RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPSF6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055531

Ensembl transcript IDs: ENSMUST00000069168.13, ENSMUST00000176480.8, ENSMUST00000176670.8, ENSMUST00000176686.8, ENSMUST00000177145.8

Found 256 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTGGAATCTCACTACTAGCTGCAAGGAATGTGACTACACAGCACTaGGCGACGCTGGGACTCAAGACAAGCTCAAGCTGTCACTGCCTC +
Preference number: 1 (lower is better)
Translates to: CGISLLAARNVTTQH*ATLGLKTSSSCHCL
Trigger: GAGGCAGTGACAGCTTGAGCTTGTCTTGAGTCCCAGCGTCGCTCAGTGCTGTGTAGTCACATTCCTTGCAGCTAGTAGTGAGATTCCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR TCA 90 bp TATAGACACTGCAACAACCACTTGGGTAGCAAAACTGAAGTGACATaGGCACTCCAGTGGAAGAGTCTTGCAGTGGCATCTTGTTGTATG +
Preference number: 1 (lower is better)
Translates to: YRHCNNHLGSKTEVT*ALQWKSLAVASCCM
Trigger: CATACAACAAGATGCCACTGCAAGACTCTTCCACTGGAGTGCTCATGTCACTTCAGTTTTGCTACCCAAGTGGTTGTTGCAGTGTCTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR CCA 90 bp AGCAGTATATTGAATTCAAAGTGCCACGTCAGGAGAAATACCTTGTaGAATCTCACTACTAGCTGCAAGGAATGTGACTACACAGCACTG +
Preference number: 1 (lower is better)
Translates to: SSILNSKCHVRRNTL*NLTTSCKECDYTAL
Trigger: CAGTGCTGTGTAGTCACATTCCTTGCAGCTAGTAGTGAGATTCCACAAGGTATTTCTCCTGACGTGGCACTTTGAATTCAATATACTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR TCA 90 bp TTGCTGAACACAAGCCTTTCCCTGAGGTGTAAACATCAAATAACGTaGACAGCTTTACACATCAGCCCCATAAACAGTTTATTACAACAC +
Preference number: 1 (lower is better)
Translates to: LLNTSLSLRCKHQIT*TALHISPINSLLQH
Trigger: GTGTTGTAATAAACTGTTTATGGGGCTGATGTGTAAAGCTGTTCACGTTATTTGATGTTTACACCTCAGGGAAAGGCTTGTGTTCAGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR CCA 90 bp TTTGTAAGGCTGTGCAGGGCTGTAAACTACTTTGCTAATATACCATaGGATGCAAAGGAAGGAGTAATAGACCTTTTCTTAAGGCTAAAG +
Preference number: 1 (lower is better)
Translates to: FVRLCRAVNYFANIP*DAKEGVIDLFLRLK
Trigger: CTTTAGCCTTAAGAAAAGGTCTATTACTCCTTCCTTTGCATCCCATGGTATATTAGCAAAGTAGTTTACAGCCCTGCACAGCCTTACAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR CCA 90 bp TATGGAAGTCTAGTTTTCATGGACATCAACAGAATGCCTACTGAATaGAATCTCACCTTACCTTTTGCACAGAAATCTTATGAAGTCACC +
Preference number: 1 (lower is better)
Translates to: YGSLVFMDINRMPTE*NLTLPFAQKSYEVT
Trigger: GGTGACTTCATAAGATTTCTGTGCAAAAGGTAAGGTGAGATTCCATTCAGTAGGCATTCTGTTGATGTCCATGAAAACTAGACTTCCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR CCA 90 bp AAGATAAATACCATGCTTGTTACTAGCGCAGTTTTAGGCCAACAATaGCCATATAGAAAACTGCTGAACAGTCACCTAAATGCTAAAGAA +
Preference number: 1 (lower is better)
Translates to: KINTMLVTSAVLGQQ*PYRKLLNSHLNAKE
Trigger: TTCTTTAGCATTTAGGTGACTGTTCAGCAGTTTTCTATATGGCCATTGTTGGCCTAAAACTGCGCTAGTAACAAGCATGGTATTTATCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR CCA 90 bp CAAAGAAAATTATTTCCACGTATTTCTAACTTGGAATGTATGGCTTaGCACAGTTTTAAGTTCCTAGATATGAACCCTAAACCCACTTTC +
Preference number: 1 (lower is better)
Translates to: QRKLFPRISNLECMA*HSFKFLDMNPKPTF
Trigger: GAAAGTGGGTTTAGGGTTCATATCTAGGAACTTAAAACTGTGCCAAGCCATACATTCCAAGTTAGAAATACGTGGAAATAATTTTCTTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
3UTR-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTCAAGAAGCAAACTGCTaGACAAGCGTCACTTTTCCC +
Preference number: 2 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFQEANC*TSVTFP
Trigger: GGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTG...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176480.8
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR CAA 90 bp AGTGACATGAGCACTCCAGTGGAAGAGTCTTGCAGTGGCATCTTGTaGTATGAAACAGAATGTACTCAGGCTATTGGCACGTGTCAACAC +
Preference number: 2 (lower is better)
Translates to: SDMSTPVEESCSGIL*YETECTQAIGTCQH
Trigger: GTGTTGACACGTGCCAATAGCCTGAGTACATTCTGTTTCATACAACAAGATGCCACTGCAAGACTCTTCCACTGGAGTGCTCATGTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR GCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTCACAAGAAGCAAACTaGTGGACAAGCGTCACTTTT +
Preference number: 2 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFSQEAN*WTSVTF
Trigger: AAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176480.8
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR-3UTR GCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTTCACAAGAAGCAAACTaGTGGACAAGCGTCACTTTT +
Preference number: 2 (lower is better)
Translates to: HKKQTAGQASLFPREDSFSQEAN*WTSVTF
Trigger: AAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176480.8
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR-3UTR TCA 90 bp ATGTACTCAGGCTATTGGCACGTGTCAACACAGGGAAAGATAAAGTCTTACCCTAGACATGAAATGGCCTaGCATGATCAACAACTATGG +
Preference number: 2 (lower is better)
Translates to: MYSGYWHVSTQGKIKSYPRHEMA*HDQQLW
Trigger: CCATAGTTGTTGATCATGTCAGGCCATTTCATGTCT...AGGGTAAGACTTTATCTTTCCCTGTGTTGACACGTGCCAATAGCCTGAGTACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR CCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACAAGAAGCAAACTGCTaGACAAGCGTCACTTTTCCC +
Preference number: 2 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKQEANC*TSVTFP
Trigger: GGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTG...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR-3UTR CCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCCAAGAAGCAAACTGCTaGACAAGCGTCACTTTTCCC +
Preference number: 2 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFQEANC*TSVTFP
Trigger: GGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTG...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR CAA 90 bp CAGAAATCTGAATCAAGTACAATACTAGAGCTTTCTTTACGCATCTaGCTGTATAGCCATAATTACACTGCCTATGGCACCATCAGCATC +
Preference number: 2 (lower is better)
Translates to: QKSESSTILELSLRI*LYSHNYTAYGTISI
Trigger: GATGCTGATGGTGCCATAGGCAGTGTAATTATGGCTATACAGCAAGATGCGTAAAGAAAGCTCTAGTATTGTACTTGATTCAGATTTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR GCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTCACAAGAAGCAAACTaGTGGACAAGCGTCACTTTT +
Preference number: 2 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQSQEAN*WTSVTF
Trigger: AAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR-3UTR CCA 90 bp ATGTACTCAGGCTATTGGCACGTGTCAACACAGGGAAAGATAAAGTCTTACCCTTGCTTTAAAATGAACTaGCAGTGGTATGGATATTTC +
Preference number: 2 (lower is better)
Translates to: MYSGYWHVSTQGKIKSYPCFKMN*QWYGYF
Trigger: GAAATATCCATACCACTGCCAGTTCATTTTAAAGCA...AGGGTAAGACTTTATCTTTCCCTGTGTTGACACGTGCCAATAGCCTGAGTACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR CCA 90 bp TTCTTTGGCCTTCTGGTATCAGACAACTTATTTACAAAGGGTGATCATTCAATAAGGAGAAATACCTTGTaGAATCTCACTACTAGCTGC +
Preference number: 2 (lower is better)
Translates to: FFGLLVSDNLFTKGDHSIRRNTL*NLTTSC
Trigger: GCAGCTAGTAGTGAGATTCCACAAGGTATTTCTCCT...TATTGAATGATCACCCTTTGTAAATAAGTTGTCTGATACCAGAAGGCCAAAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR TCA 90 bp ACAGTTTATTACAACACTACATCTAGTGTAATCAAATCGGTGCTGTTTACAGACTGTTCAGTTTATCCATaGAGCCTTACAGGTTCAGTT +
Preference number: 2 (lower is better)
Translates to: TVYYNTTSSVIKSVLFTDCSVYP*SLTGSV
Trigger: AACTGAACCTGTAAGGCTTCATGGATAAACTGAACA...GTCTGTAAACAGCACCGATTTGATTACACTAGATGTAGTGTTGTAATAAACTGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR CAA 90 bp CTTATGAAGTCACCACATTCAATAGCTAAAATCTCAAGACTTTCTTaGGCCTTCTGGTATCAGACAACTTATTTACAAAGGGTGATCATT +
Preference number: 2 (lower is better)
Translates to: LMKSPHSIAKISRLS*AFWYQTTYLQRVII
Trigger: AATGATCACCCTTTGTAAATAAGTTGTCTGATACCAGAAGGCCAAAGAAAGTCTTGAGATTTTAGCTATTGAATGTGGTGACTTCATAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR TCA 72 bp TCACTACTAGCTGCAAGGAATGTGACTACACAGCACTaGGCGACGCTGGGACTCAAGACAAGCTCAAGCTGT +
Preference number: 3 (lower is better)
Translates to: SLLAARNVTTQH*ATLGLKTSSSC
Trigger: ACAGCTTGAGCTTGTCTTGAGTCCCAGCGTCGCTCAGTGCTGTGTAGTCACATTCCTTGCAGCTAGTAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR TCA 72 bp TGCAACAACCACTTGGGTAGCAAAACTGAAGTGACATaGGCACTCCAGTGGAAGAGTCTTGCAGTGGCATCT +
Preference number: 3 (lower is better)
Translates to: CNNHLGSKTEVT*ALQWKSLAVAS
Trigger: AGATGCCACTGCAAGACTCTTCCACTGGAGTGCTCATGTCACTTCAGTTTTGCTACCCAAGTGGTTGTTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR GCA 72 bp GTCAGGAGAAATACCTTGTGGAATCTCACTACTAGCTaGAAGGAATGTGACTACACAGCACTGAGCGACGCT +
Preference number: 3 (lower is better)
Translates to: VRRNTLWNLTTS*KECDYTALSDA
Trigger: AGCGTCGCTCAGTGCTGTGTAGTCACATTCCTTGCAGCTAGTAGTGAGATTCCACAAGGTATTTCTCCTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR CAA 90 bp CCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTTTTCAGGAAGACTCTTTTGTCTaGGAAGGTGTTCCTCTTCCT +
Preference number: 3 (lower is better)
Translates to: PRRLFCLGRCSSSFSCFQEDSFV*EGVPLP
Trigger: AGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTC...CTGAAAACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000176480.8
3UTR CCA 72 bp CTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTaGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTT +
Preference number: 3 (lower is better)
Translates to: LTGSVQSQEANC*TSVTFPPRRLF
Trigger: AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR CCA 72 bp TTGAATTCAAAGTGCCACGTCAGGAGAAATACCTTGTaGAATCTCACTACTAGCTGCAAGGAATGTGACTAC +
Preference number: 3 (lower is better)
Translates to: LNSKCHVRRNTL*NLTTSCKECDY
Trigger: GTAGTCACATTCCTTGCAGCTAGTAGTGAGATTCCACAAGGTATTTCTCCTGACGTGGCACTTTGAATTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR CAA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGAGAAGACTCTTTTGTCTaGGAAGGTGTTCCTCTTCCT +
Preference number: 3 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGEDSFV*EGVPLP
Trigger: AGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTC...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR CCA 72 bp ACCATGCTTGTTACTAGCGCAGTTTTAGGCCAACAATaGCCATATAGAAAACTGCTGAACAGTCACCTAAAT +
Preference number: 3 (lower is better)
Translates to: TMLVTSAVLGQQ*PYRKLLNSHLN
Trigger: ATTTAGGTGACTGTTCAGCAGTTTTCTATATGGCCATTGTTGGCCTAAAACTGCGCTAGTAACAAGCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR CAA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGGAAGACTCTTTTGTCTaGGAAGGTGTTCCTCTTCCT +
Preference number: 3 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQEDSFV*EGVPLP
Trigger: AGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTC...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR-3UTR CAA 90 bp TTCTTTGGCCTTCTGGTATCAGACAACTTATTTACAAAGGGTGATCATTCAATACCCGAGAAGACTCTTTaGTCTTGGAAGGTGTTCCTC +
Preference number: 3 (lower is better)
Translates to: FFGLLVSDNLFTKGDHSIPEKTL*SWKVFL
Trigger: GAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGG...TATTGAATGATCACCCTTTGTAAATAAGTTGTCTGATACCAGAAGGCCAAAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR CAA 90 bp ATGTACTCAGGCTATTGGCACGTGTCAACACAGGGAAAGATAAAGTCTTACCCTAAGTCACTTAGAATCTaGCTCATCTTGCTGATGAAA +
Preference number: 3 (lower is better)
Translates to: MYSGYWHVSTQGKIKSYPKSLRI*LILLMK
Trigger: TTTCATCAGCAAGATGAGCAAGATTCTAAGTGACTT...AGGGTAAGACTTTATCTTTCCCTGTGTTGACACGTGCCAATAGCCTGAGTACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR CAA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAGAAGACTCTTTTGTCTaGGAAGGTGTTCCTCTTCCT +
Preference number: 3 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSEDSFV*EGVPLP
Trigger: AGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTC...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR TCA 72 bp ACAAGCCTTTCCCTGAGGTGTAAACATCAAATAACGTaGACAGCTTTACACATCAGCCCCATAAACAGTTTA +
Preference number: 3 (lower is better)
Translates to: TSLSLRCKHQIT*TALHISPINSL
Trigger: TAAACTGTTTATGGGGCTGATGTGTAAAGCTGTTCACGTTATTTGATGTTTACACCTCAGGGAAAGGCTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR TCA 72 bp TTACTCCCATGGTGGAGTTTTAGGGTACTCACTCTCTaGTATGAAAAACTGCTCGTAGTATTTACTATCCAC +
Preference number: 3 (lower is better)
Translates to: LLPWWSFRVLTL*YEKLLVVFTIH
Trigger: GTGGATAGTAAATACTACGAGCAGTTTTTCATATCAGAGAGTGAGTACCCTAAAACTCCACCATGGGAGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR GCA 72 bp TTTCCTTTCCCTCAAAGCAGTATATTGAATTCAAAGTaGCACGTCAGGAGAAATACCTTGTGGAATCTCACT +
Preference number: 3 (lower is better)
Translates to: FPFPQSSILNSK*HVRRNTLWNLT
Trigger: AGTGAGATTCCACAAGGTATTTCTCCTGACGTGGCACTTTGAATTCAATATACTGCTTTGAGGGAAAGGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR GCA 72 bp ATATATGGAGCAAAGGTGTTTACAGAATTGATAACCTaGCACATTCAAAAGATTCACAGTGCTCTGTCCCCA +
Preference number: 3 (lower is better)
Translates to: IYGAKVFTELIT*HIQKIHSALSP
Trigger: TGGGGACAGAGCACTGTGAATCTTTTGAATGTGGCAGGTTATCAATTCTGTAAACACCTTTGCTCCATATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
3UTR CCA 72 bp CTGTGCAGGGCTGTAAACTACTTTGCTAATATACCATaGGATGCAAAGGAAGGAGTAATAGACCTTTTCTTA +
Preference number: 3 (lower is better)
Translates to: LCRAVNYFANIP*DAKEGVIDLFL
Trigger: TAAGAAAAGGTCTATTACTCCTTCCTTTGCATCCCATGGTATATTAGCAAAGTAGTTTACAGCCCTGCACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR TCA 72 bp AAGTCTAGTTTTCATGGACATCAACAGAATGCCTACTaGATGGAATCTCACCTTACCTTTTGCACAGAAATC +
Preference number: 3 (lower is better)
Translates to: KSSFHGHQQNAY*MESHLTFCTEI
Trigger: GATTTCTGTGCAAAAGGTAAGGTGAGATTCCATTCAGTAGGCATTCTGTTGATGTCCATGAAAACTAGACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR-3UTR CAA 90 bp TTCTTTGGCCTTCTGGTATCAGACAACTTATTTACAAAGGGTGATCATTCAATACACATCAAAGAATCATaGCCCATTGAATACCACCTG +
Preference number: 3 (lower is better)
Translates to: FFGLLVSDNLFTKGDHSIHIKES*PIEYHL
Trigger: CAGGTGGTATTCAATGGGCAATGATTCTTTGATGTG...TATTGAATGATCACCCTTTGTAAATAAGTTGTCTGATACCAGAAGGCCAAAGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR TCA 72 bp CTACAAATCTATTTCCTTTCCCTCAAAGCAGTATATTaGATTCAAAGTGCCACGTCAGGAGAAATACCTTGT +
Preference number: 3 (lower is better)
Translates to: LQIYFLSLKAVY*IQSATSGEIPC
Trigger: ACAAGGTATTTCTCCTGACGTGGCACTTTGAATTCAATATACTGCTTTGAGGGAAAGGAAATAGATTTGTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR CCA 72 bp CTAGTTTTCATGGACATCAACAGAATGCCTACTGAATaGAATCTCACCTTACCTTTTGCACAGAAATCTTAT +
Preference number: 3 (lower is better)
Translates to: LVFMDINRMPTE*NLTLPFAQKSY
Trigger: ATAAGATTTCTGTGCAAAAGGTAAGGTGAGATTCCATTCAGTAGGCATTCTGTTGATGTCCATGAAAACTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR TCA 72 bp GTCGTGTGTTATAGTTGCAGTCCTCAAAATACATTATaGTTCACATCAAAGAATCATTGCCCATTGAATACC +
Preference number: 3 (lower is better)
Translates to: VVCYSCSPQNTL*FTSKNHCPLNT
Trigger: GGTATTCAATGGGCAATGATTCTTTGATGTGAATCATAATGTATTTTGAGGACTGCAACTATAACACACGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR CCA 72 bp TTATTTCCACGTATTTCTAACTTGGAATGTATGGCTTaGCACAGTTTTAAGTTCCTAGATATGAACCCTAAA +
Preference number: 3 (lower is better)
Translates to: LFPRISNLECMA*HSFKFLDMNPK
Trigger: TTTAGGGTTCATATCTAGGAACTTAAAACTGTGCCAAGCCATACATTCCAAGTTAGAAATACGTGGAAATAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
3UTR CCA 72 bp CCACCCTCTTACATCTACTTCACAATAAATACCGTTTaGTATAGCAAAAGTACAGTAATCCAGAAAAACATA +
Preference number: 3 (lower is better)
Translates to: PPSYIYFTINTV*YSKSTVIQKNI
Trigger: TATGTTTTTCTGGATTACTGTACTTTTGCTATACCAAACGGTATTTATTGTGAAGTAGATGTAAGAGGGTGG
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTAGGAGGTGGAGGACCTaGTGGACCAGGTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFRRWRT*WTRWAR
Trigger: CCTGGCCCACCTGGTCCACCAGGTCCTCCACCTCCT...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTCGGGGCACCTGGAGGTaGTCCCGGAAGATGTGGAGG +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFRGTWR*SRKMWR
Trigger: CCTCCACATCTTCCGGGACCACCTCCAGGTGCCCCG...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTCGGGGCACCTGGAGGTaGTCCCGGAAGATGTGGAGG +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFRGTWR*SRKMWR
Trigger: CCTCCACATCTTCCGGGACCACCTCCAGGTGCCCCG...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTGGTGGCGGGGCACCTaGAGGTGGTCCCGGAAGATG +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFWWRGT*RWSRKM
Trigger: CATCTTCCGGGACCACCTCCAGGTGCCCCGCCACCA...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTCCCTCCTGGTCCTGCTaGCCCAGGAAATCTGTCCCC +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFPSWSC*PRKSVP
Trigger: GGGGACAGATTTCCTGGGCCAGCAGGACCAGGAGGG...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp AGAAAAGTACAAACCTCTCAAGCTGCTCATTACCTCAACCTATGGCACAGACCTGCCTGGAGGTGGAGGTaGTCCCTGCTGTGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: RKVQTSQAAHYLNLWHRPAWRWR*SLLWRR
Trigger: CCGCCTCCACAGCAGGGACCACCTCCACCTCCAGGC...AGGTCTGTGCCATAGGTTGAGGTAATGAGCAGCTTGAGAGGTTTGTACTTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR GCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTGGACCCAGCGGAGGCTaGCCAAAAGGTTGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFGPSGG*PKGCPG
Trigger: TCCTGGACAACCTTTTGGGCAGCCTCCGCTGGGTCC...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTAACCTGACCAGGAGGTaGAGGACCTGGTGGACCAGG +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFNLTRR*RTWWTR
Trigger: CCTGGTCCACCAGGTCCTCCACCTCCTGGTCAGGTT...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAACCTGACCAGGAGGTaGAGGACCTGGTGGACCAGG +
Preference number: 4 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCNLTRR*RTWWTR
Trigger: CCTGGTCCACCAGGTCCTCCACCTCCTGGTCAGGTT...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTATTCACATGTGGAGCTaGTGGCGGGGCACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFIHMWS*WRGTWR
Trigger: CCTCCAGGTGCCCCGCCACCAGCTCCACATGTGAAT...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTCGTCCTCTACCACCTTaGGGAAACGCTGCGCGTGAA +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFRPLPP*GNAARE
Trigger: TTCACGCGCAGCGTTTCCTCAAGGTGGTAGAGGACG...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTCGTCCTCTACCACCTTaGGGAAACGCTGCGCGTGAA +
Preference number: 4 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCRPLPP*GNAARE
Trigger: TTCACGCGCAGCGTTTCCTCAAGGTGGTAGAGGACG...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAATGCCTGGAGGTGGAGGTaGTCCCTGCTGTGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: DSFVLEGVPLPSAVMCQNAWRWR*SLLWRR
Trigger: CCGCCTCCACAGCAGGGACCACCTCCACCTCCAGGC...ATTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp ATGTACTCAGGCTATTGGCACGTGTCAACACAGGGAAAGATAAAGTCTTACCCTTGGCCCTCCTGGTCCTaGTGGCCCAGGAAATCTGTC +
Preference number: 4 (lower is better)
Translates to: MYSGYWHVSTQGKIKSYPWPSWS*WPRKSV
Trigger: GACAGATTTCCTGGGCCAGCAGGACCAGGAGGGCCA...AGGGTAAGACTTTATCTTTCCCTGTGTTGACACGTGCCAATAGCCTGAGTACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR CCA 90 bp AGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAAAGGAGGTGGAGGACCTaGTGGACCAGGTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: RLFCLGRCSSSFSCNVSKRRWRT*WTRWAR
Trigger: CCTGGCCCACCTGGTCCACCAGGTCCTCCACCTCCT...TTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGAAGGTGGTCCCTGCTGTaGAGGCGGTGGACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGRWSLL*RRWTWR
Trigger: CCTCCAGGTCCACCGCCTCCACAGCAGGGACCACCT...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTTGGTCCCGGAAGATGTaGAGGAGGAGCAAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFWSRKM*RRSKCE
Trigger: CTCACACTTGCTCCTCCTCCACATCTTCCGGGACCA...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTGTCACCCCTATCATATaGGGGAGGTCGGCCATATGG +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFVTPII*GRSAIW
Trigger: CCATATGGCCGACCTCCCCCATATGATAGGGGTGAC...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176480.8
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTGTCACCCCTATCATATaGGGGAGGTCGGCCATATGG +
Preference number: 4 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCVTPII*GRSAIW
Trigger: CCATATGGCCGACCTCCCCCATATGATAGGGGTGAC...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAAAGGAAACGCTGCGCGTaGACCGCCTCCTGGAGGACC +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKRKRCA*TASWRT
Trigger: GGTCCTCCAGGAGGCGGTTCACGCGCAGCGTTTCCT...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGGGTGGAGGTGGTCCCTaGTGTGGAGGCGGTGGACCT +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQGGGGP*CGGGGP
Trigger: AGGTCCACCGCCTCCACAGCAGGGACCACCTCCACC...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGACCCTCCTGGTCCTGCTaGCCCAGGAAATCTGTCCCC +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGPSWSC*PRKSVP
Trigger: GGGGACAGATTTCCTGGGCCAGCAGGACCAGGAGGG...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGAGGAGGTGGAGGACCTaGTGGACCAGGTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQRRWRT*WTRWAR
Trigger: CCTGGCCCACCTGGTCCACCAGGTCCTCCACCTCCT...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAGCCTGGAGGTGGAGGTaGTCCCTGCTGTGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSAWRWR*SLLWRR
Trigger: CCGCCTCCACAGCAGGGACCACCTCCACCTCCAGGC...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTCCCAGACATCTGTCCTaGCTGTGTAGTTTTCCTGGA +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFPRHLS*LCSFPG
Trigger: TCCAGGAAAACTACACAGTCAGGACAGATGTCTGGG...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTTTGGACTCGATTCCATaGAGGCAATCCTGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFLDSIP*RQSCRE
Trigger: CTCTCTGCAGGATTGCCTTCATGGAATCGAGTCCAA...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176480.8
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTGTACACAACGTTTGGTaGGGCTCCTTTACCCACATC +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFVHNVW*GSFTHI
Trigger: GATGTGGGTAAAGGAGCCGCACCAAACGTTGTGTAC...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGATGGCCCTCCTGGTCCTaGTGGCCCAGGAAATCTGTC +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGWPSWS*WPRKSV
Trigger: GACAGATTTCCTGGGCCAGCAGGACCAGGAGGGCCA...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTGTAGTCGCGATCTTCTaGGGCATCGCCATTATTTGC +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFVVAIF*GIAIIC
Trigger: GCAAATAATGGCGATGCCCCAGAAGATCGCGACTAC...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGATGGAAAAGGTGGAGGTaGCCCTCCTGGTCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGWKRWR*PSWSCW
Trigger: CCAGCAGGACCAGGAGGGCCACCTCCACCTTTTCCA...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp AGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAATGGAAAAGGTGGAGGTaGCCCTCCTGGTCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: RLFCLGRCSSSFSCNVSKWKRWR*PSWSCW
Trigger: CCAGCAGGACCAGGAGGGCCACCTCCACCTTTTCCA...TTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAGGTGGTCCCTGCTGTaGAGGCGGTGGACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFRWSLL*RRWTWR
Trigger: CCTCCAGGTCCACCGCCTCCACAGCAGGGACCACCT...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTGCCTGGAGGTGGAGGTaGTCCCTGCTGTGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSAWRWR*SLLWRR
Trigger: CCGCCTCCACAGCAGGGACCACCTCCACCTCCAGGC...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCACGGGGCACCTGGAGGTaGTCCCGGAAGATGTGGAGG +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSRGTWR*SRKMWR
Trigger: CCTCCACATCTTCCGGGACCACCTCCAGGTGCCCCG...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCTGGTGGCGGGGCACCTaGAGGTGGTCCCGGAAGATG +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFWWRGT*RWSRKM
Trigger: CATCTTCCGGGACCACCTCCAGGTGCCCCGCCACCA...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGAGGGAGGTCGGCCATATaGGTCTGTTGGTGGTGGACC +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGGRSAI*VCWWWT
Trigger: GGTCCACCACCAACAGACCCATATGGCCGACCTCCC...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAATGGGAGGTCGGCCATATaGGTCTGTTGGTGGTGGACC +
Preference number: 4 (lower is better)
Translates to: DSFVLEGVPLPSAVMCQNGRSAI*VCWWWT
Trigger: GGTCCACCACCAACAGACCCATATGGCCGACCTCCC...ATTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTCAGACCCATAGGACTTaGACTCGATTCCATGAAGGC +
Preference number: 4 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCQTHRT*TRFHEG
Trigger: GCCTTCATGGAATCGAGTCCAAGTCCTATGGGTCTG...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTCAGACCCATAGGACTTaGACTCGATTCCATGAAGGC +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFQTHRT*TRFHEG
Trigger: GCCTTCATGGAATCGAGTCCAAGTCCTATGGGTCTG...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176480.8
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR CAA 72 bp CTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTaGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTTT +
Preference number: 4 (lower is better)
Translates to: LDKRHFSPEKTL*SWKVFLFLQLF
Trigger: AAACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176480.8
CDS-3UTR TCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTTGGACCTCGACTATCTaGTGTTGGCATGCCACTATT +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFWTSTI*CWHATI
Trigger: AATAGTGGCATGCCAACATCAGATAGTCGAGGTCCA...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp CCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTTTTCAGATGGTCCCGTTCTCTTaGTCGTTCACGTCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: PRRLFCLGRCSSSFSCFQMVPFS*SFTSSG
Trigger: TCCAGAAGACGTGAACGATCAAGAGAACGGGACCAT...CTGAAAACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176480.8
CDS-3UTR GCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAAGGACCCAGCGGAGGCTaGCCAAAAGGTTGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKGPSGG*PKGCPG
Trigger: TCCTGGACAACCTTTTGGGCAGCCTCCGCTGGGTCC...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp ACAGTTTATTACAACACTACATCTAGTGTAATCAAATCGGTGCTGTTTACAGACGGTGGAGGTGGTCCCTaGTGTGGAGGCGGTGGACCT +
Preference number: 4 (lower is better)
Translates to: TVYYNTTSSVIKSVLFTDGGGGP*CGGGGP
Trigger: AGGTCCACCGCCTCCACAGCAGGGACCACCTCCACC...GTCTGTAAACAGCACCGATTTGATTACACTAGATGTAGTGTTGTAATAAACTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTGGTGGAGGTGGTCCCTaGTGTGGAGGCGGTGGACCT +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSGGGGP*CGGGGP
Trigger: AGGTCCACCGCCTCCACAGCAGGGACCACCTCCACC...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCCCCTCCTGGTCCTGCTaGCCCAGGAAATCTGTCCCC +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFPSWSC*PRKSVP
Trigger: GGGGACAGATTTCCTGGGCCAGCAGGACCAGGAGGG...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTAGGAGGTGGAGGACCTaGTGGACCAGGTGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSRRWRT*WTRWAR
Trigger: CCTGGCCCACCTGGTCCACCAGGTCCTCCACCTCCT...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTAGGTGGTCCCTGCTGTaGAGGCGGTGGACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSRWSLL*RRWTWR
Trigger: CCTCCAGGTCCACCGCCTCCACAGCAGGGACCACCT...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTCGGGGCACCTGGAGGTaGTCCCGGAAGATGTGGAGG +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCRGTWR*SRKMWR
Trigger: CCTCCACATCTTCCGGGACCACCTCCAGGTGCCCCG...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATTGGTGGCGGGGCACCTaGAGGTGGTCCCGGAAGATG +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYWWRGT*RWSRKM
Trigger: CATCTTCCGGGACCACCTCCAGGTGCCCCGCCACCA...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAAATTCACATGTGGAGCTaGTGGCGGGGCACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKIHMWS*WRGTWR
Trigger: CCTCCAGGTGCCCCGCCACCAGCTCCACATGTGAAT...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGATTCACATGTGGAGCTaGTGGCGGGGCACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQIHMWS*WRGTWR
Trigger: CCTCCAGGTGCCCCGCCACCAGCTCCACATGTGAAT...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTTCCCGTGATCTACTATaGTCCCGTTCTCTTGATCGT +
Preference number: 4 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCSRDLL*SRSLDR
Trigger: ACGATCAAGAGAACGGGACCATAGTAGATCACGGGA...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTCTACTCCGAGATTTATaGCGACGACTCTTTTCCCGT +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFLLRDL*RRLFSR
Trigger: ACGGGAAAAGAGTCGTCGCCATAAATCTCGGAGTAG...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176480.8
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTCTTGATCAAATTTCCTaGAAAAGGTGGAGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFLDQIS*KRWRWP
Trigger: GGGCCACCTCCACCTTTTCCAGGAAATTTGATCAAG...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000176670.8
CDS-3UTR TCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACGTCCTCTACCACCTTaGGGAAACGCTGCGCGTGAA +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKRPLPP*GNAARE
Trigger: TTCACGCGCAGCGTTTCCTCAAGGTGGTAGAGGACG...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTGGCATCGCCATTATTTaGAGATGGAGAGATGACATC +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFGIAII*RWRDDI
Trigger: GATGTCATCTCTCCATCTGCAAATAATGGCGATGCC...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCTGGCCCTCCTGGTCCTaGTGGCCCAGGAAATCTGTC +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFWPSWS*WPRKSV
Trigger: GACAGATTTCCTGGGCCAGCAGGACCAGGAGGGCCA...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATCCCTCCTGGTCCTGCTaGCCCAGGAAATCTGTCCCC +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYPSWSC*PRKSVP
Trigger: GGGGACAGATTTCCTGGGCCAGCAGGACCAGGAGGG...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCATGGAAAAGGTGGAGGTaGCCCTCCTGGTCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSWKRWR*PSWSCW
Trigger: CCAGCAGGACCAGGAGGGCCACCTCCACCTTTTCCA...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp AGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAAAGGAAAAAGAACTGGTaGTGGAGGGCGGTCTCCTCG +
Preference number: 4 (lower is better)
Translates to: RLFCLGRCSSSFSCNVSKRKKNW*WRAVSS
Trigger: CGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCT...TTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGATCCAGGAAAAAGAACTaGTGGTGGAGGGCGGTCTCC +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGSRKKN*WWRAVS
Trigger: GGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGA...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGATGGTCCCGGAAGATGTaGAGGAGGAGCAAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGWSRKM*RRSKCE
Trigger: CTCACACTTGCTCCTCCTCCACATCTTCCGGGACCA...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp AGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTTTTCAGATGCTTGCCATATGGGTCTGTTaGTGGTGGACCTCGACTATC +
Preference number: 4 (lower is better)
Translates to: RLFCLGRCSSSFSCFQMLAIWVC*WWTSTI
Trigger: GATAGTCGAGGTCCACCACCAACAGACCCATATGGC...AAGCATCTGAAAACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176480.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAGGGAGGTCGGCCATATaGGTCTGTTGGTGGTGGACC +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSGRSAI*VCWWWT
Trigger: GGTCCACCACCAACAGACCCATATGGCCGACCTCCC...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGAGTCACCCCTATCATATaGGGGAGGTCGGCCATATGG +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGVTPII*GRSAIW
Trigger: CCATATGGCCGACCTCCCCCATATGATAGGGGTGAC...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp AAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTTTTCAGATGCTACGACTCTTTTCCCGTaGTCTACTATGGTCCCGTTC +
Preference number: 4 (lower is better)
Translates to: KTLLSWKVFLFLQLFSDATTLFP*STMVPF
Trigger: GAACGGGACCATAGTAGATCACGGGAAAAGAGTCGT...AGCATCTGAAAACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000176480.8
CDS-3UTR GCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTATGTCCACCATATTCTaGTTCCTGGTTGAACTCTTC +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFMSTIF*FLVELF
Trigger: GAAGAGTTCAACCAGGAAGCAGAATATGGTGGACAT...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTTGGCCCTCCTGGTCCTaGTGGCCCAGGAAATCTGTC +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCWPSWS*WPRKSV
Trigger: GACAGATTTCCTGGGCCAGCAGGACCAGGAGGGCCA...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR GCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTGGACCCAGCGGAGGCTaGCCAAAAGGTTGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSGPSGG*PKGCPG
Trigger: TCCTGGACAACCTTTTGGGCAGCCTCCGCTGGGTCC...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTGAACTGCTTATTGCATaGAGTTACAACAGGACTCTG +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFELLIA*SYNRTL
Trigger: CAGAGTCCTGTTGTAACTCCATGCAATAAGCAGTTC...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTGAACTGCTTATTGCATaGAGTTACAACAGGACTCTG +
Preference number: 4 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCELLIA*SYNRTL
Trigger: CAGAGTCCTGTTGTAACTCCATGCAATAAGCAGTTC...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTTGGAAAAGGTGGAGGTaGCCCTCCTGGTCCTGCTGG +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCWKRWR*PSWSCW
Trigger: CCAGCAGGACCAGGAGGGCCACCTCCACCTTTTCCA...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTAACCTGACCAGGAGGTaGAGGACCTGGTGGACCAGG +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSNLTRR*RTWWTR
Trigger: CCTGGTCCACCAGGTCCTCCACCTCCTGGTCAGGTT...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGAAAAAAGAACTGGTGGTaGAGGGCGGTCTCCTCGGTT +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGKKNWW*RAVSSV
Trigger: AACCGAGGAGACCGCCCTCCACCACCAGTTCTTTTT...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp AGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAAAAAAAGAACTGGTGGTaGAGGGCGGTCTCCTCGGTT +
Preference number: 4 (lower is better)
Translates to: RLFCLGRCSSSFSCNVSKKKNWW*RAVSSV
Trigger: AACCGAGGAGACCGCCCTCCACCACCAGTTCTTTTT...TTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCT
46% GC, longest homopolymer 9 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAAAGGAAAAAGAACTGGTaGTGGAGGGCGGTCTCCTCG +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKRKKNW*WRAVSS
Trigger: CGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCT...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTCCAGGAAAAAGAACTaGTGGTGGAGGGCGGTCTCC +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQSRKKN*WWRAVS
Trigger: GGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGA...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAATGGTCCCGGAAGATGTaGAGGAGGAGCAAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKWSRKM*RRSKCE
Trigger: CTCACACTTGCTCCTCCTCCACATCTTCCGGGACCA...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTATTCACATGTGGAGCTaGTGGCGGGGCACCTGGAGG +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCIHMWS*WRGTWR
Trigger: CCTCCAGGTGCCCCGCCACCAGCTCCACATGTGAAT...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATGGGAGGTCGGCCATATaGGTCTGTTGGTGGTGGACC +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYGRSAI*VCWWWT
Trigger: GGTCCACCACCAACAGACCCATATGGCCGACCTCCC...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp AGAAAAGTACAAACCTCTCAAGCTGCTCATTACCTCAACCTATGGCACAGACCTCTACTCCGAGATTTATaGCGACGACTCTTTTCCCGT +
Preference number: 4 (lower is better)
Translates to: RKVQTSQAAHYLNLWHRPLLRDL*RRLFSR
Trigger: ACGGGAAAAGAGTCGTCGCCATAAATCTCGGAGTAG...AGGTCTGTGCCATAGGTTGAGGTAATGAGCAGCTTGAGAGGTTTGTACTTTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR CAA 72 bp ATGAGCACTCCAGTGGAAGAGTCTTGCAGTGGCATCTaGTTGTATGAAACAGAATGTACTCAGGCTATTGGC +
Preference number: 4 (lower is better)
Translates to: MSTPVEESCSGI*LYETECTQAIG
Trigger: GCCAATAGCCTGAGTACATTCTGTTTCATACAACAAGATGCCACTGCAAGACTCTTCCACTGGAGTGCTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR TCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATCGTCCTCTACCACCTTaGGGAAACGCTGCGCGTGAA +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYRPLPP*GNAARE
Trigger: TTCACGCGCAGCGTTTCCTCAAGGTGGTAGAGGACG...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR TCA 90 bp GACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAATACGACTCTTTTCCCGTaGTCTACTATGGTCCCGTTC +
Preference number: 4 (lower is better)
Translates to: DSFVLEGVPLPSAVMCQNTTLFP*STMVPF
Trigger: GAACGGGACCATAGTAGATCACGGGAAAAGAGTCGT...ATTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGAAGTGTACACAACGTTTaGTGCGGCTCCTTTACCCAC +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGSVHNV*CGSFTH
Trigger: GTGGGTAAAGGAGCCGCACCAAACGTTGTGTACACT...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAAGGAAAAAGAACTGGTaGTGGAGGGCGGTCTCCTCG +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSRKKNW*WRAVSS
Trigger: CGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCT...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGGCCATATGGGTCTGTTaGTGGTGGACCTCGACTATC +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQAIWVC*WWTSTI
Trigger: GATAGTCGAGGTCCACCACCAACAGACCCATATGGC...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp AAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTTTTCAGATGCTCTACTCCGAGATTTATaGCGACGACTCTTTTCCCGT +
Preference number: 4 (lower is better)
Translates to: KTLLSWKVFLFLQLFSDALLRDL*RRLFSR
Trigger: ACGGGAAAAGAGTCGTCGCCATAAATCTCGGAGTAG...AGCATCTGAAAACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000176480.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATTTCCTGGAAAAGGTaGAGGTGGCCCTCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSISWKR*RWPSWS
Trigger: GGACCAGGAGGGCCACCTCCACCTTTTCCAGGAAAT...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176670.8
CDS-3UTR TCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGCCCAGACATCTGTCCTaGCTGTGTAGTTTTCCTGGA +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQPRHLS*LCSFPG
Trigger: TCCAGGAAAACTACACAGTCAGGACAGATGTCTGGG...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAATTGGACTCGATTCCATaGAGGCAATCCTGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKLDSIP*RQSCRE
Trigger: CTCTCTGCAGGATTGCCTTCATGGAATCGAGTCCAA...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCATGGTCCCGTTCTCTTaGTCGTTCACGTCTGGATCC +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFMVPFS*SFTSGS
Trigger: GGATCCAGACGTGAACGATCAAGAGAACGGGACCAT...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
CDS-3UTR GCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGGTACACAACGTTTGGTaGGGCTCCTTTACCCACATC +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQVHNVW*GSFTHI
Trigger: GATGTGGGTAAAGGAGCCGCACCAAACGTTGTGTAC...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp AGAAAAGTACAAACCTCTCAAGCTGCTCATTACCTCAACCTATGGCACAGACCTTCAGGAACTGCTTATTaGATGGAGTTACAACAGGAC +
Preference number: 4 (lower is better)
Translates to: RKVQTSQAAHYLNLWHRPSGTAY*MELQQD
Trigger: GTCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGA...AGGTCTGTGCCATAGGTTGAGGTAATGAGCAGCTTGAGAGGTTTGTACTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR GCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTTTTGCAACGATCATCTaGAGAGACTTTGGATTGTTT +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFFATII*RDFGLF
Trigger: AAACAATCCAAAGTCTCTGCAGATGATCGTTGCAAA...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
43% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176480.8
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGAATGCTGTGCCCCATATaGCATGGAATCCTAGTTTCC +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGMLCPI*HGILVS
Trigger: GGAAACTAGGATTCCATGGCATATGGGGCACAGCAT...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176670.8
CDS-3UTR CCA 90 bp AGAAAAGTACAAACCTCTCAAGCTGCTCATTACCTCAACCTATGGCACAGACCTGAACTGCTTATTGCATaGAGTTACAACAGGACTCTG +
Preference number: 4 (lower is better)
Translates to: RKVQTSQAAHYLNLWHRPELLIA*SYNRTL
Trigger: CAGAGTCCTGTTGTAACTCCATGCAATAAGCAGTTC...AGGTCTGTGCCATAGGTTGAGGTAATGAGCAGCTTGAGAGGTTTGTACTTTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR CCA 90 bp TTCTTTGGCCTTCTGGTATCAGACAACTTATTTACAAAGGGTGATCATTCAATATGGAGTTTGTCCAGCTaGAAAAGGTGGAGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: FFGLLVSDNLFTKGDHSIWSLSS*KRWRWP
Trigger: GGGCCACCTCCACCTTTTCCAGCTGGACAAACTCCA...TATTGAATGATCACCCTTTGTAAATAAGTTGTCTGATACCAGAAGGCCAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR CCA 90 bp ACAGTTTATTACAACACTACATCTAGTGTAATCAAATCGGTGCTGTTTACAGACTGGAGTTTGTCCAGCTaGAAAAGGTGGAGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: TVYYNTTSSVIKSVLFTDWSLSS*KRWRWP
Trigger: GGGCCACCTCCACCTTTTCCAGCTGGACAAACTCCA...GTCTGTAAACAGCACCGATTTGATTACACTAGATGTAGTGTTGTAATAAACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069168.13
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTTGGAGTTTGTCCAGCTaGAAAAGGTGGAGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSWSLSS*KRWRWP
Trigger: GGGCCACCTCCACCTTTTCCAGCTGGACAAACTCCA...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAAAAAGAACTGGTGGTaGAGGGCGGTCTCCTCGGTT +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFKKNWW*RAVSSV
Trigger: AACCGAGGAGACCGCCCTCCACCACCAGTTCTTTTT...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTAGGAAAAAGAACTGGTaGTGGAGGGCGGTCTCCTCG +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSRKKNW*WRAVSS
Trigger: CGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCT...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp ACAGTTTATTACAACACTACATCTAGTGTAATCAAATCGGTGCTGTTTACAGACTCCAGGAAAAAGAACTaGTGGTGGAGGGCGGTCTCC +
Preference number: 4 (lower is better)
Translates to: TVYYNTTSSVIKSVLFTDSRKKN*WWRAVS
Trigger: GGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGA...GTCTGTAAACAGCACCGATTTGATTACACTAGATGTAGTGTTGTAATAAACTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATTCCAGGAAAAAGAACTaGTGGTGGAGGGCGGTCTCC +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYSRKKN*WWRAVS
Trigger: GGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGA...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTTGGTCCCGGAAGATGTaGAGGAGGAGCAAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSWSRKM*RRSKCE
Trigger: CTCACACTTGCTCCTCCTCCACATCTTCCGGGACCA...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCGCCATATGGGTCTGTTaGTGGTGGACCTCGACTATC +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFAIWVC*WWTSTI
Trigger: GATAGTCGAGGTCCACCACCAACAGACCCATATGGC...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAGCCATATGGGTCTGTTaGTGGTGGACCTCGACTATC +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSAIWVC*WWTSTI
Trigger: GATAGTCGAGGTCCACCACCAACAGACCCATATGGC...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp ACAGTTTATTACAACACTACATCTAGTGTAATCAAATCGGTGCTGTTTACAGACGTCACCCCTATCATATaGGGGAGGTCGGCCATATGG +
Preference number: 4 (lower is better)
Translates to: TVYYNTTSSVIKSVLFTDVTPII*GRSAIW
Trigger: CCATATGGCCGACCTCCCCCATATGATAGGGGTGAC...GTCTGTAAACAGCACCGATTTGATTACACTAGATGTAGTGTTGTAATAAACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTGTCACCCCTATCATATaGGGGAGGTCGGCCATATGG +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSVTPII*GRSAIW
Trigger: CCATATGGCCGACCTCCCCCATATGATAGGGGTGAC...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGCAGACCCATAGGACTTaGACTCGATTCCATGAAGGC +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQQTHRT*TRFHEG
Trigger: GCCTTCATGGAATCGAGTCCAAGTCCTATGGGTCTG...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACAGACCCATAGGACTTaGACTCGATTCCATGAAGGC +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKQTHRT*TRFHEG
Trigger: GCCTTCATGGAATCGAGTCCAAGTCCTATGGGTCTG...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGACTACTCCGAGATTTATaGCGACGACTCTTTTCCCGT +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGLLRDL*RRLFSR
Trigger: ACGGGAAAAGAGTCGTCGCCATAAATCTCGGAGTAG...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCCCCAGACATCTGTCCTaGCTGTGTAGTTTTCCTGGA +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFPRHLS*LCSFPG
Trigger: TCCAGGAAAACTACACAGTCAGGACAGATGTCTGGG...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAATGGACCTCGACTATCTaGTGTTGGCATGCCACTATT +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKWTSTI*CWHATI
Trigger: AATAGTGGCATGCCAACATCAGATAGTCGAGGTCCA...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCTTGGACTCGATTCCATaGAGGCAATCCTGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFLDSIP*RQSCRE
Trigger: CTCTCTGCAGGATTGCCTTCATGGAATCGAGTCCAA...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp ACAGTTTATTACAACACTACATCTAGTGTAATCAAATCGGTGCTGTTTACAGACATGGTCCCGTTCTCTTaGTCGTTCACGTCTGGATCC +
Preference number: 4 (lower is better)
Translates to: TVYYNTTSSVIKSVLFTDMVPFS*SFTSGS
Trigger: GGATCCAGACGTGAACGATCAAGAGAACGGGACCAT...GTCTGTAAACAGCACCGATTTGATTACACTAGATGTAGTGTTGTAATAAACTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
CDS-3UTR TCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATATGGTCCCGTTCTCTTaGTCGTTCACGTCTGGATCC +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYMVPFS*SFTSGS
Trigger: GGATCCAGACGTGAACGATCAAGAGAACGGGACCAT...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR TCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCACGACTCTTTTCCCGTaGTCTACTATGGTCCCGTTC +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFTTLFP*STMVPF
Trigger: GAACGGGACCATAGTAGATCACGGGAAAAGAGTCGT...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCGTACACAACGTTTGGTaGGGCTCCTTTACCCACATC +
Preference number: 4 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFVHNVW*GSFTHI
Trigger: GATGTGGGTAAAGGAGCCGCACCAAACGTTGTGTAC...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGAATTTCCTCTATGCTGTaGCCCATATGCCATGGAATC +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGISSML*PICHGI
Trigger: GATTCCATGGCATATGGGGCACAGCATAGAGGAAAT...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176670.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAGTAGTCGCGATCTTCTaGGGCATCGCCATTATTTGC +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSVVAIF*GIAIIC
Trigger: GCAAATAATGGCGATGCCCCAGAAGATCGCGACTAC...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTGATCCATTAACTTTTTaGAAGATGCTTCAGATCCAA +
Preference number: 4 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFDPLTF*KMLQIQ
Trigger: TTGGATCTGAAGCATCTTCCAAAAAGTTAATGGATC...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTGATCCATTAACTTTTTaGAAGATGCTTCAGATCCAA +
Preference number: 4 (lower is better)
Translates to: HKKQTAGQASLFPREDSFDPLTF*KMLQIQ
Trigger: TTGGATCTGAAGCATCTTCCAAAAAGTTAATGGATC...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTAAAAAGAACTGGTGGTaGAGGGCGGTCTCCTCGGTT +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSKKNWW*RAVSSV
Trigger: AACCGAGGAGACCGCCCTCCACCACCAGTTCTTTTT...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATGCCATATGGGTCTGTTaGTGGTGGACCTCGACTATC +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYAIWVC*WWTSTI
Trigger: GATAGTCGAGGTCCACCACCAACAGACCCATATGGC...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAATCCCGTGATCTACTATaGTCCCGTTCTCTTGATCGT +
Preference number: 4 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKSRDLL*SRSLDR
Trigger: ACGATCAAGAGAACGGGACCATAGTAGATCACGGGA...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
3UTR CAA 72 bp ATATTGAATTCAAAGTGCCACGTCAGGAGAAATACCTaGTGGAATCTCACTACTAGCTGCAAGGAATGTGAC +
Preference number: 4 (lower is better)
Translates to: ILNSKCHVRRNT*WNLTTSCKECD
Trigger: GTCACATTCCTTGCAGCTAGTAGTGAGATTCCACAAGGTATTTCTCCTGACGTGGCACTTTGAATTCAATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR TCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATCCCAGACATCTGTCCTaGCTGTGTAGTTTTCCTGGA +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYPRHLS*LCSFPG
Trigger: TCCAGGAAAACTACACAGTCAGGACAGATGTCTGGG...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR TCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTTTGGACTCGATTCCATaGAGGCAATCCTGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCLDSIP*RQSCRE
Trigger: CTCTCTGCAGGATTGCCTTCATGGAATCGAGTCCAA...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000177145.8
CDS-3UTR TCA 90 bp TTCTTTGGCCTTCTGGTATCAGACAACTTATTTACAAAGGGTGATCATTCAATAACGACTCTTTTCCCGTaGTCTACTATGGTCCCGTTC +
Preference number: 4 (lower is better)
Translates to: FFGLLVSDNLFTKGDHSITTLFP*STMVPF
Trigger: GAACGGGACCATAGTAGATCACGGGAAAAGAGTCGT...TATTGAATGATCACCCTTTGTAAATAAGTTGTCTGATACCAGAAGGCCAAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR TCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTACGACTCTTTTCCCGTaGTCTACTATGGTCCCGTTC +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSTTLFP*STMVPF
Trigger: GAACGGGACCATAGTAGATCACGGGAAAAGAGTCGT...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR TCA 90 bp ACAGTTTATTACAACACTACATCTAGTGTAATCAAATCGGTGCTGTTTACAGACATGGTCCCGTTCTCTTaGTCGTTCACGTCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: TVYYNTTSSVIKSVLFTDMVPFS*SFTSSG
Trigger: TCCAGAAGACGTGAACGATCAAGAGAACGGGACCAT...GTCTGTAAACAGCACCGATTTGATTACACTAGATGTAGTGTTGTAATAAACTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGGGCATCGCCATTATTTaGAGATGGAGAGATGACATC +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQGIAII*RWRDDI
Trigger: GATGTCATCTCTCCATCTGCAAATAATGGCGATGCC...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTGTACACAACGTTTGGTaGGGCTCCTTTACCCACATC +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCVHNVW*GSFTHI
Trigger: GATGTGGGTAAAGGAGCCGCACCAAACGTTGTGTAC...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR GCA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGATCAGGAACTGCTTATTaGATGGAGTTACAACAGGAC +
Preference number: 4 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGSGTAY*MELQQD
Trigger: GTCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGA...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp CGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTTTTCAGATTTGCAACGATCATCTaGAGAGACTTTGGATTGTTT +
Preference number: 4 (lower is better)
Translates to: REDSFVLEGVPLPSAVFRFATII*RDFGLF
Trigger: AAACAATCCAAAGTCTCTGCAGATGATCGTTGCAAA...TCTGAAAACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176480.8
CDS-3UTR CCA 90 bp TTCTTTGGCCTTCTGGTATCAGACAACTTATTTACAAAGGGTGATCATTCAATAGTAGTCGCGATCTTCTaGGGCATCGCCATTATTTGC +
Preference number: 4 (lower is better)
Translates to: FFGLLVSDNLFTKGDHSIVVAIF*GIAIIC
Trigger: GCAAATAATGGCGATGCCCCAGAAGATCGCGACTAC...TATTGAATGATCACCCTTTGTAAATAAGTTGTCTGATACCAGAAGGCCAAAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR CCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATGTAGTCGCGATCTTCTaGGGCATCGCCATTATTTGC +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYVVAIF*GIAIIC
Trigger: GCAAATAATGGCGATGCCCCAGAAGATCGCGACTAC...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTCAGACCCATAGGACTTaGACTCGATTCCATGAAGGC +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSQTHRT*TRFHEG
Trigger: GCCTTCATGGAATCGAGTCCAAGTCCTATGGGTCTG...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCATCCCGTGATCTACTATaGTCCCGTTCTCTTGATCGT +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSSRDLL*SRSLDR
Trigger: ACGATCAAGAGAACGGGACCATAGTAGATCACGGGA...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR TCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTTGGACCTCGACTATCTaGTGTTGGCATGCCACTATT +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCWTSTI*CWHATI
Trigger: AATAGTGGCATGCCAACATCAGATAGTCGAGGTCCA...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR GCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGATGTCCACCATATTCTaGTTCCTGGTTGAACTCTTC +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQMSTIF*FLVELF
Trigger: GAAGAGTTCAACCAGGAAGCAGAATATGGTGGACAT...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTCAGGAACTGCTTATTaGATGGAGTTACAACAGGAC +
Preference number: 4 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQSGTAY*MELQQD
Trigger: GTCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGA...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATTCCCGTGATCTACTATaGTCCCGTTCTCTTGATCGT +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYSRDLL*SRSLDR
Trigger: ACGATCAAGAGAACGGGACCATAGTAGATCACGGGA...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTTCCCGTGATCTACTATaGTCCCGTTCTCTTGATCGT +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSSRDLL*SRSLDR
Trigger: ACGATCAAGAGAACGGGACCATAGTAGATCACGGGA...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATCTACTCCGAGATTTATaGCGACGACTCTTTTCCCGT +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYLLRDL*RRLFSR
Trigger: ACGGGAAAAGAGTCGTCGCCATAAATCTCGGAGTAG...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000177145.8
3UTR CAA 72 bp GAATCAAGTACAATACTAGAGCTTTCTTTACGCATCTaGCTGTATAGCCATAATTACACTGCCTATGGCACC +
Preference number: 4 (lower is better)
Translates to: ESSTILELSLRI*LYSHNYTAYGT
Trigger: GGTGCCATAGGCAGTGTAATTATGGCTATACAGCAAGATGCGTAAAGAAAGCTCTAGTATTGTACTTGATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
3UTR CAA 72 bp GCATCTTGTTGTATGAAACAGAATGTACTCAGGCTATaGGCACGTGTCAACACAGGGAAAGATAAAGTCTTA +
Preference number: 4 (lower is better)
Translates to: ASCCMKQNVLRL*ARVNTGKDKVL
Trigger: TAAGACTTTATCTTTCCCTGTGTTGACACGTGCCAATAGCCTGAGTACATTCTGTTTCATACAACAAGATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR GCA 90 bp GACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAATTTTGCAACGATCATCTaGAGAGACTTTGGATTGTTT +
Preference number: 4 (lower is better)
Translates to: DSFVLEGVPLPSAVMCQNFATII*RDFGLF
Trigger: AAACAATCCAAAGTCTCTGCAGATGATCGTTGCAAA...ATTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR GCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTATGTCCACCATATTCTaGTTCCTGGTTGAACTCTTC +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCMSTIF*FLVELF
Trigger: GAAGAGTTCAACCAGGAAGCAGAATATGGTGGACAT...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR GCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTTCAGGAACTGCTTATTaGATGGAGTTACAACAGGAC +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCSGTAY*MELQQD
Trigger: GTCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGA...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp AGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAAGATCCATTAACTTTTTaGAAGATGCTTCAGATCCAA +
Preference number: 4 (lower is better)
Translates to: RLFCLGRCSSSFSCNVSKDPLTF*KMLQIQ
Trigger: TTGGATCTGAAGCATCTTCCAAAAAGTTAATGGATC...TTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATGAACTGCTTATTGCATaGAGTTACAACAGGACTCTG +
Preference number: 4 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYELLIA*SYNRTL
Trigger: CAGAGTCCTGTTGTAACTCCATGCAATAAGCAGTTC...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
3UTR CAA 72 bp TCTACAAATCTATTTCCTTTCCCTCAAAGCAGTATATaGAATTCAAAGTGCCACGTCAGGAGAAATACCTTG +
Preference number: 4 (lower is better)
Translates to: STNLFPFPQSSI*NSKCHVRRNTL
Trigger: CAAGGTATTTCTCCTGACGTGGCACTTTGAATTCAATATACTGCTTTGAGGGAAAGGAAATAGATTTGTAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR GCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCATTTGCAACGATCATCTaGAGAGACTTTGGATTGTTT +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSFATII*RDFGLF
Trigger: AAACAATCCAAAGTCTCTGCAGATGATCGTTGCAAA...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CCA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCACTTTTAGGCCAAAAATaGGTATTTCCTCTATGCTGT +
Preference number: 4 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSLLGQK*VFPLCC
Trigger: ACAGCATAGAGGAAATACCCATTTTTGGCCTAAAAG...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176670.8
CDS-3UTR GCA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTTTTGCAACGATCATCTaGAGAGACTTTGGATTGTTT +
Preference number: 4 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCFATII*RDFGLF
Trigger: AAACAATCCAAAGTCTCTGCAGATGATCGTTGCAAA...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000177145.8
CDS-3UTR CCA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTGATCCATTAACTTTTTaGAAGATGCTTCAGATCCAA +
Preference number: 4 (lower is better)
Translates to: CDYKNPNFQILEVHNESSDPLTF*KMLQIQ
Trigger: TTGGATCTGAAGCATCTTCCAAAAAGTTAATGGATC...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS TCA 90 bp CGGTCTCCTCGGTTAGGAGGTCCTGCTAGAGGAGGTGGCAGAACCTaGCCAGGAGGTGGAGGACCTGGTGGACCAGGTGGGCCAGGTGGG +
Preference number: 5 (lower is better)
Translates to: RSPRLGGPARGGGRT*PGGGGPGGPGGPGG
Trigger: CCCACCTGGCCCACCTGGTCCACCAGGTCCTCCACCTCCTGGTCAGGTTCTGCCACCTCCTCTAGCAGGACCTCCTAACCGAGGAGACCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS TCA 90 bp TGGAAACCGGCCCCGTCCTCTACCACCTTGAGGAAACGCTGCGCGTaGACCGCCTCCTGGAGGACCGGCTTTCCCTTCCCCAGACATCTG +
Preference number: 5 (lower is better)
Translates to: WKPAPSSTTLRKRCA*TASWRTGFPFPRHL
Trigger: CAGATGTCTGGGGAAGGGAAAGCCGGTCCTCCAGGAGGCGGTTCACGCGCAGCGTTTCCTCAAGGTGGTAGAGGACGGGGCCGGTTTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS-3UTR CAA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTGGCCATATGGGTCTGTaGGTGGTGGACCTCGACTAT +
Preference number: 5 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCGHMGL*VVDLDY
Trigger: ATAGTCGAGGTCCACCACCAACAGACCCATATGGCC...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS CCA 90 bp CTACTCCGAGATTTATGGCGACGACTCTTTTCCCGTGATCTACTATaGTCCCGTTCTCTTGATCGTTCACGTCTTCTGGATCCAGACCCA +
Preference number: 5 (lower is better)
Translates to: LLRDLWRRLFSRDLL*SRSLDRSRLLDPDP
Trigger: TGGGTCTGGATCCAGAAGACGTGAACGATCAAGAGAACGGGACCATAGTAGATCACGGGAAAAGAGTCGTCGCCATAAATCTCGGAGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp AGAAAAGTACAAACCTCTCAAGCTGCTCATTACCTCAACCTATGGCACAGACCTTGGACGTGGTGGAGTTaGTCCAGCTGGAAAAGGTGG +
Preference number: 5 (lower is better)
Translates to: RKVQTSQAAHYLNLWHRPWTWWS*SSWKRW
Trigger: CCACCTTTTCCAGCTGGACAAACTCCACCACGTCCA...AGGTCTGTGCCATAGGTTGAGGTAATGAGCAGCTTGAGAGGTTTGTACTTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR CAA 90 bp AGAAAAGTACAAACCTCTCAAGCTGCTCATTACCTCAACCTATGGCACAGACCTGGCCATATGGGTCTGTaGGTGGTGGACCTCGACTAT +
Preference number: 5 (lower is better)
Translates to: RKVQTSQAAHYLNLWHRPGHMGL*VVDLDY
Trigger: ATAGTCGAGGTCCACCACCAACAGACCCATATGGCC...AGGTCTGTGCCATAGGTTGAGGTAATGAGCAGCTTGAGAGGTTTGTACTTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069168.13
CDS-3UTR CAA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTCACTCAGAGGTGTTCTaGCAGTATCCATTTCCCTCC +
Preference number: 5 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCHSEVF*QYPFPS
Trigger: GGAGGGAAATGGATACTGCAAGAACACCTCTGAGTG...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTATGGTCCCGTTCTCTaGATCGTTCACGTCTGGATC +
Preference number: 5 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFYGPVL*IVHVWI
Trigger: GATCCAGACGTGAACGATCAAGAGAACGGGACCATA...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
CDS-3UTR CAA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTATGGTCCCGTTCTCTaGATCGTTCACGTCTTCTGG +
Preference number: 5 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFYGPVL*IVHVFW
Trigger: CCAGAAGACGTGAACGATCAAGAGAACGGGACCATA...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTTATTCTGCTTCCTGGTaGAACTCTTCACCCACATCC +
Preference number: 5 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCYSASW*NSSPTS
Trigger: GGATGTGGGTGAAGAGTTCAACCAGGAAGCAGAATA...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAGGCCATATGGGTCTGTaGGTGGTGGACCTCGACTAT +
Preference number: 5 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSGHMGL*VVDLDY
Trigger: ATAGTCGAGGTCCACCACCAACAGACCCATATGGCC...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGACAAGGGCAAATCCCTTaGATTGTCCATTTGCCCGAT +
Preference number: 5 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGQGQIP*IVHLPD
Trigger: ATCGGGCAAATGGACAATCAAAGGGATTTGCCCTTG...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp CACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTTGGATTGCATTTCAAATaGACTCAGGAACTGCTTATT +
Preference number: 5 (lower is better)
Translates to: HKKQTAGQASLFPREDSFGLHFK*TQELLI
Trigger: AATAAGCAGTTCCTGAGTCAATTTGAAATGCAATCC...AAAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TCACAAGAAGCAAACTGCTGGACAAGCGTCACTTTTCCCCCGAGAAGACTCTTTGGATTGCATTTCAAATaGACTCAGGAACTGCTTATT +
Preference number: 5 (lower is better)
Translates to: SQEANCWTSVTFPPRRLFGLHFK*TQELLI
Trigger: AATAAGCAGTTCCTGAGTCAATTTGAAATGCAATCC...AAAGAGTCTTCTCGGGGGAAAAGTGACGCTTGTCCAGCAGTTTGCTTCTTGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TTTCCCCCGAGAAGACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTGGATTGCATTTCAAATaGACTCAGGAACTGCTTATT +
Preference number: 5 (lower is better)
Translates to: FPPRRLFCLGRCSSSFSCGLHFK*TQELLI
Trigger: AATAAGCAGTTCCTGAGTCAATTTGAAATGCAATCC...ACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTCTTCTCGGGGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp ACAGTTTATTACAACACTACATCTAGTGTAATCAAATCGGTGCTGTTTACAGACTGGACGTGGTGGAGTTaGTCCAGCTGGAAAAGGTGG +
Preference number: 5 (lower is better)
Translates to: TVYYNTTSSVIKSVLFTDWTWWS*SSWKRW
Trigger: CCACCTTTTCCAGCTGGACAAACTCCACCACGTCCA...GTCTGTAAACAGCACCGATTTGATTACACTAGATGTAGTGTTGTAATAAACTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069168.13
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTTGGACGTGGTGGAGTTaGTCCAGCTGGAAAAGGTGG +
Preference number: 5 (lower is better)
Translates to: CDYKNPNFQILEVHNESSWTWWS*SSWKRW
Trigger: CCACCTTTTCCAGCTGGACAAACTCCACCACGTCCA...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CAA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAAAGGCTGCCCAAAAGGTaGTCCAGGAAAAAGAACTGG +
Preference number: 5 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKRLPKR*SRKKNW
Trigger: CCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCT...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGAGGCTGCCCAAAAGGTaGTCCAGGAAAAAGAACTGG +
Preference number: 5 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQRLPKR*SRKKNW
Trigger: CCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCT...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TCAGATGCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTGGCCATATGGGTCTGTaGGTGGTGGACCTCGACTAT +
Preference number: 5 (lower is better)
Translates to: SDASRRLNQNKYLDHLKCGHMGL*VVDLDY
Trigger: ATAGTCGAGGTCCACCACCAACAGACCCATATGGCC...ACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGCATCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000177145.8
CDS-3UTR CAA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTATGGTCCCGTTCTCTaGATCGTTCACGTCTGGATC +
Preference number: 5 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQYGPVL*IVHVWI
Trigger: GATCCAGACGTGAACGATCAAGAGAACGGGACCATA...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
CDS-3UTR CAA 90 bp GCTTTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTATTCTGCTTCCTGGTaGAACTCTTCACCCACATCC +
Preference number: 5 (lower is better)
Translates to: ALFRSIPVQFIHEALQVQYSASW*NSSPTS
Trigger: GGATGTGGGTGAAGAGTTCAACCAGGAAGCAGAATA...CTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp CTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACAAGGGCAAATCCCTTaGATTGTCCATTTGCCCGAT +
Preference number: 5 (lower is better)
Translates to: LFSLSMKPYRFSSITRSKQGQIP*IVHLPD
Trigger: ATCGGGCAAATGGACAATCAAAGGGATTTGCCCTTG...TTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TTTATCCATGAAGCCTTACAGGTTCAGTTCAATCACAAGAAGCAAACTGCTGGACTCAGGAACTGCTTATaGCATGGAGTTACAACAGGA +
Preference number: 5 (lower is better)
Translates to: FIHEALQVQFNHKKQTAGLRNCL*HGVTTG
Trigger: TCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGAG...TCCAGCAGTTTGCTTCTTGTGATTGAACTGAACCTGTAAGGCTTCATGGATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp GACTCTTTTGTCTTGGAAGGTGTTCCTCTTCCTTCAGCTGTAATGTGTCAAAATCTCAGGAACTGCTTATaGCATGGAGTTACAACAGGA +
Preference number: 5 (lower is better)
Translates to: DSFVLEGVPLPSAVMCQNLRNCL*HGVTTG
Trigger: TCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGAG...ATTTTGACACATTACAGCTGAAGGAAGAGGAACACCTTCCAAGACAAAAGAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCAGGCTGCCCAAAAGGTaGTCCAGGAAAAAGAACTGG +
Preference number: 5 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFRLPKR*SRKKNW
Trigger: CCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCT...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCACACTCAGAGGTGTTCTaGCAGTATCCATTTCCCTCC +
Preference number: 5 (lower is better)
Translates to: YSDLFLFSLSMKPYRFSSHSEVF*QYPFPS
Trigger: GGAGGGAAATGGATACTGCAAGAACACCTCTGAGTG...TGAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCCACTCAGAGGTGTTCTaGCAGTATCCATTTCCCTCC +
Preference number: 5 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFHSEVF*QYPFPS
Trigger: GGAGGGAAATGGATACTGCAAGAACACCTCTGAGTG...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTAGGCTGCCCAAAAGGTaGTCCAGGAAAAAGAACTGG +
Preference number: 5 (lower is better)
Translates to: CDYKNPNFQILEVHNESSRLPKR*SRKKNW
Trigger: CCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCT...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CAA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATCACTCAGAGGTGTTCTaGCAGTATCCATTTCCCTCC +
Preference number: 5 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYHSEVF*QYPFPS
Trigger: GGAGGGAAATGGATACTGCAAGAACACCTCTGAGTG...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000177145.8
CDS-3UTR CAA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATTATGGTCCCGTTCTCTaGATCGTTCACGTCTGGATC +
Preference number: 5 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYYGPVL*IVHVWI
Trigger: GATCCAGACGTGAACGATCAAGAGAACGGGACCATA...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS CCA 90 bp TTTCCTGGATTGCATTTCAAATTGACTCAGGAACTGCTTATTGCATaGAGTTACAACAGGACTCTGACCATGAAGTTCTCTTTTAGGCAA +
Preference number: 5 (lower is better)
Translates to: FPGLHFKLTQELLIA*SYNRTLTMKFSFRQ
Trigger: TTGCCTAAAAGAGAACTTCATGGTCAGAGTCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGAGTCAATTTGAAATGCAATCCAGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS-3UTR CAA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTTATTCTGCTTCCTGGTaGAACTCTTCACCCACATCC +
Preference number: 5 (lower is better)
Translates to: CDYKNPNFQILEVHNESSYSASW*NSSPTS
Trigger: GGATGTGGGTGAAGAGTTCAACCAGGAAGCAGAATA...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CAA 90 bp TTATTCAGATCTATTCCTGTTCAGTTTATCCATGAAGCCTTACAGGTTCAGTTCCTCAGGAACTGCTTATaGCATGGAGTTACAACAGGA +
Preference number: 5 (lower is better)
Translates to: LFRSIPVQFIHEALQVQFLRNCL*HGVTTG
Trigger: TCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGAG...GAACTGAACCTGTAAGGCTTCATGGATAAACTGAACAGGAATAGATCTGAATAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
CDS-3UTR CAA 90 bp TGTGATTACAAGAATCCCAATTTCCAGATTTTAGAAGTACACAATGAGTCCTCTCTCAGGAACTGCTTATaGCATGGAGTTACAACAGGA +
Preference number: 5 (lower is better)
Translates to: CDYKNPNFQILEVHNESSLRNCL*HGVTTG
Trigger: TCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGAG...AGAGGACTCATTGTGTACTTCTAAAATCTGGAAATTGGGATTCTTGTAATCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS-3UTR CAA 90 bp GCTTCCAGAAGATTAAATCAGAACAAGTACTTGGACCACTTAAAATGTAGGTATGGATTGCATTTCAAATaGACTCAGGAACTGCTTATT +
Preference number: 5 (lower is better)
Translates to: ASRRLNQNKYLDHLKCRYGLHFK*TQELLI
Trigger: AATAAGCAGTTCCTGAGTCAATTTGAAATGCAATCC...ATACCTACATTTTAAGTGGTCCAAGTACTTGTTCTGATTTAATCTTCTGGAAGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177145.8
CDS TCA 72 bp GCCCCGTCCTCTACCACCTTGAGGAAACGCTGCGCGTaGACCGCCTCCTGGAGGACCGGCTTTCCCTTCCCC +
Preference number: 6 (lower is better)
Translates to: APSSTTLRKRCA*TASWRTGFPFP
Trigger: GGGGAAGGGAAAGCCGGTCCTCCAGGAGGCGGTTCACGCGCAGCGTTTCCTCAAGGTGGTAGAGGACGGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS TCA 72 bp ACAGCCCCTGGAAACCGGCCCCGTCCTCTACCACCTTaGGGAAACGCTGCGCGTGAACCGCCTCCTGGAGGA +
Preference number: 6 (lower is better)
Translates to: TAPGNRPRPLPP*GNAAREPPPGG
Trigger: TCCTCCAGGAGGCGGTTCACGCGCAGCGTTTCCTCAAGGTGGTAGAGGACGGGGCCGGTTTCCAGGGGCTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS CAA 90 bp TGGAGGCCCAGGAGGAAGTGGACCCAGCGGAGGCTGCCCAAAAGGTaGTCCAGGAAAAAGAACTGGTGGTGGAGGGCGGTCTCCTCGGTT +
Preference number: 6 (lower is better)
Translates to: WRPRRKWTQRRLPKR*SRKKNWWWRAVSSV
Trigger: AACCGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCTCCGCTGGGTCCACTTCCTCCTGGGCCTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS CCA 72 bp ATTCACATGTGGAGCTGGTGGCGGGGCACCTGGAGGTaGTCCCGGAAGATGTGGAGGAGGAGCAAGTGTGAG +
Preference number: 6 (lower is better)
Translates to: IHMWSWWRGTWR*SRKMWRRSKCE
Trigger: CTCACACTTGCTCCTCCTCCACATCTTCCGGGACCACCTCCAGGTGCCCCGCCACCAGCTCCACATGTGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS CCA 72 bp CGGAGGCTGCCCAAAAGGTTGTCCAGGAAAAAGAACTaGTGGTGGAGGGCGGTCTCCTCGGTTAGGAGGTCC +
Preference number: 6 (lower is better)
Translates to: RRLPKRLSRKKN*WWRAVSSVRRS
Trigger: GGACCTCCTAACCGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCTCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS CCA 72 bp AGGCTGCCCAAAAGGTTGTCCAGGAAAAAGAACTGGTaGTGGAGGGCGGTCTCCTCGGTTAGGAGGTCCTGC +
Preference number: 6 (lower is better)
Translates to: RLPKRLSRKKNW*WRAVSSVRRSC
Trigger: GCAGGACCTCCTAACCGAGGAGACCGCCCTCCACCACCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS CAA 72 bp CCCTATCATATGGGGGAGGTCGGCCATATGGGTCTGTaGGTGGTGGACCTCGACTATCTGATGTTGGCATGC +
Preference number: 6 (lower is better)
Translates to: PYHMGEVGHMGL*VVDLDYLMLAC
Trigger: GCATGCCAACATCAGATAGTCGAGGTCCACCACCAACAGACCCATATGGCCGACCTCCCCCATATGATAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS CAA 90 bp TATGGCGACGACTCTTTTCCCGTGATCTACTATGGTCCCGTTCTCTaGATCGTTCACGTCTTCTGGATCCAGACCCATAGGACTTGGACT +
Preference number: 6 (lower is better)
Translates to: YGDDSFPVIYYGPVL*IVHVFWIQTHRTWT
Trigger: AGTCCAAGTCCTATGGGTCTGGATCCAGAAGACGTGAACGATCAAGAGAACGGGACCATAGTAGATCACGGGAAAAGAGTCGTCGCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS TCA 72 bp GCCATATGGGTCTGTTGGTGGTGGACCTCGACTATCTaGTGTTGGCATGCCACTATTAGTTGGTGGAGGAAA +
Preference number: 6 (lower is better)
Translates to: AIWVCWWWTSTI*CWHATISWWRK
Trigger: TTTCCTCCACCAACTAATAGTGGCATGCCAACATCAGATAGTCGAGGTCCACCACCAACAGACCCATATGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS CAA 72 bp GACTCTTTTCCCGTGATCTACTATGGTCCCGTTCTCTaGATCGTTCACGTCTGGATCCAGACCCATAGGACT +
Preference number: 6 (lower is better)
Translates to: DSFPVIYYGPVL*IVHVWIQTHRT
Trigger: AGTCCTATGGGTCTGGATCCAGACGTGAACGATCAAGAGAACGGGACCATAGTAGATCACGGGAAAAGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000177145.8
CDS CAA 72 bp GACTCTTTTCCCGTGATCTACTATGGTCCCGTTCTCTaGATCGTTCACGTCTTCTGGATCCAGACCCATAGG +
Preference number: 6 (lower is better)
Translates to: DSFPVIYYGPVL*IVHVFWIQTHR
Trigger: CCTATGGGTCTGGATCCAGAAGACGTGAACGATCAAGAGAACGGGACCATAGTAGATCACGGGAAAAGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS CCA 72 bp GATTTATGGCGACGACTCTTTTCCCGTGATCTACTATaGTCCCGTTCTCTTGATCGTTCACGTCTGGATCCA +
Preference number: 6 (lower is better)
Translates to: DLWRRLFSRDLL*SRSLDRSRLDP
Trigger: TGGATCCAGACGTGAACGATCAAGAGAACGGGACCATAGTAGATCACGGGAAAAGAGTCGTCGCCATAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000177145.8
CDS CCA 72 bp GATTTATGGCGACGACTCTTTTCCCGTGATCTACTATaGTCCCGTTCTCTTGATCGTTCACGTCTTCTGGAT +
Preference number: 6 (lower is better)
Translates to: DLWRRLFSRDLL*SRSLDRSRLLD
Trigger: ATCCAGAAGACGTGAACGATCAAGAGAACGGGACCATAGTAGATCACGGGAAAAGAGTCGTCGCCATAAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000176480.8
ENSMUST00000176686.8
CDS TCA 72 bp CCTGACTGTGTAGTTTTCCTGGATTGCATTTCAAATTaGCTCAGGAACTGCTTATTGCATGGAGTTACAACA +
Preference number: 6 (lower is better)
Translates to: PDCVVFLDCISN*LRNCLLHGVTT
Trigger: TGTTGTAACTCCATGCAATAAGCAGTTCCTGAGTCAATTTGAAATGCAATCCAGGAAAACTACACAGTCAGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS GCA 72 bp TGGATTGCATTTCAAATTGACTCAGGAACTGCTTATTaGATGGAGTTACAACAGGACTCTGACCATGAAGTT +
Preference number: 6 (lower is better)
Translates to: WIAFQIDSGTAY*MELQQDSDHEV
Trigger: AACTTCATGGTCAGAGTCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGAGTCAATTTGAAATGCAATCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8
CDS CCA 72 bp TTGCATTTCAAATTGACTCAGGAACTGCTTATTGCATaGAGTTACAACAGGACTCTGACCATGAAGTTCTCT +
Preference number: 6 (lower is better)
Translates to: LHFKLTQELLIA*SYNRTLTMKFS
Trigger: AGAGAACTTCATGGTCAGAGTCCTGTTGTAACTCCATGCAATAAGCAGTTCCTGAGTCAATTTGAAATGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069168.13
ENSMUST00000176670.8
ENSMUST00000176686.8
ENSMUST00000177145.8