Pregenerated sensors for CPVL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052955Ensembl transcript IDs: ENSMUST00000166545.2, ENSMUST00000203101.3, ENSMUST00000204674.3
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TCCTCTCGCAGGTGCTTCTCAACCTCAGCACCGTCACTGAAGTTCTaGTTTCCCACGTGGATGGCTTGTCTCACTTGGGGGAGCGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: SSRRCFSTSAPSLKF*FPTWMACLTWGSVK Trigger: CTTGACGCTCCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAACTTCAGTGACGGTGCTGAGGTTGAGAAGCACCTGCGAGAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS TCA 90 bp | TCACTGTGTCCTCTCGCAGGTGCTTCTCAACCTCAGCACCGTCACTaGAGTTCTGGTTTCCCACGTGGATGGCTTGTCTCACTTGGGGGA | + |
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Preference number: 5 (lower is better) Translates to: SLCPLAGASQPQHRH*SSGFPRGWLVSLGG Trigger: TCCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAACTTCAGTGACGGTGCTGAGGTTGAGAAGCACCTGCGAGAGGACACAGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS GCA 90 bp | ATCCGATTTGAAGATCTTCCAGACCTTTCGACGTGCCCTTCTGTATaGTCGGGATCCCTTCCAGTCCATGGCCATCAAGGAGCGCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: IRFEDLPDLSTCPSV*SGSLPVHGHQGALC Trigger: ACAGAGCGCTCCTTGATGGCCATGGACTGGAAGGGATCCCGAGCATACAGAAGGGCACGTCGAAAGGTCTGGAAGATCTTCAAATCGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CCA 90 bp | TGCTTCTCAACCTCAGCACCGTCACTGAAGTTCTGGTTTCCCACGTaGATGGCTTGTCTCACTTGGGGGAGCGTCAAGAATTTTGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: CFSTSAPSLKFWFPT*MACLTWGSVKNFAK Trigger: CTTTGCAAAATTCTTGACGCTCCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAACTTCAGTGACGGTGCTGAGGTTGAGAAGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS TCA 90 bp | ATTTGCCCACACGCCTCACATAACCAGCCACTTCATTATCCGATTTaGAGATCTTCCAGACCTTTCGACGTGCCCTTCTGTATGCTCGGG | + |
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Preference number: 5 (lower is better) Translates to: ICPHASHNQPLHYPI*RSSRPFDVPFCMLG Trigger: CCCGAGCATACAGAAGGGCACGTCGAAAGGTCTGGAAGATCTTCAAATCGGATAATGAAGTGGCTGGTTATGTGAGGCGTGTGGGCAAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS GCA 90 bp | AGCCACTTCATTATCCGATTTGAAGATCTTCCAGACCTTTCGACGTaGCCTTCTGTATGCTCGGGATCCCTTCCAGTCCATGGCCATCAA | + |
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Preference number: 5 (lower is better) Translates to: SHFIIRFEDLPDLST*PSVCSGSLPVHGHQ Trigger: TTGATGGCCATGGACTGGAAGGGATCCCGAGCATACAGAAGGGCACGTCGAAAGGTCTGGAAGATCTTCAAATCGGATAATGAAGTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS TCA 90 bp | GAAAGAACCAGAAGAAGAGGTTGCTGTTGTAAGTCTGGTTCACCGTaGTGTAGCCGGCATAACTCTTGTCGTTCATTCCAGGGAACGGAC | + |
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Preference number: 5 (lower is better) Translates to: ERTRRRGCCCKSGSP*CSRHNSCRSFQGTD Trigger: GTCCGTTCCCTGGAATGAACGACAAGAGTTATGCCGGCTACATCACGGTGAACCAGACTTACAACAGCAACCTCTTCTTCTGGTTCTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS GCA 90 bp | TTCATCCACTCCTGCTCTTTGATGTATTTTACGCACTTGCTACACTaGTTCTGGAAGTACTTCTGCTGCTGTTCATCCAACAAGCCAATT | + |
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Preference number: 5 (lower is better) Translates to: FIHSCSLMYFTHLLH*FWKYFCCCSSNKPI Trigger: AATTGGCTTGTTGGATGAACAGCAGCAGAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAAATACATCAAAGAGCAGGAGTGGATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS GCA 90 bp | ATATTTCCCTGCATAAGACTCGCCAGTGACGTAAAAATCATTCTTTaGATACTCGGGAAACAACGTGAAGAACTGAATCAGGGCACTGTA | + |
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Preference number: 5 (lower is better) Translates to: IFPCIRLASDVKIIL*ILGKQREELNQGTV Trigger: TACAGTGCCCTGATTCAGTTCTTCACGTTGTTTCCCGAGTATGCAAAGAATGATTTTTACGTCACTGGCGAGTCTTATGCAGGGAAATAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS GCA 90 bp | TTGATGTATTTTACGCACTTGCTACACTGCTTCTGGAAGTACTTCTaGTGCTGTTCATCCAACAAGCCAATTTCATATAGGAATGCCGCA | + |
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Preference number: 5 (lower is better) Translates to: LMYFTHLLHCFWKYF*CCSSNKPISYRNAA Trigger: TGCGGCATTCCTATATGAAATTGGCTTGTTGGATGAACAGCAGCAGAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAAATACATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS CCA 90 bp | CACTCCTGCTCTTTGATGTATTTTACGCACTTGCTACACTGCTTCTaGAAGTACTTCTGCTGCTGTTCATCCAACAAGCCAATTTCATAT | + |
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Preference number: 5 (lower is better) Translates to: HSCSLMYFTHLLHCF*KYFCCCSSNKPISY Trigger: ATATGAAATTGGCTTGTTGGATGAACAGCAGCAGAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAAATACATCAAAGAGCAGGAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS CCA 72 bp | GTGCCCTTCTGTATGCTCGGGATCCCTTCCAGTCCATaGCCATCAAGGAGCGCTCTGTCAGGGCAGCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: VPFCMLGIPSSP*PSRSALSGQPP Trigger: TGGCGGCTGCCCTGACAGAGCGCTCCTTGATGGCCATGGACTGGAAGGGATCCCGAGCATACAGAAGGGCAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS GCA 72 bp | CAGGGCTTCACCGACTTCACTGTGTCCTCTCGCAGGTaGTTCTCAACCTCAGCACCGTCACTGAAGTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: QGFTDFTVSSRR*FSTSAPSLKFW Trigger: CCAGAACTTCAGTGACGGTGCTGAGGTTGAGAAGCACCTGCGAGAGGACACAGTGAAGTCGGTGAAGCCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CCA 72 bp | AGGTGCTTCTCAACCTCAGCACCGTCACTGAAGTTCTaGTTTCCCACGTGGATGGCTTGTCTCACTTGGGGG | + |
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Preference number: 6 (lower is better) Translates to: RCFSTSAPSLKF*FPTWMACLTWG Trigger: CCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAACTTCAGTGACGGTGCTGAGGTTGAGAAGCACCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS TCA 72 bp | GCTACATCATCCTCGCTGGTGGCGTATCCCTGGAAATaGTCGGTGAAGCTGAAGCCTGTACCCACCGGATTA | + |
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Preference number: 6 (lower is better) Translates to: ATSSSLVAYPWK*SVKLKPVPTGL Trigger: TAATCCGGTGGGTACAGGCTTCAGCTTCACCGATCATTTCCAGGGATACGCCACCAGCGAGGATGATGTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS GCA 72 bp | GAAGATCTTCCAGACCTTTCGACGTGCCCTTCTGTATaGTCGGGATCCCTTCCAGTCCATGGCCATCAAGGA | + |
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Preference number: 6 (lower is better) Translates to: EDLPDLSTCPSV*SGSLPVHGHQG Trigger: TCCTTGATGGCCATGGACTGGAAGGGATCCCGAGCATACAGAAGGGCACGTCGAAAGGTCTGGAAGATCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CCA 72 bp | ACCTCAGCACCGTCACTGAAGTTCTGGTTTCCCACGTaGATGGCTTGTCTCACTTGGGGGAGCGTCAAGAAT | + |
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Preference number: 6 (lower is better) Translates to: TSAPSLKFWFPT*MACLTWGSVKN Trigger: ATTCTTGACGCTCCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAACTTCAGTGACGGTGCTGAGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 72 bp | GCGCTCTGTCAGGGCAGCCGCCACGATGATGTCCAGTaGGCCATTGTAGATGAGAACCTTGTAGTAATTCAT | + |
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Preference number: 6 (lower is better) Translates to: ALCQGSRHDDVQ*AIVDENLVVIH Trigger: ATGAATTACTACAAGGTTCTCATCTACAATGGCCAACTGGACATCATCGTGGCGGCTGCCCTGACAGAGCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 90 bp | CATCAAGGAGCGCTCTGTCAGGGCAGCCGCCACGATGATGTCCAGTaGGCCATTGTAGATGAGAACCTTGTAGTAATTCATGATCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: HQGALCQGSRHDDVQ*AIVDENLVVIHDLR Trigger: TCTGAGATCATGAATTACTACAAGGTTCTCATCTACAATGGCCAACTGGACATCATCGTGGCGGCTGCCCTGACAGAGCGCTCCTTGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS GCA 72 bp | TGTGTCCTCCACCTCGGACGATTACCTGATGGAATTTaGCCACACGCCTCACATAACCAGCCACTTCATTAT | + |
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Preference number: 6 (lower is better) Translates to: CVLHLGRLPDGI*PHASHNQPLHY Trigger: ATAATGAAGTGGCTGGTTATGTGAGGCGTGTGGGCAAATTCCATCAGGTAATCGTCCGAGGTGGAGGACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 72 bp | GTTCATTCCAGGGAACGGACTGACCATGCTCTTCCTTaGCCCCTCCTTGATCTTCCCGTTTTTGATGTATGG | + |
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Preference number: 6 (lower is better) Translates to: VHSRERTDHALP*PLLDLPVFDVW Trigger: CCATACATCAAAAACGGGAAGATCAAGGAGGGGCAAAGGAAGAGCATGGTCAGTCCGTTCCCTGGAATGAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 72 bp | GGATGGCTTGTCTCACTTGGGGGAGCGTCAAGAATTTaGCAAAGTAACTTTGCTCCTTGGGTTCCGTGCACT | + |
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Preference number: 6 (lower is better) Translates to: GWLVSLGGASRI*QSNFAPWVPCT Trigger: AGTGCACGGAACCCAAGGAGCAAAGTTACTTTGCAAAATTCTTGACGCTCCCCCAAGTGAGACAAGCCATCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 90 bp | AACCTCAGCACCGTCACTGAAGTTCTGGTTTCCCACGTGGATGGCTaGTCTCACTTGGGGGAGCGTCAAGAATTTTGCAAAGTAACTTTG | + |
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Preference number: 6 (lower is better) Translates to: NLSTVTEVLVSHVDG*SHLGERQEFCKVTL Trigger: CAAAGTTACTTTGCAAAATTCTTGACGCTCCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAACTTCAGTGACGGTGCTGAGGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS TCA 72 bp | CACGCCTCACATAACCAGCCACTTCATTATCCGATTTaGAGATCTTCCAGACCTTTCGACGTGCCCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: HASHNQPLHYPI*RSSRPFDVPFC Trigger: ACAGAAGGGCACGTCGAAAGGTCTGGAAGATCTTCAAATCGGATAATGAAGTGGCTGGTTATGTGAGGCGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS GCA 72 bp | ATTATCCGATTTGAAGATCTTCCAGACCTTTCGACGTaGCCTTCTGTATGCTCGGGATCCCTTCCAGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: IIRFEDLPDLST*PSVCSGSLPVH Trigger: ATGGACTGGAAGGGATCCCGAGCATACAGAAGGGCACGTCGAAAGGTCTGGAAGATCTTCAAATCGGATAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 90 bp | TTCCCACGTGGATGGCTTGTCTCACTTGGGGGAGCGTCAAGAATTTaGCAAAGTAACTTTGCTCCTTGGGTTCCGTGCACTGTAAAATGT | + |
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Preference number: 6 (lower is better) Translates to: FPRGWLVSLGGASRI*QSNFAPWVPCTVKC Trigger: ACATTTTACAGTGCACGGAACCCAAGGAGCAAAGTTACTTTGCAAAATTCTTGACGCTCCCCCAAGTGAGACAAGCCATCCACGTGGGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 72 bp | TATGGGCTAAGAAAAAGAGGCTGTCCTGCATCCCCCTaGAAGGACTGGGAAACAAGGATACTTCGGTATACT | + |
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Preference number: 6 (lower is better) Translates to: YGLRKRGCPASP*KDWETRILRYT Trigger: AGTATACCGAAGTATCCTTGTTTCCCAGTCCTTCAAGGGGGATGCAGGACAGCCTCTTTTTCTTAGCCCATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 72 bp | GAAGTTCTGGTTTCCCACGTGGATGGCTTGTCTCACTaGGGGGAGCGTCAAGAATTTTGCAAAGTAACTTTG | + |
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Preference number: 6 (lower is better) Translates to: EVLVSHVDGLSH*GERQEFCKVTL Trigger: CAAAGTTACTTTGCAAAATTCTTGACGCTCCCCCAAGTGAGACAAGCCATCCACGTGGGAAACCAGAACTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS TCA 72 bp | GGGCCGGAACATATTTCCCTGCATAAGACTCGCCAGTaGCGTAAAAATCATTCTTTGCATACTCGGGAAACA | + |
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Preference number: 6 (lower is better) Translates to: GPEHISLHKTRQ*RKNHSLHTRET Trigger: TGTTTCCCGAGTATGCAAAGAATGATTTTTACGTCACTGGCGAGTCTTATGCAGGGAAATATGTTCCGGCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 72 bp | TCCAGGATTTCAAAGGCCTTCATCCACTCCTGCTCTTaGATGTATTTTACGCACTTGCTACACTGCTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SRISKAFIHSCS*MYFTHLLHCFW Trigger: CCAGAAGCAGTGTAGCAAGTGCGTAAAATACATCAAAGAGCAGGAGTGGATGAAGGCCTTTGAAATCCTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS CAA 90 bp | AGCAGCTTATCCAGGATTTCAAAGGCCTTCATCCACTCCTGCTCTTaGATGTATTTTACGCACTTGCTACACTGCTTCTGGAAGTACTTC | + |
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Preference number: 6 (lower is better) Translates to: SSLSRISKAFIHSCS*MYFTHLLHCFWKYF Trigger: GAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAAATACATCAAAGAGCAGGAGTGGATGAAGGCCTTTGAAATCCTGGATAAGCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS GCA 72 bp | TCCTGCTCTTTGATGTATTTTACGCACTTGCTACACTaGTTCTGGAAGTACTTCTGCTGCTGTTCATCCAAC | + |
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Preference number: 6 (lower is better) Translates to: SCSLMYFTHLLH*FWKYFCCCSSN Trigger: GTTGGATGAACAGCAGCAGAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAAATACATCAAAGAGCAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS GCA 72 bp | AGCTTATCCAGGATTTCAAAGGCCTTCATCCACTCCTaGTCTTTGATGTATTTTACGCACTTGCTACACTGC | + |
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Preference number: 6 (lower is better) Translates to: SLSRISKAFIHS*SLMYFTHLLHC Trigger: GCAGTGTAGCAAGTGCGTAAAATACATCAAAGAGCAGGAGTGGATGAAGGCCTTTGAAATCCTGGATAAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS GCA 72 bp | TTTACGCACTTGCTACACTGCTTCTGGAAGTACTTCTaGTGCTGTTCATCCAACAAGCCAATTTCATATAGG | + |
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Preference number: 6 (lower is better) Translates to: FTHLLHCFWKYF*CCSSNKPISYR Trigger: CCTATATGAAATTGGCTTGTTGGATGAACAGCAGCAGAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS CCA 72 bp | TCTTTGATGTATTTTACGCACTTGCTACACTGCTTCTaGAAGTACTTCTGCTGCTGTTCATCCAACAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: SLMYFTHLLHCF*KYFCCCSSNKP Trigger: TGGCTTGTTGGATGAACAGCAGCAGAAGTACTTCCAGAAGCAGTGTAGCAAGTGCGTAAAATACATCAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS GCA 72 bp | TGCATAAGACTCGCCAGTGACGTAAAAATCATTCTTTaGATACTCGGGAAACAACGTGAAGAACTGAATCAG | + |
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Preference number: 6 (lower is better) Translates to: CIRLASDVKIIL*ILGKQREELNQ Trigger: CTGATTCAGTTCTTCACGTTGTTTCCCGAGTATGCAAAGAATGATTTTTACGTCACTGGCGAGTCTTATGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CCA 72 bp | GGAGCGTCAAGAATTTTGCAAAGTAACTTTGCTCCTTaGGTTCCGTGCACTGTAAAATGTTGTAGTAATTGG | + |
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Preference number: 6 (lower is better) Translates to: GASRILQSNFAP*VPCTVKCCSNW Trigger: CCAATTACTACAACATTTTACAGTGCACGGAACCCAAGGAGCAAAGTTACTTTGCAAAATTCTTGACGCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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| CDS CAA 90 bp | AGTAATTGGTACATCCTGTCACATTCTGGAAGAAAGATGAACCAGTaGTTACATCTCCATCTAGCAGCTTATCCAGGATTTCAAAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: SNWYILSHSGRKMNQ*LHLHLAAYPGFQRP Trigger: AGGCCTTTGAAATCCTGGATAAGCTGCTAGATGGAGATGTAACAACTGGTTCATCTTTCTTCCAGAATGTGACAGGATGTACCAATTACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000166545.2 ENSMUST00000204674.3 |
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| CDS CAA 90 bp | AGTAATTGGTACATCCTGTCACATTCTGGAAGAAAGATGAACCAGTaGTTACATCTCCATCTAGCAGCTTATCCAGGATCGATTCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: SNWYILSHSGRKMNQ*LHLHLAAYPGSIQD Trigger: ATCCTGAATCGATCCTGGATAAGCTGCTAGATGGAGATGTAACAACTGGTTCATCTTTCTTCCAGAATGTGACAGGATGTACCAATTACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203101.3 |
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| CDS GCA 72 bp | AGAATTTTGCAAAGTAACTTTGCTCCTTGGGTTCCGTaGACTGTAAAATGTTGTAGTAATTGGTACATCCTG | + |
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Preference number: 6 (lower is better) Translates to: RILQSNFAPWVP*TVKCCSNWYIL Trigger: CAGGATGTACCAATTACTACAACATTTTACAGTGCACGGAACCCAAGGAGCAAAGTTACTTTGCAAAATTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000166545.2 ENSMUST00000203101.3 ENSMUST00000204674.3 |
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