RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPZ (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036596

Ensembl transcript IDs: ENSMUST00000038676.7, ENSMUST00000132959.2

Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 72 bp GGTGAACATACTTTAATAAGCTTCAGAGGCTGTGTATaGTGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCC +
Preference number: 3 (lower is better)
Translates to: GEHTLISFRGCV*CLWLPGSRQKP
Trigger: GGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATTAAAGTATGTTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp TCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCGTCCAGGCGAGCAGCTaGGGCTGGGGCGCGCGGCAA +
Preference number: 4 (lower is better)
Translates to: SEAVYDVCGCQAPGRSPGVQASS*GWGARQ
Trigger: TTGCCGCGCGCCCCAGCCCCAGCTGCTCGCCTGGAC...GCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR TCA 90 bp CAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTCCAGAGGATGGAGGATaGAGTCCACACGGCCGGCCT +
Preference number: 4 (lower is better)
Translates to: QRLCMMSVAARLQAEAQAPEDGG*SPHGRP
Trigger: AGGCCGGCCGTGTGGACTTCATCCTCCATCCTCTGG...AGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp GAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTGTGGCTCCATCAGTTCATaGTGGCCTGGGCGGCTCGAG +
Preference number: 4 (lower is better)
Translates to: EAVYDVCGCQAPGRSPGCGSISS*WPGRLE
Trigger: CTCGAGCCGCCCAGGCCAGCATGAACTGATGGAGCC...ACAGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp AGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTGTGGCTGGATGCGAGGGTTaGCCAGCAGGTACTCCGAGC +
Preference number: 4 (lower is better)
Translates to: RLCMMSVAARLQAEAQAVAGCEG*PAGTPS
Trigger: GCTCGGAGTACCTGCTGGGCAACCCTCGCATCCAGC...CACAGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp CAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTGCAGGTGGATGCGGGTaGTGTTCAGCAGGCGCTGGA +
Preference number: 4 (lower is better)
Translates to: QRLCMMSVAARLQAEAQAAGGCG*CSAGAG
Trigger: TCCAGCGCCTGCTGAACACCACCCGCATCCACCTGC...AGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp GAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTGTCGCCGCCATGCAGGCTaGCTGAGAGGACGAAGGGAA +
Preference number: 4 (lower is better)
Translates to: EAVYDVCGCQAPGRSPGCRRHAG*LRGRRE
Trigger: TTCCCTTCGTCCTCTCAGCCAGCCTGCATGGCGGCG...ACAGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp TCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCATGGCAGCAGGTGGATaGGGGTGGTGTTCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: SEAVYDVCGCQAPGRSPGMAAGG*GWCSAG
Trigger: GCCTGCTGAACACCACCCGCATCCACCTGCTGCCAT...GCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR TCA 90 bp CAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTCAGACATACCTCCAGTaGAGCTGTACCAGTCCGCCC +
Preference number: 4 (lower is better)
Translates to: QRLCMMSVAARLQAEAQAQTYLQ*SCTSPP
Trigger: GGGCGGACTGGTACAGCTTCACTGGAGGTATGTCTG...AGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp AAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCTCAGCAGGCGCTGGATaGGAGGGTTGCCCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: KLQRLCMMSVAARLQAEASAGAG*EGCPAG
Trigger: ACCTGCTGGGCAACCCTCGCATCCAGCGCCTGCTGA...GGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp AAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCGCGAATGAAGGTAGGTaGCAGGCCAGAGGGCAGGGC +
Preference number: 4 (lower is better)
Translates to: KLQRLCMMSVAARLQAEAANEGR*QARGQG
Trigger: GCCCTGCCCTCTGGCCTGCCACCTACCTTCATTCGC...GGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp TCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCCAATGCTGTAGGTCTTaGCCACCTGGGAACAGCGGG +
Preference number: 4 (lower is better)
Translates to: SEAVYDVCGCQAPGRSPGQCCRS*PPGNSG
Trigger: CCCGCTGTTCCCAGGTGGCCAAGACCTACAGCATTG...GCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp GAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTGTCAGTTCATGCTGGCCTaGGCGGCTCGAGAACTCGAT +
Preference number: 4 (lower is better)
Translates to: EAVYDVCGCQAPGRSPGCQFMLA*AARELD
Trigger: ATCGAGTTCTCGAGCCGCCCAGGCCAGCATGAACTG...ACAGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp TCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCGTAAGCCCACCACCATaGCTTGCTCCCACTAGCTGG +
Preference number: 4 (lower is better)
Translates to: SEAVYDVCGCQAPGRSPGVSPPP*LAPTSW
Trigger: CCAGCTAGTGGGAGCAAGCCATGGTGGTGGGCTTAC...GCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR TCA 90 bp GCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTCGAGAACTCGATaGCCACCAGGTCCTTGCCTT +
Preference number: 4 (lower is better)
Translates to: ASEAVYDVCGCQAPGRSPGSRTR*PPGPCL
Trigger: AAGGCAAGGACCTGGTGGTCATCGAGTTCTCGAGCC...TGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp CAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTGCAGGTCCACACAGGTaGCACTGTGTGTGTAGACCA +
Preference number: 4 (lower is better)
Translates to: QRLCMMSVAARLQAEAQAAGPHR*HCVCRP
Trigger: TGGTCTACACACACAGTGCCACCTGTGTGGACCTGC...AGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp GCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCATCCATCAGTTCATGCTaGCCTGGGCGGCTCGAGAAC +
Preference number: 4 (lower is better)
Translates to: ASEAVYDVCGCQAPGRSPSISSC*PGRLEN
Trigger: GTTCTCGAGCCGCCCAGGCCAGCATGAACTGATGGA...TGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR TCA 90 bp GCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCACAGCCGGTAGTACTCTaGCGTGAGGTCAGGGAAGTT +
Preference number: 4 (lower is better)
Translates to: ASEAVYDVCGCQAPGRSPQPVVL*REVREV
Trigger: AACTTCCCTGACCTCACGTCAGAGTACTACCGGCTG...TGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR TCA 90 bp TCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTCTGTATCCACTTCATaGTGGCTTTGGTCTCGGGGG +
Preference number: 4 (lower is better)
Translates to: SEAVYDVCGCQAPGRSPGSVSTS*WLWSRG
Trigger: CCCCCGAGACCAAAGCCATCATGAAGTGGATACAGA...GCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp AAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCAGCACCCTCTGCAGCTaGCACTTCGTAGCCATCAGG +
Preference number: 4 (lower is better)
Translates to: KLQRLCMMSVAARLQAEASTLCS*HFVAIR
Trigger: CCTGATGGCTACGAAGTGGCAGCTGCAGAGGGTGCT...GGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp AATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCAGGCCATGTCGATaGCGTCAAAGGCCGGCTGGC +
Preference number: 4 (lower is better)
Translates to: NKLQRLCMMSVAARLQAEARPCR*RQRPAG
Trigger: GCCAGCCGGCCTTTGACGCCATCGACATGGCCTGGC...TTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR TCA 90 bp TCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCCCACCAGTAGTACTGTaGGATGGGGATATGGTCTGT +
Preference number: 4 (lower is better)
Translates to: SEAVYDVCGCQAPGRSPGPPVVL*DGDMVC
Trigger: ACAGACCATATCCCCATCTCACAGTACTACTGGTGG...GCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp AAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAAAGCTGCGCCCAATaGTGTAGGTCTTGGCCACCT +
Preference number: 4 (lower is better)
Translates to: KLQRLCMMSVAARLQAEAQSCAQ*CRSWPP
Trigger: AGGTGGCCAAGACCTACAGCATTGGGCGCAGCTTTG...GGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp CAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTCAGATCCAGGTTCTGTaGATTCTGCCTTCCACTGGT +
Preference number: 4 (lower is better)
Translates to: QRLCMMSVAARLQAEAQAQIQVL*ILPSTG
Trigger: ACCAGTGGAAGGCAGAATGCACAGAACCTGGATCTG...AGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp TTTAATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAACCAGGTCGCCGCCATaGAGGCTGGCTGAGAGGACG +
Preference number: 4 (lower is better)
Translates to: FNKLQRLCMMSVAARLQATRSPP*RLAERT
Trigger: CGTCCTCTCAGCCAGCCTGCATGGCGGCGACCTGGT...TGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATTAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp GCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCACAGGAAGGAAGTTCTTaGGTCCTGTCGCCAGAGGAT +
Preference number: 4 (lower is better)
Translates to: ASEAVYDVCGCQAPGRSPQEGSS*VLSPED
Trigger: ATCCTCTGGCGACAGGACCCAAGAACTTCCTTCCTG...TGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR TCA 90 bp GAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTGTGCCACCTCATTGCCATaGATGTTTCCAATGAGCTTC +
Preference number: 4 (lower is better)
Translates to: EAVYDVCGCQAPGRSPGCATSLP*MFPMSF
Trigger: GAAGCTCATTGGAAACATTCATGGCAATGAGGTGGC...ACAGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp AAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCAGGTTCTGTGCATTCTaGCTTCCACTGGTCCAGCCA +
Preference number: 4 (lower is better)
Translates to: KLQRLCMMSVAARLQAEARFCAF*LPLVQP
Trigger: TGGCTGGACCAGTGGAAGGCAGAATGCACAGAACCT...GGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp AATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCACAGGTCCTGAGATaGAGGTCCACACAGGTGGCA +
Preference number: 4 (lower is better)
Translates to: NKLQRLCMMSVAARLQAEAQVLR*RSTQVA
Trigger: TGCCACCTGTGTGGACCTGCATCTCAGGACCTGTGC...TTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp TACTTTAATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGAGGGCTAGACTCCACTaGCTCCCACGACCGGTGCTC +
Preference number: 4 (lower is better)
Translates to: YFNKLQRLCMMSVAARLQRARLH*LPRPVL
Trigger: GAGCACCGGTCGTGGGAGGCAGTGGAGTCTAGCCCT...CTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATTAAAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp TTTAATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAATGGATGGCAGCAGGTaGATGCGGGTGGTGTTCAGC +
Preference number: 4 (lower is better)
Translates to: FNKLQRLCMMSVAARLQAMDGSR*MRVVFS
Trigger: GCTGAACACCACCCGCATCCACCTGCTGCCATCCAT...TGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp TTTAATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCACCTGTCGCCAGAGGATaGAGGATGAAGTCCACACGG +
Preference number: 4 (lower is better)
Translates to: FNKLQRLCMMSVAARLQAPVARG*RMKSTR
Trigger: CCGTGTGGACTTCATCCTCCATCCTCTGGCGACAGG...TGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp AATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAATCTCATGGGGGTTCTTaGAGAAGTCGAAGGGGTAGG +
Preference number: 4 (lower is better)
Translates to: NKLQRLCMMSVAARLQAESHGGS*RSRRGR
Trigger: CCTACCCCTTCGACTTCTCCAAGAACCCCCATGAGA...TTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR GCA 90 bp TTTAATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGCCTTCCTCCTCTGGTaGGAAGTATTGGGCACAATC +
Preference number: 4 (lower is better)
Translates to: FNKLQRLCMMSVAARLQAAFLLW*EVLGTI
Trigger: GATTGTGCCCAATACTTCGCACCAGAGGAGGAAGGC...TGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp AATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAACATTCTGCCTTCCACTaGTCCAGCCATTGTATCCAG +
Preference number: 4 (lower is better)
Translates to: NKLQRLCMMSVAARLQAEHSAFH*SSHCIQ
Trigger: CTGGATACAATGGCTGGACCAGTGGAAGGCAGAATG...TTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp AAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCAACATCTTTTTCTCATaGGGGTTCTTGGAGAAGTCG +
Preference number: 4 (lower is better)
Translates to: KLQRLCMMSVAARLQAEANIFFS*GFLEKS
Trigger: CGACTTCTCCAAGAACCCCCATGAGAAAAAGATGTT...GGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp AATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAACAAAATCCATCTGTGTaGGCTCTCTCTGAGGATCCT +
Preference number: 4 (lower is better)
Translates to: NKLQRLCMMSVAARLQAEQNPSV*ALSEDP
Trigger: AGGATCCTCAGAGAGAGCCCACACAGATGGATTTTG...TTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CCA 90 bp TTTAATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAAGTAGTACTGTGAGATaGGGATATGGTCTGTGCGCA +
Preference number: 4 (lower is better)
Translates to: FNKLQRLCMMSVAARLQASSTVR*GYGLCA
Trigger: TGCGCACAGACCATATCCCCATCTCACAGTACTACT...TGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 90 bp GCAGGTCCACACAGGTGGCGGAGGGGTCGGGTCCAGGCGAGCAGCTaGGGCTGGGGCGCGCGGCAAGGGCCAGCACGGCCAGCGCAGCCA +
Preference number: 5 (lower is better)
Translates to: AGPHRWRRGRVQASS*GWGARQGPARPAQP
Trigger: TGGCTGCGCTGGCCGTGCTGGCCCTTGCCGCGCGCCCCAGCCCCAGCTGCTCGCCTGGACCCGACCCCTCCGCCACCTGTGTGGACCTGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132959.2
CDS CCA 90 bp CCAGCCTCTGACATTTACCGGAGGGGTCGGGTCCAGGCGAGCAGCTaGGGCTGGGGCGCGCGGCAAGGGCCAGCACGGCCAGCGCAGCCA +
Preference number: 5 (lower is better)
Translates to: PASDIYRRGRVQASS*GWGARQGPARPAQP
Trigger: TGGCTGCGCTGGCCGTGCTGGCCCTTGCCGCGCGCCCCAGCCCCAGCTGCTCGCCTGGACCCGACCCCTCCGGTAAATGTCAGAGGCTGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 90 bp GTGTGGGGAACGATGTATGGTTATAGGCGGCATCCGCACAGGTCCTaGGATGCAGGTCCACACAGGTGGCGGAGGGGTCGGGTCCAGGCG +
Preference number: 5 (lower is better)
Translates to: VWGTMYGYRRHPHRS*DAGPHRWRRGRVQA
Trigger: CGCCTGGACCCGACCCCTCCGCCACCTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCCGCCTATAACCATACATCGTTCCCCACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132959.2
CDS-3UTR CAA 90 bp TCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCCGCTGGATGCGAGGGTaGCCCAGCAGGTACTCCGAG +
Preference number: 5 (lower is better)
Translates to: SEAVYDVCGCQAPGRSPGRWMRG*PSRYSE
Trigger: CTCGGAGTACCTGCTGGGCAACCCTCGCATCCAGCG...GCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 90 bp CCACCAGGTCCTTGCCTTCAAAGCTGCGCCCAATGCTGTAGGTCTTaGCCACCTGGGAACAGCGGGCCGCTGTCCTCTTCAGCACTCGGA +
Preference number: 5 (lower is better)
Translates to: PPGPCLQSCAQCCRS*PPGNSGPLSSSALG
Trigger: TCCGAGTGCTGAAGAGGACAGCGGCCCGCTGTTCCCAGGTGGCCAAGACCTACAGCATTGGGCGCAGCTTTGAAGGCAAGGACCTGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp CAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTCCCCGCTTCAGGAAGTaGCCCCCACACCTGTTCTCC +
Preference number: 5 (lower is better)
Translates to: QRLCMMSVAARLQAEAQAPRFRK*PPHLFS
Trigger: GGAGAACAGGTGTGGGGGCAACTTCCTGAAGCGGGG...AGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp CAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTTACCAGTCCGCCCCGTaGATGATGCTCCCCCGCTTC +
Preference number: 5 (lower is better)
Translates to: QRLCMMSVAARLQAEAQAYQSAP*MMLPRF
Trigger: GAAGCGGGGGAGCATCATCAACGGGGCGGACTGGTA...AGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 90 bp CGAAGTATTGGGCACAATCAAGGAAGTAGGGCCAGGCCATGTCGATaGCGTCAAAGGCCGGCTGGCAGGCCTCCCGAAGGCCCTCACAGA +
Preference number: 5 (lower is better)
Translates to: RSIGHNQGSRARPCR*RQRPAGRPPEGPHR
Trigger: TCTGTGAGGGCCTTCGGGAGGCCTGCCAGCCGGCCTTTGACGCCATCGACATGGCCTGGCCCTACTTCCTTGATTGTGCCCAATACTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 90 bp GACCATCTGAGCATAGGAGTGGTGGGCGAAGCGAATGAAGGTAGGTaGCAGGCCAGAGGGCAGGGCCTCCTCAACATCCAGCTCTCCACG +
Preference number: 5 (lower is better)
Translates to: DHLSIGVVGEANEGR*QARGQGLLNIQLST
Trigger: CGTGGAGAGCTGGATGTTGAGGAGGCCCTGCCCTCTGGCCTGCCACCTACCTTCATTCGCTTCGCCCACCACTCCTATGCTCAGATGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 90 bp CTTTGGTCTCGGGGGCCACCTTACCCCACCAGTAGTACTGTGAGATaGGGATATGGTCTGTGCGCACACCACGAGTCGAGGCCAGCCGGT +
Preference number: 5 (lower is better)
Translates to: LWSRGPPYPTSSTVR*GYGLCAHHESRPAG
Trigger: ACCGGCTGGCCTCGACTCGTGGTGTGCGCACAGACCATATCCCCATCTCACAGTACTACTGGTGGGGTAAGGTGGCCCCCGAGACCAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 90 bp CAGGCTCCATCAGTTCATGCTGGCCTGGGCGGCTCGAGAACTCGATaGCCACCAGGTCCTTGCCTTCAAAGCTGCGCCCAATGCTGTAGG +
Preference number: 5 (lower is better)
Translates to: QAPSVHAGLGGSRTR*PPGPCLQSCAQCCR
Trigger: CCTACAGCATTGGGCGCAGCTTTGAAGGCAAGGACCTGGTGGTCATCGAGTTCTCGAGCCGCCCAGGCCAGCATGAACTGATGGAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp TCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCATGACCACCAGGTCCTaGCCTTCAAAGCTGCGCCCA +
Preference number: 5 (lower is better)
Translates to: SEAVYDVCGCQAPGRSPGMTTRS*PSKLRP
Trigger: TGGGCGCAGCTTTGAAGGCAAGGACCTGGTGGTCAT...GCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp CAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTCCAGGAAGGAAGTTCTaGGGTCCTGTCGCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: QRLCMMSVAARLQAEAQAPGRKF*GPVARG
Trigger: TCCTCTGGCGACAGGACCCAAGAACTTCCTTCCTGG...AGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp GCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAAGCAGCCAGCGTGGCTaGTACGGGCTCAGTGATGTG +
Preference number: 5 (lower is better)
Translates to: ASEAVYDVCGCQAPGRSPSSQRG*YGLSDV
Trigger: CACATCACTGAGCCCGTACAAGCCACGCTGGCTGCT...TGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 90 bp CTCGAAGGTCCAGGAAGGAAGTTCTTGGGTCCTGTCGCCAGAGGATaGAGGATGAAGTCCACACGGCCGGCCTTCTTCATGCGCAAGGGA +
Preference number: 5 (lower is better)
Translates to: LEGPGRKFLGPVARG*RMKSTRPAFFMRKG
Trigger: TCCCTTGCGCATGAAGAAGGCCGGCCGTGTGGACTTCATCCTCCATCCTCTGGCGACAGGACCCAAGAACTTCCTTCCTGGACCTTCGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp AGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTGTGGTGAGGTCAGGGAAGTaGCGGTTCAGATCCAGGTTC +
Preference number: 5 (lower is better)
Translates to: RLCMMSVAARLQAEAQAVVRSGK*RFRSRF
Trigger: GAACCTGGATCTGAACCGCAACTTCCCTGACCTCAC...CACAGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp AGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTGTGTTGAGTAGGGGCTCCTaGTTCTGTTGCCACAGGCCA +
Preference number: 5 (lower is better)
Translates to: RLCMMSVAARLQAEAQAVLSRGS*FCCHRP
Trigger: TGGCCTGTGGCAACAGAACAAGGAGCCCCTACTCAA...CACAGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 90 bp GTGTGGGGAACGATGTATGGTTATAGGCGGCATCCGCACAGGTCCTaGGATGCAGGTCCACACAGGTGGCACTGTGTGTGTAGACCAGCC +
Preference number: 5 (lower is better)
Translates to: VWGTMYGYRRHPHRS*DAGPHRWHCVCRPA
Trigger: GGCTGGTCTACACACACAGTGCCACCTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCCGCCTATAACCATACATCGTTCCCCACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 90 bp GGGGCCAACACAGAGCACCCTAGCAGCCGCAGGTCAGGGTTGCACTaGCCCTCCAGGAGAAAGTGTATCACACCCAACAGCATGTACTCA +
Preference number: 5 (lower is better)
Translates to: GANTEHPSSRRSGLH*PSRRKCITPNSMYS
Trigger: TGAGTACATGCTGTTGGGTGTGATACACTTTCTCCTGGAGGGTCAGTGCAACCCTGACCTGCGGCTGCTAGGGTGCTCTGTGTTGGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038676.7
ENSMUST00000132959.2
CDS TCA 90 bp CTGTGCGCACACCACGAGTCGAGGCCAGCCGGTAGTACTCTGACGTaGGGTCAGGGAAGTTGCGGTTCAGATCCAGGTTCTGTGCATTCT +
Preference number: 5 (lower is better)
Translates to: LCAHHESRPAGSTLT*GQGSCGSDPGSVHS
Trigger: AGAATGCACAGAACCTGGATCTGAACCGCAACTTCCCTGACCTCACGTCAGAGTACTACCGGCTGGCCTCGACTCGTGGTGTGCGCACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 90 bp GCAGGCTGGCTGAGAGGACGAAGGGAATGGTCTGTATCCACTTCATaGTGGCTTTGGTCTCGGGGGCCACCTTACCCCACCAGTAGTACT +
Preference number: 5 (lower is better)
Translates to: AGWLRGRREWSVSTS*WLWSRGPPYPTSST
Trigger: AGTACTACTGGTGGGGTAAGGTGGCCCCCGAGACCAAAGCCATCATGAAGTGGATACAGACCATTCCCTTCGTCCTCTCAGCCAGCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS GCA 90 bp AAAGTGTATCACACCCAACAGCATGTACTCAGGGCTAGACTCCACTaGCTCCCACGACCGGTGCTCCAGCGGTGTGGGGAACGATGTATG +
Preference number: 5 (lower is better)
Translates to: KVYHTQQHVLRARLH*LPRPVLQRCGERCM
Trigger: CATACATCGTTCCCCACACCGCTGGAGCACCGGTCGTGGGAGGCAGTGGAGTCTAGCCCTGAGTACATGCTGTTGGGTGTGATACACTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038676.7
ENSMUST00000132959.2
CDS GCA 90 bp TCCACGGAGCTCTTCCAGAGGGTCATAGCAGCCTTCCTCCTCTGGTaGGAAGTATTGGGCACAATCAAGGAAGTAGGGCCAGGCCATGTC +
Preference number: 5 (lower is better)
Translates to: STELFQRVIAAFLLW*EVLGTIKEVGPGHV
Trigger: GACATGGCCTGGCCCTACTTCCTTGATTGTGCCCAATACTTCGCACCAGAGGAGGAAGGCTGCTATGACCCTCTGGAAGAGCTCCGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 90 bp CTCTCCACGGAGCTCTTCCAGAGGGTCATAGCAGCCTTCCTCCTCTaGTGCGAAGTATTGGGCACAATCAAGGAAGTAGGGCCAGGCCAT +
Preference number: 5 (lower is better)
Translates to: LSTELFQRVIAAFLL*CEVLGTIKEVGPGH
Trigger: ATGGCCTGGCCCTACTTCCTTGATTGTGCCCAATACTTCGCACCAGAGGAGGAAGGCTGCTATGACCCTCTGGAAGAGCTCCGTGGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 90 bp GGAAGTTGCGGTTCAGATCCAGGTTCTGTGCATTCTGCCTTCCACTaGTCCAGCCATTGTATCCAGCACCCTCTGCAGCTGCCACTTCGT +
Preference number: 5 (lower is better)
Translates to: GSCGSDPGSVHSAFH*SSHCIQHPLQLPLR
Trigger: ACGAAGTGGCAGCTGCAGAGGGTGCTGGATACAATGGCTGGACCAGTGGAAGGCAGAATGCACAGAACCTGGATCTGAACCGCAACTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp TTTAATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAATGCCGGCAGGGCCTTaGTGTGTGGCCTCCCTCACA +
Preference number: 5 (lower is better)
Translates to: FNKLQRLCMMSVAARLQAMPAGP*CVASLT
Trigger: TGTGAGGGAGGCCACACACAAAGGCCCTGCCGGCAT...TGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATTAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp CAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCCAGGCTCTCTGGTGCGAAGTATaGGGCACAATCAAGGAAGTA +
Preference number: 5 (lower is better)
Translates to: QRLCMMSVAARLQAEAQALWCEV*GTIKEV
Trigger: TACTTCCTTGATTGTGCCCAATACTTCGCACCAGAG...AGCCTGGGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp AAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCAGAAGCCACCATCTCCAGGAAGTaGAGTAGGGGCTCCTTGTTC +
Preference number: 5 (lower is better)
Translates to: KLQRLCMMSVAARLQAEATISRK*SRGSLF
Trigger: GAACAAGGAGCCCCTACTCAACTTCCTGGAGATGGT...GGCTTCTGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS-3UTR CAA 90 bp TTTAATAAGCTTCAGAGGCTGTGTATGATGTCTGTGGCTGCCAGGCTCCAGGCACACTTCATGATGGCTTaGGTCTCGGGGGCCACCTTA +
Preference number: 5 (lower is better)
Translates to: FNKLQRLCMMSVAARLQAHFMMA*VSGATL
Trigger: TAAGGTGGCCCCCGAGACCAAAGCCATCATGAAGTG...TGCCTGGAGCCTGGCAGCCACAGACATCATACACAGCCTCTGAAGCTTATTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 72 bp TACCGGAGGGGTCGGGTCCAGGCGAGCAGCTGGGGCTaGGGCGCGCGGCAAGGGCCAGCACGGCCAGCGCAG +
Preference number: 6 (lower is better)
Translates to: YRRGRVQASSWG*GARQGPARPAQ
Trigger: CTGCGCTGGCCGTGCTGGCCCTTGCCGCGCGCCCCAGCCCCAGCTGCTCGCCTGGACCCGACCCCTCCGGTA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 72 bp GACATTTACCGGAGGGGTCGGGTCCAGGCGAGCAGCTaGGGCTGGGGCGCGCGGCAAGGGCCAGCACGGCCA +
Preference number: 6 (lower is better)
Translates to: DIYRRGRVQASS*GWGARQGPARP
Trigger: TGGCCGTGCTGGCCCTTGCCGCGCGCCCCAGCCCCAGCTGCTCGCCTGGACCCGACCCCTCCGGTAAATGTC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 72 bp GGCAGCAGGTGGATGCGGGTGGTGTTCAGCAGGCGCTaGATGCGAGGGTTGCCCAGCAGGTACTCCGAGCAC +
Preference number: 6 (lower is better)
Translates to: GSRWMRVVFSRR*MRGLPSRYSEH
Trigger: GTGCTCGGAGTACCTGCTGGGCAACCCTCGCATCCAGCGCCTGCTGAACACCACCCGCATCCACCTGCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS GCA 72 bp TGCGGGTGGTGTTCAGCAGGCGCTGGATGCGAGGGTTaGCCAGCAGGTACTCCGAGCACAGGTACTGGGCCA +
Preference number: 6 (lower is better)
Translates to: CGWCSAGAGCEG*PAGTPSTGTGP
Trigger: TGGCCCAGTACCTGTGCTCGGAGTACCTGCTGGGCAACCCTCGCATCCAGCGCCTGCTGAACACCACCCGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS GCA 72 bp GCAGGTGGATGCGGGTGGTGTTCAGCAGGCGCTGGATaGGAGGGTTGCCCAGCAGGTACTCCGAGCACAGGT +
Preference number: 6 (lower is better)
Translates to: AGGCGWCSAGAG*EGCPAGTPSTG
Trigger: ACCTGTGCTCGGAGTACCTGCTGGGCAACCCTCGCATCCAGCGCCTGCTGAACACCACCCGCATCCACCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CAA 72 bp ATGCGGGTGGTGTTCAGCAGGCGCTGGATGCGAGGGTaGCCCAGCAGGTACTCCGAGCACAGGTACTGGGCC +
Preference number: 6 (lower is better)
Translates to: MRVVFSRRWMRG*PSRYSEHRYWA
Trigger: GGCCCAGTACCTGTGCTCGGAGTACCTGCTGGGCAACCCTCGCATCCAGCGCCTGCTGAACACCACCCGCAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS GCA 72 bp CACACCCAACAGCATGTACTCAGGGCTAGACTCCACTaGCTCCCACGACCGGTGCTCCAGCGGTGTGGGGAA +
Preference number: 6 (lower is better)
Translates to: HTQQHVLRARLH*LPRPVLQRCGE
Trigger: TTCCCCACACCGCTGGAGCACCGGTCGTGGGAGGCAGTGGAGTCTAGCCCTGAGTACATGCTGTTGGGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038676.7
ENSMUST00000132959.2
CDS CCA 72 bp ACTCCACTGCCTCCCACGACCGGTGCTCCAGCGGTGTaGGGAACGATGTATGGTTATAGGCGGCATCCGCAC +
Preference number: 6 (lower is better)
Translates to: TPLPPTTGAPAV*GTMYGYRRHPH
Trigger: GTGCGGATGCCGCCTATAACCATACATCGTTCCCCACACCGCTGGAGCACCGGTCGTGGGAGGCAGTGGAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038676.7
ENSMUST00000132959.2
CDS TCA 72 bp ACGATGTATGGTTATAGGCGGCATCCGCACAGGTCCTaGGATGCAGGTCCACACAGGTGGCGGAGGGGTCGG +
Preference number: 6 (lower is better)
Translates to: TMYGYRRHPHRS*DAGPHRWRRGR
Trigger: CCGACCCCTCCGCCACCTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCCGCCTATAACCATACATCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132959.2
CDS CCA 72 bp CCTTGCCTTCAAAGCTGCGCCCAATGCTGTAGGTCTTaGCCACCTGGGAACAGCGGGCCGCTGTCCTCTTCA +
Preference number: 6 (lower is better)
Translates to: PCLQSCAQCCRS*PPGNSGPLSSS
Trigger: TGAAGAGGACAGCGGCCCGCTGTTCCCAGGTGGCCAAGACCTACAGCATTGGGCGCAGCTTTGAAGGCAAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 72 bp CGGGGGCCACCTTACCCCACCAGTAGTACTGTGAGATaGGGATATGGTCTGTGCGCACACCACGAGTCGAGG +
Preference number: 6 (lower is better)
Translates to: RGPPYPTSSTVR*GYGLCAHHESR
Trigger: CCTCGACTCGTGGTGTGCGCACAGACCATATCCCCATCTCACAGTACTACTGGTGGGGTAAGGTGGCCCCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 72 bp TCAGTTCATGCTGGCCTGGGCGGCTCGAGAACTCGATaGCCACCAGGTCCTTGCCTTCAAAGCTGCGCCCAA +
Preference number: 6 (lower is better)
Translates to: SVHAGLGGSRTR*PPGPCLQSCAQ
Trigger: TTGGGCGCAGCTTTGAAGGCAAGGACCTGGTGGTCATCGAGTTCTCGAGCCGCCCAGGCCAGCATGAACTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 72 bp GGAAGTTCTTGGGTCCTGTCGCCAGAGGATGGAGGATaGAGTCCACACGGCCGGCCTTCTTCATGCGCAAGG +
Preference number: 6 (lower is better)
Translates to: GSSWVLSPEDGG*SPHGRPSSCAR
Trigger: CCTTGCGCATGAAGAAGGCCGGCCGTGTGGACTTCATCCTCCATCCTCTGGCGACAGGACCCAAGAACTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 72 bp GAGCTTCACCTCAGGCTCCATCAGTTCATGCTGGCCTaGGCGGCTCGAGAACTCGATGACCACCAGGTCCTT +
Preference number: 6 (lower is better)
Translates to: ELHLRLHQFMLA*AARELDDHQVL
Trigger: AAGGACCTGGTGGTCATCGAGTTCTCGAGCCGCCCAGGCCAGCATGAACTGATGGAGCCTGAGGTGAAGCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CAA 90 bp TCCTGGAACCGAGGTAAAGCTCTCGAAGGTCCAGGAAGGAAGTTCTaGGGTCCTGTCGCCAGAGGATGGAGGATGAAGTCCACACGGCCG +
Preference number: 6 (lower is better)
Translates to: SWNRGKALEGPGRKF*GPVARGWRMKSTRP
Trigger: CGGCCGTGTGGACTTCATCCTCCATCCTCTGGCGACAGGACCCAAGAACTTCCTTCCTGGACCTTCGAGAGCTTTACCTCGGTTCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 72 bp ACAGAGCACCCTAGCAGCCGCAGGTCAGGGTTGCACTaGCCCTCCAGGAGAAAGTGTATCACACCCAACAGC +
Preference number: 6 (lower is better)
Translates to: TEHPSSRRSGLH*PSRRKCITPNS
Trigger: GCTGTTGGGTGTGATACACTTTCTCCTGGAGGGTCAGTGCAACCCTGACCTGCGGCTGCTAGGGTGCTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038676.7
ENSMUST00000132959.2
CDS TCA 72 bp CACCACGAGTCGAGGCCAGCCGGTAGTACTCTGACGTaGGGTCAGGGAAGTTGCGGTTCAGATCCAGGTTCT +
Preference number: 6 (lower is better)
Translates to: HHESRPAGSTLT*GQGSCGSDPGS
Trigger: AGAACCTGGATCTGAACCGCAACTTCCCTGACCTCACGTCAGAGTACTACCGGCTGGCCTCGACTCGTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 72 bp GTACTTGAGCAGCCAGCGTGGCTTGTACGGGCTCAGTaGTGTGAAGTAAGCCCACCACCATGGCTTGCTCCC +
Preference number: 6 (lower is better)
Translates to: VLEQPAWLVRAQ*CEVSPPPWLAP
Trigger: GGGAGCAAGCCATGGTGGTGGGCTTACTTCACATCACTGAGCCCGTACAAGCCACGCTGGCTGCTCAAGTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS GCA 72 bp CCAACACAGAGCACCCTAGCAGCCGCAGGTCAGGGTTaGACTGACCCTCCAGGAGAAAGTGTATCACACCCA +
Preference number: 6 (lower is better)
Translates to: PTQSTLAAAGQG*TDPPGESVSHP
Trigger: TGGGTGTGATACACTTTCTCCTGGAGGGTCAGTGCAACCCTGACCTGCGGCTGCTAGGGTGCTCTGTGTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038676.7
ENSMUST00000132959.2
CDS GCA 72 bp CCCACCAGTAGTACTGTGAGATGGGGATATGGTCTGTaGGCACACCACGAGTCGAGGCCAGCCGGTAGTACT +
Preference number: 6 (lower is better)
Translates to: PTSSTVRWGYGL*AHHESRPAGST
Trigger: AGTACTACCGGCTGGCCTCGACTCGTGGTGTGCGCACAGACCATATCCCCATCTCACAGTACTACTGGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CCA 72 bp CCAGGAAGGAAGTTCTTGGGTCCTGTCGCCAGAGGATaGAGGATGAAGTCCACACGGCCGGCCTTCTTCATG +
Preference number: 6 (lower is better)
Translates to: PGRKFLGPVARG*RMKSTRPAFFM
Trigger: CATGAAGAAGGCCGGCCGTGTGGACTTCATCCTCCATCCTCTGGCGACAGGACCCAAGAACTTCCTTCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 72 bp CTGAGAGGACGAAGGGAATGGTCTGTATCCACTTCATaGTGGCTTTGGTCTCGGGGGCCACCTTACCCCACC +
Preference number: 6 (lower is better)
Translates to: LRGRREWSVSTS*WLWSRGPPYPT
Trigger: GGTGGGGTAAGGTGGCCCCCGAGACCAAAGCCATCATGAAGTGGATACAGACCATTCCCTTCGTCCTCTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CAA 90 bp TCTGTCACCATACCCTTGATGCCTCGGTGTACCATCTCCAGGAAGTaGAGTAGGGGCTCCTTGTTCTGTTGCCACAGGCCATACAGCGCC +
Preference number: 6 (lower is better)
Translates to: SVTIPLMPRCTISRK*SRGSLFCCHRPYSA
Trigger: GGCGCTGTATGGCCTGTGGCAACAGAACAAGGAGCCCCTACTCAACTTCCTGGAGATGGTACACCGAGGCATCAAGGGTATGGTGACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 72 bp ACGATGTATGGTTATAGGCGGCATCCGCACAGGTCCTaGGATGCAGGTCCACACAGGTGGCACTGTGTGTGT +
Preference number: 6 (lower is better)
Translates to: TMYGYRRHPHRS*DAGPHRWHCVC
Trigger: ACACACACAGTGCCACCTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCCGCCTATAACCATACATCGT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS TCA 72 bp CCCGTCCGGCCACCTCATTGCCATGAATGTTTCCAATaGGCTTCACCTCAGGCTCCATCAGTTCATGCTGGC +
Preference number: 6 (lower is better)
Translates to: PVRPPHCHECFQ*ASPQAPSVHAG
Trigger: GCCAGCATGAACTGATGGAGCCTGAGGTGAAGCTCATTGGAAACATTCATGGCAATGAGGTGGCCGGACGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS GCA 72 bp GGGAAGTTGCGGTTCAGATCCAGGTTCTGTGCATTCTaGCTTCCACTGGTCCAGCCATTGTATCCAGCACCC +
Preference number: 6 (lower is better)
Translates to: GKLRFRSRFCAF*LPLVQPLYPAP
Trigger: GGGTGCTGGATACAATGGCTGGACCAGTGGAAGGCAGAATGCACAGAACCTGGATCTGAACCGCAACTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CAA 72 bp CGAGGTAAAGCTCTCGAAGGTCCAGGAAGGAAGTTCTaGGGTCCTGTCGCCAGAGGATGGAGGATGAAGTCC +
Preference number: 6 (lower is better)
Translates to: RGKALEGPGRKF*GPVARGWRMKS
Trigger: GGACTTCATCCTCCATCCTCTGGCGACAGGACCCAAGAACTTCCTTCCTGGACCTTCGAGAGCTTTACCTCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS GCA 72 bp CTCTTCCAGAGGGTCATAGCAGCCTTCCTCCTCTGGTaGGAAGTATTGGGCACAATCAAGGAAGTAGGGCCA +
Preference number: 6 (lower is better)
Translates to: LFQRVIAAFLLW*EVLGTIKEVGP
Trigger: TGGCCCTACTTCCTTGATTGTGCCCAATACTTCGCACCAGAGGAGGAAGGCTGCTATGACCCTCTGGAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7
CDS CAA 72 bp ATACCCTTGATGCCTCGGTGTACCATCTCCAGGAAGTaGAGTAGGGGCTCCTTGTTCTGTTGCCACAGGCCA +
Preference number: 6 (lower is better)
Translates to: IPLMPRCTISRK*SRGSLFCCHRP
Trigger: TGGCCTGTGGCAACAGAACAAGGAGCCCCTACTCAACTTCCTGGAGATGGTACACCGAGGCATCAAGGGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038676.7