Pregenerated sensors for CRABP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004885Ensembl transcript IDs: ENSMUST00000005019.6
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGACAGTCTCTTCCAGGAAGGACCCTGGTGTGGAGCTGGGACTGCTaGCCTGGGAGGGGCAAATGGCGGTGGGAGGGTTCTGAGCTTCTG | + |
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Preference number: 1 (lower is better) Translates to: RQSLPGRTLVWSWDC*PGRGKWRWEGSELL Trigger: CAGAAGCTCAGAACCCTCCCACCGCCATTTGCCCCTCCCAGGTCAGCAGTCCCAGCTCCACACCAGGGTCCTTCCTGGAAGAGACTGTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| 3UTR TCA 72 bp | CTGACCTGGGAGGGGCAAATGGCGGTGGGAGGGTTCTaGGCTTCTGCCCCTCTCTGGCTTAGAGAAGGCAAA | + |
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Preference number: 3 (lower is better) Translates to: LTWEGQMAVGGF*ASAPLWLREGK Trigger: TTTGCCTTCTCTAAGCCAGAGAGGGGCAGAAGCTCAGAACCCTCCCACCGCCATTTGCCCCTCCCAGGTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR GCA 90 bp | TGGTGTGGAGCTGGGACTGCTGACCTGGGAGGGGCAAATGGCGGTGGGAGGGTTTGCTGGCTTGGAGGCTaGAGCCACAGCGATCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: WCGAGTADLGGANGGGRVCWLGG*SHSDLP Trigger: AGGAAGATCGCTGTGGCTGCAGCCTCCAAGCCAGCA...AACCCTCCCACCGCCATTTGCCCCTCCCAGGTCAGCAGTCCCAGCTCCACACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR GCA 90 bp | TGGTGTGGAGCTGGGACTGCTGACCTGGGAGGGGCAAATGGCGGTGGGAGGGTTCTGTTTGATCTCGACTaGTGGCTTGGAGGCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: WCGAGTADLGGANGGGRVLFDLD*WLGGCS Trigger: GCTGCAGCCTCCAAGCCAGCAGTCGAGATCAAACAG...AACCCTCCCACCGCCATTTGCCCCTCCCAGGTCAGCAGTCCCAGCTCCACACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR CCA 90 bp | TGGTGTGGAGCTGGGACTGCTGACCTGGGAGGGGCAAATGGCGGTGGGAGGGTTCTCGGACGTAGACCCTaGTGCACACAACGTCATCTG | + |
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Preference number: 4 (lower is better) Translates to: WCGAGTADLGGANGGGRVLGRRP*CTQRHL Trigger: CAGATGACGTTGTGTGCACCAGGGTCTACGTCCGAG...AACCCTCCCACCGCCATTTGCCCCTCCCAGGTCAGCAGTCCCAGCTCCACACCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR TCA 90 bp | TGGTGTGGAGCTGGGACTGCTGACCTGGGAGGGGCAAATGGCGGTGGGAGGGTTCAGTGGTGGAGGTTTTaGTGTAGAAAGTGTCATTCT | + |
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Preference number: 4 (lower is better) Translates to: WCGAGTADLGGANGGGRVQWWRF*CRKCHS Trigger: AGAATGACACTTTCTACATCAAAACCTCCACCACTG...AACCCTCCCACCGCCATTTGCCCCTCCCAGGTCAGCAGTCCCAGCTCCACACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR GCA 90 bp | CAAAAGGCCTTGGAGGAAGCAGTAACCCTCAGGAGTAAGGGGAGAGCTAGTTTGCTCCCATCCACGGTCTaGTCCTCAAATTCCTCCCCG | + |
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Preference number: 4 (lower is better) Translates to: QKALEEAVTLRSKGRASLLPSTV*SSNSSP Trigger: CGGGGAGGAATTTGAGGAGCAGACCGTGGATGGGAG...CAAACTAGCTCTCCCCTTACTCCTGAGGGTTACTGCTTCCTCCAAGGCCTTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR GCA 90 bp | TCTGAGCTTCTGCCCCTCTCTGGCTTAGAGAAGGCAAAGAACAAAAGGCCTTGGGGACGTAGACCCTGGTaGACACAACGTCATCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: SELLPLSGLEKAKNKRPWGRRPW*TQRHLL Trigger: CAGCAGATGACGTTGTGTGCACCAGGGTCTACGTCC...CCAAGGCCTTTTGTTCTTTGCCTTCTCTAAGCCAGAGAGGGGCAGAAGCTCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR CCA 90 bp | CAAAAGGCCTTGGAGGAAGCAGTAACCCTCAGGAGTAAGGGGAGAGCTAGTTTGTTTGATCTCGACTGCTaGCTTGGAGGCTGCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: QKALEEAVTLRSKGRASLFDLDC*LGGCSH Trigger: GTGGCTGCAGCCTCCAAGCCAGCAGTCGAGATCAAA...CAAACTAGCTCTCCCCTTACTCCTGAGGGTTACTGCTTCCTCCAAGGCCTTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR TCA 90 bp | CAAAAGGCCTTGGAGGAAGCAGTAACCCTCAGGAGTAAGGGGAGAGCTAGTTTGTGTCATTCTCCTGTTTaGTCTCGACTGCTGGCTTGG | + |
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Preference number: 4 (lower is better) Translates to: QKALEEAVTLRSKGRASLCHSPV*SRLLAW Trigger: CCAAGCCAGCAGTCGAGATCAAACAGGAGAATGACA...CAAACTAGCTCTCCCCTTACTCCTGAGGGTTACTGCTTCCTCCAAGGCCTTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| 3UTR CAA 72 bp | CCTCTCTGGCTTAGAGAAGGCAAAGAACAAAAGGCCTaGGAGGAAGCAGTAACCCTCAGGAGTAAGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: PLWLREGKEQKA*EEAVTLRSKGR Trigger: TCTCCCCTTACTCCTGAGGGTTACTGCTTCCTCCAAGGCCTTTTGTTCTTTGCCTTCTCTAAGCCAGAGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR TCA 90 bp | TCTGAGCTTCTGCCCCTCTCTGGCTTAGAGAAGGCAAAGAACAAAAGGCCTTGGAGTTTTCCGATCGGATaGTCTTCCAGTTGCCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: SELLPLSGLEKAKNKRPWSFPIG*SSSCQK Trigger: TTTCTGGCAACTGGAAGATCATCCGATCGGAAAACT...CCAAGGCCTTTTGTTCTTTGCCTTCTCTAAGCCAGAGAGGGGCAGAAGCTCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR CAA 90 bp | TGGTGTGGAGCTGGGACTGCTGACCTGGGAGGGGCAAATGGCGGTGGGAGGGTTATCAGCTCTCCATCATaGGTCAGTTCTCGGCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: WCGAGTADLGGANGGGRVISSPS*VSSRLQ Trigger: CTGGAGCCGAGAACTGACCAATGATGGAGAGCTGAT...AACCCTCCCACCGCCATTTGCCCCTCCCAGGTCAGCAGTCCCAGCTCCACACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR CAA 90 bp | TGGTGTGGAGCTGGGACTGCTGACCTGGGAGGGGCAAATGGCGGTGGGAGGGTTGTGTCATTCTCCTGTTaGATCTCGACTGCTGGCTTG | + |
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Preference number: 5 (lower is better) Translates to: WCGAGTADLGGANGGGRVVSFSC*ISTAGL Trigger: CAAGCCAGCAGTCGAGATCAAACAGGAGAATGACAC...AACCCTCCCACCGCCATTTGCCCCTCCCAGGTCAGCAGTCCCAGCTCCACACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CCA 90 bp | GGATCAGCTCTCCATCATTGGTCAGTTCTCGGCTCCAGGAGGTCTTaGGGCCCTCCCCCTTCAGAAGCCTCTGCTCGCACACCATTTTGT | + |
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Preference number: 5 (lower is better) Translates to: GSALHHWSVLGSRRS*GPPPSEASARTPFC Trigger: ACAAAATGGTGTGCGAGCAGAGGCTTCTGAAGGGGGAGGGCCCCAAGACCTCCTGGAGCCGAGAACTGACCAATGATGGAGAGCTGATCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CCA 90 bp | ACACAACGTCATCTGCTGTCATTGTCAGGATCAGCTCTCCATCATTaGTCAGTTCTCGGCTCCAGGAGGTCTTGGGGCCCTCCCCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: TQRHLLSLSGSALHH*SVLGSRRSWGPPPS Trigger: TGAAGGGGGAGGGCCCCAAGACCTCCTGGAGCCGAGAACTGACCAATGATGGAGAGCTGATCCTGACAATGACAGCAGATGACGTTGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS GCA 90 bp | CTCTCCCATTTCACCAAACTCTTACAGGGTCTCCCATCCACGGTCTaGTCCTCAAATTCCTCCCCGATCTTGAAGTTAATCTCCGTGGTT | + |
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Preference number: 5 (lower is better) Translates to: LSHFTKLLQGLPSTV*SSNSSPILKLISVV Trigger: AACCACGGAGATTAACTTCAAGATCGGGGAGGAATTTGAGGAGCAGACCGTGGATGGGAGACCCTGTAAGAGTTTGGTGAAATGGGAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR CAA 90 bp | TCTGAGCTTCTGCCCCTCTCTGGCTTAGAGAAGGCAAAGAACAAAAGGCCTTGGTGCTCGCACACCATTTaGTTTCCACTCTCCCATTTC | + |
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Preference number: 5 (lower is better) Translates to: SELLPLSGLEKAKNKRPWCSHTI*FPLSHF Trigger: GAAATGGGAGAGTGGAAACAAAATGGTGTGCGAGCA...CCAAGGCCTTTTGTTCTTTGCCTTCTCTAAGCCAGAGAGGGGCAGAAGCTCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS-3UTR CAA 90 bp | TCTGAGCTTCTGCCCCTCTCTGGCTTAGAGAAGGCAAAGAACAAAAGGCCTTGGAATTCCTCCCCGATCTaGAAGTTAATCTCCGTGGTT | + |
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Preference number: 5 (lower is better) Translates to: SELLPLSGLEKAKNKRPWNSSPI*KLISVV Trigger: AACCACGGAGATTAACTTCAAGATCGGGGAGGAATT...CCAAGGCCTTTTGTTCTTTGCCTTCTCTAAGCCAGAGAGGGGCAGAAGCTCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CCA 90 bp | GGTTTTGATGTAGAAAGTGTCATTCTCCTGTTTGATCTCGACTGCTaGCTTGGAGGCTGCAGCCACAGCGATCTTCCTCATCATCATGTT | + |
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Preference number: 5 (lower is better) Translates to: GFDVESVILLFDLDC*LGGCSHSDLPHHHV Trigger: AACATGATGATGAGGAAGATCGCTGTGGCTGCAGCCTCCAAGCCAGCAGTCGAGATCAAACAGGAGAATGACACTTTCTACATCAAAACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CCA 72 bp | CTCCATCATTGGTCAGTTCTCGGCTCCAGGAGGTCTTaGGGCCCTCCCCCTTCAGAAGCCTCTGCTCGCACA | + |
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Preference number: 6 (lower is better) Translates to: LHHWSVLGSRRS*GPPPSEASART Trigger: TGTGCGAGCAGAGGCTTCTGAAGGGGGAGGGCCCCAAGACCTCCTGGAGCCGAGAACTGACCAATGATGGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CCA 72 bp | CATCTGCTGTCATTGTCAGGATCAGCTCTCCATCATTaGTCAGTTCTCGGCTCCAGGAGGTCTTGGGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: HLLSLSGSALHH*SVLGSRRSWGP Trigger: AGGGCCCCAAGACCTCCTGGAGCCGAGAACTGACCAATGATGGAGAGCTGATCCTGACAATGACAGCAGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CAA 72 bp | TCATCTGCTGTCATTGTCAGGATCAGCTCTCCATCATaGGTCAGTTCTCGGCTCCAGGAGGTCTTGGGGCCC | + |
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Preference number: 6 (lower is better) Translates to: SSAVIVRISSPS*VSSRLQEVLGP Trigger: GGGCCCCAAGACCTCCTGGAGCCGAGAACTGACCAATGATGGAGAGCTGATCCTGACAATGACAGCAGATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CAA 90 bp | GTCTTGGGGCCCTCCCCCTTCAGAAGCCTCTGCTCGCACACCATTTaGTTTCCACTCTCCCATTTCACCAAACTCTTACAGGGTCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: VLGPSPFRSLCSHTI*FPLSHFTKLLQGLP Trigger: TGGGAGACCCTGTAAGAGTTTGGTGAAATGGGAGAGTGGAAACAAAATGGTGTGCGAGCAGAGGCTTCTGAAGGGGGAGGGCCCCAAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CAA 72 bp | CCATCCACGGTCTGCTCCTCAAATTCCTCCCCGATCTaGAAGTTAATCTCCGTGGTTCGCACAGTGGTGGAG | + |
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Preference number: 6 (lower is better) Translates to: PSTVCSSNSSPI*KLISVVRTVVE Trigger: CTCCACCACTGTGCGAACCACGGAGATTAACTTCAAGATCGGGGAGGAATTTGAGGAGCAGACCGTGGATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS GCA 72 bp | GATGTAGAAAGTGTCATTCTCCTGTTTGATCTCGACTaGTGGCTTGGAGGCTGCAGCCACAGCGATCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: DVESVILLFDLD*WLGGCSHSDLP Trigger: AGGAAGATCGCTGTGGCTGCAGCCTCCAAGCCAGCAGTCGAGATCAAACAGGAGAATGACACTTTCTACATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CCA 72 bp | GTAGAAAGTGTCATTCTCCTGTTTGATCTCGACTGCTaGCTTGGAGGCTGCAGCCACAGCGATCTTCCTCAT | + |
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Preference number: 6 (lower is better) Translates to: VESVILLFDLDC*LGGCSHSDLPH Trigger: ATGAGGAAGATCGCTGTGGCTGCAGCCTCCAAGCCAGCAGTCGAGATCAAACAGGAGAATGACACTTTCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS CAA 72 bp | CCCTCCCCCTTCAGAAGCCTCTGCTCGCACACCATTTaGTTTCCACTCTCCCATTTCACCAAACTCTTACAG | + |
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Preference number: 6 (lower is better) Translates to: PSPFRSLCSHTI*FPLSHFTKLLQ Trigger: CTGTAAGAGTTTGGTGAAATGGGAGAGTGGAAACAAAATGGTGTGCGAGCAGAGGCTTCTGAAGGGGGAGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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| CDS GCA 72 bp | TTCACCAAACTCTTACAGGGTCTCCCATCCACGGTCTaGTCCTCAAATTCCTCCCCGATCTTGAAGTTAATC | + |
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Preference number: 6 (lower is better) Translates to: FTKLLQGLPSTV*SSNSSPILKLI Trigger: GATTAACTTCAAGATCGGGGAGGAATTTGAGGAGCAGACCGTGGATGGGAGACCCTGTAAGAGTTTGGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005019.6 |
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