RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CR1L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000016481

Ensembl transcript IDs: ENSMUST00000075451.12, ENSMUST00000191775.2, ENSMUST00000193094.6, ENSMUST00000193829.2, ENSMUST00000194062.2, ENSMUST00000194111.6

Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTCCCTAGCCTCTCACAGTGCCAAGCCTCAGCTGCTGTCCATGACTaGTTCATACATTCAAAACCAGTACTACCTGGGTGGTTCTTACAC +
Preference number: 1 (lower is better)
Translates to: FPSLSQCQASAAVHD*FIHSKPVLPGWFLH
Trigger: GTGTAAGAACCACCCAGGTAGTACTGGTTTTGAATGTATGAAGCAGTCATGGACAGCAGCTGAGGCTTGGCACTGTGAGAGGCTAGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 90 bp GGTTCTTACACACTACAAGTTCAGCTGCAGCACCGGGTACAACTCTaGCTATCTCTGGAACACAGATTCTTTGTGCTCTCACAAAAGGCT +
Preference number: 1 (lower is better)
Translates to: GSYTLQVQLQHRVQL*LSLEHRFFVLSQKA
Trigger: AGCCTTTTGTGAGAGCACAAAGAATCTGTGTTCCAGAGATAGCCAGAGTTGTACCCGGTGCTGCAGCTGAACTTGTAGTGTGTAAGAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 90 bp GCTGTCCATGACTGCTTCATACATTCAAAACCAGTACTACCTGGGTaGTTCTTACACACTACAAGTTCAGCTGCAGCACCGGGTACAACT +
Preference number: 1 (lower is better)
Translates to: AVHDCFIHSKPVLPG*FLHTTSSAAAPGTT
Trigger: AGTTGTACCCGGTGCTGCAGCTGAACTTGTAGTGTGTAAGAACCACCCAGGTAGTACTGGTTTTGAATGTATGAAGCAGTCATGGACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 90 bp CTTTGTCTCCTGAATCCTAGGGTCAAAGGTGTGTACCACCATGCCTaGACTGAAGCTTTTCTCTACTTGAAACTTTCTCTATACCAGGCT +
Preference number: 1 (lower is better)
Translates to: LCLLNPRVKGVYHHA*TEAFLYLKLSLYQA
Trigger: AGCCTGGTATAGAGAAAGTTTCAAGTAGAGAAAAGCTTCAGTCCAGGCATGGTGGTACACACCTTTGACCCTAGGATTCAGGAGACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR TCA 90 bp TCAAAGGTGTGTACCACCATGCCTGGACTGAAGCTTTTCTCTACTTaGAACTTTCTCTATACCAGGCTAGCCTTGAACTCAAAGATCTGC +
Preference number: 1 (lower is better)
Translates to: SKVCTTMPGLKLFST*NFLYTRLALNSKIC
Trigger: GCAGATCTTTGAGTTCAAGGCTAGCCTGGTATAGAGAAAGTTTCAAGTAGAGAAAAGCTTCAGTCCAGGCATGGTGGTACACACCTTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR GCA 90 bp TCAGCACTCGTCCAGGTTGAGTCTTGTTTGCAGGTGATAGAGAACTaGCTCTTGATATATCCTGGGAGACATTCATACAACAAATATGTT +
Preference number: 1 (lower is better)
Translates to: SALVQVESCLQVIEN*LLIYPGRHSYNKYV
Trigger: AACATATTTGTTGTATGAATGTCTCCCAGGATATATCAAGAGGCAGTTCTCTATCACCTGCAAACAAGACTCAACCTGGACGAGTGCTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
3UTR GCA 90 bp CCACTCCTTCTTAAGCATAGCATTCAGCTCCATTTCACTTCCTGGTaGCCCTTTATTACTGTACACTTTGTACTTTTCCTTTTAGAGCTT +
Preference number: 1 (lower is better)
Translates to: PLLLKHSIQLHFTSW*PFITVHFVLFLLEL
Trigger: AAGCTCTAAAAGGAAAAGTACAAAGTGTACAGTAATAAAGGGGCACCAGGAAGTGAAATGGAGCTGAATGCTATGCTTAAGAAGGAGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 90 bp ACCATGACCAAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTaGCTTACAGGTTCAGAGGTTCAGTCCATTATGATCAAGGCAGAA +
Preference number: 1 (lower is better)
Translates to: TMTKTTLIREAFNWG*LTGSEVQSIMIKAE
Trigger: TTCTGCCTTGATCATAATGGACTGAACCTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
3UTR TCA 90 bp CCCAAATCTACATTCTTCCAAAGAAAAGGATGGTCAAGCCTATCATaGCAATACTCACTCCTGATACCAACTTCTGTCTTAGTTAGGGTT +
Preference number: 1 (lower is better)
Translates to: PKSTFFQRKGWSSLS*QYSLLIPTSVLVRV
Trigger: AACCCTAACTAAGACAGAAGTTGGTATCAGGAGTGAGTATTGTCATGATAGGCTTGACCATCCTTTTCTTTGGAAGAATGTAGATTTGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR TCA 90 bp TCACTCCTGATACCAACTTCTGTCTTAGTTAGGGTTTTATTGCTGTaGACAGACACCATGACCAAGACAACTCTTATAAGAGAAGCATTT +
Preference number: 1 (lower is better)
Translates to: SLLIPTSVLVRVLLL*TDTMTKTTLIREAF
Trigger: AAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGTGTCTGTTCACAGCAATAAAACCCTAACTAAGACAGAAGTTGGTATCAGGAGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR CCA 90 bp CAGTACCAGGCCTTCCCTAGCCTCTCACAGTGCCAAGCCTCAGCTGCTGTCCATTTTCACTTCAGTCACTaGTCTCTTCTTAATCACCAC +
Preference number: 2 (lower is better)
Translates to: QYQAFPSLSQCQASAAVHFHFSH*SLLNHH
Trigger: GTGGTGATTAAGAAGAGACCAGTGACTGAAGTGAAA...ATGGACAGCAGCTGAGGCTTGGCACTGTGAGAGGCTAGGGAAGGCCTGGTACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CAA 90 bp ATAACCTCTCATAGGCTCTCTTCATGGTGCCAAGCCTCAACTTCTTaGAATGACACCTTCAGTACCAGGCCTTCCCTAGCCTCTCACAGT +
Preference number: 2 (lower is better)
Translates to: ITSHRLSSWCQASTS*NDTFSTRPSLASHS
Trigger: ACTGTGAGAGGCTAGGGAAGGCCTGGTACTGAAGGTGTCATTCAAAGAAGTTGAGGCTTGGCACCATGAAGAGAGCCTATGAGAGGTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR CCA 90 bp GGTCATCCCATGGTACTGGCATCTCCAATATGCTGGGCTTTCCTGCTGCAAGTAAACTCTGGCTATCTCTaGAACACAGATTCTTTGTGC +
Preference number: 2 (lower is better)
Translates to: GHPMVLASPICWAFLLQVNSGYL*NTDSLC
Trigger: GCACAAAGAATCTGTGTTCCAGAGATAGCCAGAGTT...TACTTGCAGCAGGAAAGCCCAGCATATTGGAGATGCCAGTACCATGGGATGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR TCA 90 bp AGCTGCAGCACCGGGTACAACTCTGGCTATCTCTGGAACACAGATTCTTTGTGCAAGCTTTTCTCTACTTaGAACTTTCTCTATACCAGG +
Preference number: 2 (lower is better)
Translates to: SCSTGYNSGYLWNTDSLCKLFST*NFLYTR
Trigger: CCTGGTATAGAGAAAGTTTCAAGTAGAGAAAAGCTT...GCACAAAGAATCTGTGTTCCAGAGATAGCCAGAGTTGTACCCGGTGCTGCAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR TCA 90 bp TCTCCAATATGCTGGGCTTTCCTGCTGCAAGTAGGATTCATCAATAACCTCTCAGAAGCTGCCAAGTTCTaGTGCTTGCTTGAGCTTGAA +
Preference number: 2 (lower is better)
Translates to: SPICWAFLLQVGFINNLSEAAKF*CLLELE
Trigger: TTCAAGCTCAAGCAAGCATCAGAACTTGGCAGCTTC...TGAGAGGTTATTGATGAATCCTACTTGCAGCAGGAAAGCCCAGCATATTGGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CAA 90 bp GTCAAAGGTGTGTACCACCATGCCTGGACTGAAGCTTTTCTCTACTaGAAACTTTCTCTATACCAGGCTAGCCTTGAACTCAAAGATCTG +
Preference number: 2 (lower is better)
Translates to: VKGVYHHAWTEAFLY*KLSLYQASLELKDL
Trigger: CAGATCTTTGAGTTCAAGGCTAGCCTGGTATAGAGAAAGTTTCAAGTAGAGAAAAGCTTCAGTCCAGGCATGGTGGTACACACCTTTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR TCA 90 bp TCATCAATAACCTCTCATAGGCTCTCTTCATGGTGCCAAGCCTCAACTTCTTTGAGGGTTTTATTGCTGTaGACAGACACCATGACCAAG +
Preference number: 2 (lower is better)
Translates to: SSITSHRLSSWCQASTSLRVLLL*TDTMTK
Trigger: CTTGGTCATGGTGTCTGTTCACAGCAATAAAACCCT...CAAAGAAGTTGAGGCTTGGCACCATGAAGAGAGCCTATGAGAGGTTATTGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR CCA 90 bp AAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAGGTTCAGAGATCAAGGCAGAAGCATaGCAGTGTCCAGGCAGACAT +
Preference number: 2 (lower is better)
Translates to: KTTLIREAFNWGWLTGSEIKAEA*QCPGRH
Trigger: ATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGAT...CTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
3UTR-3UTR CCA 90 bp TCATCAATAACCTCTCATAGGCTCTCTTCATGGTGCCAAGCCTCAACTTCTTTGACAGTAGCAGTCTCTTaGCCACATACTGAAATTCTT +
Preference number: 2 (lower is better)
Translates to: SSITSHRLSSWCQASTSLTVAVS*PHTEIL
Trigger: AAGAATTTCAGTATGTGGCCAAGAGACTGCTACTGT...CAAAGAAGTTGAGGCTTGGCACCATGAAGAGAGCCTATGAGAGGTTATTGATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR TCA 90 bp ATTCAGCTCCATTTCACTTCCTGGTGCCCCTTTATTACTGTACACTTTGTACTTCTCTTGGCCACATACTaGAATTCTTCTCCTCTGAAA +
Preference number: 2 (lower is better)
Translates to: IQLHFTSWCPFITVHFVLLLATY*NSSPLK
Trigger: TTTCAGAGGAGAAGAATTTCAGTATGTGGCCAAGAG...AAGTACAAAGTGTACAGTAATAAAGGGGCACCAGGAAGTGAAATGGAGCTGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR CCA 90 bp TTCTGTCTCTTTGGATTAAGATGTATTACCATCATGTTTGGACCTACCTTCGCTCTCAGGCAGACTATTTaGACAATGGCAAAAAGCAGA +
Preference number: 2 (lower is better)
Translates to: FCLFGLRCITIMFGPTFALRQTI*TMAKSR
Trigger: TCTGCTTTTTGCCATTGTCCAAATAGTCTGCCTGAG...AGCGAAGGTAGGTCCAAACATGATGGTAATACATCTTAATCCAAAGAGACAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR CCA 90 bp TCCTTCTGTCTCTTTGGATTAAGATGTATTACCATCATGTTTGGACCTACCTTCCTCCATTTCACTTCCTaGTGCCCCTTTATTACTGTA +
Preference number: 2 (lower is better)
Translates to: SFCLFGLRCITIMFGPTFLHFTS*CPFITV
Trigger: TACAGTAATAAAGGGGCACCAGGAAGTGAAATGGAG...GAAGGTAGGTCCAAACATGATGGTAATACATCTTAATCCAAAGAGACAGAAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR-3UTR CCA 90 bp ATTGTTTTCGTATACACTTATCTTCAGCACTCGTCCAGGTTGAGTCTTGTTTGCCCTCTTGATATATCCTaGGAGACATTCATACAACAA +
Preference number: 2 (lower is better)
Translates to: IVFVYTYLQHSSRLSLVCPLDIS*ETFIQQ
Trigger: TTGTTGTATGAATGTCTCCCAGGATATATCAAGAGG...GCAAACAAGACTCAACCTGGACGAGTGCTGAAGATAAGTGTATACGAAAACAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
3UTR TCA 72 bp GGGGTTGGCTTACAGGTTCAGAGGTTCAGTCCATTATaGTCAAGGCAGAAGCATGGCAGTGTCCAGGCAGAC +
Preference number: 3 (lower is better)
Translates to: GVGLQVQRFSPL*SRQKHGSVQAD
Trigger: GTCTGCCTGGACACTGCCATGCTTCTGCCTTGATCATAATGGACTGAACCTCTGAACCTGTAAGCCAACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
3UTR CCA 72 bp TCAGAGGTTCAGTCCATTATGATCAAGGCAGAAGCATaGCAGTGTCCAGGCAGACATGGCGGAGGAGGAGAT +
Preference number: 3 (lower is better)
Translates to: SEVQSIMIKAEA*QCPGRHGGGGD
Trigger: ATCTCCTCCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGATCATAATGGACTGAACCTCTGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
3UTR GCA 72 bp CTCTCACAGTGCCAAGCCTCAGCTGCTGTCCATGACTaGTTCATACATTCAAAACCAGTACTACCTGGGTGG +
Preference number: 3 (lower is better)
Translates to: LSQCQASAAVHD*FIHSKPVLPGW
Trigger: CCACCCAGGTAGTACTGGTTTTGAATGTATGAAGCAGTCATGGACAGCAGCTGAGGCTTGGCACTGTGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 72 bp ACACTACAAGTTCAGCTGCAGCACCGGGTACAACTCTaGCTATCTCTGGAACACAGATTCTTTGTGCTCTCA +
Preference number: 3 (lower is better)
Translates to: TLQVQLQHRVQL*LSLEHRFFVLS
Trigger: TGAGAGCACAAAGAATCTGTGTTCCAGAGATAGCCAGAGTTGTACCCGGTGCTGCAGCTGAACTTGTAGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 72 bp GGTGGTCATCCCATGGTACTGGCATCTCCAATATGCTaGGCTTTCCTGCTGCAAGTAGGATTCATCAATAAC +
Preference number: 3 (lower is better)
Translates to: GGHPMVLASPIC*AFLLQVGFINN
Trigger: GTTATTGATGAATCCTACTTGCAGCAGGAAAGCCCAGCATATTGGAGATGCCAGTACCATGGGATGACCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 72 bp GACTGCTTCATACATTCAAAACCAGTACTACCTGGGTaGTTCTTACACACTACAAGTTCAGCTGCAGCACCG +
Preference number: 3 (lower is better)
Translates to: DCFIHSKPVLPG*FLHTTSSAAAP
Trigger: CGGTGCTGCAGCTGAACTTGTAGTGTGTAAGAACCACCCAGGTAGTACTGGTTTTGAATGTATGAAGCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 72 bp CTGTCTCTTTGGATTAAGATGTATTACCATCATGTTTaGACCTACCTTCGCTGGGTGGGATCTTGCCCCAAA +
Preference number: 3 (lower is better)
Translates to: LSLWIKMYYHHV*TYLRWVGSCPK
Trigger: TTTGGGGCAAGATCCCACCCAGCGAAGGTAGGTCCAAACATGATGGTAATACATCTTAATCCAAAGAGACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR TCA 72 bp TGTACCACCATGCCTGGACTGAAGCTTTTCTCTACTTaGAACTTTCTCTATACCAGGCTAGCCTTGAACTCA +
Preference number: 3 (lower is better)
Translates to: CTTMPGLKLFST*NFLYTRLALNS
Trigger: TGAGTTCAAGGCTAGCCTGGTATAGAGAAAGTTTCAAGTAGAGAAAAGCTTCAGTCCAGGCATGGTGGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 72 bp CTGAATCCTAGGGTCAAAGGTGTGTACCACCATGCCTaGACTGAAGCTTTTCTCTACTTGAAACTTTCTCTA +
Preference number: 3 (lower is better)
Translates to: LNPRVKGVYHHA*TEAFLYLKLSL
Trigger: TAGAGAAAGTTTCAAGTAGAGAAAAGCTTCAGTCCAGGCATGGTGGTACACACCTTTGACCCTAGGATTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR GCA 72 bp AATTCTTCTCCTCTGAAACCTCTAGAGTTTCAACAGTaGAAATCACCCTCAGCACCAAAGTCTTCCATATTT +
Preference number: 3 (lower is better)
Translates to: NSSPLKPLEFQQ*KSPSAPKSSIF
Trigger: AAATATGGAAGACTTTGGTGCTGAGGGTGATTTGCACTGTTGAAACTCTAGAGGTTTCAGAGGAGAAGAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 72 bp TTTGCAGGTGATAGAGAACTGCCTCTTGATATATCCTaGGAGACATTCATACAACAAATATGTTCCAATGGG +
Preference number: 3 (lower is better)
Translates to: FAGDRELPLDIS*ETFIQQICSNG
Trigger: CCCATTGGAACATATTTGTTGTATGAATGTCTCCCAGGATATATCAAGAGGCAGTTCTCTATCACCTGCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
3UTR-3UTR CAA 90 bp ATGACTGCTTCATACATTCAAAACCAGTACTACCTGGGTGGTTCTTACACACTAGAAGCTTTTCTCTACTaGAAACTTTCTCTATACCAG +
Preference number: 3 (lower is better)
Translates to: MTASYIQNQYYLGGSYTLEAFLY*KLSLYQ
Trigger: CTGGTATAGAGAAAGTTTCAAGTAGAGAAAAGCTTC...TAGTGTGTAAGAACCACCCAGGTAGTACTGGTTTTGAATGTATGAAGCAGTCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR GCA 72 bp TTTCTCTATACCAGGCTAGCCTTGAACTCAAAGATCTaGTTCCTTCTGTCTCTTTGGATTAAGATGTATTAC +
Preference number: 3 (lower is better)
Translates to: FLYTRLALNSKI*FLLSLWIKMYY
Trigger: GTAATACATCTTAATCCAAAGAGACAGAAGGAAGCAGATCTTTGAGTTCAAGGCTAGCCTGGTATAGAGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
3UTR CCA 72 bp AAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTaGCTTACAGGTTCAGAGGTTCAGTCCATTATGATC +
Preference number: 3 (lower is better)
Translates to: KTTLIREAFNWG*LTGSEVQSIMI
Trigger: GATCATAATGGACTGAACCTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
3UTR TCA 72 bp TCAAAATTTTACAGTAGCAGTCTCTTGGCCACATACTaGAATTCTTCTCCTCTGAAACCTCTAGAGTTTCAA +
Preference number: 3 (lower is better)
Translates to: SKFYSSSLLATY*NSSPLKPLEFQ
Trigger: TTGAAACTCTAGAGGTTTCAGAGGAGAAGAATTTCAGTATGTGGCCAAGAGACTGCTACTGTAAAATTTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp TATGATCAAGGCAGAAGCATGGCAGTGTCCAGGCAGACATGGCGGAGGAGGAGACTTGTGAGCAGAGACTaGAGGCGGACACAGCTGTCT +
Preference number: 4 (lower is better)
Translates to: YDQGRSMAVSRQTWRRRRLVSRD*RRTQLS
Trigger: AGACAGCTGTGTCCGCCTTCAGTCTCTGCTCACAAG...TCTCCTCCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGATCATA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp ATCAAGGCAGAAGCATGGCAGTGTCCAGGCAGACATGGCGGAGGAGGAGATGAGTGTTCTCCTGACTTGTaGGCAGAGACTGAAGGCGGA +
Preference number: 4 (lower is better)
Translates to: IKAEAWQCPGRHGGGGDECSPDL*AETEGG
Trigger: TCCGCCTTCAGTCTCTGCTCACAAGTCAGGAGAACA...CTCATCTCCTCCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGAT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR GCA 90 bp ATCAAGGCAGAAGCATGGCAGTGTCCAGGCAGACATGGCGGAGGAGGAGATGAGAATCTCCATTGGGAATaGCTGGGGGTATCTCACAAG +
Preference number: 4 (lower is better)
Translates to: IKAEAWQCPGRHGGGGDENLHWE*LGVSHK
Trigger: CTTGTGAGATACCCCCAGGCATTCCCAATGGAGATT...CTCATCTCCTCCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR TCA 90 bp TATGATCAAGGCAGAAGCATGGCAGTGTCCAGGCAGACATGGCGGAGGAGGAGACATTTGTTTAGGGACTaGCAATGCACACTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: YDQGRSMAVSRQTWRRRRHLFRD*QCTLLA
Trigger: AGCCAGCAGTGTGCATTGTCAGTCCCTAAACAAATG...TCTCCTCCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGATCATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR TCA 90 bp GTTTTACATTGTTTTCGTATACACTTATCTTCAGCACTCGTCCAGGTTGAGTCTGATGGGGCTGGGCAGTaGCAGGCAGCCCAGACCAGC +
Preference number: 4 (lower is better)
Translates to: VLHCFRIHLSSALVQVESDGAGQ*QAAQTS
Trigger: GCTGGTCTGGGCTGCCTGTCACTGCCCAGCCCCATC...AGACTCAACCTGGACGAGTGCTGAAGATAAGTGTATACGAAAACAATGTAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
CDS-3UTR GCA 90 bp TATGATCAAGGCAGAAGCATGGCAGTGTCCAGGCAGACATGGCGGAGGAGGAGAGGGATCCAAACTGAATaGCTGTGTGTACATGTACCA +
Preference number: 4 (lower is better)
Translates to: YDQGRSMAVSRQTWRRRRGIQTE*LCVHVP
Trigger: TGGTACATGTACACACAGGCATTCAGTTTGGATCCC...TCTCCTCCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGATCATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
3UTR CAA 72 bp CATAGGCTCTCTTCATGGTGCCAAGCCTCAACTTCTTaGAATGACACCTTCAGTACCAGGCCTTCCCTAGCC +
Preference number: 4 (lower is better)
Translates to: HRLSSWCQASTS*NDTFSTRPSLA
Trigger: GGCTAGGGAAGGCCTGGTACTGAAGGTGTCATTCAAAGAAGTTGAGGCTTGGCACCATGAAGAGAGCCTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp TCATCAATAACCTCTCATAGGCTCTCTTCATGGTGCCAAGCCTCAACTTCTTTGCGGATCCAGAGGCTCTaGACTCCGAGAAGAGACCTC +
Preference number: 4 (lower is better)
Translates to: SSITSHRLSSWCQASTSLRIQRL*TPRRDL
Trigger: GAGGTCTCTTCTCGGAGTTCAGAGCCTCTGGATCCG...CAAAGAAGTTGAGGCTTGGCACCATGAAGAGAGCCTATGAGAGGTTATTGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp ATTCAGCTCCATTTCACTTCCTGGTGCCCCTTTATTACTGTACACTTTGTACTTGGCAGAAGGAAGCTGTaGTGGGGCTGGGCAGTGACC +
Preference number: 4 (lower is better)
Translates to: IQLHFTSWCPFITVHFVLGRRKL*WGWAVT
Trigger: GGTCACTGCCCAGCCCCATCACAGCTTCCTTCTGCC...AAGTACAAAGTGTACAGTAATAAAGGGGCACCAGGAAGTGAAATGGAGCTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp AGCTGCAGCACCGGGTACAACTCTGGCTATCTCTGGAACACAGATTCTTTGTGCGACATATCACTCCCTTaGAGCAGCTTGGTAACTCTG +
Preference number: 4 (lower is better)
Translates to: SCSTGYNSGYLWNTDSLCDISLP*SSLVTL
Trigger: CAGAGTTACCAAGCTGCTTCAAGGGAGTGATATGTC...GCACAAAGAATCTGTGTTCCAGAGATAGCCAGAGTTGTACCCGGTGCTGCAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp CTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAGGTTCAGAGGTTCAGTCCGATGGGGCTGGGCAGTaGCCCAAAGTAAATGGCAGC +
Preference number: 4 (lower is better)
Translates to: LIREAFNWGWLTGSEVQSDGAGQ*PKVNGS
Trigger: GCTGCCATTTACTTTGGGTCACTGCCCAGCCCCATC...GGACTGAACCTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp ACCATGACCAAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAGGCAGAAGGAAGCTGTaGTGGGGCTGGGCAGTGACC +
Preference number: 4 (lower is better)
Translates to: TMTKTTLIREAFNWGWLTGRRKL*WGWAVT
Trigger: GGTCACTGCCCAGCCCCATCACAGCTTCCTTCTGCC...TGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR TCA 90 bp ATCAAGGCAGAAGCATGGCAGTGTCCAGGCAGACATGGCGGAGGAGGAGATGAGAAAGTCTTCTCTGGTTaGACTGAAGAAATCTCCATT +
Preference number: 4 (lower is better)
Translates to: IKAEAWQCPGRHGGGGDEKVFSG*TEEISI
Trigger: AATGGAGATTTCTTCAGTTCAACCAGAGAAGACTTT...CTCATCTCCTCCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR TCA 90 bp ATTGTTTTCGTATACACTTATCTTCAGCACTCGTCCAGGTTGAGTCTTGTTTGCCGGATCCAGAGGCTCTaGACTCCGAGAAGAGACCTC +
Preference number: 4 (lower is better)
Translates to: IVFVYTYLQHSSRLSLVCRIQRL*TPRRDL
Trigger: GAGGTCTCTTCTCGGAGTTCAGAGCCTCTGGATCCG...GCAAACAAGACTCAACCTGGACGAGTGCTGAAGATAAGTGTATACGAAAACAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
CDS-3UTR TCA 90 bp TACATTGTTTTCGTATACACTTATCTTCAGCACTCGTCCAGGTTGAGTCTTGTTGGCAGAAGGAAGCTGTaGTGGGGCTGGGCAGTGACA +
Preference number: 4 (lower is better)
Translates to: YIVFVYTYLQHSSRLSLVGRRKL*WGWAVT
Trigger: TGTCACTGCCCAGCCCCATCACAGCTTCCTTCTGCC...AACAAGACTCAACCTGGACGAGTGCTGAAGATAAGTGTATACGAAAACAATGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
CDS-3UTR CCA 90 bp ATCAAGGCAGAAGCATGGCAGTGTCCAGGCAGACATGGCGGAGGAGGAGATGAGACAAATATGTTCCAATaGGAAACATGGATTCATCAG +
Preference number: 4 (lower is better)
Translates to: IKAEAWQCPGRHGGGGDETNMFQ*ETWIHQ
Trigger: CTGATGAATCCATGTTTCCCATTGGAACATATTTGT...CTCATCTCCTCCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR TCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAGGCAGAAGGAAGCTGTaGTGGGGCTGGGCAGTGACC +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLGRRKL*WGWAVT
Trigger: GGTCACTGCCCAGCCCCATCACAGCTTCCTTCTGCC...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR TCA 90 bp CAGTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCCGGATCCAGAGGCTCTaGACTCCGAGAAGAGACCTC +
Preference number: 4 (lower is better)
Translates to: QFILKVIQTEHVLISRCCRIQRL*TPRRDL
Trigger: GAGGTCTCTTCTCGGAGTTCAGAGCCTCTGGATCCG...GCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR TCA 90 bp AGCTGCAGCACCGGGTACAACTCTGGCTATCTCTGGAACACAGATTCTTTGTGCAAAGTCTTCTCTGGTTaGACTGAAGAAATCTCCATT +
Preference number: 4 (lower is better)
Translates to: SCSTGYNSGYLWNTDSLCKVFSG*TEEISI
Trigger: AATGGAGATTTCTTCAGTTCAACCAGAGAAGACTTT...GCACAAAGAATCTGTGTTCCAGAGATAGCCAGAGTTGTACCCGGTGCTGCAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAGATGGGGCTGGGCAGTaGCCCAAAGTAAATGGCAGC +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLDGAGQ*PKVNGS
Trigger: GCTGCCATTTACTTTGGGTCACTGCCCAGCCCCATC...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR TCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTACTTGTGAGCAGAGACTaGAGGCGGACACAGCTGTCT +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLLVSRD*RRTQLS
Trigger: AGACAGCTGTGTCCGCCTTCAGTCTCTGCTCACAAG...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR TCA 90 bp TTTCAACAGTGCAAATCACCCTCAGCACCAAAGTCTTCCATATTTCTACTAGAACATTTGTTTAGGGACTaGCAATGCACACTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: FQQCKSPSAPKSSIFLLEHLFRD*QCTLLA
Trigger: AGCCAGCAGTGTGCATTGTCAGTCCCTAAACAAATG...TTCTAGTAGAAATATGGAAGACTTTGGTGCTGAGGGTGATTTGCACTGTTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp ACCATGACCAAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAGACATATCACTCCCTTaGAGCAGCTTGGTAACTCTG +
Preference number: 4 (lower is better)
Translates to: TMTKTTLIREAFNWGWLTDISLP*SSLVTL
Trigger: CAGAGTTACCAAGCTGCTTCAAGGGAGTGATATGTC...TGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR TCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTATGTTCTCCTGACTTGTaGGCAGAGACTGAAGGCGGA +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLCSPDL*AETEGG
Trigger: TCCGCCTTCAGTCTCTGCTCACAAGTCAGGAGAACA...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR TCA 90 bp CAGTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCGACTTCTTGAGTGAGTaGATTCCGTGCTGGGCTAGT +
Preference number: 4 (lower is better)
Translates to: QFILKVIQTEHVLISRCCDFLSE*IPCWAS
Trigger: ACTAGCCCAGCACGGAATTCACTCACTCAAGAAGTC...GCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS-3UTR TCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAAGGAGACTTCTTGAGTaGGTGAATTCCGTGCTGGGC +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLRRLLE*VNSVLG
Trigger: GCCCAGCACGGAATTCACTCACTCAAGAAGTCTCCT...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS-3UTR GCA 90 bp ACCATGACCAAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAAATCTCCATTGGGAATaGCTGGGGGTATCTCACAAG +
Preference number: 4 (lower is better)
Translates to: TMTKTTLIREAFNWGWLTNLHWE*LGVSHK
Trigger: CTTGTGAGATACCCCCAGGCATTCCCAATGGAGATT...TGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR GCA 90 bp CTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAGGTTCAGAGGTTCAGTCCACTGGCTTTGAGAACTaGCTTCTAGAGTATACCCAT +
Preference number: 4 (lower is better)
Translates to: LIREAFNWGWLTGSEVQSTGFEN*LLEYTH
Trigger: ATGGGTATACTCTAGAAGGCAGTTCTCAAAGCCAGT...GGACTGAACCTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR CCA 90 bp CATTGTTTTCGTATACACTTATCTTCAGCACTCGTCCAGGTTGAGTCTTGTTTGCTCACCCAAAGTAAATaGCAGCAAGAACAGCAGCAA +
Preference number: 4 (lower is better)
Translates to: HCFRIHLSSALVQVESCLLTQSK*QQEQQQ
Trigger: TTGCTGCTGTTCTTGCTGCCATTTACTTTGGGTGAG...CAAACAAGACTCAACCTGGACGAGTGCTGAAGATAAGTGTATACGAAAACAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
CDS-3UTR TCA 90 bp CAGTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCCATTTGTTTAGGGACTaGCAATGCACACTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: QFILKVIQTEHVLISRCCHLFRD*QCTLLA
Trigger: AGCCAGCAGTGTGCATTGTCAGTCCCTAAACAAATG...GCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS-3UTR TCA 90 bp CAGTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCGACATATCACTCCCTTaGAGCAGCTTGGTAACTCTG +
Preference number: 4 (lower is better)
Translates to: QFILKVIQTEHVLISRCCDISLP*SSLVTL
Trigger: CAGAGTTACCAAGCTGCTTCAAGGGAGTGATATGTC...GCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS-3UTR TCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAGACTTCTTGAGTGAGTaGATTCCGTGCTGGGCTAGT +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLDFLSE*IPCWAS
Trigger: ACTAGCCCAGCACGGAATTCACTCACTCAAGAAGTC...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS-3UTR GCA 90 bp AAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAGGTTCAGAGGGGATCCAAACTGAATaGCTGTGTGTACATGTACCA +
Preference number: 4 (lower is better)
Translates to: KTTLIREAFNWGWLTGSEGIQTE*LCVHVP
Trigger: TGGTACATGTACACACAGGCATTCAGTTTGGATCCC...CTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR GCA 90 bp CAGTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCAATCTCCATTGGGAATaGCTGGGGGTATCTCACAAG +
Preference number: 4 (lower is better)
Translates to: QFILKVIQTEHVLISRCCNLHWE*LGVSHK
Trigger: CTTGTGAGATACCCCCAGGCATTCCCAATGGAGATT...GCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR GCA 90 bp ACAGACACCATGACCAAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGACTGGCTTTGAGAACTaGCTTCTAGAGTATACCCAT +
Preference number: 4 (lower is better)
Translates to: TDTMTKTTLIREAFNWGWTGFEN*LLEYTH
Trigger: ATGGGTATACTCTAGAAGGCAGTTCTCAAAGCCAGT...CCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGTGTCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR CCA 90 bp TCCTTCTGTCTCTTTGGATTAAGATGTATTACCATCATGTTTGGACCTACCTTCGTGACCCAAAGTAAATaGCAGCAAGAACAGCAGCAA +
Preference number: 4 (lower is better)
Translates to: SFCLFGLRCITIMFGPTFVTQSK*QQEQQQ
Trigger: TTGCTGCTGTTCTTGCTGCCATTTACTTTGGGTCAC...GAAGGTAGGTCCAAACATGATGGTAATACATCTTAATCCAAAGAGACAGAAGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTACATTTGTTTAGGGACTaGCAATGCACACTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLHLFRD*QCTLLA
Trigger: AGCCAGCAGTGTGCATTGTCAGTCCCTAAACAAATG...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS-3UTR TCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAGACATATCACTCCCTTaGAGCAGCTTGGTAACTCTG +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLDISLP*SSLVTL
Trigger: CAGAGTTACCAAGCTGCTTCAAGGGAGTGATATGTC...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS-3UTR GCA 90 bp CAGTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCCCACTCACAAATAGGTaGCTCAGTATCCCAATCAAC +
Preference number: 4 (lower is better)
Translates to: QFILKVIQTEHVLISRCCPLTNR*LSIPIN
Trigger: GTTGATTGGGATACTGAGGCACCTATTTGTGAGTGG...GCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR GCA 90 bp CAAATCTACATTCTTCCAAAGAAAAGGATGGTCAAGCCTATCATGACAATACTCCCACTCACAAATAGGTaGCTCAGTATCCCAATCAAC +
Preference number: 4 (lower is better)
Translates to: QIYILPKKRMVKPIMTILPLTNR*LSIPIN
Trigger: GTTGATTGGGATACTGAGGCACCTATTTGTGAGTGG...GAGTATTGTCATGATAGGCTTGACCATCCTTTTCTTTGGAAGAATGTAGATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR CCA 90 bp CTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAGGTTCAGAGGTTCAGTCCCCTCTTGATATATCCTaGGAGACATTCATACAACAA +
Preference number: 4 (lower is better)
Translates to: LIREAFNWGWLTGSEVQSPLDIS*ETFIQQ
Trigger: TTGTTGTATGAATGTCTCCCAGGATATATCAAGAGG...GGACTGAACCTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR TCA 90 bp ACCATGACCAAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACATCCCAATCAACACTTTaGTCAGTGATGACACATACA +
Preference number: 4 (lower is better)
Translates to: TMTKTTLIREAFNWGWLTSQSTL*SVMTHT
Trigger: TGTATGTGTCATCACTGATCAAAGTGTTGATTGGGA...TGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR GCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAGGGATCCAAACTGAATaGCTGTGTGTACATGTACCA +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLGIQTE*LCVHVP
Trigger: TGGTACATGTACACACAGGCATTCAGTTTGGATCCC...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR GCA 90 bp CAGTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCACTGGCTTTGAGAACTaGCTTCTAGAGTATACCCAT +
Preference number: 4 (lower is better)
Translates to: QFILKVIQTEHVLISRCCTGFEN*LLEYTH
Trigger: ATGGGTATACTCTAGAAGGCAGTTCTCAAAGCCAGT...GCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS-3UTR CCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAGTGACCCAAAGTAAATaGCAGCAAGAACAGCAGCAA +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLVTQSK*QQEQQQ
Trigger: TTGCTGCTGTTCTTGCTGCCATTTACTTTGGGTCAC...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR CCA 90 bp CTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAGGTTCAGAGGTTCAGTCCACAAATATGTTCCAATaGGAAACATGGATTCATCAG +
Preference number: 4 (lower is better)
Translates to: LIREAFNWGWLTGSEVQSTNMFQ*ETWIHQ
Trigger: CTGATGAATCCATGTTTCCCATTGGAACATATTTGT...GGACTGAACCTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR CCA 90 bp ATTCAGCTCCATTTCACTTCCTGGTGCCCCTTTATTACTGTACACTTTGTACTTCCTCTTGATATATCCTaGGAGACATTCATACAACAA +
Preference number: 4 (lower is better)
Translates to: IQLHFTSWCPFITVHFVLPLDIS*ETFIQQ
Trigger: TTGTTGTATGAATGTCTCCCAGGATATATCAAGAGG...AAGTACAAAGTGTACAGTAATAAAGGGGCACCAGGAAGTGAAATGGAGCTGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR TCA 90 bp CAGTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTCCCAATCAACACTTTaGTCAGTGATGACACATACA +
Preference number: 4 (lower is better)
Translates to: QFILKVIQTEHVLISRCCSQSTL*SVMTHT
Trigger: TGTATGTGTCATCACTGATCAAAGTGTTGATTGGGA...GCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR TCA 90 bp CAAATCTACATTCTTCCAAAGAAAAGGATGGTCAAGCCTATCATGACAATACTCTCCCAATCAACACTTTaGTCAGTGATGACACATACA +
Preference number: 4 (lower is better)
Translates to: QIYILPKKRMVKPIMTILSQSTL*SVMTHT
Trigger: TGTATGTGTCATCACTGATCAAAGTGTTGATTGGGA...GAGTATTGTCATGATAGGCTTGACCATCCTTTTCTTTGGAAGAATGTAGATTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR GCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAACTGGCTTTGAGAACTaGCTTCTAGAGTATACCCAT +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLTGFEN*LLEYTH
Trigger: ATGGGTATACTCTAGAAGGCAGTTCTCAAAGCCAGT...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS-3UTR TCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAAAAGTCTTCTCTGGTTaGACTGAAGAAATCTCCATT +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLKVFSG*TEEISI
Trigger: AATGGAGATTTCTTCAGTTCAACCAGAGAAGACTTT...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR CCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTACCTCTTGATATATCCTaGGAGACATTCATACAACAA +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLPLDIS*ETFIQQ
Trigger: TTGTTGTATGAATGTCTCCCAGGATATATCAAGAGG...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR CCA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTAACAAATATGTTCCAATaGGAAACATGGATTCATCAG +
Preference number: 4 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLTNMFQ*ETWIHQ
Trigger: CTGATGAATCCATGTTTCCCATTGGAACATATTTGT...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR CAA 90 bp GTCCATTATGATCAAGGCAGAAGCATGGCAGTGTCCAGGCAGACATGGCGGAGGCGACATATCACTCCCTaGAAGCAGCTTGGTAACTCT +
Preference number: 5 (lower is better)
Translates to: VHYDQGRSMAVSRQTWRRRHITP*KQLGNS
Trigger: AGAGTTACCAAGCTGCTTCAAGGGAGTGATATGTCG...CCTCCGCCATGTCTGCCTGGACACTGCCATGCTTCTGCCTTGATCATAATGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS GCA 90 bp GGGAATGCCTGGGGGTATCTCACAAGGAATCCACTCACAAATAGGTaGCTCAGTATCCCAATCAACACTTTGATCAGTGATGACACATAC +
Preference number: 5 (lower is better)
Translates to: GNAWGYLTRNPLTNR*LSIPINTLISDDTY
Trigger: GTATGTGTCATCACTGATCAAAGTGTTGATTGGGATACTGAGGCACCTATTTGTGAGTGGATTCCTTGTGAGATACCCCCAGGCATTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075451.12
ENSMUST00000191775.2
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR CAA 90 bp ACAGACACCATGACCAAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGCTGAAGAAATCTCCATaGGGAATGCCTGGGGGTATC +
Preference number: 5 (lower is better)
Translates to: TDTMTKTTLIREAFNWGWLKKSP*GMPGGI
Trigger: GATACCCCCAGGCATTCCCAATGGAGATTTCTTCAG...CCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGTGTCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR CAA 90 bp ACAGACACCATGACCAAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGCAGGTTGAGTCTTGTTaGCAGGTGATAGAGAACTGC +
Preference number: 5 (lower is better)
Translates to: TDTMTKTTLIREAFNWGWQVESC*QVIENC
Trigger: GCAGTTCTCTATCACCTGCAAACAAGACTCAACCTG...CCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTTGGTCATGGTGTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR CAA 90 bp AAGACAACTCTTATAAGAGAAGCATTTAATTGGGGTTGGCTTACAGGTTCAGAGCAGGTTGAGTCTTGTTaGCAGGTGATAGAGAACTGC +
Preference number: 5 (lower is better)
Translates to: KTTLIREAFNWGWLTGSEQVESC*QVIENC
Trigger: GCAGTTCTCTATCACCTGCAAACAAGACTCAACCTG...CTCTGAACCTGTAAGCCAACCCCAATTAAATGCTTCTCTTATAAGAGTTGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS-3UTR CAA 90 bp TCCTTCTGTCTCTTTGGATTAAGATGTATTACCATCATGTTTGGACCTACCTTCCGACATATCACTCCCTaGAAGCAGCTTGGTAACTCT +
Preference number: 5 (lower is better)
Translates to: SFCLFGLRCITIMFGPTFRHITP*KQLGNS
Trigger: AGAGTTACCAAGCTGCTTCAAGGGAGTGATATGTCG...GAAGGTAGGTCCAAACATGATGGTAATACATCTTAATCCAAAGAGACAGAAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193094.6
CDS-3UTR CAA 90 bp CAGTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCCAGGTTGAGTCTTGTTaGCAGGTGATAGAGAACTGC +
Preference number: 5 (lower is better)
Translates to: QFILKVIQTEHVLISRCCQVESC*QVIENC
Trigger: GCAGTTCTCTATCACCTGCAAACAAGACTCAACCTG...GCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR CAA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTACTGAAGAAATCTCCATaGGGAATGCCTGGGGGTATC +
Preference number: 5 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLLKKSP*GMPGGI
Trigger: GATACCCCCAGGCATTCCCAATGGAGATTTCTTCAG...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000075451.12
CDS-3UTR CAA 90 bp GTTTATTTTAAAAGTGATACAGACAGAGCATGTTCTCATTTCACGTTGCTGCTACGACATATCACTCCCTaGAAGCAGCTTGGTAACTCT +
Preference number: 5 (lower is better)
Translates to: VYFKSDTDRACSHFTLLLRHITP*KQLGNS
Trigger: AGAGTTACCAAGCTGCTTCAAGGGAGTGATATGTCG...TAGCAGCAACGTGAAATGAGAACATGCTCTGTCTGTATCACTTTTAAAATAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000194062.2
CDS CCA 72 bp TGGGGCTGGGCAGTGACAGGCAGCCCAGACCAGCGTTaGAGTCTGCGCAGAGCCTATTTACCGCGGGTTCCC +
Preference number: 6 (lower is better)
Translates to: WGWAVTGSPDQR*SLRRAYLPRVP
Trigger: GGGAACCCGCGGTAAATAGGCTCTGCGCAGACTCCAACGCTGGTCTGGGCTGCCTGTCACTGCCCAGCCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
CDS CAA 72 bp ATGGGGCTGGGCAGTGACAGGCAGCCCAGACCAGCGTaGGAGTCTGCGCAGAGCCTATTTACCGCGGGTTCC +
Preference number: 6 (lower is better)
Translates to: MGLGSDRQPRPA*ESAQSLFTAGS
Trigger: GGAACCCGCGGTAAATAGGCTCTGCGCAGACTCCAACGCTGGTCTGGGCTGCCTGTCACTGCCCAGCCCCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
CDS CAA 90 bp TCACCCAAAGTAAATGGCAGCAAGAACAGCAGCAAAACTTCTAGCTaGACTCCTCCCCGGCCGAAGGCTACAAGGAGCCACACCGGATCC +
Preference number: 6 (lower is better)
Translates to: SPKVNGSKNSSKTSS*TPPRPKATRSHTGS
Trigger: GGATCCGGTGTGGCTCCTTGTAGCCTTCGGCCGGGGAGGAGTCAAGCTAGAAGTTTTGCTGCTGTTCTTGCTGCCATTTACTTTGGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193829.2
CDS TCA 72 bp GGTTTGGCAGAAGGAAGCTGTGATGGGGCTGGGCAGTaGCCCAAAGTAAATGGCAGCAAGAACAGCAGCAAA +
Preference number: 6 (lower is better)
Translates to: GLAEGSCDGAGQ*PKVNGSKNSSK
Trigger: TTTGCTGCTGTTCTTGCTGCCATTTACTTTGGGTCACTGCCCAGCCCCATCACAGCTTCCTTCTGCCAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000075451.12
ENSMUST00000193094.6
CDS TCA 72 bp TTCATTCCCAACCCCTTCTGGAATCCACTCATCTCCTaGGGGAGACGACATATCACTCCCTTGAAGCAGCTT +
Preference number: 6 (lower is better)
Translates to: FIPNPFWNPLIS*GRRHITPLKQL
Trigger: AAGCTGCTTCAAGGGAGTGATATGTCGTCTCCCTCAGGAGATGAGTGGATTCCAGAAGGGGTTGGGAATGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000075451.12
ENSMUST00000191775.2
ENSMUST00000193094.6
ENSMUST00000194062.2
ENSMUST00000194111.6
CDS CAA 72 bp CTCACAAATAGGTGCCTCAGTATCCCAATCAACACTTaGATCAGTGATGACACATACAGCAGAGGAGGAACC +
Preference number: 6 (lower is better)
Translates to: LTNRCLSIPINT*ISDDTYSRGGT
Trigger: GGTTCCTCCTCTGCTGTATGTGTCATCACTGATCAAAGTGTTGATTGGGATACTGAGGCACCTATTTGTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000075451.12
ENSMUST00000191775.2
ENSMUST00000193094.6
ENSMUST00000194111.6
CDS GCA 72 bp TGGGGGTATCTCACAAGGAATCCACTCACAAATAGGTaGCTCAGTATCCCAATCAACACTTTGATCAGTGAT +
Preference number: 6 (lower is better)
Translates to: WGYLTRNPLTNR*LSIPINTLISD
Trigger: ATCACTGATCAAAGTGTTGATTGGGATACTGAGGCACCTATTTGTGAGTGGATTCCTTGTGAGATACCCCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000075451.12
ENSMUST00000191775.2
ENSMUST00000193094.6
ENSMUST00000194111.6