Pregenerated sensors for CPTP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029073Ensembl transcript IDs: ENSMUST00000030950.8, ENSMUST00000151961.2
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTAAGGCTCAAGATGAACTCAGGAGGACACACAGTGGCTGGGCATaGTGGCTGCGAGGAAGACAGCTCCAGGGTCCCGCGTCCTTACAC | + |
|
Preference number: 1 (lower is better) Translates to: SKAQDELRRTHSGWA*WLRGRQLQGPASLH Trigger: GTGTAAGGACGCGGGACCCTGGAGCTGTCTTCCTCGCAGCCAGCATGCCCAGCCACTGTGTGTCCTCCTGAGTTCATCTTGAGCCTTAGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 90 bp | GATTGTACACAGGAGGTAGAGCAACCTTGGGTTGTTGCAGGTCCATaGCACCCCCAGCCCCCATCTTCTCCATTTGCCATCTGCACTTCC | + |
|
Preference number: 1 (lower is better) Translates to: DCTQEVEQPWVVAGP*HPQPPSSPFAICTS Trigger: GGAAGTGCAGATGGCAAATGGAGAAGATGGGGGCTGGGGGTGTCATGGACCTGCAACAACCCAAGGTTGCTCTACCTCCTGTGTACAATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 90 bp | GACAAGGGCCTGTTTGGTATGCAGAGAGACTATCAAGAAAGCAGGTaGAGGGCAGGGAAAGAGCCTTCAGCACTCATGCCACTGCCAGAG | + |
|
Preference number: 1 (lower is better) Translates to: DKGLFGMQRDYQESR*RAGKEPSALMPLPE Trigger: CTCTGGCAGTGGCATGAGTGCTGAAGGCTCTTTCCCTGCCCTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 90 bp | GGTTGTTGCAGGTCCATGACACCCCCAGCCCCCATCTTCTCCATTTaGCATCTGCACTTCCATCAAGACTGCCTGAACACACACATAAGC | + |
|
Preference number: 1 (lower is better) Translates to: GCCRSMTPPAPIFSI*HLHFHQDCLNTHIS Trigger: GCTTATGTGTGTGTTCAGGCAGTCTTGATGGAAGTGCAGATGGCAAATGGAGAAGATGGGGGCTGGGGGTGTCATGGACCTGCAACAACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CCA 90 bp | CCAGTGGAAAAGCGTAGGGTCTTATACACTGGGCATCAGCCATGCTaGGTATGGCCATCTGACAGACAAAGGGGCCTAGTTTCCTTCCAC | + |
|
Preference number: 1 (lower is better) Translates to: PVEKRRVLYTGHQPC*VWPSDRQRGLVSFH Trigger: GTGGAAGGAAACTAGGCCCCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTGATGCCCAGTGTATAAGACCCTACGCTTTTCCACTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 90 bp | CACCATTTCAGATTGTACACAGGAGGTAGAGCAACCTTGGGTTGTTaGAGGTCCATGACACCCCCAGCCCCCATCTTCTCCATTTGCCAT | + |
|
Preference number: 1 (lower is better) Translates to: HHFRLYTGGRATLGC*RSMTPPAPIFSICH Trigger: ATGGCAAATGGAGAAGATGGGGGCTGGGGGTGTCATGGACCTGCAACAACCCAAGGTTGCTCTACCTCCTGTGTACAATCTGAAATGGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 90 bp | AGACCAGTGGAAAAGCGTAGGGTCTTATACACTGGGCATCAGCCATaGTGGGTATGGCCATCTGACAGACAAAGGGGCCTAGTTTCCTTC | + |
|
Preference number: 1 (lower is better) Translates to: RPVEKRRVLYTGHQP*WVWPSDRQRGLVSF Trigger: GAAGGAAACTAGGCCCCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTGATGCCCAGTGTATAAGACCCTACGCTTTTCCACTGGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CCA 90 bp | GAAAAGCGTAGGGTCTTATACACTGGGCATCAGCCATGCTGGGTATaGCCATCTGACAGACAAAGGGGCCTAGTTTCCTTCCACCAGTCA | + |
|
Preference number: 1 (lower is better) Translates to: EKRRVLYTGHQPCWV*PSDRQRGLVSFHQS Trigger: TGACTGGTGGAAGGAAACTAGGCCCCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTGATGCCCAGTGTATAAGACCCTACGCTTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 90 bp | ACTGCCAGAGGAACTTCATCTTACCCAAAGACAGCTTTTGGAATATaGAGAGGCCCCAAGCATGTAGGCCCAGGACTGTTTGCCTGGCAC | + |
|
Preference number: 1 (lower is better) Translates to: TARGTSSYPKTAFGI*RGPKHVGPGLFAWH Trigger: GTGCCAGGCAAACAGTCCTGGGCCTACATGCTTGGGGCCTCTTCATATTCCAAAAGCTGTCTTTGGGTAAGATGAAGTTCCTCTGGCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 90 bp | CAACAAGCTCAGCTTTCAGGGGTGATAGTAGTATCCAGAAAGCACTaGTGTGGGAGTAGTCCCAGGTTGCCTAAACCCAGTTCTGAGCAG | + |
|
Preference number: 1 (lower is better) Translates to: QQAQLSGVIVVSRKH*CGSSPRLPKPSSEQ Trigger: CTGCTCAGAACTGGGTTTAGGCAACCTGGGACTACTCCCACAGCAGTGCTTTCTGGATACTACTATCACCCCTGAAAGCTGAGCTTGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 90 bp | CAAGGACAGATACATGGCAACTCCTTCAGTCCTGAACATGTCTCATaGTTCACGTTGCCCTTTGAGTCTTCAGGACTGGAGACACATGCT | + |
|
Preference number: 1 (lower is better) Translates to: QGQIHGNSFSPEHVS*FTLPFESSGLETHA Trigger: AGCATGTGTCTCCAGTCCTGAAGACTCAAAGGGCAACGTGAATCATGAGACATGTTCAGGACTGAAGGAGTTGCCATGTATCTGTCCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 90 bp | GATTTCATAGTTTCCATTTCCCAGGAGACAAGGGCCTGTTTGGTATaGAGAGAGACTATCAAGAAAGCAGGTGAAGGGCAGGGAAAGAGC | + |
|
Preference number: 1 (lower is better) Translates to: DFIVSISQETRACLV*RETIKKAGEGQGKS Trigger: GCTCTTTCCCTGCCCTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTCTCCTGGGAAATGGAAACTATGAAATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 90 bp | GTGGAGTACCAAGAAGAAACCACTAGGTTGTACCCTCTAGGTTGTTaGCATGAAGAAAGCATCTCTAGTTTTCTTCCCGCTTTGTCACAC | + |
|
Preference number: 1 (lower is better) Translates to: VEYQEETTRLYPLGC*HEESISSFLPALSH Trigger: GTGTGACAAAGCGGGAAGAAAACTAGAGATGCTTTCTTCATGGCAACAACCTAGAGGGTACAACCTAGTGGTTTCTTCTTGGTACTCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR TCA 90 bp | AGTTTCCTTCCACCAGTCATGTCCTCAGTCACCTGGGTACCAGACAACAGGAGCTGTCTCATCCCGGACTaGGAGGACGGCCAGCACCCA | + |
|
Preference number: 2 (lower is better) Translates to: SFLPPVMSSVTWVPDNRSCLIPD*EDGQHP Trigger: TGGGTGCTGGCCGTCCTCTCAGTCCGGGATGAGACA...GCTCCTGTTGTCTGGTACCCAGGTGACTGAGGACATGACTGGTGGAAGGAAACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CCA 90 bp | TTATACACTGGGCATCAGCCATGCTGGGTATGGCCATCTGACAGACAAAGGGGCCAGGAGGACACACAGTaGCTGGGCATGCTGGCTGCG | + |
|
Preference number: 2 (lower is better) Translates to: LYTGHQPCWVWPSDRQRGQEDTQ*LGMLAA Trigger: CGCAGCCAGCATGCCCAGCCACTGTGTGTCCTCCTG...GCCCCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTGATGCCCAGTGTATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR GCA 90 bp | AGACAAGGGCCTGTTTGGTATGCAGAGAGACTATCAAGAAAGCAGGTGAAGGGCGCTGGGCATGCTGGCTaGGAGGAAGACAGCTCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: RQGPVWYAERLSRKQVKGAGHAG*EEDSSR Trigger: CCTGGAGCTGTCTTCCTCGCAGCCAGCATGCCCAGC...GCCCTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CAA 90 bp | GCGTCCTTACACCATTTCAGATTGTACACAGGAGGTAGAGCAACCTaGGGTTGTTGCAGGTCCATGACACCCCCAGCCCCCATCTTCTCC | + |
|
Preference number: 2 (lower is better) Translates to: ASLHHFRLYTGGRAT*GCCRSMTPPAPIFS Trigger: GGAGAAGATGGGGGCTGGGGGTGTCATGGACCTGCAACAACCCAAGGTTGCTCTACCTCCTGTGTACAATCTGAAATGGTGTAAGGACGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CAA 90 bp | CGAGGAAGACAGCTCCAGGGTCCCGCGTCCTTACACCATTTCAGATaGTACACAGGAGGTAGAGCAACCTTGGGTTGTTGCAGGTCCATG | + |
|
Preference number: 2 (lower is better) Translates to: RGRQLQGPASLHHFR*YTGGRATLGCCRSM Trigger: CATGGACCTGCAACAACCCAAGGTTGCTCTACCTCCTGTGTACAATCTGAAATGGTGTAAGGACGCGGGACCCTGGAGCTGTCTTCCTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CAA 90 bp | GGGTTGTTGCAGGTCCATGACACCCCCAGCCCCCATCTTCTCCATTaGCCATCTGCACTTCCATCAAGACTGCCTGAACACACACATAAG | + |
|
Preference number: 2 (lower is better) Translates to: GLLQVHDTPSPHLLH*PSALPSRLPEHTHK Trigger: CTTATGTGTGTGTTCAGGCAGTCTTGATGGAAGTGCAGATGGCAAATGGAGAAGATGGGGGCTGGGGGTGTCATGGACCTGCAACAACCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR TCA 90 bp | GGACTGGAGACACATGCTTTAGCCTTATTCCTAGGGTTAGCTCCCTCCCCACCTACACACCAGCTATGCTaGGGACACTGTCCTAGGGTT | + |
|
Preference number: 2 (lower is better) Translates to: GLETHALALFLGLAPSPPTHQLC*GHCPRV Trigger: AACCCTAGGACAGTGTCCTCAGCATAGCTGGTGTGT...AGGTGGGGAGGGAGCTAACCCTAGGAATAAGGCTAAAGCATGTGTCTCCAGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR GCA 90 bp | AGGAGACAAGGGCCTGTTTGGTATGCAGAGAGACTATCAAGAAAGCAGGTGAAGCACAGTGGCTGGGCATaGTGGCTGCGAGGAAGACAG | + |
|
Preference number: 2 (lower is better) Translates to: RRQGPVWYAERLSRKQVKHSGWA*WLRGRQ Trigger: CTGTCTTCCTCGCAGCCAGCATGCCCAGCCACTGTG...CTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CCA 90 bp | AGTTTCCTTCCACCAGTCATGTCCTCAGTCACCTGGGTACCAGACAACAGGAGCAGCACCCACCTTTCTTaGTTCAGCTGCCTAACACCT | + |
|
Preference number: 2 (lower is better) Translates to: SFLPPVMSSVTWVPDNRSSTHLS*FSCLTP Trigger: AGGTGTTAGGCAGCTGAACCAAGAAAGGTGGGTGCT...GCTCCTGTTGTCTGGTACCCAGGTGACTGAGGACATGACTGGTGGAAGGAAACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR GCA 90 bp | CCGCTTTGTCACACAGTGCCTGGGTTATCTTCAGACCTATTTTCCCACTTAGCCGGAGTAGTCCCAGGTTaGCTAAACCCAGTTCTGAGC | + |
|
Preference number: 2 (lower is better) Translates to: PLCHTVPGLSSDLFSHLAGVVPG*LNPVLS Trigger: GCTCAGAACTGGGTTTAGGCAACCTGGGACTACTCC...GGCTAAGTGGGAAAATAGGTCTGAAGATAACCCAGGCACTGTGTGACAAAGCGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CCA 90 bp | TTATTCCTAGGGTTAGCTCCCTCCCCACCTATATATTTCTATGTTCTTCCCCCACAGCCATGCTGGGTATaGCCATCTGACAGACAAAGG | + |
|
Preference number: 2 (lower is better) Translates to: LFLGLAPSPPIYFYVLPPQPCWV*PSDRQR Trigger: CCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTG...TGGGGGAAGAACATAGAAATATATAGGTGGGGAGGGAGCTAACCCTAGGAATAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CAA 90 bp | GCTATTGATTTCATAGTTTCCATTTCCCAGGAGACAAGGGCCTGTTaGGTATGCAGAGAGACTATCAAGAAAGCAGGTGAAGGGCAGGGA | + |
|
Preference number: 2 (lower is better) Translates to: AIDFIVSISQETRAC*VCRETIKKAGEGQG Trigger: TCCCTGCCCTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTCTCCTGGGAAATGGAAACTATGAAATCAATAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR TCA 90 bp | TTATTCCTAGGGTTAGCTCCCTCCCCACCTATATATTTCTATGTTCTTCCCCCATATCAAGAAAGCAGGTaGAGGGCAGGGAAAGAGCCT | + |
|
Preference number: 2 (lower is better) Translates to: LFLGLAPSPPIYFYVLPPYQESR*RAGKEP Trigger: AGGCTCTTTCCCTGCCCTTCACCTGCTTTCTTGATA...TGGGGGAAGAACATAGAAATATATAGGTGGGGAGGGAGCTAACCCTAGGAATAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CCA 90 bp | GAGGAACTTCATCTTACCCAAAGACAGCTTTTGGAATATGAAGAGGCCCCAAGCACACATAAGCTGAAGTaGAGGGCAAAACTGGAGTTC | + |
|
Preference number: 2 (lower is better) Translates to: EELHLTQRQLLEYEEAPSTHKLK*RAKLEF Trigger: GAACTCCAGTTTTGCCCTCCACTTCAGCTTATGTGT...GCTTGGGGCCTCTTCATATTCCAAAAGCTGTCTTTGGGTAAGATGAAGTTCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR TCA 90 bp | TTATTCCTAGGGTTAGCTCCCTCCCCACCTATATATTTCTATGTTCTTCCCCCAACAGCTTTTGGAATATaGAGAGGCCCCAAGCATGTA | + |
|
Preference number: 2 (lower is better) Translates to: LFLGLAPSPPIYFYVLPPTAFGI*RGPKHV Trigger: TACATGCTTGGGGCCTCTTCATATTCCAAAAGCTGT...TGGGGGAAGAACATAGAAATATATAGGTGGGGAGGGAGCTAACCCTAGGAATAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR GCA 90 bp | TTATTCCTAGGGTTAGCTCCCTCCCCACCTATATATTTCTATGTTCTTCCCCCACTTTCTTGGTTCAGCTaGCTAACACCTTTCCTATCA | + |
|
Preference number: 2 (lower is better) Translates to: LFLGLAPSPPIYFYVLPPLSWFS*LTPFLS Trigger: TGATAGGAAAGGTGTTAGGCAGCTGAACCAAGAAAG...TGGGGGAAGAACATAGAAATATATAGGTGGGGAGGGAGCTAACCCTAGGAATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR GCA 90 bp | ATTAAGATACATCAAGGACAGATACATGGCAACTCCTTCAGTCCTGAACATGTCCAGCACTCATGCCACTaGCAGAGGAACTTCATCTTA | + |
|
Preference number: 2 (lower is better) Translates to: IKIHQGQIHGNSFSPEHVQHSCH*QRNFIL Trigger: TAAGATGAAGTTCCTCTGGCAGTGGCATGAGTGCTG...GACATGTTCAGGACTGAAGGAGTTGCCATGTATCTGTCCTTGATGTATCTTAAT 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CCA 90 bp | CTAGTAGTATGTGACTTTTGTTATAAGCATGGTCAGACAATGTACAGCCCAAGCTCCTATCACAGACTGTaGCTCTCAACAAGCTCAGCT | + |
|
Preference number: 2 (lower is better) Translates to: LVVCDFCYKHGQTMYSPSSYHRL*LSTSSA Trigger: AGCTGAGCTTGTTGAGAGCCACAGTCTGTGATAGGA...GCTTGGGCTGTACATTGTCTGACCATGCTTATAACAAAAGTCACATACTACTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CCA 90 bp | CTAGTAGTATGTGACTTTTGTTATAAGCATGGTCAGACAATGTACAGCCCAAGCGACATCTTAGAATCTTaGGGGTGCATGTGCTCTAAG | + |
|
Preference number: 2 (lower is better) Translates to: LVVCDFCYKHGQTMYSPSDILES*GCMCSK Trigger: CTTAGAGCACATGCACCCCCAAGATTCTAAGATGTC...GCTTGGGCTGTACATTGTCTGACCATGCTTATAACAAAAGTCACATACTACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 72 bp | CAAGATGAACTCAGGAGGACACACAGTGGCTGGGCATaGTGGCTGCGAGGAAGACAGCTCCAGGGTCCCGCG | + |
|
Preference number: 3 (lower is better) Translates to: QDELRRTHSGWA*WLRGRQLQGPA Trigger: CGCGGGACCCTGGAGCTGTCTTCCTCGCAGCCAGCATGCCCAGCCACTGTGTGTCCTCCTGAGTTCATCTTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 72 bp | AGGGCAAAACTGGAGTTCCATTGTCTCATCCCGGACTaGGAGGACGGCCAGCACCCACCTTTCTTGGTTCAG | + |
|
Preference number: 3 (lower is better) Translates to: RAKLEFHCLIPD*EDGQHPPFLVQ Trigger: CTGAACCAAGAAAGGTGGGTGCTGGCCGTCCTCTCAGTCCGGGATGAGACAATGGAACTCCAGTTTTGCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 72 bp | AGATTGTACACAGGAGGTAGAGCAACCTTGGGTTGTTaGAGGTCCATGACACCCCCAGCCCCCATCTTCTCC | + |
|
Preference number: 3 (lower is better) Translates to: RLYTGGRATLGC*RSMTPPAPIFS Trigger: GGAGAAGATGGGGGCTGGGGGTGTCATGGACCTGCAACAACCCAAGGTTGCTCTACCTCCTGTGTACAATCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CCA 72 bp | TCCCGGACTGAGAGGACGGCCAGCACCCACCTTTCTTaGTTCAGCTGCCTAACACCTTTCCTATCACAGACT | + |
|
Preference number: 3 (lower is better) Translates to: SRTERTASTHLS*FSCLTPFLSQT Trigger: AGTCTGTGATAGGAAAGGTGTTAGGCAGCTGAACCAAGAAAGGTGGGTGCTGGCCGTCCTCTCAGTCCGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 72 bp | GCAGGTGAAGGGCAGGGAAAGAGCCTTCAGCACTCATaGCACTGCCAGAGGAACTTCATCTTACCCAAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: AGEGQGKSLQHS*HCQRNFILPKD Trigger: GTCTTTGGGTAAGATGAAGTTCCTCTGGCAGTGGCATGAGTGCTGAAGGCTCTTTCCCTGCCCTTCACCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 72 bp | GAAAAGCGTAGGGTCTTATACACTGGGCATCAGCCATaGTGGGTATGGCCATCTGACAGACAAAGGGGCCTA | + |
|
Preference number: 3 (lower is better) Translates to: EKRRVLYTGHQP*WVWPSDRQRGL Trigger: TAGGCCCCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTGATGCCCAGTGTATAAGACCCTACGCTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CCA 72 bp | AGGGTCTTATACACTGGGCATCAGCCATGCTGGGTATaGCCATCTGACAGACAAAGGGGCCTAGTTTCCTTC | + |
|
Preference number: 3 (lower is better) Translates to: RVLYTGHQPCWV*PSDRQRGLVSF Trigger: GAAGGAAACTAGGCCCCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTGATGCCCAGTGTATAAGACCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CCA 72 bp | AAGCGTAGGGTCTTATACACTGGGCATCAGCCATGCTaGGTATGGCCATCTGACAGACAAAGGGGCCTAGTT | + |
|
Preference number: 3 (lower is better) Translates to: KRRVLYTGHQPC*VWPSDRQRGLV Trigger: AACTAGGCCCCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTGATGCCCAGTGTATAAGACCCTACGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CAA 90 bp | GGACTGGAGACACATGCTTTAGCCTTATTCCTAGGGTTAGCTCCCTCCCCACCTGAGACAAGGGCCTGTTaGGTATGCAGAGAGACTATC | + |
|
Preference number: 3 (lower is better) Translates to: GLETHALALFLGLAPSPPETRAC*VCRETI Trigger: GATAGTCTCTCTGCATACCAAACAGGCCCTTGTCTC...AGGTGGGGAGGGAGCTAACCCTAGGAATAAGGCTAAAGCATGTGTCTCCAGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CAA 90 bp | AAAGACAGCTTTTGGAATATGAAGAGGCCCCAAGCATGTAGGCCCAGGACTGTTGGGAGTAGTCCCAGGTaGCCTAAACCCAGTTCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: KDSFWNMKRPQACRPRTVGSSPR*PKPSSE Trigger: CTCAGAACTGGGTTTAGGCAACCTGGGACTACTCCC...AACAGTCCTGGGCCTACATGCTTGGGGCCTCTTCATATTCCAAAAGCTGTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CAA 90 bp | CAGACAACAGGAGCAGCAGGGCTGGCTAGAGAGGTATGGTTTGGTCAGTTAGTACCCCATCTTCTCCATTaGCCATCTGCACTTCCATCA | + |
|
Preference number: 3 (lower is better) Translates to: QTTGAAGLAREVWFGQLVPHLLH*PSALPS Trigger: TGATGGAAGTGCAGATGGCAAATGGAGAAGATGGGG...TACTAACTGACCAAACCATACCTCTCTAGCCAGCCCTGCTGCTCCTGTTGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 72 bp | CTGTTTGGTATGCAGAGAGACTATCAAGAAAGCAGGTaGAGGGCAGGGAAAGAGCCTTCAGCACTCATGCCA | + |
|
Preference number: 3 (lower is better) Translates to: LFGMQRDYQESR*RAGKEPSALMP Trigger: TGGCATGAGTGCTGAAGGCTCTTTCCCTGCCCTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 72 bp | GTTTCCATTTCCCAGGAGACAAGGGCCTGTTTGGTATaGAGAGAGACTATCAAGAAAGCAGGTGAAGGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: VSISQETRACLV*RETIKKAGEGQ Trigger: CTGCCCTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTCTCCTGGGAAATGGAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CAA 90 bp | AGTTTCCTTCCACCAGTCATGTCCTCAGTCACCTGGGTACCAGACAACAGGAGCTTACACCATTTCAGATaGTACACAGGAGGTAGAGCA | + |
|
Preference number: 3 (lower is better) Translates to: SFLPPVMSSVTWVPDNRSLHHFR*YTGGRA Trigger: TGCTCTACCTCCTGTGTACAATCTGAAATGGTGTAA...GCTCCTGTTGTCTGGTACCCAGGTGACTGAGGACATGACTGGTGGAAGGAAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR-3UTR CAA 90 bp | AGACAAGGGCCTGTTTGGTATGCAGAGAGACTATCAAGAAAGCAGGTGAAGGGCACCCAAAGACAGCTTTaGGAATATGAAGAGGCCCCA | + |
|
Preference number: 3 (lower is better) Translates to: RQGPVWYAERLSRKQVKGTQRQL*EYEEAP Trigger: TGGGGCCTCTTCATATTCCAAAAGCTGTCTTTGGGT...GCCCTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 72 bp | CACTTCCATCAAGACTGCCTGAACACACACATAAGCTaGAGTGGAGGGCAAAACTGGAGTTCCATTGTCTCA | + |
|
Preference number: 3 (lower is better) Translates to: HFHQDCLNTHIS*SGGQNWSSIVS Trigger: TGAGACAATGGAACTCCAGTTTTGCCCTCCACTTCAGCTTATGTGTGTGTTCAGGCAGTCTTGATGGAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 72 bp | ATACATGGCAACTCCTTCAGTCCTGAACATGTCTCATaGTTCACGTTGCCCTTTGAGTCTTCAGGACTGGAG | + |
|
Preference number: 3 (lower is better) Translates to: IHGNSFSPEHVS*FTLPFESSGLE Trigger: CTCCAGTCCTGAAGACTCAAAGGGCAACGTGAATCATGAGACATGTTCAGGACTGAAGGAGTTGCCATGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 72 bp | ACTCCTTCAGTCCTGAACATGTCTCATGATTCACGTTaGCCTTTGAGTCTTCAGGACTGGAGACACATGCTT | + |
|
Preference number: 3 (lower is better) Translates to: TPSVLNMSHDSR*PLSLQDWRHML Trigger: AAGCATGTGTCTCCAGTCCTGAAGACTCAAAGGGCAACGTGAATCATGAGACATGTTCAGGACTGAAGGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CCA 72 bp | ATCTCTAGTTTTCTTCCCGCTTTGTCACACAGTGCCTaGGTTATCTTCAGACCTATTTTCCCACTTAGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: ISSFLPALSHSA*VIFRPIFPLSP Trigger: AGGGCTAAGTGGGAAAATAGGTCTGAAGATAACCCAGGCACTGTGTGACAAAGCGGGAAGAAAACTAGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 72 bp | GGGTGCATGTGCTCTAAGAGGCCATCTTCAGAAGGCTaGTGTAACTATTCTATAGAAGCTGTGAAACAGGTT | + |
|
Preference number: 3 (lower is better) Translates to: GCMCSKRPSSEG*CNYSIEAVKQV Trigger: AACCTGTTTCACAGCTTCTATAGAATAGTTACATCAGCCTTCTGAAGATGGCCTCTTAGAGCACATGCACCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR GCA 72 bp | ATACTACATATATCACAGTGCTTAATGGAAGAGATATaGCCCAAAGTTTGCATTCACACACACCAGCTATGC | + |
|
Preference number: 3 (lower is better) Translates to: ILHISQCLMEEI*PKVCIHTHQLC Trigger: GCATAGCTGGTGTGTGTGAATGCAAACTTTGGGGCATATCTCTTCCATTAAGCACTGTGATATATGTAGTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR TCA 72 bp | CAAAATGGAGGTAACACAGATCTCATAGTGTATGTATaGTTAAGATACATCAAGGACAGATACATGGCAACT | + |
|
Preference number: 3 (lower is better) Translates to: QNGGNTDLIVYV*LRYIKDRYMAT Trigger: AGTTGCCATGTATCTGTCCTTGATGTATCTTAATCATACATACACTATGAGATCTGTGTTACCTCCATTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR CCA 90 bp | CACCAGTCATGTCCTCAGTCACCTGGGTACCAGACAACAGGAGCAGCAGGGCTGGTAGTGTTCAGACTGTaGGCTGCTTCTCAGACGCTC | + |
|
Preference number: 4 (lower is better) Translates to: HQSCPQSPGYQTTGAAGLVVFRL*AASQTL Trigger: GAGCGTCTGAGAAGCAGCCCACAGTCTGAACACTAC...CAGCCCTGCTGCTCCTGTTGTCTGGTACCCAGGTGACTGAGGACATGACTGGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR TCA 90 bp | CATGACACCCCCAGCCCCCATCTTCTCCATTTGCCATCTGCACTTCCATCAAGACATACACATGCTCAATaGAGGGCAGGGCCTCCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: HDTPSPHLLHLPSALPSRHTHAQ*RAGPPP Trigger: TGGGGGAGGCCCTGCCCTTCATTGAGCATGTGTATG...TCTTGATGGAAGTGCAGATGGCAAATGGAGAAGATGGGGGCTGGGGGTGTCATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CAA 72 bp | CAGGTCCATGACACCCCCAGCCCCCATCTTCTCCATTaGCCATCTGCACTTCCATCAAGACTGCCTGAACAC | + |
|
Preference number: 4 (lower is better) Translates to: QVHDTPSPHLLH*PSALPSRLPEH Trigger: GTGTTCAGGCAGTCTTGATGGAAGTGCAGATGGCAAATGGAGAAGATGGGGGCTGGGGGTGTCATGGACCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR GCA 90 bp | AGACAAGGGCCTGTTTGGTATGCAGAGAGACTATCAAGAAAGCAGGTGAAGGGCCATCCTCAGAGCTGGTaGGCAGGCCGTCCAGGAACA | + |
|
Preference number: 4 (lower is better) Translates to: RQGPVWYAERLSRKQVKGHPQSW*AGRPGT Trigger: TGTTCCTGGACGGCCTGCGCACCAGCTCTGAGGATG...GCCCTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR GCA 90 bp | GGACTGGAGACACATGCTTTAGCCTTATTCCTAGGGTTAGCTCCCTCCCCACCTCCTCGAGGAAGACCTTaGGTGAGGGTAAGGCACAGA | + |
|
Preference number: 4 (lower is better) Translates to: GLETHALALFLGLAPSPPPRGRP*VRVRHR Trigger: TCTGTGCCTTACCCTCACGCAAGGTCTTCCTCGAGG...AGGTGGGGAGGGAGCTAACCCTAGGAATAAGGCTAAAGCATGTGTCTCCAGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR GCA 90 bp | TTATACACTGGGCATCAGCCATGCTGGGTATGGCCATCTGACAGACAAAGGGGCCCCCAGCATCTCCACTaGTTGCTCAGTGGACTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LYTGHQPCWVWPSDRQRGPQHLH*LLSGLH Trigger: ATGGAGTCCACTGAGCAAGCAGTGGAGATGCTGGGG...GCCCCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTGATGCCCAGTGTATAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR CCA 90 bp | AGTTTCCTTCCACCAGTCATGTCCTCAGTCACCTGGGTACCAGACAACAGGAGCCCTCACTGCAGAGTGTaGAGGTACGAGCATCCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: SFLPPVMSSVTWVPDNRSPHCRV*RYEHPQ Trigger: CTGAGGATGCTCGTACCTCCACACTCTGCAGTGAGG...GCTCCTGTTGTCTGGTACCCAGGTGACTGAGGACATGACTGGTGGAAGGAAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CAA 72 bp | GTATCCAGAAAGCACTGCTGTGGGAGTAGTCCCAGGTaGCCTAAACCCAGTTCTGAGCAGGGTAAGTCCACG | + |
|
Preference number: 4 (lower is better) Translates to: VSRKHCCGSSPR*PKPSSEQGKST Trigger: CGTGGACTTACCCTGCTCAGAACTGGGTTTAGGCAACCTGGGACTACTCCCACAGCAGTGCTTTCTGGATAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CAA 72 bp | CAGCTCCAGGGTCCCGCGTCCTTACACCATTTCAGATaGTACACAGGAGGTAGAGCAACCTTGGGTTGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: QLQGPASLHHFR*YTGGRATLGCC Trigger: GCAACAACCCAAGGTTGCTCTACCTCCTGTGTACAATCTGAAATGGTGTAAGGACGCGGGACCCTGGAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR TCA 90 bp | AGAAAGCACTGCTGTGGGAGTAGTCCCAGGTTGCCTAAACCCAGTTCTGAGCAGATCCTTGGAAATGAATaGGAAGACGGCCCCCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: RKHCCGSSPRLPKPSSEQILGNE*EDGPQA Trigger: AGCCTGGGGGCCGTCTTCTCATTCATTTCCAAGGAT...CTGCTCAGAACTGGGTTTAGGCAACCTGGGACTACTCCCACAGCAGTGCTTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR TCA 90 bp | TTATTCCTAGGGTTAGCTCCCTCCCCACCTATATATTTCTATGTTCTTCCCCCAGTCCGGCAGCCTGAGTaGGGGTGTCGGGGATGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LFLGLAPSPPIYFYVLPPVRQPE*GCRGWE Trigger: TTCCCATCCCCGACACCCTCACTCAGGCTGCCGGAC...TGGGGGAAGAACATAGAAATATATAGGTGGGGAGGGAGCTAACCCTAGGAATAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR TCA 90 bp | ACAGGAGCAGCAGGGCTGGCTAGAGAGGTATGGTTTGGTCAGTTAGTATTGACAGGCTGTTTAGAAACCTaGCAAGTCCCTTCCAGCCGG | + |
|
Preference number: 4 (lower is better) Translates to: TGAAGLAREVWFGQLVLTGCLET*QVPSSR Trigger: CCGGCTGGAAGGGACTTGTCAGGTTTCTAAACAGCC...TGTCAATACTAACTGACCAAACCATACCTCTCTAGCCAGCCCTGCTGCTCCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR TCA 90 bp | GAGGAACTTCATCTTACCCAAAGACAGCTTTTGGAATATGAAGAGGCCCCAAGCCGGGGATGGGAACGGTaGTCCATGTCCACCAGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: EELHLTQRQLLEYEEAPSRGWER*SMSTSL Trigger: CAAGCTGGTGGACATGGATCACCGTTCCCATCCCCG...GCTTGGGGCCTCTTCATATTCCAAAAGCTGTCTTTGGGTAAGATGAAGTTCCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR CCA 90 bp | TTATACACTGGGCATCAGCCATGCTGGGTATGGCCATCTGACAGACAAAGGGGCCCACTGCTTGCTCAGTaGACTCCATATTCATGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LYTGHQPCWVWPSDRQRGPLLAQ*TPYSWP Trigger: AGGCCATGAATATGGAGTCCACTGAGCAAGCAGTGG...GCCCCTTTGTCTGTCAGATGGCCATACCCAGCATGGCTGATGCCCAGTGTATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR CCA 90 bp | CAGACAACAGGAGCAGCAGGGCTGGCTAGAGAGGTATGGTTTGGTCAGTTAGTATGGACTCCATATTCATaGCCTCGAGGAAGACCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: QTTGAAGLAREVWFGQLVWTPYS*PRGRPC Trigger: GCAAGGTCTTCCTCGAGGCCATGAATATGGAGTCCA...TACTAACTGACCAAACCATACCTCTCTAGCCAGCCCTGCTGCTCCTGTTGTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR GCA 90 bp | AGGAGACAAGGGCCTGTTTGGTATGCAGAGAGACTATCAAGAAAGCAGGTGAAGTTGTCAGTGAGACACTaGTTGAAGCTGACCAGGACG | + |
|
Preference number: 4 (lower is better) Translates to: RRQGPVWYAERLSRKQVKLSVRH*LKLTRT Trigger: CGTCCTGGTCAGCTTCAAGCAGTGTCTCACTGACAA...CTTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTCTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR TCA 90 bp | ATTAAGATACATCAAGGACAGATACATGGCAACTCCTTCAGTCCTGAACATGTCCCACATCCTTGGAAATaGATGAGAAGACGGCCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: IKIHQGQIHGNSFSPEHVPHPWK*MRRRPP Trigger: TGGGGGCCGTCTTCTCATTCATTTCCAAGGATGTGG...GACATGTTCAGGACTGAAGGAGTTGCCATGTATCTGTCCTTGATGTATCTTAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| 3UTR CAA 72 bp | TTCATAGTTTCCATTTCCCAGGAGACAAGGGCCTGTTaGGTATGCAGAGAGACTATCAAGAAAGCAGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: FIVSISQETRAC*VCRETIKKAGE Trigger: TTCACCTGCTTTCTTGATAGTCTCTCTGCATACCAAACAGGCCCTTGTCTCCTGGGAAATGGAAACTATGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS CCA 90 bp | CCTCCCCCAGCATCTCCACTGCTTGCTCAGTGGACTCCATATTCATaGCCTCGAGGAAGACCTTGCGTGAGGGTAAGGCACAGAAGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: PPPASPLLAQWTPYS*PRGRPCVRVRHRRP Trigger: TGGCCTTCTGTGCCTTACCCTCACGCAAGGTCTTCCTCGAGGCCATGAATATGGAGTCCACTGAGCAAGCAGTGGAGATGCTGGGGGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||
| CDS CCA 90 bp | CTCGTAGGCTACCATGGACTGCAAGCTAGCGTAGTGTTCAGACTGTaGGCTGCTTCTCAGACGCTCCATGATCTGCAGCTTTGCGACCAC | + |
|
Preference number: 5 (lower is better) Translates to: LVGYHGLQASVVFRL*AASQTLHDLQLCDH Trigger: GTGGTCGCAAAGCTGCAGATCATGGAGCGTCTGAGAAGCAGCCCACAGTCTGAACACTACGCTAGCTTGCAGTCCATGGTAGCCTACGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||
| CDS GCA 90 bp | ATACACATGCTCAATGAAGGGCAGGGCCTCCCCCAGCATCTCCACTaGTTGCTCAGTGGACTCCATATTCATGGCCTCGAGGAAGACCTT | + |
|
Preference number: 5 (lower is better) Translates to: IHMLNEGQGLPQHLH*LLSGLHIHGLEEDL Trigger: AAGGTCTTCCTCGAGGCCATGAATATGGAGTCCACTGAGCAAGCAGTGGAGATGCTGGGGGAGGCCCTGCCCTTCATTGAGCATGTGTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||
| CDS-3UTR CAA 90 bp | AAAGACAGCTTTTGGAATATGAAGAGGCCCCAAGCATGTAGGCCCAGGACTGTTAGCAGCACCTCTCCCTaGTCAGTGAGACACTGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: KDSFWNMKRPQACRPRTVSSTSP*SVRHCL Trigger: CAAGCAGTGTCTCACTGACAAGGGAGAGGTGCTGCT...AACAGTCCTGGGCCTACATGCTTGGGGCCTCTTCATATTCCAAAAGCTGTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS-3UTR CAA 90 bp | ATTAAGATACATCAAGGACAGATACATGGCAACTCCTTCAGTCCTGAACATGTCTTTGCGACCACATCCTaGGAAATGAATGAGAAGACG | + |
|
Preference number: 5 (lower is better) Translates to: IKIHQGQIHGNSFSPEHVFATTS*EMNEKT Trigger: CGTCTTCTCATTCATTTCCAAGGATGTGGTCGCAAA...GACATGTTCAGGACTGAAGGAGTTGCCATGTATCTGTCCTTGATGTATCTTAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030950.8 |
||
| CDS GCA 72 bp | CTCAATGAAGGGCAGGGCCTCCCCCAGCATCTCCACTaGTTGCTCAGTGGACTCCATATTCATGGCCTCGAG | + |
|
Preference number: 6 (lower is better) Translates to: LNEGQGLPQHLH*LLSGLHIHGLE Trigger: CTCGAGGCCATGAATATGGAGTCCACTGAGCAAGCAGTGGAGATGCTGGGGGAGGCCCTGCCCTTCATTGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||
| CDS CCA 72 bp | GCATCTCCACTGCTTGCTCAGTGGACTCCATATTCATaGCCTCGAGGAAGACCTTGCGTGAGGGTAAGGCAC | + |
|
Preference number: 6 (lower is better) Translates to: ASPLLAQWTPYS*PRGRPCVRVRH Trigger: GTGCCTTACCCTCACGCAAGGTCTTCCTCGAGGCCATGAATATGGAGTCCACTGAGCAAGCAGTGGAGATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||
| CDS CAA 72 bp | TCAGTGGACTCCATATTCATGGCCTCGAGGAAGACCTaGCGTGAGGGTAAGGCACAGAAGGCCACAGTGACA | + |
|
Preference number: 6 (lower is better) Translates to: SVDSIFMASRKT*REGKAQKATVT Trigger: TGTCACTGTGGCCTTCTGTGCCTTACCCTCACGCAAGGTCTTCCTCGAGGCCATGAATATGGAGTCCACTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||
| CDS CAA 72 bp | AGACGCTCCATGATCTGCAGCTTTGCGACCACATCCTaGGAAATGAATGAGAAGACGGCCCCCAGGCTGTTT | + |
|
Preference number: 6 (lower is better) Translates to: RRSMICSFATTS*EMNEKTAPRLF Trigger: AAACAGCCTGGGGGCCGTCTTCTCATTCATTTCCAAGGATGTGGTCGCAAAGCTGCAGATCATGGAGCGTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||
| CDS CAA 90 bp | CTGCTTCTCAGACGCTCCATGATCTGCAGCTTTGCGACCACATCCTaGGAAATGAATGAGAAGACGGCCCCCAGGCTGTTTAGAAACCTG | + |
|
Preference number: 6 (lower is better) Translates to: LLLRRSMICSFATTS*EMNEKTAPRLFRNL Trigger: CAGGTTTCTAAACAGCCTGGGGGCCGTCTTCTCATTCATTTCCAAGGATGTGGTCGCAAAGCTGCAGATCATGGAGCGTCTGAGAAGCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||
| CDS GCA 72 bp | TGGTCCAGCAGCACCTCTCCCTTGTCAGTGAGACACTaGTTGAAGCTGACCAGGACGACTTTAAGGTTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: WSSSTSPLSVRH*LKLTRTTLRLK Trigger: TTTCAACCTTAAAGTCGTCCTGGTCAGCTTCAAGCAGTGTCTCACTGACAAGGGAGAGGTGCTGCTGGACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||
| CDS GCA 72 bp | TCAGACTGTGGGCTGCTTCTCAGACGCTCCATGATCTaGAGCTTTGCGACCACATCCTTGGAAATGAATGAG | + |
|
Preference number: 6 (lower is better) Translates to: SDCGLLLRRSMI*SFATTSLEMNE Trigger: CTCATTCATTTCCAAGGATGTGGTCGCAAAGCTGCAGATCATGGAGCGTCTGAGAAGCAGCCCACAGTCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030950.8 ENSMUST00000151961.2 |
||