGTAGGGGAA...AGATGCTGACTGGAAGTGGGCTGGAGGAGCTGTCACTATCAGGTCCCCAACCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp AAGGTTGGGGACCTGATAGTGACAGCTCCTCCAGCCCACTTCCAGTCAGCATCTAGATGTCAGGCATGCTaGCCAGGTCCTCGATGGCCT +
Preference number: 4 (lower is better)
Translates to: KVGDLIVTAPPAHFQSASRCQAC*PGPRWP
Trigger: AGGCCATCGAGGACCTGGTCAGCATGCCTGACATCT...AGATGCTGACTGGAAGTGGGCTGGAGGAGCTGTCACTATCAGGTCCCCAACCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp GGGAGCTTGCTGGCCCACACTGCCTGCTTGGATACAAGCTCCCTGAACCAGAGACCATTTTCTTGGCCCTaGGCTCCAGTCCCTTCTGTA +
Preference number: 4 (lower is better)
Translates to: GSLLAHTACLDTSSLNQRPFSWP*APVPSV
Trigger: TACAGAAGGGACTGGAGCGCAGGGCCAAGAAAATGG...TCTCTGGTTCAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp AAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGGACAGGAGCCGTCTTCTaGCACGATGAACTGCAGTGT +
Preference number: 4 (lower is better)
Translates to: KCPSQSGFGCGSGRSGPGTGAVF*HDELQC
Trigger: ACACTGCAGTTCATCGTGGCAGAAGACGGCTCCTGT...CCCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp ATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTTGGCAGTGCATCTTaGTGGGCCTTGAAGCGACCA +
Preference number: 4 (lower is better)
Translates to: MASVHPKVGLAVEVAGLGLGSAS*WALKRP
Trigger: TGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAG...GCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp TCTGGGAGCTTGCTGGCCCACACTGCCTGCTTGGATACAAGCTCCCTGAACCAGAGTTCTCCATTTTCTTaGCCCTGCGCTCCAGTCCCT +
Preference number: 4 (lower is better)
Translates to: SGSLLAHTACLDTSSLNQSSPFS*PCAPVP
Trigger: AGGGACTGGAGCGCAGGGCCAAGAAAATGGAGAACT...CTGGTTCAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp TGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCAGGCACTTTCATACGTaGCACACGCCTGCCCATAGA +
Preference number: 4 (lower is better)
Translates to: WQVSIPKWVWLWKWQVWARHFHT*HTPAHR
Trigger: TCTATGGGCAGGCGTGTGCCACGTATGAAAGTGCCT...GGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
3UTR CAA 72 bp CTGAAGTGGGGGCACAGGCAGCCTTGGCAGTGCATCTaGGTGGGCCTTGAAGCGACCAGAAACCTTCATCAA +
Preference number: 4 (lower is better)
Translates to: LKWGHRQPWQCI*VGLEATRNLHQ
Trigger: TTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
CDS-3UTR TCA 90 bp CCACCGCTGGTCCTTGGGCATTTACCAATGAAGACAGATTTTGGCCTGGCTGTGTTCCCCTACGCCCCCTaGGGTCTGAAACTCATCCAC +
Preference number: 4 (lower is better)
Translates to: PPLVLGHLPMKTDFGLAVFPYAP*GLKLIH
Trigger: GTGGATGAGTTTCAGACCTCAGGGGGCGTAGGGGAA...CACAGCCAGGCCAAAATCTGTCTTCATTGGTAAATGCCCAAGGACCAGCGGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGCACAAAGATCTGATCTaGGGTGAGCGGTGTTCCGTC +
Preference number: 4 (lower is better)
Translates to: AMASVHPKVGLAVEVAGLHKDLI*GERCSV
Trigger: GACGGAACACCGCTCACCTCAGATCAGATCTTTGTG...CAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp GAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCCACGATGGGCTGCAGTaGCTTGAGGTAATAGTCCAG +
Preference number: 4 (lower is better)
Translates to: EPWQVSIPKWVWLWKWQVHDGLQ*LEVIVQ
Trigger: CTGGACTATTACCTCAAGGCACTGCAGCCCATCGTG...GACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp CCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGCCTTCTGCAGCTGCATaGTCATACACCATCCCACAG +
Preference number: 4 (lower is better)
Translates to: PWQVSIPKWVWLWKWQVWPSAAA*SYTIPQ
Trigger: CTGTGGGATGGTGTATGAGCATGCAGCTGCAGAAGG...CCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp AAGGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTTTCAGACCCAGCAGGTaGCGGTCAAAGGCCTCCCCT +
Preference number: 4 (lower is better)
Translates to: KEVSHGKCPSQSGFGCGSFRPSR*RSKASP
Trigger: AGGGGAGGCCTTTGACCGGCACCTGCTGGGTCTGAA...ACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR GCA 90 bp TCTGGGAGCTTGCTGGCCCACACTGCCTGCTTGGATACAAGCTCCCTGAACCAGTGGGGTTGTAGCAGATaGCATAACCATCTGGGACCA +
Preference number: 4 (lower is better)
Translates to: SGSLLAHTACLDTSSLNQWGCSR*HNHLGP
Trigger: TGGTCCCAGATGGTTATGGCATCTGCTACAACCCCA...CTGGTTCAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp AAGGTTGGGGACCTGATAGTGACAGCTCCTCCAGCCCACTTCCAGTCAGCATCTGGCAGTGCATCTTGGTaGGCCTTGAAGCGACCAGAA +
Preference number: 4 (lower is better)
Translates to: KVGDLIVTAPPAHFQSASGSASW*ALKRPE
Trigger: TTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCC...AGATGCTGACTGGAAGTGGGCTGGAGGAGCTGTCACTATCAGGTCCCCAACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGGGTGTTCCGTCACTGTaGTACACATCCAGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: VSHGKCPSQSGFGCGSGRGVPSL*YTSSSK
Trigger: CTTCGAGCTGGATGTGTACCACAGTGACGGAACACC...CCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp AAGGTTGGGGACCTGATAGTGACAGCTCCTCCAGCCCACTTCCAGTCAGCATCTGGTTGTTGTAGGCCTTaGCCCAGGTGTTTCGGTGGT +
Preference number: 4 (lower is better)
Translates to: KVGDLIVTAPPAHFQSASGCCRP*PRCFGG
Trigger: ACCACCGAAACACCTGGGCCAAGGCCTACAACAACC...AGATGCTGACTGGAAGTGGGCTGGAGGAGCTGTCACTATCAGGTCCCCAACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CAA 72 bp CTCCTCCAGCCCACTTCCAGTCAGCATCTGTTTGTATaGACTGGGCTGCTAGTGTGTCCCTGCTCCATTGCC +
Preference number: 4 (lower is better)
Translates to: LLQPTSSQHLFV*TGLLVCPCSIA
Trigger: GGCAATGGAGCAGGGACACACTAGCAGCCCAGTCAATACAAACAGATGCTGACTGGAAGTGGGCTGGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GAGGTAGTTTCATCCTATGTTGCAGGCCCTGCCTCAGGTGACCACAGGTCAGTCTGTCCAGGCACACGGTaGAGATGCTCTTCTGTATGG +
Preference number: 4 (lower is better)
Translates to: EVVSSYVAGPASGDHRSVCPGTR*RCSSVW
Trigger: CCATACAGAAGAGCATCTTCACCGTGTGCCTGGACA...GACTGACCTGTGGTCACCTGAGGCAGGGCCTGCAACATAGGATGAAACTACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp TCCAGTCAGCATCTGTTTGTATTGACTGGGCTGCTAGTGTGTCCCTGCTCCATTTCAGTGCGGCCCAGGTaGAACATGCGCAGAGAGGCA +
Preference number: 4 (lower is better)
Translates to: SSQHLFVLTGLLVCPCSISVRPR*NMRREA
Trigger: TGCCTCTCTGCGCATGTTTCACCTGGGCCGCACTGA...AATGGAGCAGGGACACACTAGCAGCCCAGTCAATACAAACAGATGCTGACTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp CAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGACAGCTGTTGTAGGCTaGCACGGAGAAGTTGATATG +
Preference number: 4 (lower is better)
Translates to: QVSIPKWVWLWKWQVWAWTAVVG*HGEVDM
Trigger: CATATCAACTTCTCCGTGTCAGCCTACAACAGCTGT...CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR TCA 90 bp CGCACAGGCTGGCTTTCCTTTCCTGGCAGGTTATGTGCTACACCCTCTGGGTGGACAGCTGTTGTAGGCTaGCACGGAGAAGTTGATATG +
Preference number: 4 (lower is better)
Translates to: RTGWLSFPGRLCATPSGWTAVVG*HGEVDM
Trigger: CATATCAACTTCTCCGTGTCAGCCTACAACAGCTGT...CCACCCAGAGGGTGTAGCACATAACCTGCCAGGAAAGGAAAGCCAGCCTGTGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp ACAGGTAGAAAATGGCAGGGCCAGACATCTGCCCTGCTTGCCCCTCAGCTGAATACAGGAGCCGTCTTCTaGCACGATGAACTGCAGTGT +
Preference number: 4 (lower is better)
Translates to: TGRKWQGQTSALLAPQLNTGAVF*HDELQC
Trigger: ACACTGCAGTTCATCGTGGCAGAAGACGGCTCCTGT...ATTCAGCTGAGGGGCAAGCAGGGCAGATGTCTGGCCCTGCCATTTTCTACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp TGGCTCAATGCCTTAGTTGTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCGGCAGTGCATCTTGGTaGGCCTTGAAGCGACCAGAA +
Preference number: 4 (lower is better)
Translates to: WLNALVVTAQPEDVVSGSGSASW*ALKRPE
Trigger: TTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCC...GCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGACAACTAAGGCATTGAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp CAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGTCCCAGGAACTCAACTaGCAGCGTCTCATTGTCAAT +
Preference number: 4 (lower is better)
Translates to: QVSIPKWVWLWKWQVWAWSQELN*QRLIVN
Trigger: ATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGA...CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp AAGGTTGGGGACCTGATAGTGACAGCTCCTCCAGCCCACTTCCAGTCAGCATCTAGGCACTTTCATACGTaGCACACGCCTGCCCATAGA +
Preference number: 4 (lower is better)
Translates to: KVGDLIVTAPPAHFQSASRHFHT*HTPAHR
Trigger: TCTATGGGCAGGCGTGTGCCACGTATGAAAGTGCCT...AGATGCTGACTGGAAGTGGGCTGGAGGAGCTGTCACTATCAGGTCCCCAACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp TGGCTCAATGCCTTAGTTGTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCGTCTTGGCAGGGACCTaGCTGGTAGAGAGGTTGAAG +
Preference number: 4 (lower is better)
Translates to: WLNALVVTAQPEDVVSGSVLAGT*LVERLK
Trigger: CTTCAACCTCTCTACCAGCCAGGTCCCTGCCAAGAC...GCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGACAACTAAGGCATTGAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp TGGCTCAATGCCTTAGTTGTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCTGGGCTGCAGTGCCTTaGGGTAATAGTCCAGGGATT +
Preference number: 4 (lower is better)
Translates to: WLNALVVTAQPEDVVSGSWAAVP*GNSPGI
Trigger: AATCCCTGGACTATTACCTCAAGGCACTGCAGCCCA...GCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGACAACTAAGGCATTGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp ATGGAAGCAATAAGTCTGGGGCTCAAGAGTCACCAGAGTGTGGCAGCAGGGAGACACAAAGATCTGATCTaGGGTGAGCGGTGTTCCGTC +
Preference number: 4 (lower is better)
Translates to: MEAISLGLKSHQSVAAGRHKDLI*GERCSV
Trigger: GACGGAACACCGCTCACCTCAGATCAGATCTTTGTG...TCTCCCTGCTGCCACACTCTGGTGACTCTTGAGCCCCAGACTTATTGCTTCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp ACAGGTAGAAAATGGCAGGGCCAGACATCTGCCCTGCTTGCCCCTCAGCTGAATAGCTGCACAAAGATCTaGTCTGAGGTGAGCGGTGTT +
Preference number: 4 (lower is better)
Translates to: TGRKWQGQTSALLAPQLNSCTKI*SEVSGV
Trigger: AACACCGCTCACCTCAGATCAGATCTTTGTGCAGCT...ATTCAGCTGAGGGGCAAGCAGGGCAGATGTCTGGCCCTGCCATTTTCTACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp TGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCAAGTCCTTTCCAAAGTaGTGGAACGTCAGCATCATG +
Preference number: 4 (lower is better)
Translates to: WQVSIPKWVWLWKWQVWAKSFPK*WNVSIM
Trigger: CATGATGCTGACGTTCCATCACTTTGGAAAGGACTT...GGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR TCA 90 bp CAGAGTCTCAAGCCCTTCCCTGCCTTACAGATGACTAATGTACTCTTGGGAGCCCTGACACGGAGAAGTTaGTATGGGCCTCCATGGGGT +
Preference number: 4 (lower is better)
Translates to: QSLKPFPALQMTNVLLGALTRRS*YGPPWG
Trigger: ACCCCATGGAGGCCCATATCAACTTCTCCGTGTCAG...GGCTCCCAAGAGTACATTAGTCATCTGTAAGGCAGGGAAGGGCTTGAGACTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGACAGCTGTTGTAGGCTaGCACGGAGAAGTTGATATG +
Preference number: 4 (lower is better)
Translates to: AMASVHPKVGLAVEVAGLTAVVG*HGEVDM
Trigger: CATATCAACTTCTCCGTGTCAGCCTACAACAGCTGT...CAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR GCA 90 bp CAGAGTCTCAAGCCCTTCCCTGCCTTACAGATGACTAATGTACTCTTGGGAGCCAGGCAGCCTTGGCAGTaGATCTTGGTGGGCCTTGAA +
Preference number: 4 (lower is better)
Translates to: QSLKPFPALQMTNVLLGARQPWQ*ILVGLE
Trigger: TTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCT...GGCTCCCAAGAGTACATTAGTCATCTGTAAGGCAGGGAAGGGCTTGAGACTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp TGGCTCAATGCCTTAGTTGTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCCCTTCTGCAGCTGCATaGTCATACACCATCCCACAG +
Preference number: 4 (lower is better)
Translates to: WLNALVVTAQPEDVVSGSPSAAA*SYTIPQ
Trigger: CTGTGGGATGGTGTATGAGCATGCAGCTGCAGAAGG...GCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGACAACTAAGGCATTGAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp GGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGTGGGGTTGTAGCAGATaGCATAACCATCTGGGACCA +
Preference number: 4 (lower is better)
Translates to: GSEPWQVSIPKWVWLWKWWGCSR*HNHLGP
Trigger: TGGTCCCAGATGGTTATGGCATCTGCTACAACCCCA...CCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR CCA 90 bp AGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTCATCCACCAGTTGCTTaGTGTGAGCCCATTCTTCCT +
Preference number: 4 (lower is better)
Translates to: SHGKCPSQSGFGCGSGRSHPPVA*CEPILP
Trigger: AGGAAGAATGGGCTCACACCAAGCAACTGGTGGATG...AGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp CCACCGCTGGTCCTTGGGCATTTACCAATGAAGACAGATTTTGGCCTGGCTGTGAGTTCTCCATTTTCTTaGCCCTGCGCTCCAGTCCCT +
Preference number: 4 (lower is better)
Translates to: PPLVLGHLPMKTDFGLAVSSPFS*PCAPVP
Trigger: AGGGACTGGAGCGCAGGGCCAAGAAAATGGAGAACT...CACAGCCAGGCCAAAATCTGTCTTCATTGGTAAATGCCCAAGGACCAGCGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp CAAGGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGGGTGTTCCGTCACTGTaGTACACATCCAGCTCGAAG +
Preference number: 4 (lower is better)
Translates to: QGSEPWQVSIPKWVWLWKGVPSL*YTSSSK
Trigger: CTTCGAGCTGGATGTGTACCACAGTGACGGAACACC...CTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTCAACAGGCTCTTTGTTaGATTGCAGTGAGGAATTCC +
Preference number: 4 (lower is better)
Translates to: GKCPSQSGFGCGSGRSGPQQALC*IAVRNS
Trigger: GGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTG...AGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTTTAGCTTCTCGGACTTaGGGAAGTCCTTTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: GKCPSQSGFGCGSGRSGPLASRT*GSPFQS
Trigger: ACTTTGGAAAGGACTTCCCCAAGTCCGAGAAGCTAA...AGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
3UTR CAA 72 bp TTGAAGCGACCAGAAACCTTCATCAAGGAGGAGGGCTaGAGGAGGCCCAGGGGTTTTACCTGGTCTCCTTTA +
Preference number: 4 (lower is better)
Translates to: LKRPETFIKEEG*RRPRGFTWSPL
Trigger: TAAAGGAGACCAGGTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
CDS-3UTR TCA 90 bp AATCCAGGACAGGAAGGTGGCTCATTAGGGTTTGGCGACATCCTTGGCTCAATGCATCTTGGTGGGCCTTaGAGCGACCAGAAACCTTCA +
Preference number: 4 (lower is better)
Translates to: NPGQEGGSLGFGDILGSMHLGGP*SDQKPS
Trigger: TGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATG...CATTGAGCCAAGGATGTCGCCAAACCCTAATGAGCCACCTTCCTGTCCTGGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp CAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGTGTCAATCATGGACTTaGAATCCAATACACCCTCGA +
Preference number: 4 (lower is better)
Translates to: QVSIPKWVWLWKWQVWAWCQSWT*NPIHPR
Trigger: TCGAGGGTGTATTGGATTTCAAGTCCATGATTGACA...CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp GAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCAAGTCCTTTCCAAAGTaGTGGAACGTCAGCATCATG +
Preference number: 4 (lower is better)
Translates to: EPWQVSIPKWVWLWKWQVKSFPK*WNVSIM
Trigger: CATGATGCTGACGTTCCATCACTTTGGAAAGGACTT...GACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR CCA 90 bp ACAGGTAGAAAATGGCAGGGCCAGACATCTGCCCTGCTTGCCCCTCAGCTGAATTCCCAGGAACTCAACTaGCAGCGTCTCATTGTCAAT +
Preference number: 4 (lower is better)
Translates to: TGRKWQGQTSALLAPQLNSQELN*QRLIVN
Trigger: ATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGA...ATTCAGCTGAGGGGCAAGCAGGGCAGATGTCTGGCCCTGCCATTTTCTACCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp AGGCTGAGGAAAGGAACTCTTCCCGGCTCCTGCTGTGAGAAGGGATGGGCTGGAGTATACTCCATGACATaGTCCACAAGTGCAACTATG +
Preference number: 4 (lower is better)
Translates to: RLRKGTLPGSCCEKGWAGVYSMT*STSATM
Trigger: CATAGTTGCACTTGTGGACCATGTCATGGAGTATAC...TCCAGCCCATCCCTTCTCACAGCAGGAGCCGGGAAGAGTTCCTTTCCTCAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp AAGGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTAGGCACTTTCATACGTaGCACACGCCTGCCCATAGA +
Preference number: 4 (lower is better)
Translates to: KEVSHGKCPSQSGFGCGSRHFHT*HTPAHR
Trigger: TCTATGGGCAGGCGTGTGCCACGTATGAAAGTGCCT...ACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR TCA 90 bp TCCAGTCAGCATCTGTTTGTATTGACTGGGCTGCTAGTGTGTCCCTGCTCCATTTGTCCAGGCACACGGTaGAGATGCTCTTCTGTATGG +
Preference number: 4 (lower is better)
Translates to: SSQHLFVLTGLLVCPCSICPGTR*RCSSVW
Trigger: CCATACAGAAGAGCATCTTCACCGTGTGCCTGGACA...AATGGAGCAGGGACACACTAGCAGCCCAGTCAATACAAACAGATGCTGACTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp TGTGGTGTGAGCCTGGGTGAGCTGAGCTTCAGAGTCTCAAGCCCTTCCCTGCCTGGCTCTTTGTTGGATTaGAGTGAGGAATTCCATATT +
Preference number: 4 (lower is better)
Translates to: CGVSLGELSFRVSSPSLPGSLLD*SEEFHI
Trigger: AATATGGAATTCCTCACTGCAATCCAACAAAGAGCC...AGGCAGGGAAGGGCTTGAGACTCTGAAGCTCAGCTCACCCAGGCTCACACCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp CAGAGTCTCAAGCCCTTCCCTGCCTTACAGATGACTAATGTACTCTTGGGAGCCCATCCACCAGTTGCTTaGTGTGAGCCCATTCTTCCT +
Preference number: 4 (lower is better)
Translates to: QSLKPFPALQMTNVLLGAHPPVA*CEPILP
Trigger: AGGAAGAATGGGCTCACACCAAGCAACTGGTGGATG...GGCTCCCAAGAGTACATTAGTCATCTGTAAGGCAGGGAAGGGCTTGAGACTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAACAGGCTCTTTGTTaGATTGCAGTGAGGAATTCC +
Preference number: 4 (lower is better)
Translates to: GSEPWQVSIPKWVWLWKWQQALC*IAVRNS
Trigger: GGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTG...CCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GGAGTTCAGGTCTTTTCTGTGGCCTGGTCAGAACTAGGATACATCCTGGGGAAACAGCTTCTTGGGCATTaGCAAGGGCACCATAGGAGA +
Preference number: 4 (lower is better)
Translates to: GVQVFSVAWSELGYILGKQLLGH*QGHHRR
Trigger: TCTCCTATGGTGCCCTTGCCAATGCCCAAGAAGCTG...TTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTGAACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp GGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGTTAGCTTCTCGGACTTaGGGAAGTCCTTTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: GSEPWQVSIPKWVWLWKWLASRT*GSPFQS
Trigger: ACTTTGGAAAGGACTTCCCCAAGTCCGAGAAGCTAA...CCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
3UTR CAA 72 bp GGCTGTCCTCCCAGGAACTCAACTGGCAGCGTCTCATaGTCAATCATGGACTTGAAATCCAATACACCCTCG +
Preference number: 4 (lower is better)
Translates to: GCPPRNSTGSVS*SIMDLKSNTPS
Trigger: CGAGGGTGTATTGGATTTCAAGTCCATGATTGACAATGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
CDS-3UTR TCA 90 bp GGAGTTCAGGTCTTTTCTGTGGCCTGGTCAGAACTAGGATACATCCTGGGGAAAAGCTGCACAAAGATCTaGTCTGAGGTGAGCGGTGTT +
Preference number: 4 (lower is better)
Translates to: GVQVFSVAWSELGYILGKSCTKI*SEVSGV
Trigger: AACACCGCTCACCTCAGATCAGATCTTTGTGCAGCT...TTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTGAACTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp TGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGCACTGCATTTGTTGGATTGCAGTaGGGAATTCCATATTTTCTC +
Preference number: 4 (lower is better)
Translates to: CTWLWAEECLPPQIHSTAFVGLQ*GIPYFL
Trigger: GAGAAAATATGGAATTCCTCACTGCAATCCAACAAA...TGCAGTGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp AGAACTAGGATACATCCTGGGGAAATCTGGTTAGCCCCTGCTAGCACCCTGACTAAGTCCTTTCCAAAGTaGTGGAACGTCAGCATCATG +
Preference number: 4 (lower is better)
Translates to: RTRIHPGEIWLAPASTLTKSFPK*WNVSIM
Trigger: CATGATGCTGACGTTCCATCACTTTGGAAAGGACTT...AGTCAGGGTGCTAGCAGGGGCTAACCAGATTTCCCCAGGATGTATCCTAGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp TGGGCTCAGTTTATTAGCACAACCATGGGATTTGATTGTCTCCTTGTTTCAGTCTGCCAACCCAGTGTCTaGCAGGGCAGTCCAGTTCAC +
Preference number: 4 (lower is better)
Translates to: WAQFISTTMGFDCLLVSVCQPSV*QGSPVH
Trigger: GTGAACTGGACTGCCCTGTCAGACACTGGGTTGGCA...GACTGAAACAAGGAGACAATCAAATCCCATGGTTGTGCTAATAAACTGAGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142096.2
CDS-3UTR CCA 90 bp AGAACTAGGATACATCCTGGGGAAATCTGGTTAGCCCCTGCTAGCACCCTGACTTTAGCTTCTCGGACTTaGGGAAGTCCTTTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: RTRIHPGEIWLAPASTLTLASRT*GSPFQS
Trigger: ACTTTGGAAAGGACTTCCCCAAGTCCGAGAAGCTAA...AGTCAGGGTGCTAGCAGGGGCTAACCAGATTTCCCCAGGATGTATCCTAGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp ACAACCATGGGATTTGATTGTCTCCTTGTTTCAGTCTCCCTAGCATTAAAATGCGAAGGCGGGACGACTTaGAGGAGGGTCTCAGGTGCT +
Preference number: 4 (lower is better)
Translates to: TTMGFDCLLVSVSLALKCEGGTT*RRVSGA
Trigger: AGCACCTGAGACCCTCCTCCAAGTCGTCCCGCCTTC...GCATTTTAATGCTAGGGAGACTGAAACAAGGAGACAATCAAATCCCATGGTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142096.2
CDS-3UTR TCA 90 bp AAGGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTTGTCAATCATGGACTTaGAATCCAATACACCCTCGA +
Preference number: 4 (lower is better)
Translates to: KEVSHGKCPSQSGFGCGSCQSWT*NPIHPR
Trigger: TCGAGGGTGTATTGGATTTCAAGTCCATGATTGACA...ACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CCA 90 bp AATCCAGGACAGGAAGGTGGCTCATTAGGGTTTGGCGACATCCTTGGCTCAATGGTATACTCCATGACATaGTCCACAAGTGCAACTATG +
Preference number: 4 (lower is better)
Translates to: NPGQEGGSLGFGDILGSMVYSMT*STSATM
Trigger: CATAGTTGCACTTGTGGACCATGTCATGGAGTATAC...CATTGAGCCAAGGATGTCGCCAAACCCTAATGAGCCACCTTCCTGTCCTGGATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
3UTR CAA 72 bp AAGCCCTTCCCTGCCTTACAGATGACTAATGTACTCTaGGGAGCCTGTCATTTAGTAGCAGTGACGTTAGCT +
Preference number: 4 (lower is better)
Translates to: KPFPALQMTNVL*GACHLVAVTLA
Trigger: AGCTAACGTCACTGCTACTAAATGACAGGCTCCCAAGAGTACATTAGTCATCTGTAAGGCAGGGAAGGGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR TCA 90 bp CAGAGTCTCAAGCCCTTCCCTGCCTTACAGATGACTAATGTACTCTTGGGAGCCTTTGTTGGATTGCAGTaGGGAATTCCATATTTTCTC +
Preference number: 4 (lower is better)
Translates to: QSLKPFPALQMTNVLLGAFVGLQ*GIPYFL
Trigger: GAGAAAATATGGAATTCCTCACTGCAATCCAACAAA...GGCTCCCAAGAGTACATTAGTCATCTGTAAGGCAGGGAAGGGCTTGAGACTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR GCA 90 bp GGAGATACACACTTACATGTGGGAAGCCTGCTGAAGCAGTTGGATTATAACTTCGGCTCTTTGTTGGATTaGAGTGAGGAATTCCATATT +
Preference number: 4 (lower is better)
Translates to: GDTHLHVGSLLKQLDYNFGSLLD*SEEFHI
Trigger: AATATGGAATTCCTCACTGCAATCCAACAAAGAGCC...GAAGTTATAATCCAACTGCTTCAGCAGGCTTCCCACATGTAAGTGTGTATCTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
CDS CCA 90 bp GCAGCTTCAGACCCAGCAGGTGCCGGTCAAAGGCCTCCCCTCGGATaGCCTGTGGGTGGGAGATCCGGTCAGTGTAGGCTCGGTGGGCCT +
Preference number: 5 (lower is better)
Translates to: AASDPAGAGQRPPLG*PVGGRSGQCRLGGP
Trigger: AGGCCCACCGAGCCTACACTGACCGGATCTCCCACCCACAGGCCATCCGAGGGGAGGCCTTTGACCGGCACCTGCTGGGTCTGAAGCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154595.2
CDS GCA 90 bp GCTCGGTGGGCCTGCACAGCCTTCCGGAGCAGCTCCACCTTCTGCTaGTCCGGCACTGTGGAGTCACCCATGCCTTTGACAAAGGCCAGC +
Preference number: 5 (lower is better)
Translates to: ARWACTAFRSSSTFC*SGTVESPMPLTKAS
Trigger: GCTGGCCTTTGTCAAAGGCATGGGTGACTCCACAGTGCCGGAGCAGCAGAAGGTGGAGCTGCTCCGGAAGGCTGTGCAGGCCCACCGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS GCA 90 bp ATGCTGACCAGGTCCTCGATGGCCTGCAGCTTCAGACCCAGCAGGTaGCGGTCAAAGGCCTCCCCTCGGATGGCCTGTGGGTGGGAGATC +
Preference number: 5 (lower is better)
Translates to: MLTRSSMACSFRPSR*RSKASPRMACGWEI
Trigger: GATCTCCCACCCACAGGCCATCCGAGGGGAGGCCTTTGACCGGCACCTGCTGGGTCTGAAGCTGCAGGCCATCGAGGACCTGGTCAGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154595.2
CDS CCA 90 bp GTTTTCTTGACCGTTGCTGGAGGCCCGCCCGTCTTGTCCCGTCCATaGCCCTGCTGGGCGAACTCACCACGGTTCTGGCAGCAAAGGCTA +
Preference number: 5 (lower is better)
Translates to: VFLTVAGGPPVLSRP*PCWANSPRFWQQRL
Trigger: TAGCCTTTGCTGCCAGAACCGTGGTGAGTTCGCCCAGCAGGGCCATGGACGGGACAAGACGGGCGGGCCTCCAGCAACGGTCAAGAAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
CDS-3UTR CAA 90 bp CATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGACCACTGAGTCCTGCTaGGGGCCGGGCACACGGCAA +
Preference number: 5 (lower is better)
Translates to: HGKCPSQSGFGCGSGRSGTTESC*GPGTRQ
Trigger: TTGCCGTGTGCCCGGCCCCAAGCAGGACTCAGTGGT...CCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp GCACATGGACTCCGGCAGGTGCTAAGGACAGGGCCTGGAAGGCACTTGGTGTGGTTGAACCGCAGCTTCTaGGGCATTGGCAAGGGCACC +
Preference number: 5 (lower is better)
Translates to: AHGLRQVLRTGPGRHLVWLNRSF*GIGKGT
Trigger: GGTGCCCTTGCCAATGCCCAAGAAGCTGCGGTTCAA...CCACACCAAGTGCCTTCCAGGCCCTGTCCTTAGCACCTGCCGGAGTCCATGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS TCA 90 bp GCTCCACCTTCTGCTGCTCCGGCACTGTGGAGTCACCCATGCCTTTaGCAAAGGCCAGCGAGTCTATGGAGGCTGAGCGGATGGTGTCAG +
Preference number: 5 (lower is better)
Translates to: APPSAAPALWSHPCL*QRPASLWRLSGWCQ
Trigger: CTGACACCATCCGCTCAGCCTCCATAGACTCGCTGGCCTTTGTCAAAGGCATGGGTGACTCCACAGTGCCGGAGCAGCAGAAGGTGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR CAA 90 bp AGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGACCACTGAGTCCTGCTaGGGGCCGGGCACACGGCAA +
Preference number: 5 (lower is better)
Translates to: SEPWQVSIPKWVWLWKWQTTESC*GPGTRQ
Trigger: TTGCCGTGTGCCCGGCCCCAAGCAGGACTCAGTGGT...CTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp ATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCGCCATGCGGGCAGCGTaGGTCTCAGCACAGCTGTTG +
Preference number: 5 (lower is better)
Translates to: MASVHPKVGLAVEVAGLGAMRAA*VSAQLL
Trigger: CAACAGCTGTGCTGAGACCAACGCTGCCCGCATGGC...GCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS GCA 90 bp GTAGGGTGCGCATGTCCAGCAGAGCTTTCTCCAAGTAGTGAGCCATaGGGGCAGCGTTGGTCTCAGCACAGCTGTTGTAGGCTGACACGG +
Preference number: 5 (lower is better)
Translates to: VGCACPAELSPSSEP*GQRWSQHSCCRLTR
Trigger: CCGTGTCAGCCTACAACAGCTGTGCTGAGACCAACGCTGCCCGCATGGCTCACTACTTGGAGAAAGCTCTGCTGGACATGCGCACCCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR CAA 90 bp AAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGGATCAAGGAGGAGGGCTaGAGGAGGCCCAGGGGTTTT +
Preference number: 5 (lower is better)
Translates to: KCPSQSGFGCGSGRSGPGIKEEG*RRPRGF
Trigger: AAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGAT...CCCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CTCCGGCAGGTGCTAAGGACAGGGCCTGGAAGGCACTTGGTGTGGACGTTGGGGATGAACTGCAGTGTCTaGTCAAACCAGCGGTTGCCA +
Preference number: 5 (lower is better)
Translates to: LRQVLRTGPGRHLVWTLGMNCSV*SNQRLP
Trigger: TGGCAACCGCTGGTTTGACAAGACACTGCAGTTCAT...CCCCAACGTCCACACCAAGTGCCTTCCAGGCCCTGTCCTTAGCACCTGCCGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp GGGAGCTTGCTGGCCCACACTGCCTGCTTGGATACAAGCTCCCTGAACCAGAGATTGAACCGCAGCTTCTaGGGCATTGGCAAGGGCACC +
Preference number: 5 (lower is better)
Translates to: GSLLAHTACLDTSSLNQRLNRSF*GIGKGT
Trigger: GGTGCCCTTGCCAATGCCCAAGAAGCTGCGGTTCAA...TCTCTGGTTCAGGGAGCTTGTATCCAAGCAGGCAGTGTGGGCCAGCAAGCTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp GAGGTAGTTTCATCCTATGTTGCAGGCCCTGCCTCAGGTGACCACAGGTCAGTCGCCATGCGGGCAGCGTaGGTCTCAGCACAGCTGTTG +
Preference number: 5 (lower is better)
Translates to: EVVSSYVAGPASGDHRSVAMRAA*VSAQLL
Trigger: CAACAGCTGTGCTGAGACCAACGCTGCCCGCATGGC...GACTGACCTGTGGTCACCTGAGGCAGGGCCTGCAACATAGGATGAAACTACCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGATCAAGGAGGAGGGCTaGAGGAGGCCCAGGGGTTTT +
Preference number: 5 (lower is better)
Translates to: HGKCPSQSGFGCGSGRSGIKEEG*RRPRGF
Trigger: AAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGAT...CCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp AGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTCCTTGGCAGTGCATCTaGGTGGGCCTTGAAGCGACC +
Preference number: 5 (lower is better)
Translates to: SHGKCPSQSGFGCGSGRSPWQCI*VGLEAT
Trigger: GGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGG...AGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CAGAGTCTCAAGCCCTTCCCTGCCTTACAGATGACTAATGTACTCTTGGGAGCCGGGGCACAGGCAGCCTaGGCAGTGCATCTTGGTGGG +
Preference number: 5 (lower is better)
Translates to: QSLKPFPALQMTNVLLGAGAQAA*AVHLGG
Trigger: CCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCC...GGCTCCCAAGAGTACATTAGTCATCTGTAAGGCAGGGAAGGGCTTGAGACTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp GCACATGGACTCCGGCAGGTGCTAAGGACAGGGCCTGGAAGGCACTTGGTGTGGAAACTCATCCACCAGTaGCTTGGTGTGAGCCCATTC +
Preference number: 5 (lower is better)
Translates to: AHGLRQVLRTGPGRHLVWKLIHQ*LGVSPF
Trigger: GAATGGGCTCACACCAAGCAACTGGTGGATGAGTTT...CCACACCAAGTGCCTTCCAGGCCCTGTCCTTAGCACCTGCCGGAGTCCATGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp TGTGGTGTGAGCCTGGGTGAGCTGAGCTTCAGAGTCTCAAGCCCTTCCCTGCCTACTCTAGGCACTTGCTaGTCCAGGCACACGGTGAAG +
Preference number: 5 (lower is better)
Translates to: CGVSLGELSFRVSSPSLPTLGTC*SRHTVK
Trigger: CTTCACCGTGTGCCTGGACAAGCAAGTGCCTAGAGT...AGGCAGGGAAGGGCTTGAGACTCTGAAGCTCAGCTCACCCAGGCTCACACCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp GTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCTTGCTGGCCCACACTGCCTGGCTGGTAGAGAGGTaGAAGTGCATAGCAATGGCG +
Preference number: 5 (lower is better)
Translates to: VTAQPEDVVSGSLLAHTAWLVER*KCIAMA
Trigger: CGCCATTGCTATGCACTTCAACCTCTCTACCAGCCA...GGCAGTGTGGGCCAGCAAGCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp GTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGGCTGACACGGAGAAGTaGATATGGGCCTCCATGGGG +
Preference number: 5 (lower is better)
Translates to: VSHGKCPSQSGFGCGSGRADTEK*IWASMG
Trigger: CCCCATGGAGGCCCATATCAACTTCTCCGTGTCAGC...CCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS TCA 90 bp GTGAGCCATGCGGGCAGCGTTGGTCTCAGCACAGCTGTTGTAGGCTaGCACGGAGAAGTTGATATGGGCCTCCATGGGGTTGTAGCAGAT +
Preference number: 5 (lower is better)
Translates to: VSHAGSVGLSTAVVG*HGEVDMGLHGVVAD
Trigger: ATCTGCTACAACCCCATGGAGGCCCATATCAACTTCTCCGTGTCAGCCTACAACAGCTGTGCTGAGACCAACGCTGCCCGCATGGCTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000154595.2
ENSMUST00000155790.8
CDS CCA 90 bp TATGCAGTAAGGTGGTCCCAGAGGGTGACGGAAGGCGGGACGACTTaGAGGAGGGTCTCAGGTGCTGCCAGGACTCTTAGTAGAATCTCA +
Preference number: 5 (lower is better)
Translates to: YAVRWSQRVTEGGTT*RRVSGAARTLSRIS
Trigger: TGAGATTCTACTAAGAGTCCTGGCAGCACCTGAGACCCTCCTCCAAGTCGTCCCGCCTTCCGTCACCCTCTGGGACCACCTTACTGCATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142096.2
CDS-3UTR CAA 90 bp TGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGCACTGCAACTCTAGGCACTTGCTaGTCCAGGCACACGGTGAAG +
Preference number: 5 (lower is better)
Translates to: CTWLWAEECLPPQIHSTATLGTC*SRHTVK
Trigger: CTTCACCGTGTGCCTGGACAAGCAAGTGCCTAGAGT...TGCAGTGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp GTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCTTGCTGGCCCACACTGCCCTTAGCTTCTCGGACTaGGGGAAGTCCTTTCCAAAG +
Preference number: 5 (lower is better)
Translates to: VTAQPEDVVSGSLLAHTALSFSD*GKSFPK
Trigger: CTTTGGAAAGGACTTCCCCAAGTCCGAGAAGCTAAG...GGCAGTGTGGGCCAGCAAGCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGTGGCTGGTAGAGAGGTaGAAGTGCATAGCAATGGCG +
Preference number: 5 (lower is better)
Translates to: QVSIPKWVWLWKWQVWAWWLVER*KCIAMA
Trigger: CGCCATTGCTATGCACTTCAACCTCTCTACCAGCCA...CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp TGCACCTGGCTTTGGGCTGAGGAGTGTTTGCCACCCCAGATCCATAGCACTGCAATGACACAGTCTGTCTaGGCAGGGACCTGGCTGGTA +
Preference number: 5 (lower is better)
Translates to: CTWLWAEECLPPQIHSTAMTQSV*AGTWLV
Trigger: TACCAGCCAGGTCCCTGCCAAGACAGACTGTGTCAT...TGCAGTGCTATGGATCTGGGGTGGCAAACACTCCTCAGCCCAAAGCCAGGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp AGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGCTGACACGGAGAAGTaGATATGGGCCTCCATGGGG +
Preference number: 5 (lower is better)
Translates to: SHGKCPSQSGFGCGSGRSADTEK*IWASMG
Trigger: CCCCATGGAGGCCCATATCAACTTCTCCGTGTCAGC...AGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR CAA 90 bp GTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGATCTCAGGTGTGATGTaGAACCGCAGCTTCTTGGGC +
Preference number: 5 (lower is better)
Translates to: VSHGKCPSQSGFGCGSGRISGVM*NRSFLG
Trigger: GCCCAAGAAGCTGCGGTTCAACATCACACCTGAGAT...CCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp GAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCATCTCAGGTGTGATGTaGAACCGCAGCTTCTTGGGC +
Preference number: 5 (lower is better)
Translates to: EPWQVSIPKWVWLWKWQVISGVM*NRSFLG
Trigger: GCCCAAGAAGCTGCGGTTCAACATCACACCTGAGAT...GACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGGCCTGGCTTAGCTTCTCGGACTaGGGGAAGTCCTTTCCAAAG +
Preference number: 5 (lower is better)
Translates to: QVSIPKWVWLWKWQVWAWLSFSD*GKSFPK
Trigger: CTTTGGAAAGGACTTCCCCAAGTCCGAGAAGCTAAG...CCAGGCCCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR CAA 90 bp GAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCGAGTCACCCATGCCTTaGACAAAGGCCAGCGAGTCT +
Preference number: 5 (lower is better)
Translates to: EVSHGKCPSQSGFGCGSGESPMP*TKASES
Trigger: AGACTCGCTGGCCTTTGTCAAAGGCATGGGTGACTC...GCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR CAA 90 bp AGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGAGTCACCCATGCCTTaGACAAAGGCCAGCGAGTCT +
Preference number: 5 (lower is better)
Translates to: SEPWQVSIPKWVWLWKWQESPMP*TKASES
Trigger: AGACTCGCTGGCCTTTGTCAAAGGCATGGGTGACTC...CTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS-3UTR CAA 90 bp CAAGGAAGTGAGCCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGATGACACAGTCTGTCTaGGCAGGGACCAGGTCCTCG +
Preference number: 5 (lower is better)
Translates to: QGSEPWQVSIPKWVWLWKMTQSV*AGTRSS
Trigger: CGAGGACCTGGTCCCTGCCAAGACAGACTGTGTCAT...CTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGGCTCACTTCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155790.8
CDS-3UTR CAA 90 bp CAGGTCTTTTCTGTGGCCTGGTCAGAACTAGGATACATCCTGGGGAAATCTGGTCCTTGGCAGTGCATCTaGGTGGGCCTTGAAGCGACC +
Preference number: 5 (lower is better)
Translates to: QVFSVAWSELGYILGKSGPWQCI*VGLEAT
Trigger: GGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGG...ACCAGATTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp TGGCTCAATGCCTTAGTTGTCACAGCTCAGCCTGAGGATGTTGTCTCTGGGAGCGAGTCACCCATGCCTTaGACAAAGGCCAGCGAGTCT +
Preference number: 5 (lower is better)
Translates to: WLNALVVTAQPEDVVSGSESPMP*TKASES
Trigger: AGACTCGCTGGCCTTTGTCAAAGGCATGGGTGACTC...GCTCCCAGAGACAACATCCTCAGGCTGAGCTGTGACAACTAAGGCATTGAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS TCA 90 bp CAGCGTTGGTCTCAGCACAGCTGTTGTAGGCTGACACGGAGAAGTTaGTATGGGCCTCCATGGGGTTGTAGCAGATGCCATAACCATCTG +
Preference number: 5 (lower is better)
Translates to: QRWSQHSCCRLTRRS*YGPPWGCSRCHNHL
Trigger: CAGATGGTTATGGCATCTGCTACAACCCCATGGAGGCCCATATCAACTTCTCCGTGTCAGCCTACAACAGCTGTGCTGAGACCAACGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000154595.2
ENSMUST00000155790.8
CDS-3UTR CAA 90 bp GCAATAAGTCTGGGGCTCAAGAGTCACCAGAGTGTGGCAGCAGGGAGATGGCACCCAACAGGCTCTTTGTaGGATTGCAGTGAGGAATTC +
Preference number: 5 (lower is better)
Translates to: AISLGLKSHQSVAAGRWHPTGSL*DCSEEF
Trigger: GAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGG...GTGCCATCTCCCTGCTGCCACACTCTGGTGACTCTTGAGCCCCAGACTTATTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CAGGTCTTTTCTGTGGCCTGGTCAGAACTAGGATACATCCTGGGGAAATCTGGTGCTGACACGGAGAAGTaGATATGGGCCTCCATGGGG +
Preference number: 5 (lower is better)
Translates to: QVFSVAWSELGYILGKSGADTEK*IWASMG
Trigger: CCCCATGGAGGCCCATATCAACTTCTCCGTGTCAGC...ACCAGATTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CTGGTCCTTGGGCATTTACCAATGAAGACAGATTTTGGCCTGGCTGTGGAGATGGTAATAGTCCAGGGATaGCTGAAGTGGGGGCACAGG +
Preference number: 5 (lower is better)
Translates to: LVLGHLPMKTDFGLAVEMVIVQG*LKWGHR
Trigger: CCTGTGCCCCCACTTCAGCAATCCCTGGACTATTAC...CATCTCCACAGCCAGGCCAAAATCTGTCTTCATTGGTAAATGCCCAAGGACCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp ATGGAAGCAATAAGTCTGGGGCTCAAGAGTCACCAGAGTGTGGCAGCAGGGAGAAAACTCATCCACCAGTaGCTTGGTGTGAGCCCATTC +
Preference number: 5 (lower is better)
Translates to: MEAISLGLKSHQSVAAGRKLIHQ*LGVSPF
Trigger: GAATGGGCTCACACCAAGCAACTGGTGGATGAGTTT...TCTCCCTGCTGCCACACTCTGGTGACTCTTGAGCCCCAGACTTATTGCTTCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp AGGCTGAGGAAAGGAACTCTTCCCGGCTCCTGCTGTGAGAAGGGATGGGCTGGATTCTCTATGTCGTTCTaGATCTCAGGTGTGATGTTG +
Preference number: 5 (lower is better)
Translates to: RLRKGTLPGSCCEKGWAGFSMSF*ISGVML
Trigger: CAACATCACACCTGAGATCAAGAACGACATAGAGAA...TCCAGCCCATCCCTTCTCACAGCAGGAGCCGGGAAGAGTTCCTTTCCTCAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS CCA 90 bp TGGGTGGTCTCTTTGACTTTAAGAAGTTCACCACTGAGTCCTGCTTaGGGCCGGGCACACGGCAAGAAGACAGGATCTGATAATACTGGT +
Preference number: 5 (lower is better)
Translates to: WVVSLTLRSSPLSPA*GRAHGKKTGSDNTG
Trigger: ACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTGCCCGGCCCCAAGCAGGACTCAGTGGTGAACTTCTTAAAGTCAAAGAGACCACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000132981.9
CDS-3UTR CAA 90 bp TCCAACTCCACATGCATTGTCTGCCTCAGTGAGGAGACTTCTGCCTTAGAAGAAGTAATAGTCCAGGGATaGCTGAAGTGGGGGCACAGG +
Preference number: 5 (lower is better)
Translates to: SNSTCIVCLSEETSALEEVIVQG*LKWGHR
Trigger: CCTGTGCCCCCACTTCAGCAATCCCTGGACTATTAC...TTCTTCTAAGGCAGAAGTCTCCTCACTGAGGCAGACAATGCATGTGGAGTTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp ACTTGGTGTGGACGTTGGGGCCTTGCTAGAGAATGCTTTTCTGGCTCAAACTGGATGAACTGCAGTGTCTaGTCAAACCAGCGGTTGCCA +
Preference number: 5 (lower is better)
Translates to: TWCGRWGLARECFSGSNWMNCSV*SNQRLP
Trigger: TGGCAACCGCTGGTTTGACAAGACACTGCAGTTCAT...CCAGTTTGAGCCAGAAAAGCATTCTCTAGCAAGGCCCCAACGTCCACACCAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CCATGGCAAGTGTCCATCCCAAAGTGGGTTTGGCTGTGGAAGTGGCAGGTCTGGTTCTCTATGTCGTTCTaGATCTCAGGTGTGATGTTG +
Preference number: 5 (lower is better)
Translates to: PWQVSIPKWVWLWKWQVWFSMSF*ISGVML
Trigger: CAACATCACACCTGAGATCAAGAACGACATAGAGAA...CCAGACCTGCCACTTCCACAGCCAAACCCACTTTGGGATGGACACTTGCCATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp AGATGTCCCTTTGGCTACAAAGACTTAACCCTTAGCTATGGGGAGGTTGAGAGCATGACACAGTCTGTCTaGGCAGGGACCTGGCTGGTA +
Preference number: 5 (lower is better)
Translates to: RCPFGYKDLTLSYGEVESMTQSV*AGTWLV
Trigger: TACCAGCCAGGTCCCTGCCAAGACAGACTGTGTCAT...GCTCTCAACCTCCCCATAGCTAAGGGTTAAGTCTTTGTAGCCAAAGGGACATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS GCA 90 bp TGTTGTAGGCCTTGGCCCAGGTGTTTCGGTGGTTGGAGGTTAGGATaGCAACAGGCTCTTTGTTGGATTGCAGTGAGGAATTCCATATTT +
Preference number: 5 (lower is better)
Translates to: CCRPWPRCFGGWRLG*QQALCWIAVRNSIF
Trigger: AAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCGAAACACCTGGGCCAAGGCCTACAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS TCA 90 bp GATTGCAGTGAGGAATTCCATATTTTCTCTAGCTGCACAAAGATCTaGTCTGAGGTGAGCGGTGTTCCGTCACTGTGGTACACATCCAGC +
Preference number: 5 (lower is better)
Translates to: DCSEEFHIFSSCTKI*SEVSGVPSLWYTSS
Trigger: GCTGGATGTGTACCACAGTGACGGAACACCGCTCACCTCAGATCAGATCTTTGTGCAGCTAGAGAAAATATGGAATTCCTCACTGCAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp TCCAACTCCACATGCATTGTCTGCCTCAGTGAGGAGACTTCTGCCTTAGAAGAACCAACAGGCTCTTTGTaGGATTGCAGTGAGGAATTC +
Preference number: 5 (lower is better)
Translates to: SNSTCIVCLSEETSALEEPTGSL*DCSEEF
Trigger: GAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGG...TTCTTCTAAGGCAGAAGTCTCCTCACTGAGGCAGACAATGCATGTGGAGTTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CTGGTCCTTGGGCATTTACCAATGAAGACAGATTTTGGCCTGGCTGTGGAGATGATGCTGAGGTTCTGTTaGGCTTTCTCTATGTCGTTC +
Preference number: 5 (lower is better)
Translates to: LVLGHLPMKTDFGLAVEMMLRFC*AFSMSF
Trigger: GAACGACATAGAGAAAGCCAAACAGAACCTCAGCAT...CATCTCCACAGCCAGGCCAAAATCTGTCTTCATTGGTAAATGCCCAAGGACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp CAGGTCTTTTCTGTGGCCTGGTCAGAACTAGGATACATCCTGGGGAAATCTGGTATGCTGAGGTTCTGTTaGGCTTTCTCTATGTCGTTC +
Preference number: 5 (lower is better)
Translates to: QVFSVAWSELGYILGKSGMLRFC*AFSMSF
Trigger: GAACGACATAGAGAAAGCCAAACAGAACCTCAGCAT...ACCAGATTTCCCCAGGATGTATCCTAGTTCTGACCAGGCCACAGAAAAGACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS TCA 90 bp AGGAATTCCATATTTTCTCTAGCTGCACAAAGATCTGATCTGAGGTaGGCGGTGTTCCGTCACTGTGGTACACATCCAGCTCGAAGAACT +
Preference number: 5 (lower is better)
Translates to: RNSIFSLAAQRSDLR*AVFRHCGTHPARRT
Trigger: AGTTCTTCGAGCTGGATGTGTACCACAGTGACGGAACACCGCTCACCTCAGATCAGATCTTTGTGCAGCTAGAGAAAATATGGAATTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS TCA 90 bp CTTGTCCAGGCACACGGTGAAGATGCTCTTCTGTATGGAGTTCACTaGCTCTCGGTTAACTTTGTCTTTAATGAGGTTGTTGTAGGCCTT +
Preference number: 5 (lower is better)
Translates to: LVQAHGEDALLYGVH*LSVNFVFNEVVVGL
Trigger: AAGGCCTACAACAACCTCATTAAAGACAAAGTTAACCGAGAGTCAGTGAACTCCATACAGAAGAGCATCTTCACCGTGTGCCTGGACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CCA 90 bp AGGTGTTTCGGTGGTTGGAGGTTAGGATGCCAACAGGCTCTTTGTTaGATTGCAGTGAGGAATTCCATATTTTCTCTAGCTGCACAAAGA +
Preference number: 5 (lower is better)
Translates to: RCFGGWRLGCQQALC*IAVRNSIFSLAAQR
Trigger: TCTTTGTGCAGCTAGAGAAAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCGAAACACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS-3UTR CAA 90 bp TATATGGGAGATACACACTTACATGTGGGAAGCCTGCTGAAGCAGTTGGATTATCTTAGCTTCTCGGACTaGGGGAAGTCCTTTCCAAAG +
Preference number: 5 (lower is better)
Translates to: YMGDTHLHVGSLLKQLDYLSFSD*GKSFPK
Trigger: CTTTGGAAAGGACTTCCCCAAGTCCGAGAAGCTAAG...ATAATCCAACTGCTTCAGCAGGCTTCCCACATGTAAGTGTGTATCTCCCATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102855.8
CDS GCA 72 bp GCTGGAGGCCCGCCCGTCTTGTCCCGTCCATGGCCCTaGTGGGCGAACTCACCACGGTTCTGGCAGCAAAGG +
Preference number: 6 (lower is better)
Translates to: AGGPPVLSRPWP*WANSPRFWQQR
Trigger: CCTTTGCTGCCAGAACCGTGGTGAGTTCGCCCAGCAGGGCCATGGACGGGACAAGACGGGCGGGCCTCCAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
CDS CCA 72 bp ACCGTTGCTGGAGGCCCGCCCGTCTTGTCCCGTCCATaGCCCTGCTGGGCGAACTCACCACGGTTCTGGCAG +
Preference number: 6 (lower is better)
Translates to: TVAGGPPVLSRP*PCWANSPRFWQ
Trigger: CTGCCAGAACCGTGGTGAGTTCGCCCAGCAGGGCCATGGACGGGACAAGACGGGCGGGCCTCCAGCAACGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
CDS GCA 72 bp AGGTCCTCGATGGCCTGCAGCTTCAGACCCAGCAGGTaGCGGTCAAAGGCCTCCCCTCGGATGGCCCGGTCA +
Preference number: 6 (lower is better)
Translates to: RSSMACSFRPSR*RSKASPRMARS
Trigger: TGACCGGGCCATCCGAGGGGAGGCCTTTGACCGGCACCTGCTGGGTCTGAAGCTGCAGGCCATCGAGGACCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS GCA 72 bp AGGTCCTCGATGGCCTGCAGCTTCAGACCCAGCAGGTaGCGGTCAAAGGCCTCCCCTCGGATGGCCTGTGGG +
Preference number: 6 (lower is better)
Translates to: RSSMACSFRPSR*RSKASPRMACG
Trigger: CCCACAGGCCATCCGAGGGGAGGCCTTTGACCGGCACCTGCTGGGTCTGAAGCTGCAGGCCATCGAGGACCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154595.2
CDS CCA 72 bp GACCCAGCAGGTGCCGGTCAAAGGCCTCCCCTCGGATaGCCTGTGGGTGGGAGATCCGGTCAGTGTAGGCTC +
Preference number: 6 (lower is better)
Translates to: DPAGAGQRPPLG*PVGGRSGQCRL
Trigger: GAGCCTACACTGACCGGATCTCCCACCCACAGGCCATCCGAGGGGAGGCCTTTGACCGGCACCTGCTGGGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154595.2
CDS CCA 72 bp GGAGGCCCGCCCGTCTTGTCCCGTCCATGGCCCTGCTaGGCGAACTCACCACGGTTCTGGCAGCAAAGGCTA +
Preference number: 6 (lower is better)
Translates to: GGPPVLSRPWPC*ANSPRFWQQRL
Trigger: TAGCCTTTGCTGCCAGAACCGTGGTGAGTTCGCCCAGCAGGGCCATGGACGGGACAAGACGGGCGGGCCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
CDS CAA 72 bp GGGGTTTTCTTGACCGTTGCTGGAGGCCCGCCCGTCTaGTCCCGTCCATGGCCCTGCTGGGCGAACTCACCA +
Preference number: 6 (lower is better)
Translates to: GVFLTVAGGPPV*SRPWPCWANSP
Trigger: TGGTGAGTTCGCCCAGCAGGGCCATGGACGGGACAAGACGGGCGGGCCTCCAGCAACGGTCAAGAAAACCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156702.2
CDS GCA 72 bp TGGGCCTGCACAGCCTTCCGGAGCAGCTCCACCTTCTaGTGCTCCGGCACTGTGGAGTCACCCATGCCTTTG +
Preference number: 6 (lower is better)
Translates to: WACTAFRSSSTF*CSGTVESPMPL
Trigger: CAAAGGCATGGGTGACTCCACAGTGCCGGAGCAGCAGAAGGTGGAGCTGCTCCGGAAGGCTGTGCAGGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS CCA 72 bp AGGTGGTCCCAGAGGGTGACGGAAGGCGGGACGACTTaGAGGAGGGTCTCAGGTGCTGCCAGGACTCTTAGT +
Preference number: 6 (lower is better)
Translates to: RWSQRVTEGGTT*RRVSGAARTLS
Trigger: ACTAAGAGTCCTGGCAGCACCTGAGACCCTCCTCCAAGTCGTCCCGCCTTCCGTCACCCTCTGGGACCACCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142096.2
CDS TCA 72 bp TCTGCTGCTCCGGCACTGTGGAGTCACCCATGCCTTTaGCAAAGGCCAGCGAGTCTATGGAGGCTGAGCGGA +
Preference number: 6 (lower is better)
Translates to: SAAPALWSHPCL*QRPASLWRLSG
Trigger: TCCGCTCAGCCTCCATAGACTCGCTGGCCTTTGTCAAAGGCATGGGTGACTCCACAGTGCCGGAGCAGCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS GCA 72 bp CCAGCGAGTCTATGGAGGCTGAGCGGATGGTGTCAGTaGGGCCCAGGTGAAACATGCGCAGAGAGGCACTTT +
Preference number: 6 (lower is better)
Translates to: PASLWRLSGWCQ*GPGETCAERHF
Trigger: AAAGTGCCTCTCTGCGCATGTTTCACCTGGGCCGCACTGACACCATCCGCTCAGCCTCCATAGACTCGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS CAA 90 bp AGCTCCACCTTCTGCTGCTCCGGCACTGTGGAGTCACCCATGCCTTaGACAAAGGCCAGCGAGTCTATGGAGGCTGAGCGGATGGTGTCA +
Preference number: 6 (lower is better)
Translates to: SSTFCCSGTVESPMP*TKASESMEAERMVS
Trigger: TGACACCATCCGCTCAGCCTCCATAGACTCGCTGGCCTTTGTCAAAGGCATGGGTGACTCCACAGTGCCGGAGCAGCAGAAGGTGGAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS CAA 90 bp TGGTGGGCCTTGAAGCGACCAGAAACCTTCATCAAGGAGGAGGGCTaGAGGAGGCCCAGGGGTTTTACCACGGTTCTGGCAGCAAAGGCT +
Preference number: 6 (lower is better)
Translates to: WWALKRPETFIKEEG*RRPRGFTTVLAAKA
Trigger: AGCCTTTGCTGCCAGAACCGTGGTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS CAA 90 bp TGGTGGGCCTTGAAGCGACCAGAAACCTTCATCAAGGAGGAGGGCTaGAGGAGGCCCAGGGGTTTTACCTTCTCTCTCTGCTGCTCGTCC +
Preference number: 6 (lower is better)
Translates to: WWALKRPETFIKEEG*RRPRGFTFSLCCSS
Trigger: GGACGAGCAGCAGAGAGAGAAGGTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000132981.9
ENSMUST00000134120.2
CDS GCA 72 bp GCATGTCCAGCAGAGCTTTCTCCAAGTAGTGAGCCATaGGGGCAGCGTTGGTCTCAGCACAGCTGTTGTAGG +
Preference number: 6 (lower is better)
Translates to: ACPAELSPSSEP*GQRWSQHSCCR
Trigger: CCTACAACAGCTGTGCTGAGACCAACGCTGCCCGCATGGCTCACTACTTGGAGAAAGCTCTGCTGGACATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS CCA 72 bp CTCAGGTGTGATGTTGAACCGCAGCTTCTTGGGCATTaGCAAGGGCACCATAGGAGACCGCACAAGCTCAGG +
Preference number: 6 (lower is better)
Translates to: LRCDVEPQLLGH*QGHHRRPHKLR
Trigger: CCTGAGCTTGTGCGGTCTCCTATGGTGCCCTTGCCAATGCCCAAGAAGCTGCGGTTCAACATCACACCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CCA 72 bp GAGCTTTCTCCAAGTAGTGAGCCATGCGGGCAGCGTTaGTCTCAGCACAGCTGTTGTAGGCTGACACGGAGA +
Preference number: 6 (lower is better)
Translates to: ELSPSSEPCGQR*SQHSCCRLTRR
Trigger: TCTCCGTGTCAGCCTACAACAGCTGTGCTGAGACCAACGCTGCCCGCATGGCTCACTACTTGGAGAAAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS TCA 72 bp TGCCATAACCATCTGGGACCACAGGTCCGAAGAACATaGCACAGTCTGTCTTGGCAGGGACCAGGTCCTCGA +
Preference number: 6 (lower is better)
Translates to: CHNHLGPQVRRT*HSLSWQGPGPR
Trigger: TCGAGGACCTGGTCCCTGCCAAGACAGACTGTGTCATGTTCTTCGGACCTGTGGTCCCAGATGGTTATGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000155790.8
CDS CAA 72 bp TTGAAGCGACCAGAAACCTTCATCAAGGAGGAGGGCTaGAGGAGGCCCAGGGGTTTTACCACGGTTCTGGCA +
Preference number: 6 (lower is better)
Translates to: LKRPETFIKEEG*RRPRGFTTVLA
Trigger: TGCCAGAACCGTGGTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000028207.13
ENSMUST00000102855.8
CDS CAA 90 bp GCCACGATGAACTGCAGTGTCTTGTCAAACCAGCGGTTGCCACTGTaGAACTTGCTACCACCACCATGTAGCATCTGGCCTGCTACGTGG +
Preference number: 6 (lower is better)
Translates to: ATMNCSVLSNQRLPL*NLLPPPCSIWPATW
Trigger: CCACGTAGCAGGCCAGATGCTACATGGTGGTGGTAGCAAGTTCAACAGTGGCAACCGCTGGTTTGACAAGACACTGCAGTTCATCGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS TCA 72 bp CATCTGGCCTGCTACGTGGTTTCGGTAGACATCATCTaGGACTCTAGGCACTTGCTTGTCCAGGCACACGGT +
Preference number: 6 (lower is better)
Translates to: HLACYVVSVDII*DSRHLLVQAHG
Trigger: ACCGTGTGCCTGGACAAGCAAGTGCCTAGAGTCTCAGATGATGTCTACCGAAACCACGTAGCAGGCCAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS GCA 72 bp GGTCTCTTTGACTTTAAGAAGTTCACCACTGAGTCCTaGTTGGGGCCGGGCACACGGCAAGAAGACAGGATC +
Preference number: 6 (lower is better)
Translates to: GLFDFKKFTTES*LGPGTRQEDRI
Trigger: GATCCTGTCTTCTTGCCGTGTGCCCGGCCCCAAGCAGGACTCAGTGGTGAACTTCTTAAAGTCAAAGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000132981.9
CDS GCA 72 bp TGCATGCTCATACACCATCCCACAGGAGCCGTCTTCTaGCACGATGAACTGCAGTGTCTTGTCAAACCAGCG +
Preference number: 6 (lower is better)
Translates to: CMLIHHPTGAVF*HDELQCLVKPA
Trigger: CGCTGGTTTGACAAGACACTGCAGTTCATCGTGGCAGAAGACGGCTCCTGTGGGATGGTGTATGAGCATGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CCA 72 bp CCAGGTGAAACATGCGCAGAGAGGCACTTTCATACGTaGCACACGCCTGCCCATAGATCCTGTAGTATGCCA +
Preference number: 6 (lower is better)
Translates to: PGETCAERHFHT*HTPAHRSCSMP
Trigger: TGGCATACTACAGGATCTATGGGCAGGCGTGTGCCACGTATGAAAGTGCCTCTCTGCGCATGTTTCACCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000155790.8
CDS CAA 72 bp TTGAAGCGACCAGAAACCTTCATCAAGGAGGAGGGCTaGAGGAGGCCCAGGGGTTTTACCTTCTCTCTCTGC +
Preference number: 6 (lower is better)
Translates to: LKRPETFIKEEG*RRPRGFTFSLC
Trigger: GCAGAGAGAGAAGGTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000132981.9
ENSMUST00000134120.2
CDS CAA 90 bp CCGTCTTCTGCCACGATGAACTGCAGTGTCTTGTCAAACCAGCGGTaGCCACTGTTGAACTTGCTACCACCACCATGTAGCATCTGGCCT +
Preference number: 6 (lower is better)
Translates to: PSSATMNCSVLSNQR*PLLNLLPPPCSIWP
Trigger: AGGCCAGATGCTACATGGTGGTGGTAGCAAGTTCAACAGTGGCAACCGCTGGTTTGACAAGACACTGCAGTTCATCGTGGCAGAAGACGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 90 bp TCTATGTCGTTCTTGATCTCAGGTGTGATGTTGAACCGCAGCTTCTaGGGCATTGGCAAGGGCACCATAGGAGACCGCACAAGCTCAGGC +
Preference number: 6 (lower is better)
Translates to: SMSFLISGVMLNRSF*GIGKGTIGDRTSSG
Trigger: GCCTGAGCTTGTGCGGTCTCCTATGGTGCCCTTGCCAATGCCCAAGAAGCTGCGGTTCAACATCACACCTGAGATCAAGAACGACATAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS TCA 72 bp ACTGCAGTGTCTTGTCAAACCAGCGGTTGCCACTGTTaGACTTGCTACCACCACCATGTAGCATCTGGCCTG +
Preference number: 6 (lower is better)
Translates to: TAVSCQTSGCHC*TCYHHHVASGL
Trigger: CAGGCCAGATGCTACATGGTGGTGGTAGCAAGTTCAACAGTGGCAACCGCTGGTTTGACAAGACACTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS TCA 72 bp TCTCAGCACAGCTGTTGTAGGCTGACACGGAGAAGTTaGTATGGGCCTCCATGGGGTTGTAGCAGATGCCAT +
Preference number: 6 (lower is better)
Translates to: SQHSCCRLTRRS*YGPPWGCSRCH
Trigger: ATGGCATCTGCTACAACCCCATGGAGGCCCATATCAACTTCTCCGTGTCAGCCTACAACAGCTGTGCTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000154595.2
ENSMUST00000155790.8
CDS GCA 72 bp CCTTGGCCCAGGTGTTTCGGTGGTTGGAGGTTAGGATaGCAACAGGCTCTTTGTTGGATTGCAGTGAGGAAT +
Preference number: 6 (lower is better)
Translates to: PWPRCFGGWRLG*QQALCWIAVRN
Trigger: ATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCGAAACACCTGGGCCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CCA 72 bp GGTTGTTGTAGGCCTTGGCCCAGGTGTTTCGGTGGTTaGAGGTTAGGATGCCAACAGGCTCTTTGTTGGATT +
Preference number: 6 (lower is better)
Translates to: GCCRPWPRCFGG*RLGCQQALCWI
Trigger: AATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCGAAACACCTGGGCCAAGGCCTACAACAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 72 bp AGTGTCTTGTCAAACCAGCGGTTGCCACTGTTGAACTaGCTACCACCACCATGTAGCATCTGGCCTGCTACG +
Preference number: 6 (lower is better)
Translates to: SVLSNQRLPLLN*LPPPCSIWPAT
Trigger: CGTAGCAGGCCAGATGCTACATGGTGGTGGTAGCAAGTTCAACAGTGGCAACCGCTGGTTTGACAAGACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 72 bp TTCTTGATCTCAGGTGTGATGTTGAACCGCAGCTTCTaGGGCATTGGCAAGGGCACCATAGGAGACCGCACA +
Preference number: 6 (lower is better)
Translates to: FLISGVMLNRSF*GIGKGTIGDRT
Trigger: TGTGCGGTCTCCTATGGTGCCCTTGCCAATGCCCAAGAAGCTGCGGTTCAACATCACACCTGAGATCAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 90 bp ATGAACTGCAGTGTCTTGTCAAACCAGCGGTTGCCACTGTTGAACTaGCTACCACCACCATGTAGCATCTGGCCTGCTACGTGGTTTCGG +
Preference number: 6 (lower is better)
Translates to: MNCSVLSNQRLPLLN*LPPPCSIWPATWFR
Trigger: CCGAAACCACGTAGCAGGCCAGATGCTACATGGTGGTGGTAGCAAGTTCAACAGTGGCAACCGCTGGTTTGACAAGACACTGCAGTTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 90 bp AGAACTGGTAGTTATGCACCACGGTTATATGCGTGGGTGGTCTCTTaGACTTTAAGAAGTTCACCACTGAGTCCTGCTTGGGGCCGGGCA +
Preference number: 6 (lower is better)
Translates to: RTGSYAPRLYAWVVS*TLRSSPLSPAWGRA
Trigger: TGCCCGGCCCCAAGCAGGACTCAGTGGTGAACTTCTTAAAGTCAAAGAGACCACCCACGCATATAACCGTGGTGCATAACTACCAGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CCA 72 bp TCTTTGACTTTAAGAAGTTCACCACTGAGTCCTGCTTaGGGCCGGGCACACGGCAAGAAGACAGGATCTGAT +
Preference number: 6 (lower is better)
Translates to: SLTLRSSPLSPA*GRAHGKKTGSD
Trigger: ATCAGATCCTGTCTTCTTGCCGTGTGCCCGGCCCCAAGCAGGACTCAGTGGTGAACTTCTTAAAGTCAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
ENSMUST00000132981.9
CDS CAA 72 bp AACTGCAGTGTCTTGTCAAACCAGCGGTTGCCACTGTaGAACTTGCTACCACCACCATGTAGCATCTGGCCT +
Preference number: 6 (lower is better)
Translates to: NCSVLSNQRLPL*NLLPPPCSIWP
Trigger: AGGCCAGATGCTACATGGTGGTGGTAGCAAGTTCAACAGTGGCAACCGCTGGTTTGACAAGACACTGCAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 72 bp GCTTTCTCTATGTCGTTCTTGATCTCAGGTGTGATGTaGAACCGCAGCTTCTTGGGCATTGGCAAGGGCACC +
Preference number: 6 (lower is better)
Translates to: AFSMSFLISGVM*NRSFLGIGKGT
Trigger: GGTGCCCTTGCCAATGCCCAAGAAGCTGCGGTTCAACATCACACCTGAGATCAAGAACGACATAGAGAAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 90 bp GCCCAGGTGTTTCGGTGGTTGGAGGTTAGGATGCCAACAGGCTCTTaGTTGGATTGCAGTGAGGAATTCCATATTTTCTCTAGCTGCACA +
Preference number: 6 (lower is better)
Translates to: AQVFRWLEVRMPTGS*LDCSEEFHIFSSCT
Trigger: TGTGCAGCTAGAGAAAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCGAAACACCTGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 90 bp TTCTGTTTGGCTTTCTCTATGTCGTTCTTGATCTCAGGTGTGATGTaGAACCGCAGCTTCTTGGGCATTGGCAAGGGCACCATAGGAGAC +
Preference number: 6 (lower is better)
Translates to: FCLAFSMSFLISGVM*NRSFLGIGKGTIGD
Trigger: GTCTCCTATGGTGCCCTTGCCAATGCCCAAGAAGCTGCGGTTCAACATCACACCTGAGATCAAGAACGACATAGAGAAAGCCAAACAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 90 bp TGGATCATGATGCTGAGGTTCTGTTTGGCTTTCTCTATGTCGTTCTaGATCTCAGGTGTGATGTTGAACCGCAGCTTCTTGGGCATTGGC +
Preference number: 6 (lower is better)
Translates to: WIMMLRFCLAFSMSF*ISGVMLNRSFLGIG
Trigger: GCCAATGCCCAAGAAGCTGCGGTTCAACATCACACCTGAGATCAAGAACGACATAGAGAAAGCCAAACAGAACCTCAGCATCATGATCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 90 bp CAGGTGTTTCGGTGGTTGGAGGTTAGGATGCCAACAGGCTCTTTGTaGGATTGCAGTGAGGAATTCCATATTTTCTCTAGCTGCACAAAG +
Preference number: 6 (lower is better)
Translates to: QVFRWLEVRMPTGSL*DCSEEFHIFSSCTK
Trigger: CTTTGTGCAGCTAGAGAAAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCGAAACACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS TCA 72 bp ATATTTTCTCTAGCTGCACAAAGATCTGATCTGAGGTaGGCGGTGTTCCGTCACTGTGGTACACATCCAGCT +
Preference number: 6 (lower is better)
Translates to: IFSLAAQRSDLR*AVFRHCGTHPA
Trigger: AGCTGGATGTGTACCACAGTGACGGAACACCGCTCACCTCAGATCAGATCTTTGTGCAGCTAGAGAAAATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS TCA 72 bp GAGGAATTCCATATTTTCTCTAGCTGCACAAAGATCTaGTCTGAGGTGAGCGGTGTTCCGTCACTGTGGTAC +
Preference number: 6 (lower is better)
Translates to: EEFHIFSSCTKI*SEVSGVPSLWY
Trigger: GTACCACAGTGACGGAACACCGCTCACCTCAGATCAGATCTTTGTGCAGCTAGAGAAAATATGGAATTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 72 bp AGTTATGCACCACGGTTATATGCGTGGGTGGTCTCTTaGACTTTAAGAAGTTCACCACTGAGTCCTGCTTGG +
Preference number: 6 (lower is better)
Translates to: SYAPRLYAWVVS*TLRSSPLSPAW
Trigger: CCAAGCAGGACTCAGTGGTGAACTTCTTAAAGTCAAAGAGACCACCCACGCATATAACCGTGGTGCATAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 72 bp CGGTGGTTGGAGGTTAGGATGCCAACAGGCTCTTTGTaGGATTGCAGTGAGGAATTCCATATTTTCTCTAGC +
Preference number: 6 (lower is better)
Translates to: RWLEVRMPTGSL*DCSEEFHIFSS
Trigger: GCTAGAGAAAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 72 bp ATGTCCAGGTCCTGGATCATGATGCTGAGGTTCTGTTaGGCTTTCTCTATGTCGTTCTTGATCTCAGGTGTG +
Preference number: 6 (lower is better)
Translates to: MSRSWIMMLRFC*AFSMSFLISGV
Trigger: CACACCTGAGATCAAGAACGACATAGAGAAAGCCAAACAGAACCTCAGCATCATGATCCAGGACCTGGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 90 bp AGCATCATGATGTCCAGGTCCTGGATCATGATGCTGAGGTTCTGTTaGGCTTTCTCTATGTCGTTCTTGATCTCAGGTGTGATGTTGAAC +
Preference number: 6 (lower is better)
Translates to: SIMMSRSWIMMLRFC*AFSMSFLISGVMLN
Trigger: GTTCAACATCACACCTGAGATCAAGAACGACATAGAGAAAGCCAAACAGAACCTCAGCATCATGATCCAGGACCTGGACATCATGATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CCA 72 bp CGAAGAACTGGTAGTTATGCACCACGGTTATATGCGTaGGTGGTCTCTTTGACTTTAAGAAGTTCACCACTG +
Preference number: 6 (lower is better)
Translates to: RRTGSYAPRLYA*VVSLTLRSSPL
Trigger: CAGTGGTGAACTTCTTAAAGTCAAAGAGACCACCCACGCATATAACCGTGGTGCATAACTACCAGTTCTTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CCA 72 bp GGTGGTTGGAGGTTAGGATGCCAACAGGCTCTTTGTTaGATTGCAGTGAGGAATTCCATATTTTCTCTAGCT +
Preference number: 6 (lower is better)
Translates to: GGWRLGCQQALC*IAVRNSIFSLA
Trigger: AGCTAGAGAAAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS GCA 72 bp TTGGAGGTTAGGATGCCAACAGGCTCTTTGTTGGATTaGAGTGAGGAATTCCATATTTTCTCTAGCTGCACA +
Preference number: 6 (lower is better)
Translates to: LEVRMPTGSLLD*SEEFHIFSSCT
Trigger: TGTGCAGCTAGAGAAAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS CAA 72 bp TTTCGGTGGTTGGAGGTTAGGATGCCAACAGGCTCTTaGTTGGATTGCAGTGAGGAATTCCATATTTTCTCT +
Preference number: 6 (lower is better)
Translates to: FRWLEVRMPTGS*LDCSEEFHIFS
Trigger: AGAGAAAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8
CDS TCA 72 bp GCACACGGTGAAGATGCTCTTCTGTATGGAGTTCACTaGCTCTCGGTTAACTTTGTCTTTAATGAGGTTGTT +
Preference number: 6 (lower is better)
Translates to: AHGEDALLYGVH*LSVNFVFNEVV
Trigger: AACAACCTCATTAAAGACAAAGTTAACCGAGAGTCAGTGAACTCCATACAGAAGAGCATCTTCACCGTGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000028207.13
ENSMUST00000102854.10
ENSMUST00000102855.8