Pregenerated sensors for CRABP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032291Ensembl transcript IDs: ENSMUST00000034830.9
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | GGGAGAGGTGTGTGGAGTAAAGACCCACTGGCAGTGTaGGGCCACGGCATACTCCTCAGGGGAACTCGCATC | + |
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Preference number: 3 (lower is better) Translates to: GRGVWSKDPLAV*GHGILLRGTRI Trigger: GATGCGAGTTCCCCTGAGGAGTATGCCGTGGCCCCACACTGCCAGTGGGTCTTTACTCCACACACCTCTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| 3UTR TCA 72 bp | AATGCCAAACCAAGGGTACACAAGGCAACAAGAGCCTaGGGGGAGGACACTACAACAATGTCATGGGGAAAA | + |
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Preference number: 3 (lower is better) Translates to: NAKPRVHKATRA*GEDTTTMSWGK Trigger: TTTTCCCCATGACATTGTTGTAGTGTCCTCCCCTCAGGCTCTTGTTGCCTTGTGTACCCTTGGTTTGGCATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR GCA 90 bp | ATTCATGGGGGAGAGGTGTGTGGAGTAAAGACCCACTGGCAGTGTGGGGCCACGTGGCGGATCTCCACGTaGGGCTTAGACGCAGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: IHGGEVCGVKTHWQCGATWRIST*GLDAAA Trigger: GGCGGCTGCGTCTAAGCCGCACGTGGAGATCCGCCA...CGTGGCCCCACACTGCCAGTGGGTCTTTACTCCACACACCTCTCCCCCATGAAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR GCA 90 bp | AGTGTGGGGCCACGGCATACTCCTCAGGGGAACTCGCATCCGGTCATGAAGCAGCGAAATTCTCGCTGCTaGGCATCTTCCAGGTACCGG | + |
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Preference number: 4 (lower is better) Translates to: SVGPRHTPQGNSHPVMKQRNSRC*ASSRYR Trigger: CCGGTACCTGGAAGATGCGCAGCAGCGAGAATTTCG...CTGCTTCATGACCGGATGCGAGTTCCCCTGAGGAGTATGCCGTGGCCCCACACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR GCA 90 bp | CATGGGGGAGAGGTGTGTGGAGTAAAGACCCACTGGCAGTGTGGGGCCACGGCACGTCGAAATTCTCGCTaGTGCGCATCTTCCAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: HGGEVCGVKTHWQCGATARRNSR*CASSRY Trigger: GTACCTGGAAGATGCGCAGCAGCGAGAATTTCGACG...TGCCGTGGCCCCACACTGCCAGTGGGTCTTTACTCCACACACCTCTCCCCCATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR GCA 90 bp | CATGGGGGAGAGGTGTGTGGAGTAAAGACCCACTGGCAGTGTGGGGCCACGGCAGTAAACTCCTGCATTTaGGTCCGTCCACTGTCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: HGGEVCGVKTHWQCGATAVNSCI*VRPLSP Trigger: AGGAGACAGTGGACGGACGCAAATGCAGGAGTTTAC...TGCCGTGGCCCCACACTGCCAGTGGGTCTTTACTCCACACACCTCTCCCCCATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR CCA 90 bp | TATTCATGGGGGAGAGGTGTGTGGAGTAAAGACCCACTGGCAGTGTGGGGCCACCCACCTTCCTCAGCATaGCGTTCACACCCAACGCCT | + |
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Preference number: 4 (lower is better) Translates to: YSWGRGVWSKDPLAVWGHPPSSA*RSHPTP Trigger: AGGCGTTGGGTGTGAACGCCATGCTGAGGAAGGTGG...GTGGCCCCACACTGCCAGTGGGTCTTTACTCCACACACCTCTCCCCCATGAATA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR GCA 90 bp | TGGCAGTGTGGGGCCACGGCATACTCCTCAGGGGAACTCGCATCCGGTCATGAAGGACATAAATTCTTGTaGACACCACATCATCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: WQCGATAYSSGELASGHEGHKFL*TPHHRR Trigger: GCGCCGATGATGTGGTGTGCACAAGAATTTATGTCC...TTCATGACCGGATGCGAGTTCCCCTGAGGAGTATGCCGTGGCCCCACACTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR TCA 90 bp | GGGTACACAAGGCAACAAGAGCCTGAGGGGAGGACACTACAACAATGTCATGGGTCACACCCAACGCCTTaGGGAGCTCGTCGAAATTCT | + |
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Preference number: 4 (lower is better) Translates to: GYTRQQEPEGRTLQQCHGSHPTP*GARRNS Trigger: AGAATTTCGACGAGCTCCTCAAGGCGTTGGGTGTGA...CCCATGACATTGTTGTAGTGTCCTCCCCTCAGGCTCTTGTTGCCTTGTGTACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR CCA 90 bp | TATTCATGGGGGAGAGGTGTGTGGAGTAAAGACCCACTGGCAGTGTGGGGCCACTCTCATTCTCCCACGTaGGTAAACTCCTGCATTTGC | + |
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Preference number: 4 (lower is better) Translates to: YSWGRGVWSKDPLAVWGHSHSPT*VNSCIC Trigger: GCAAATGCAGGAGTTTACCCACGTGGGAGAATGAGA...GTGGCCCCACACTGCCAGTGGGTCTTTACTCCACACACCTCTCCCCCATGAATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR TCA 90 bp | CCTAATATTCATGGGGGAGAGGTGTGTGGAGTAAAGACCCACTGGCAGTGTGGGAGTGTCTGTGTGCAGTaGATCTTGTTCTCATTCTCC | + |
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Preference number: 4 (lower is better) Translates to: PNIHGGEVCGVKTHWQCGSVCVQ*ILFSFS Trigger: GGAGAATGAGAACAAGATTCACTGCACACAGACACT...CCCACACTGCCAGTGGGTCTTTACTCCACACACCTCTCCCCCATGAATATTAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR GCA 90 bp | CCTAATATTCATGGGGGAGAGGTGTGTGGAGTAAAGACCCACTGGCAGTGTGGGCAAGAAGTGTCTGTGTaGAGTGAATCTTGTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: PNIHGGEVCGVKTHWQCGQEVSV*SESCSH Trigger: ATGAGAACAAGATTCACTGCACACAGACACTTCTTG...CCCACACTGCCAGTGGGTCTTTACTCCACACACCTCTCCCCCATGAATATTAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR CAA 90 bp | GGCAGTGTGGGGCCACGGCATACTCCTCAGGGGAACTCGCATCCGGTCATGAAGGAACTGATCCCCGTCTaGGCGGATCTCCACGTGCGG | + |
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Preference number: 5 (lower is better) Translates to: GSVGPRHTPQGNSHPVMKELIPV*ADLHVR Trigger: CCGCACGTGGAGATCCGCCAAGACGGGGATCAGTTC...CTTCATGACCGGATGCGAGTTCCCCTGAGGAGTATGCCGTGGCCCCACACTGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR CAA 90 bp | CATGGGGGAGAGGTGTGTGGAGTAAAGACCCACTGGCAGTGTGGGGCCACGGCAGGTAAACTCCTGCATTaGCGTCCGTCCACTGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: HGGEVCGVKTHWQCGATAGKLLH*RPSTVS Trigger: GGAGACAGTGGACGGACGCAAATGCAGGAGTTTACC...TGCCGTGGCCCCACACTGCCAGTGGGTCTTTACTCCACACACCTCTCCCCCATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR CAA 90 bp | AGTGTGGGGCCACGGCATACTCCTCAGGGGAACTCGCATCCGGTCATGAAGCAGAGGATTAGCTCATCGTaGGCCAGCTCTCGGGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: SVGPRHTPQGNSHPVMKQRISSS*ASSRVQ Trigger: CTGGACCCGAGAGCTGGCCAACGATGAGCTAATCCT...CTGCTTCATGACCGGATGCGAGTTCCCCTGAGGAGTATGCCGTGGCCCCACACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR CAA 90 bp | AGTGTGGGGCCACGGCATACTCCTCAGGGGAACTCGCATCCGGTCATGAAGCAGAAGCCCTCTCCGACCTaGAAGTTGATCTCCGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: SVGPRHTPQGNSHPVMKQKPSPT*KLISVV Trigger: CACCACGGAGATCAACTTCAAGGTCGGAGAGGGCTT...CTGCTTCATGACCGGATGCGAGTTCCCCTGAGGAGTATGCCGTGGCCCCACACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR CAA 90 bp | GGCAGTGTGGGGCCACGGCATACTCCTCAGGGGAACTCGCATCCGGTCATGAAGCCCGGACATAAATTCTaGTGCACACCACATCATCGG | + |
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Preference number: 5 (lower is better) Translates to: GSVGPRHTPQGNSHPVMKPGHKF*CTPHHR Trigger: CCGATGATGTGGTGTGCACAAGAATTTATGTCCGGG...CTTCATGACCGGATGCGAGTTCCCCTGAGGAGTATGCCGTGGCCCCACACTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS-3UTR CAA 90 bp | CCACGGCATACTCCTCAGGGGAACTCGCATCCGGTCATGAAGCAGGAACAAGCTTTCACACCCAACGCCTaGAGGAGCTCGTCGAAATTC | + |
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Preference number: 5 (lower is better) Translates to: PRHTPQGNSHPVMKQEQAFTPNA*RSSSKF Trigger: GAATTTCGACGAGCTCCTCAAGGCGTTGGGTGTGAA...AGCTTGTTCCTGCTTCATGACCGGATGCGAGTTCCCCTGAGGAGTATGCCGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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| CDS TCA 72 bp | TTAGGGCCATCCCCCTCAAGAAGTGTCTGTGTGCAGTaGATCTTGTTCTCATTCTCCCACGTGGGTAAACTC | + |
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Preference number: 6 (lower is better) Translates to: LGPSPSRSVCVQ*ILFSFSHVGKL Trigger: GAGTTTACCCACGTGGGAGAATGAGAACAAGATTCACTGCACACAGACACTTCTTGAGGGGGATGGCCCTAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034830.9 |
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