RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPSF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034022

Ensembl transcript IDs: ENSMUST00000071898.7, ENSMUST00000229287.2, ENSMUST00000230157.2, ENSMUST00000231042.2

Found 207 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCTCTCTCTGCGGAAAGGCAGAACTACCAGCCTCGTGCCATAGATaGGCATTGCTGCACAGCGCCCGTCAGGGTCCACCCGCACACGAG +
Preference number: 1 (lower is better)
Translates to: GSLCGKAELPASCHR*ALLHSARQGPPAHE
Trigger: CTCGTGTGCGGGTGGACCCTGACGGGCGCTGTGCAGCAATGCTCATCTATGGCACGAGGCTGGTAGTTCTGCCTTTCCGCAGAGAGAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR TCA 90 bp GCAAGATGCGCCGGTCTACGTGCAACATTCGGAAGGCGCGGGGGTTaGGGCCAGCGTGGTGGGGTAGCATGGTCGTCAGTGCATTCTGCA +
Preference number: 1 (lower is better)
Translates to: ARCAGLRATFGRRGG*GQRGGVAWSSVHSA
Trigger: TGCAGAATGCACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCGAATGTTGCACGTAGACCGGCGCATCTTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 90 bp GCGGAAAGGCAGAACTACCAGCCTCGTGCCATAGATGAGCATTGCTaGACAGCGCCCGTCAGGGTCCACCCGCACACGAGGCGTATGCAC +
Preference number: 1 (lower is better)
Translates to: AERQNYQPRAIDEHC*TAPVRVHPHTRRMH
Trigger: GTGCATACGCCTCGTGTGCGGGTGGACCCTGACGGGCGCTGTGCAGCAATGCTCATCTATGGCACGAGGCTGGTAGTTCTGCCTTTCCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR TCA 90 bp CAGCCACGGCACACTGCACGATGGGGGCGCCCAGGTCCACAGGGATaGAGTGCAATTGATTCACGCCTTCCAACAGGCGAATGCCCAGTG +
Preference number: 1 (lower is better)
Translates to: QPRHTARWGRPGPQG*SAIDSRLPTGECPV
Trigger: CACTGGGCATTCGCCTGTTGGAAGGCGTGAATCAATTGCACTTCATCCCTGTGGACCTGGGCGCCCCCATCGTGCAGTGTGCCGTGGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 90 bp TCTGCGGAAAGGCAGAACTACCAGCCTCGTGCCATAGATGAGCATTaGTGCACAGCGCCCGTCAGGGTCCACCCGCACACGAGGCGTATG +
Preference number: 1 (lower is better)
Translates to: SAERQNYQPRAIDEH*CTAPVRVHPHTRRM
Trigger: CATACGCCTCGTGTGCGGGTGGACCCTGACGGGCGCTGTGCAGCAATGCTCATCTATGGCACGAGGCTGGTAGTTCTGCCTTTCCGCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 90 bp CGGTCTACGTGCAACATTCGGAAGGCGCGGGGGTTGAGGCCAGCGTaGTGGGGTAGCATGGTCGTCAGTGCATTCTGCAGCATCAGCAAG +
Preference number: 1 (lower is better)
Translates to: RSTCNIRKARGLRPA*WGSMVVSAFCSISK
Trigger: CTTGCTGATGCTGCAGAATGCACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCGAATGTTGCACGTAGACCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 90 bp ATTGCTGCACAGCGCCCGTCAGGGTCCACCCGCACACGAGGCGTATaGACGTTCTGCACAAACCCATCCCGAAGTTCAGGCTCCTCAAAG +
Preference number: 1 (lower is better)
Translates to: IAAQRPSGSTRTRGV*TFCTNPSRSSGSSK
Trigger: CTTTGAGGAGCCTGAACTTCGGGATGGGTTTGTGCAGAACGTGCATACGCCTCGTGTGCGGGTGGACCCTGACGGGCGCTGTGCAGCAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 90 bp TTCGCCCATCCTCCTCTGCTTTCGGGGCACTGGGCTCCTGCTCTGTaGTCTCTGCTTTGGGGGTTTCTTCCTCCTCTTTCCGCACAGGAG +
Preference number: 1 (lower is better)
Translates to: FAHPPLLSGHWAPAL*SLLWGFLPPLSAQE
Trigger: CTCCTGTGCGGAAAGAGGAGGAAGAAACCCCCAAAGCAGAGAGCACAGAGCAGGAGCCCAGTGCCCCGAAAGCAGAGGAGGATGGGCGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 90 bp CATTGTGGAAAGGAGCAAAGGAGTCAATGGGGCCATCAATGCCCATaGGGTGCAGACGCAGAGCTCCGCGGCCAGTCACCAGGAGCCAGT +
Preference number: 1 (lower is better)
Translates to: HCGKEQRSQWGHQCP*GADAELRGQSPGAS
Trigger: ACTGGCTCCTGGTGACTGGCCGCGGAGCTCTGCGTCTGCACCCCATGGGCATTGATGGCCCCATTGACTCCTTTGCTCCTTTCCACAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 90 bp TCTACGTGCAACATTCGGAAGGCGCGGGGGTTGAGGCCAGCGTGGTaGGGTAGCATGGTCGTCAGTGCATTCTGCAGCATCAGCAAGCGT +
Preference number: 1 (lower is better)
Translates to: STCNIRKARGLRPAW*GSMVVSAFCSISKR
Trigger: ACGCTTGCTGATGCTGCAGAATGCACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCGAATGTTGCACGTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 90 bp CTGGGCCTCACTGCCATAAACTTCAATTTCATCCACCTCGTCCTGTaGCACCGTCTTGCCTCCTGTCCAGCCCACTGCAGGCTCCACTCG +
Preference number: 1 (lower is better)
Translates to: LGLTAINFNFIHLVL*HRLASCPAHCRLHS
Trigger: CGAGTGGAGCCTGCAGTGGGCTGGACAGGAGGCAAGACGGTGCCACAGGACGAGGTGGATGAAATTGAAGTTTATGGCAGTGAGGCCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 90 bp ATCCTCCTCTGCTTTCGGGGCACTGGGCTCCTGCTCTGTGCTCTCTaGTTTGGGGGTTTCTTCCTCCTCTTTCCGCACAGGAGCAATGAC +
Preference number: 1 (lower is better)
Translates to: ILLCFRGTGLLLCAL*FGGFFLLFPHRSND
Trigger: GTCATTGCTCCTGTGCGGAAAGAGGAGGAAGAAACCCCCAAAGCAGAGAGCACAGAGCAGGAGCCCAGTGCCCCGAAAGCAGAGGAGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 90 bp GGGTTGAGGCCAGCGTGGTGGGGTAGCATGGTCGTCAGTGCATTCTaGAGCATCAGCAAGCGTCGGTATGTCTTTTCTTGCATGGGCAGC +
Preference number: 1 (lower is better)
Translates to: GLRPAWWGSMVVSAF*SISKRRYVFSCMGS
Trigger: GCTGCCCATGCAAGAAAAGACATACCGACGCTTGCTGATGCTGCAGAATGCACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 90 bp CCCAGAGCAACCAACAACACCTCCTTAACCAAAGGCAGCTCCCCCTaGCGTGTGGCTTCTTCCTTTCGGACTTCACCTTGTGTAGTGGGC +
Preference number: 1 (lower is better)
Translates to: PRATNNTSLTKGSSP*RVASSFRTSPCVVG
Trigger: GCCCACTACACAAGGTGAAGTCCGAAAGGAAGAAGCCACACGCCAGGGGGAGCTGCCTTTGGTTAAGGAGGTGTTGTTGGTTGCTCTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR TCA 90 bp TGGGCAGCAGGAGCCCAATGCCACCGTCAAGGGTTGCAAACCATGTaGTATGCTTGTTTTCCCACACGACTGACTTCTTGCTGGGGCCCT +
Preference number: 1 (lower is better)
Translates to: WAAGAQCHRQGLQTM*YACFPTRLTSCWGP
Trigger: AGGGCCCCAGCAAGAAGTCAGTCGTGTGGGAAAACAAGCATATCACATGGTTTGCAACCCTTGACGGTGGCATTGGGCTCCTGCTGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 90 bp AGCAGGAGCCCAATGCCACCGTCAAGGGTTGCAAACCATGTGATATaGTTGTTTTCCCACACGACTGACTTCTTGCTGGGGCCCTCGGCA +
Preference number: 1 (lower is better)
Translates to: SRSPMPPSRVANHVI*LFSHTTDFLLGPSA
Trigger: TGCCGAGGGCCCCAGCAAGAAGTCAGTCGTGTGGGAAAACAAGCATATCACATGGTTTGCAACCCTTGACGGTGGCATTGGGCTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 90 bp TCCGGGCTCCATTGTGACCATACTGGTGGTAAGGACACTAGCAGCTaGCTTGTCAAAGTGAAACGCTCGGACACTTCGCATGCCGTCAGT +
Preference number: 1 (lower is better)
Translates to: SGLHCDHTGGKDTSS*LVKVKRSDTSHAVS
Trigger: ACTGACGGCATGCGAAGTGTCCGAGCGTTTCACTTTGACAAGGCAGCTGCTAGTGTCCTTACCACCAGTATGGTCACAATGGAGCCCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 90 bp TGCCATAAACTTCAATTTCATCCACCTCGTCCTGTGGCACCGTCTTaGCTCCTGTCCAGCCCACTGCAGGCTCCACTCGCTTCTTCTTTG +
Preference number: 1 (lower is better)
Translates to: CHKLQFHPPRPVAPS*LLSSPLQAPLASSL
Trigger: CAAAGAAGAAGCGAGTGGAGCCTGCAGTGGGCTGGACAGGAGGCAAGACGGTGCCACAGGACGAGGTGGATGAAATTGAAGTTTATGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 90 bp GGCCTGGGTACAGTCAAAAGGCAAGCTGGTGAGGGACCAGATGACTaGATGGACTTTCTGTGTGATGTTCAGCGAGATAGCCACAATGGA +
Preference number: 1 (lower is better)
Translates to: GLGTVKRQAGEGPDD*MDFLCDVQRDSHNG
Trigger: TCCATTGTGGCTATCTCGCTGAACATCACACAGAAAGTCCATCCAGTCATCTGGTCCCTCACCAGCTTGCCTTTTGACTGTACCCAGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 90 bp TGGGTACAGTCAAAAGGCAAGCTGGTGAGGGACCAGATGACTGGATaGACTTTCTGTGTGATGTTCAGCGAGATAGCCACAATGGAGCAC +
Preference number: 1 (lower is better)
Translates to: WVQSKGKLVRDQMTG*TFCVMFSEIATMEH
Trigger: GTGCTCCATTGTGGCTATCTCGCTGAACATCACACAGAAAGTCCATCCAGTCATCTGGTCCCTCACCAGCTTGCCTTTTGACTGTACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR TCA 90 bp GGCTCGTTTCTGAGCCCAGGCCTTCTGCCTCGGAGCCACTTCGGCCACCCAGTTGTGCGCAGTCTAGGGTaGTCCGTACACCCTCTTGGG +
Preference number: 2 (lower is better)
Translates to: GSFLSPGLLPRSHFGHPVVRSLG*SVHPLG
Trigger: CCCAAGAGGGTGTACGGATCACCCTAGACTGCGCAC...AACTGGGTGGCCGAAGTGGCTCCGAGGCAGAAGGCCTGGGCTCAGAAACGAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CAA 90 bp TGCAAGATGCGCCGGTCTACGTGCAACATTCGGAAGGCGCGGGGGTaGAGGCCAGCGTGGTGGGGTAGCATGGTCGTCAGTGCATTCTGC +
Preference number: 2 (lower is better)
Translates to: CKMRRSTCNIRKARG*RPAWWGSMVVSAFC
Trigger: GCAGAATGCACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCGAATGTTGCACGTAGACCGGCGCATCTTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR GCA 90 bp TTCTGCAAGATGCGCCGGTCTACGTGCAACATTCGGAAGGCGCGGGGGTTGAGGATAGATGAGCATTGCTaGACAGCGCCCGTCAGGGTC +
Preference number: 2 (lower is better)
Translates to: FCKMRRSTCNIRKARGLRIDEHC*TAPVRV
Trigger: GACCCTGACGGGCGCTGTGCAGCAATGCTCATCTAT...CCTCAACCCCCGCGCCTTCCGAATGTTGCACGTAGACCGGCGCATCTTGCAGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR GCA 90 bp TGCTCTGTGCTCTCTGCTTTGGGGGTTTCTTCCTCCTCTTTCCGCACAGGAGCACTGGCTGGGGGCTCCTaGAGCTTCTCCGTGTACTTG +
Preference number: 2 (lower is better)
Translates to: CSVLSALGVSSSSFRTGALAGGS*SFSVYL
Trigger: CAAGTACACGGAGAAGCTGCAGGAGCCCCCAGCCAG...TGCTCCTGTGCGGAAAGAGGAGGAAGAAACCCCCAAAGCAGAGAGCACAGAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR TCA 90 bp GTGATCCGTACACCCTCTTGGGTACGCAATGGGAAAGCGGTGGTGCCTGTGGTGGAGCCCGTACATCAATaGTGTAGCTGGGCAAGAAGC +
Preference number: 2 (lower is better)
Translates to: VIRTPSWVRNGKAVVPVVEPVHQ*CSWARS
Trigger: GCTTCTTGCCCAGCTACATCATTGATGTACGGGCTC...CACCACAGGCACCACCGCTTTCCCATTGCGTACCCAAGAGGGTGTACGGATCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR CCA 90 bp TGCTCTGTGCTCTCTGCTTTGGGGGTTTCTTCCTCCTCTTTCCGCACAGGAGCAGGCACAGCCAGGGCCTaGGTACAGTCAAAAGGCAAG +
Preference number: 2 (lower is better)
Translates to: CSVLSALGVSSSSFRTGAGTARA*VQSKGK
Trigger: CTTGCCTTTTGACTGTACCCAGGCCCTGGCTGTGCC...TGCTCCTGTGCGGAAAGAGGAGGAAGAAACCCCCAAAGCAGAGAGCACAGAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR CCA 90 bp TTCTGCAAGATGCGCCGGTCTACGTGCAACATTCGGAAGGCGCGGGGGTTGAGGAGCTCCATGATCTCCTaGCCAGTCTGTAGGATCATG +
Preference number: 2 (lower is better)
Translates to: FCKMRRSTCNIRKARGLRSSMIS*PVCRIM
Trigger: CATGATCCTACAGACTGGCCAGGAGATCATGGAGCT...CCTCAACCCCCGCGCCTTCCGAATGTTGCACGTAGACCGGCGCATCTTGCAGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CAA 90 bp AGGAGCCCAATGCCACCGTCAAGGGTTGCAAACCATGTGATATGCTaGTTTTCCCACACGACTGACTTCTTGCTGGGGCCCTCGGCAGCA +
Preference number: 2 (lower is better)
Translates to: RSPMPPSRVANHVIC*FSHTTDFLLGPSAA
Trigger: TGCTGCCGAGGGCCCCAGCAAGAAGTCAGTCGTGTGGGAAAACAAGCATATCACATGGTTTGCAACCCTTGACGGTGGCATTGGGCTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR TCA 90 bp CCAACAGGCGAATGCCCAGTGGCGAGACTTGAACAATGTAACGATTGTCCCCAAGCCTCGTGCCATAGATaGGCATTGCTGCACAGCGCC +
Preference number: 2 (lower is better)
Translates to: PTGECPVARLEQCNDCPQASCHR*ALLHSA
Trigger: GGCGCTGTGCAGCAATGCTCATCTATGGCACGAGGC...TTGGGGACAATCGTTACATTGTTCAAGTCTCGCCACTGGGCATTCGCCTGTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR TCA 90 bp CAGGCGAATGCCCAGTGGCGAGACTTGAACAATGTAACGATTGTCCCCAATGTTTCTGCCCTTCGCCCATaGGCCCCTCATGTTCCTCAG +
Preference number: 2 (lower is better)
Translates to: QANAQWRDLNNVTIVPNVSALRP*APHVPQ
Trigger: CTGAGGAACATGAGGGGCTCATGGGCGAAGGGCAGA...AACATTGGGGACAATCGTTACATTGTTCAAGTCTCGCCACTGGGCATTCGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR CCA 90 bp CTTGGACGGCTTTGGCTTCTTTTCACGGAAGTTGATATTGTGAGGGACCTTTTTCCTCACGGACGGAGCTaGCTGGGGGCTCCTGCAGCT +
Preference number: 2 (lower is better)
Translates to: LGRLWLLFTEVDIVRDLFPHGRS*LGAPAA
Trigger: AGCTGCAGGAGCCCCCAGCCAGCTCCGTCCGTGAGG...AAAAAGGTCCCTCACAATATCAACTTCCGTGAAAAGAAGCCAAAGCCGTCCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR GCA 90 bp CCAACAGGCGAATGCCCAGTGGCGAGACTTGAACAATGTAACGATTGTCCCCAACGCACACGAGGCGTATaGACGTTCTGCACAAACCCA +
Preference number: 2 (lower is better)
Translates to: PTGECPVARLEQCNDCPQRTRGV*TFCTNP
Trigger: TGGGTTTGTGCAGAACGTGCATACGCCTCGTGTGCG...TTGGGGACAATCGTTACATTGTTCAAGTCTCGCCACTGGGCATTCGCCTGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR GCA 90 bp CTCTTTGGCTTCTGGCAGATACATATACACCATAAGATTGCGGTCTCGGTCAGACCTGTGGCACCGTCTTaGCTCCTGTCCAGCCCACTG +
Preference number: 2 (lower is better)
Translates to: LFGFWQIHIHHKIAVSVRPVAPS*LLSSPL
Trigger: CAGTGGGCTGGACAGGAGGCAAGACGGTGCCACAGG...TCTGACCGAGACCGCAATCTTATGGTGTATATGTATCTGCCAGAAGCCAAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR GCA 90 bp CCAACAGGCGAATGCCCAGTGGCGAGACTTGAACAATGTAACGATTGTCCCCAATGGGCTCCTGCTCTGTaGTCTCTGCTTTGGGGGTTT +
Preference number: 2 (lower is better)
Translates to: PTGECPVARLEQCNDCPQWAPAL*SLLWGF
Trigger: AAACCCCCAAAGCAGAGAGCACAGAGCAGGAGCCCA...TTGGGGACAATCGTTACATTGTTCAAGTCTCGCCACTGGGCATTCGCCTGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR CCA 90 bp CTCTTTGGCTTCTGGCAGATACATATACACCATAAGATTGCGGTCTCGGTCAGAGCTCCCCCTGGCGTGTaGCTTCTTCCTTTCGGACTT +
Preference number: 2 (lower is better)
Translates to: LFGFWQIHIHHKIAVSVRAPPGV*LLPFGL
Trigger: AAGTCCGAAAGGAAGAAGCCACACGCCAGGGGGAGC...TCTGACCGAGACCGCAATCTTATGGTGTATATGTATCTGCCAGAAGCCAAAGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CAA 90 bp CAATTGATTCACGCCTTCCAACAGGCGAATGCCCAGTGGCGAGACTaGAACAATGTAACGATTGTCCCCAATGTTTCCAGCAAAGACAGT +
Preference number: 2 (lower is better)
Translates to: QLIHAFQQANAQWRD*NNVTIVPNVSSKDS
Trigger: ACTGTCTTTGCTGGAAACATTGGGGACAATCGTTACATTGTTCAAGTCTCGCCACTGGGCATTCGCCTGTTGGAAGGCGTGAATCAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR CCA 90 bp CTTGGACGGCTTTGGCTTCTTTTCACGGAAGTTGATATTGTGAGGGACCTTTTTCTGTGCTCTCTGCTTTaGGGGTTTCTTCCTCCTCTT +
Preference number: 2 (lower is better)
Translates to: LGRLWLLFTEVDIVRDLFLCSLL*GFLPPL
Trigger: AAGAGGAGGAAGAAACCCCCAAAGCAGAGAGCACAG...AAAAAGGTCCCTCACAATATCAACTTCCGTGAAAAGAAGCCAAAGCCGTCCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR TCA 72 bp GCCGGTCTACGTGCAACATTCGGAAGGCGCGGGGGTTaGGGCCAGCGTGGTGGGGTAGCATGGTCGTCAGTG +
Preference number: 3 (lower is better)
Translates to: AGLRATFGRRGG*GQRGGVAWSSV
Trigger: CACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCGAATGTTGCACGTAGACCGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 72 bp GTCTGCCTTGAAGGGTGCAGGGTCACGATCAGCCGGTaGCTGGCTGCTCCTACGGGCCTCCTCTTTGCTGGG +
Preference number: 3 (lower is better)
Translates to: VCLEGCRVTISR*LAAPTGLLFAG
Trigger: CCCAGCAAAGAGGAGGCCCGTAGGAGCAGCCAGCCACCGGCTGATCGTGACCCTGCACCCTTCAAGGCAGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 72 bp CAGCGCCCGTCAGGGTCCACCCGCACACGAGGCGTATaGACGTTCTGCACAAACCCATCCCGAAGTTCAGGC +
Preference number: 3 (lower is better)
Translates to: QRPSGSTRTRGV*TFCTNPSRSSG
Trigger: GCCTGAACTTCGGGATGGGTTTGTGCAGAACGTGCATACGCCTCGTGTGCGGGTGGACCCTGACGGGCGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 72 bp CAGAACTACCAGCCTCGTGCCATAGATGAGCATTGCTaGACAGCGCCCGTCAGGGTCCACCCGCACACGAGG +
Preference number: 3 (lower is better)
Translates to: QNYQPRAIDEHC*TAPVRVHPHTR
Trigger: CCTCGTGTGCGGGTGGACCCTGACGGGCGCTGTGCAGCAATGCTCATCTATGGCACGAGGCTGGTAGTTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 72 bp AGGCAGAACTACCAGCCTCGTGCCATAGATGAGCATTaGTGCACAGCGCCCGTCAGGGTCCACCCGCACACG +
Preference number: 3 (lower is better)
Translates to: RQNYQPRAIDEH*CTAPVRVHPHT
Trigger: CGTGTGCGGGTGGACCCTGACGGGCGCTGTGCAGCAATGCTCATCTATGGCACGAGGCTGGTAGTTCTGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 72 bp GTGTCCTGCCTCACAGCCACCCGCCCTGGCCAAGTCTaGTTGGGCTCAAACAGGATAAGCAGGGTGGGCTCA +
Preference number: 3 (lower is better)
Translates to: VSCLTATRPGQV*LGSNRISRVGS
Trigger: TGAGCCCACCCTGCTTATCCTGTTTGAGCCCAACCAGACTTGGCCAGGGCGGGTGGCTGTGAGGCAGGACAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 72 bp TGCAACATTCGGAAGGCGCGGGGGTTGAGGCCAGCGTaGTGGGGTAGCATGGTCGTCAGTGCATTCTGCAGC +
Preference number: 3 (lower is better)
Translates to: CNIRKARGLRPA*WGSMVVSAFCS
Trigger: GCTGCAGAATGCACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCGAATGTTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 72 bp TGTGGAAAGGAGCAAAGGAGTCAATGGGGCCATCAATaGCCATGGGGTGCAGACGCAGAGCTCCGCGGCCAG +
Preference number: 3 (lower is better)
Translates to: CGKEQRSQWGHQ*PWGADAELRGQ
Trigger: CTGGCCGCGGAGCTCTGCGTCTGCACCCCATGGGCATTGATGGCCCCATTGACTCCTTTGCTCCTTTCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 72 bp AACATTCGGAAGGCGCGGGGGTTGAGGCCAGCGTGGTaGGGTAGCATGGTCGTCAGTGCATTCTGCAGCATC +
Preference number: 3 (lower is better)
Translates to: NIRKARGLRPAW*GSMVVSAFCSI
Trigger: GATGCTGCAGAATGCACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCGAATGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR TCA 72 bp CACACTGCACGATGGGGGCGCCCAGGTCCACAGGGATaGAGTGCAATTGATTCACGCCTTCCAACAGGCGAA +
Preference number: 3 (lower is better)
Translates to: HTARWGRPGPQG*SAIDSRLPTGE
Trigger: TTCGCCTGTTGGAAGGCGTGAATCAATTGCACTTCATCCCTGTGGACCTGGGCGCCCCCATCGTGCAGTGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 72 bp TCAGGGTCCACCCGCACACGAGGCGTATGCACGTTCTaGACAAACCCATCCCGAAGTTCAGGCTCCTCAAAG +
Preference number: 3 (lower is better)
Translates to: SGSTRTRGVCTF*TNPSRSSGSSK
Trigger: CTTTGAGGAGCCTGAACTTCGGGATGGGTTTGTGCAGAACGTGCATACGCCTCGTGTGCGGGTGGACCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR TCA 72 bp TGCAAACCATGTGATATGCTTGTTTTCCCACACGACTaGCTTCTTGCTGGGGCCCTCGGCAGCACCTCGGCA +
Preference number: 3 (lower is better)
Translates to: CKPCDMLVFPHD*LLAGALGSTSA
Trigger: TGCCGAGGTGCTGCCGAGGGCCCCAGCAAGAAGTCAGTCGTGTGGGAAAACAAGCATATCACATGGTTTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 72 bp ACCAACAACACCTCCTTAACCAAAGGCAGCTCCCCCTaGCGTGTGGCTTCTTCCTTTCGGACTTCACCTTGT +
Preference number: 3 (lower is better)
Translates to: TNNTSLTKGSSP*RVASSFRTSPC
Trigger: ACAAGGTGAAGTCCGAAAGGAAGAAGCCACACGCCAGGGGGAGCTGCCTTTGGTTAAGGAGGTGTTGTTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR CAA 90 bp GCAATTGATTCACGCCTTCCAACAGGCGAATGCCCAGTGGCGAGACTTGAACAACCTGGCCAAGTCTGGTaGGGCTCAAACAGGATAAGC +
Preference number: 3 (lower is better)
Translates to: AIDSRLPTGECPVARLEQPGQVW*GSNRIS
Trigger: GCTTATCCTGTTTGAGCCCAACCAGACTTGGCCAGG...TTGTTCAAGTCTCGCCACTGGGCATTCGCCTGTTGGAAGGCGTGAATCAATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR CAA 90 bp GTGATCCGTACACCCTCTTGGGTACGCAATGGGAAAGCGGTGGTGCCTGTGGTGTGCAGGTCAATGATGTaGAGTAGTTTCTCATCCAGA +
Preference number: 3 (lower is better)
Translates to: VIRTPSWVRNGKAVVPVVCRSMM*SSFSSR
Trigger: TCTGGATGAGAAACTACTCAACATCATTGACCTGCA...CACCACAGGCACCACCGCTTTCCCATTGCGTACCCAAGAGGGTGTACGGATCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR TCA 72 bp GGAGCCCAATGCCACCGTCAAGGGTTGCAAACCATGTaGTATGCTTGTTTTCCCACACGACTGACTTCTTGC +
Preference number: 3 (lower is better)
Translates to: GAQCHRQGLQTM*YACFPTRLTSC
Trigger: GCAAGAAGTCAGTCGTGTGGGAAAACAAGCATATCACATGGTTTGCAACCCTTGACGGTGGCATTGGGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 72 bp CCAATGCCACCGTCAAGGGTTGCAAACCATGTGATATaGTTGTTTTCCCACACGACTGACTTCTTGCTGGGG +
Preference number: 3 (lower is better)
Translates to: PMPPSRVANHVI*LFSHTTDFLLG
Trigger: CCCCAGCAAGAAGTCAGTCGTGTGGGAAAACAAGCATATCACATGGTTTGCAACCCTTGACGGTGGCATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR TCA 72 bp TGGGGGTTTCTTCCTCCTCTTTCCGCACAGGAGCAATaGCTGTCCACATATCATAGCAGCCAGGAAGTTCAA +
Preference number: 3 (lower is better)
Translates to: WGFLPPLSAQEQ*LSTYHSSQEVQ
Trigger: TTGAACTTCCTGGCTGCTATGATATGTGGACAGTCATTGCTCCTGTGCGGAAAGAGGAGGAAGAAACCCCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR GCA 72 bp CATTGTGACCATACTGGTGGTAAGGACACTAGCAGCTaGCTTGTCAAAGTGAAACGCTCGGACACTTCGCAT +
Preference number: 3 (lower is better)
Translates to: HCDHTGGKDTSS*LVKVKRSDTSH
Trigger: ATGCGAAGTGTCCGAGCGTTTCACTTTGACAAGGCAGCTGCTAGTGTCCTTACCACCAGTATGGTCACAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CCA 72 bp TCAAAAGGCAAGCTGGTGAGGGACCAGATGACTGGATaGACTTTCTGTGTGATGTTCAGCGAGATAGCCACA +
Preference number: 3 (lower is better)
Translates to: SKGKLVRDQMTG*TFCVMFSEIAT
Trigger: TGTGGCTATCTCGCTGAACATCACACAGAAAGTCCATCCAGTCATCTGGTCCCTCACCAGCTTGCCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR-3UTR CAA 90 bp CTCTTTGGCTTCTGGCAGATACATATACACCATAAGATTGCGGTCTCGGTCAGAGATGGAGAAGGCTTCTaGCTGGGGGTGGATGTATCT +
Preference number: 3 (lower is better)
Translates to: LFGFWQIHIHHKIAVSVRDGEGF*LGVDVS
Trigger: AGATACATCCACCCCCAGCAAGAAGCCTTCTCCATC...TCTGACCGAGACCGCAATCTTATGGTGTATATGTATCTGCCAGAAGCCAAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CAA 72 bp CGCCGGTCTACGTGCAACATTCGGAAGGCGCGGGGGTaGAGGCCAGCGTGGTGGGGTAGCATGGTCGTCAGT +
Preference number: 4 (lower is better)
Translates to: RRSTCNIRKARG*RPAWWGSMVVS
Trigger: ACTGACGACCATGCTACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCGAATGTTGCACGTAGACCGGCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR GCA 90 bp GTGATCCGTACACCCTCTTGGGTACGCAATGGGAAAGCGGTGGTGCCTGTGGTGAGCCCGGTGGGCGGGTaGGCCTGCTTGTACACCGCG +
Preference number: 4 (lower is better)
Translates to: VIRTPSWVRNGKAVVPVVSPVGG*ACLYTA
Trigger: CGCGGTGTACAAGCAGGCGCACCCGCCCACCGGGCT...CACCACAGGCACCACCGCTTTCCCATTGCGTACCCAAGAGGGTGTACGGATCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR TCA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGGAAGGCGCGGGGGTTaGGGCCAGCGTGGTGGGGTA +
Preference number: 4 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRGRRGG*GQRGGV
Trigger: TACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCC...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR TCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGGAAGGCGCGGGGGTTaGGGCCAGCGTGGTGGGGTA +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILGRRGG*GQRGGV
Trigger: TACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCC...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR GCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGCCCGGTGGGCGGGTaGGCCTGCTTGTACACCGCG +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPSPVGG*ACLYTA
Trigger: CGCGGTGTACAAGCAGGCGCACCCGCCCACCGGGCT...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR GCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTTCAGCCACGGCACACTaGACGATGGGGGCGCCCAGG +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPSATAH*TMGAPR
Trigger: CCTGGGCGCCCCCATCGTGCAGTGTGCCGTGGCTGA...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGACCTCACGGACGGAGCTaGCTGGGGGCTCCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRPHGRS*LGAPAA
Trigger: AGCTGCAGGAGCCCCCAGCCAGCTCCGTCCGTGAGG...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
3UTR CAA 72 bp CACGCCTTCCAACAGGCGAATGCCCAGTGGCGAGACTaGAACAATGTAACGATTGTCCCCAATGTTTCCAGC +
Preference number: 4 (lower is better)
Translates to: HAFQQANAQWRD*NNVTIVPNVSS
Trigger: GCTGGAAACATTGGGGACAATCGTTACATTGTTCAAGTCTCGCCACTGGGCATTCGCCTGTTGGAAGGCGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
3UTR CAA 72 bp ATGCCACCGTCAAGGGTTGCAAACCATGTGATATGCTaGTTTTCCCACACGACTGACTTCTTGCTGGGGCCC +
Preference number: 4 (lower is better)
Translates to: MPPSRVANHVIC*FSHTTDFLLGP
Trigger: GGGCCCCAGCAAGAAGTCAGTCGTGTGGGAAAACAAGCATATCACATGGTTTGCAACCCTTGACGGTGGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR TCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGGCAGGCAGGACGCTaGTCCTCAGCTCCCCCTGTC +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPRQAGR*SSAPPV
Trigger: GACAGGGGGAGCTGAGGATCAGCGTCCTGCCTGCCT...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTCAGCCGGTGGCTGGCTaGTCCTACGGGCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPQPVAG*SYGPPL
Trigger: AAGAGGAGGCCCGTAGGAGCAGCCAGCCACCGGCTG...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp CCAACAGGCGAATGCCCAGTGGCGAGACTTGAACAATGTAACGATTGTCCCCAACAGGTCATGAGTGCCTaGGTCATACTCCACCACAGA +
Preference number: 4 (lower is better)
Translates to: PTGECPVARLEQCNDCPQQVMSA*VILHHR
Trigger: TCTGTGGTGGAGTATGACCCAGGCACTCATGACCTG...TTGGGGACAATCGTTACATTGTTCAAGTCTCGCCACTGGGCATTCGCCTGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR CCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTCACAGCCACCCGCCCTaGCCAAGTCTGGTTGGGCTC +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPHSHPP*PSLVGL
Trigger: GAGCCCAACCAGACTTGGCCAGGGCGGGTGGCTGTG...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCGGCACACTGCACGATaGGGGCGCCCAGGTCCACAG +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHRHTAR*GRPGPQ
Trigger: CTGTGGACCTGGGCGCCCCCATCGTGCAGTGTGCCG...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGTGTGGGGCTCGTTTCTaGGCCCAGGCCTTCTGCCTC +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILECGARF*AQAFCL
Trigger: GAGGCAGAAGGCCTGGGCTCAGAAACGAGCCCCACA...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGACATAGAGCTGCGAGGTaGCGGCCACCACGAGGTTGC +
Preference number: 4 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRHRAAR*RPPRGC
Trigger: GCAACCTCGTGGTGGCCGGCACCTCGCAGCTCTATG...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR GCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTCCTGTGGCACCGTCTTaGCTCCTGTCCAGCCCACTG +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPPVAPS*LLSSPL
Trigger: CAGTGGGCTGGACAGGAGGCAAGACGGTGCCACAGG...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAAAGTAGCGGAAACGTaGCACACGGCCCCGGCCTCC +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPKVAET*HTAPAS
Trigger: GGAGGCCGGGGCCGTGTGGCACGTTTCCGCTACTTT...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCACGGACGGAGCTGGCTaGGGGCTCCTGCAGCTTCTC +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSITDGAG*GLLQLL
Trigger: GAGAAGCTGCAGGAGCCCCCAGCCAGCTCCGTCCGT...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGACGACTGACTTCTTGCTaGGGCCCTCGGCAGCACCTC +
Preference number: 4 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRRLTSC*GPRQHL
Trigger: GAGGTGCTGCCGAGGGCCCCAGCAAGAAGTCAGTCG...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
3UTR CAA 72 bp GATCCCTCCTCAGTGCTGCAACCTTCGGCCTTCTTCTaGGACGGCTTTGGCTTCTTTTCACGGAAGTTGATA +
Preference number: 4 (lower is better)
Translates to: DPSSVLQPSAFF*DGFGFFSRKLI
Trigger: TATCAACTTCCGTGAAAAGAAGCCAAAGCCGTCCAAGAAGAAGGCCGAAGGTTGCAGCACTGAGGAGGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR TCA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGCCTCGTGCCATAGATaGGCATTGCTGCACAGCGCC +
Preference number: 4 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRASCHR*ALLHSA
Trigger: GGCGCTGTGCAGCAATGCTCATCTATGGCACGAGGC...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGTCTGCCCTTCGCCCATaGGCCCCTCATGTTCCTCAG +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILESALRP*APHVPQ
Trigger: CTGAGGAACATGAGGGGCTCATGGGCGAAGGGCAGA...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGGTGCGCAGTCTAGGGTaGTCCGTACACCCTCTTGGG +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILEVRSLG*SVHPLG
Trigger: CCCAAGAGGGTGTACGGATCACCCTAGACTGCGCAC...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGCCTCTTTGCTGGGACTaGAGAGGGCACTGGAGTCCC +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILEPLCWD*RGHWSP
Trigger: GGGACTCCAGTGCCCTCTTCAGTCCCAGCAAAGAGG...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCATAGAGCTGCGAGGTaGCGGCCACCACGAGGTTGC +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSIHRAAR*RPPRGC
Trigger: GCAACCTCGTGGTGGCCGGCACCTCGCAGCTCTATG...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR GCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGTTCTTGGTCAGGGGCTaGCCAGGCTCAGGCACCACT +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILEFLVRG*PGSGTT
Trigger: AGTGGTGCCTGAGCCTGGGCAGCCCCTGACCAAGAA...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTTCACTACCCCACCTATaGGCTTGGGCACAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPSLPHL*AWAQPG
Trigger: CCCTGGCTGTGCCCAAGCCCATAGGTGGGGTAGTGA...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGCTGCTTTCGGGGCACTaGGCTCCTGCTCTGTGCTCT +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILELLSGH*APALCS
Trigger: AGAGCACAGAGCAGGAGCCCAGTGCCCCGAAAGCAG...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCGGGTTGAGGCCAGCGTaGTGGGGTAGCATGGTCGTC +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSGLRPA*WGSMVV
Trigger: GACGACCATGCTACCCCACCACGCTGGCCTCAACCC...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCGGGTTGAGGCCAGCGTaGTGGGGTAGCATGGTCGTC +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSIGLRPA*WGSMVV
Trigger: GACGACCATGCTACCCCACCACGCTGGCCTCAACCC...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR GCA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGATTGGCGCCTGCAAGCTaGACACTGGCCATGGACATG +
Preference number: 4 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRLAPAS*TLAMDM
Trigger: CATGTCCATGGCCAGTGTGCAGCTTGCAGGCGCCAA...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTGGCTGGGGGCTCCTaGAGCTTCTCCGTGTACTTG +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSILAGGS*SFSVYL
Trigger: CAAGTACACGGAGAAGCTGCAGGAGCCCCCAGCCAG...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTTCCTGTCCAGCCCACTaGAGGCTCCACTCGCTTCTT +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPSCPAH*RLHSLL
Trigger: AAGAAGCGAGTGGAGCCTGCAGTGGGCTGGACAGGA...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCGTCTGCCTTGAAGGGTaGAGGGTCACGATCAGCCGG +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSVCLEG*RVTISR
Trigger: CCGGCTGATCGTGACCCTGCACCCTTCAAGGCAGAC...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCCATGGAAATCCGCTCTaGGTAGCAGGCGCATGCCCC +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSHGNPL*VAGACP
Trigger: GGGGCATGCGCCTGCTACGCAGAGCGGATTTCCATG...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGGCACAGCCAGGGCCTaGGTACAGTCAAAAGGCAAG +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILGTARA*VQSKGK
Trigger: CTTGCCTTTTGACTGTACCCAGGCCCTGGCTGTGCC...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGACCTCTAGCTCGATCCTaGCATTGGGAATGGCCTCCC +
Preference number: 4 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRPLARS*HWEWPP
Trigger: GGGAGGCCATTCCCAATGCCAGGATCGAGCTAGAGG...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGGGTCTTCAGGTCATaGGTGCCTGGGTCATACTCC +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPRVFRS*VPGSYS
Trigger: GGAGTATGACCCAGGCACTCATGACCTGAAGACCCT...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTGCTGCCTTGTCAAAGTaGAACGCTCGGACACTTCGC +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPAALSK*NARTLR
Trigger: GCGAAGTGTCCGAGCGTTTCACTTTGACAAGGCAGC...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTACTCTTCTGCAACACTaGCAGGGCCCCATTCTTCCC +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPTLLQH*QGPILP
Trigger: GGGAAGAATGGGGCCCTGTCAGTGTTGCAGAAGAGT...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATGCTCCCCCTGTCTGTTaGAGTACAGGAAACCACGGG +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHAPPVC*STGNHG
Trigger: CCCGTGGTTTCCTGTACTTCAACAGACAGGGGGAGC...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGATCACGTTTGGCGCCTaGAAGCTGCACACTGGCCAT +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILEITFGA*KLHTGH
Trigger: ATGGCCAGTGTGCAGCTTGCAGGCGCCAAACGTGAT...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGACGCACACGAGGCGTATaGACGTTCTGCACAAACCCA +
Preference number: 4 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRRTRGV*TFCTNP
Trigger: TGGGTTTGTGCAGAACGTGCATACGCCTCGTGTGCG...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGATAGATGAGCATTGCTaGACAGCGCCCGTCAGGGTC +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILEIDEHC*TAPVRV
Trigger: GACCCTGACGGGCGCTGTGCAGCAATGCTCATCTAT...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGCAGCCAGGCTCTCTCTaGGGAAAGGCAGAACTACCA +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILEQPGSL*GKAELP
Trigger: TGGTAGTTCTGCCTTTCCGCAGAGAGAGCCTGGCTG...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTGGTAGATCTCCATGGTaGCATTCTCCCGCACCAGCA +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPGRSPW*HSPAPA
Trigger: TGCTGGTGCGGGAGAATGGCACCATGGAGATCTACC...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGCCACATAGTGGGCTGTaGATCGGAGTGGGATCTTCC +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILEPHSGL*IGVGSS
Trigger: GGAAGATCCCACTCCGATGCACAGCCCACTATGTGG...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTATTGCGCACAGCATTCTaGAAGATGCGCCGGTCTACG +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILLRTAF*KMRRST
Trigger: CGTAGACCGGCGCATCTTGCAGAATGCTGTGCGCAA...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTACGCCCTGGCCAAGTCTaGTTGGGCTCAAACAGGATA +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILRPGQV*LGSNRI
Trigger: TATCCTGTTTGAGCCCAACCAGACTTGGCCAGGGCG...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCGCTCCCCCTGGCGTGTaGCTTCTTCCTTTCGGACTT +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSAPPGV*LLPFGL
Trigger: AAGTCCGAAAGGAAGAAGCCACACGCCAGGGGGAGC...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAAAGGCAGCTCCCCCTaGCGTGTGGCTTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPKGSSP*RVASSF
Trigger: AAAGGAAGAAGCCACACGCCAGGGGGAGCTGCCTTT...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTACTCGCCAGTCATGCGTaGGATCCTAGTGCAAGGTGT +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILLASHA*DPSARC
Trigger: ACACCTTGCACTAGGATCCCACGCATGACTGGCGAG...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATACGTGGGCACCCACATaGAAATCCGCTCTGCGTAGC +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHTWAPT*KSALRS
Trigger: GCTACGCAGAGCGGATTTCCATGTGGGTGCCCACGT...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTGAGCCCGTACATCAATaGTGTAGCTGGGCAAGAAGC +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPEPVHQ*CSWARS
Trigger: GCTTCTTGCCCAGCTACATCATTGATGTACGGGCTC...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATGCTTCTCCGTGTACTTaGGGAGGAGGGAATTGCCCA +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHASPCT*GGGNCP
Trigger: TGGGCAATTCCCTCCTCCTCAAGTACACGGAGAAGC...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTCCAGGTCCACAGGGATaGAGTGCAATTGATTCACGC +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPPGPQG*SAIDSR
Trigger: GCGTGAATCAATTGCACTTCATCCCTGTGGACCTGG...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCAGTGGGCTGTCCAAATaGACTGTCCACCAGAACCCG +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSSGLSK*TVHQNP
Trigger: CGGGTTCTGGTGGACAGTTCATTTGGACAGCCCACT...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATTTTCCCTGGCCAAGCTaGGAGTCATGGGGAAAGGCT +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHFPWPS*ESWGKA
Trigger: AGCCTTTCCCCATGACTCTCAGCTTGGCCAGGGAAA...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGTGAGGGTCCACAGATaGAAACCCCCGAATAGCCAT +
Preference number: 4 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRVRVHR*KPPNSH
Trigger: ATGGCTATTCGGGGGTTTTCATCTGTGGACCCTCAC...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATTGGGCTCCTGCTCTGTaGTCTCTGCTTTGGGGGTTT +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHWAPAL*SLLWGF
Trigger: AAACCCCCAAAGCAGAGAGCACAGAGCAGGAGCCCA...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCGTCGTCAGTGCATTCTaGAGCATCAGCAAGCGTCGG +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSVVSAF*SISKRR
Trigger: CCGACGCTTGCTGATGCTGCAGAATGCACTGACGAC...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR GCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATTTGCGCACAGCATTCTaGAAGATGCGCCGGTCTACG +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHLRTAF*KMRRST
Trigger: CGTAGACCGGCGCATCTTGCAGAATGCTGTGCGCAA...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCCCTCATCATCCACTGTaGGGCTCGTTTCTGAGCCCA +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSPHHPL*GSFLSP
Trigger: TGGGCTCAGAAACGAGCCCCACAGTGGATGATGAGG...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGAAGGCTTCTTGCTaGGGGTGGATGTATCTGTCG +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILEKASC*GWMYLS
Trigger: CGACAGATACATCCACCCCCAGCAAGAAGCCTTCTC...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGTGGTACCTATCTTCTTaGCCAGCTCACTGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILEWYLSS*PAHCAP
Trigger: TGGAGCGCAGTGAGCTGGCCAAGAAGATAGGTACCA...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR TCA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCAGGAGCCAGTGAGGTaGGGGTCCACAGATGAAAAC +
Preference number: 4 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQQEPVR*GSTDEN
Trigger: GTTTTCATCTGTGGACCCTCACCTCACTGGCTCCTG...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCTCCTCACTGCGCAGTaGCACTGTCTTCATGCACGT +
Preference number: 4 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQLLTAQ*HCLHAR
Trigger: ACGTGCATGAAGACAGTGTCACTGCGCAGTGAGGAG...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTATTGGTAACGCAGCAGTaGGATGCTCTTCATGACGTC +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILLVTQQ*DALHDV
Trigger: GACGTCATGAAGAGCATCTCACTGCTGCGTTACCAA...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCACACGGTCTCCTCACTaGGCAGTGACACTGTCTTCA +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSTRSPH*AVTLSS
Trigger: TGAAGACAGTGTCACTGCGCAGTGAGGAGACCGTGT...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCGGTATGTCTTTTCTTaGATGGGCAGCAGGAGCCCA +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHRYVFS*MGSRSP
Trigger: TGGGCTCCTGCTGCCCATGCAAGAAAAGACATACCG...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR GCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGGCAAGCTGCACACTGTaGTCCCATCATTCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILEASCTL*SHHSWS
Trigger: TGACCAAGAATGATGGGAGCACAGTGTGCAGCTTGC...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR GCA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGTTGGCGCCTGCAAGCTaGACACTGTGCTCCCATCAT +
Preference number: 4 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQLAPAS*TLCSHH
Trigger: ATGATGGGAGCACAGTGTGCAGCTTGCAGGCGCCAA...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR CCA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGTCTAGTTTCTCTCGGTaGGCCTTCCCCTCTGTGCTC +
Preference number: 4 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQSSFSR*AFPSVL
Trigger: GAGCACAGAGGGGAAGGCCCACCGAGAGAAACTAGA...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTCTGTGCTCTCTGCTTTaGGGGTTTCTTCCTCCTCTT +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPLCSLL*GFLPPL
Trigger: AAGAGGAGGAAGAAACCCCCAAAGCAGAGAGCACAG...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGAGCTCCATGATCTCCTaGCCAGTCTGTAGGATCATG +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILESSMIS*PVCRIM
Trigger: CATGATCCTACAGACTGGCCAGGAGATCATGGAGCT...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATGAGCAAAGGAGTCAATaGGGCCATCAATGCCCATGG +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHEQRSQ*GHQCPW
Trigger: CCATGGGCATTGATGGCCCCATTGACTCCTTTGCTC...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTACCACAGCATAGACCTTaGATTCCACATGGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILPQHRP*IPHGRP
Trigger: TGGCCTACCATGTGGAATCCAAGGTCTATGCTGTGG...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTACAGAACGTATTCACGTaGGCACCCACATGGAAATCC +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILQNVFT*APTWKS
Trigger: GGATTTCCATGTGGGTGCCCACGTGAATACGTTCTG...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCTGGTACCTATCTTCTTaGCCAGCTCACTGCGCTCCA +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSIWYLSS*PAHCAP
Trigger: TGGAGCGCAGTGAGCTGGCCAAGAAGATAGGTACCA...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR TCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTTGCGCTCACTGTTGTTaGAGAAGTTGCAGTACATGG +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPCAHCC*RSCSTW
Trigger: CCATGTACTGCAACTTCTTCAACAACAGTGAGCGCA...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR TCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTGTCTTCATGCACGTaGCATGCTCCCATTCCTCTA +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSILSSCT*HAPIPL
Trigger: TAGAGGAATGGGAGCATGTCACGTGCATGAAGACAG...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATTCTTCAGGTCATGAGTaGCTGGGTCATACTCCACCA +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHSSGHE*LGHTPP
Trigger: TGGTGGAGTATGACCCAGGCACTCATGACCTGAAGA...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATGGAGAAGGCTTCTTaGTGGGGGTGGATGTATCTG +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSMEKAS*WGWMYL
Trigger: CAGATACATCCACCCCCAGCAAGAAGCCTTCTCCAT...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCGGTATGTCTTTTCTTaGATGGGCAGCAGGAGCCCA +
Preference number: 4 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQRYVFS*MGSRSP
Trigger: TGGGCTCCTGCTGCCCATGCAAGAAAAGACATACCG...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CCA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCAGGTCATGAGTGCCTaGGTCATACTCCACCACAGA +
Preference number: 4 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQQVMSA*VILHHR
Trigger: TCTGTGGTGGAGTATGACCCAGGCACTCATGACCTG...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR CCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCGGCTCAGGGCTATTCTaGAACTCTTCAGAGAGGAAG +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSGSGLF*NSSERK
Trigger: CTTCCTCTCTGAAGAGTTCCAGAATAGCCCTGAGCC...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTGGGCAGTTCACATTGTaGAAAGGAGCAAAGGAGTCA +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPGQFTL*KGAKES
Trigger: TGACTCCTTTGCTCCTTTCCACAATGTGAACTGCCC...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCACCAAGAAGCCCAGTTaGGCATTGTCCACCATGAAG +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSITKKPS*ALSTMK
Trigger: CTTCATGGTGGACAATGCCCAACTGGGCTTCTTGGT...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATGTCTTTTCTTGCATaGGCAGCAGGAGCCCAATGC +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSMSFLA*AAGAQC
Trigger: GCATTGGGCTCCTGCTGCCCATGCAAGAAAAGACAT...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCATGTCTTTTCTTGCATaGGCAGCAGGAGCCCAATGC +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSIMSFLA*AAGAQC
Trigger: GCATTGGGCTCCTGCTGCCCATGCAAGAAAAGACAT...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR TCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATTGCGCTCACTGTTGTTaGAGAAGTTGCAGTACATGG +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHCAHCC*RSCSTW
Trigger: CCATGTACTGCAACTTCTTCAACAACAGTGAGCGCA...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR GCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCGCCACCGTCAAGGGTTaGTTCTGGCAGATACATATA +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSATVKG*FWQIHI
Trigger: TATATGTATCTGCCAGAAGCAACCCTTGACGGTGGC...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229287.2
CDS-3UTR CCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCGAGGGACCAGATGACTaGATGGACTTTCTGTGTGAT +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSIEGPDD*MDFLCD
Trigger: ATCACACAGAAAGTCCATCCAGTCATCTGGTCCCTC...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCCTTCGGCCTTCTTCTTaGACGGCTTTGGCTTCTTTT +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSLRPSS*TALASF
Trigger: AAAAGAAGCCAAAGCCGTCCAAGAAGAAGGCCGAAG...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCCGGAAGTTGATATTGTaGGGGACCTTTTTGAAACGG +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSRKLIL*GTFLKR
Trigger: CCGTTTCAAAAAGGTCCCTCACAATATCAACTTCCG...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCTCTCATACAGGACCTTaGATTTGTTCTTGGTCAGGG +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSSHTGP*ICSWSG
Trigger: CCCTGACCAAGAACAAATTCAAGGTCCTGTATGAGA...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGCTGACTGGGCCTCACTaGCATAAACTTCAATTTCAT +
Preference number: 4 (lower is better)
Translates to: FYTKWVEGSVQHQSSILELTGPH*HKLQFH
Trigger: ATGAAATTGAAGTTTATGGCAGTGAGGCCCAGTCAG...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR GCA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGCAAACCATGTGATATaGTTGTTTTCCCACACGACT +
Preference number: 4 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILANHVI*LFSHTT
Trigger: AGTCGTGTGGGAAAACAAGCATATCACATGGTTTGC...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCGACCAGATGACTGGATaGACTTTCTGTGTGATGTTC +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSDQMTG*TFCVMF
Trigger: GAACATCACACAGAAAGTCCATCCAGTCATCTGGTC...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGTATGGGGGAACACTCTaGTTCAGGTACAACAGTGAG +
Preference number: 4 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQYGGTL*FRYNSE
Trigger: CTCACTGTTGTACCTGAACCAGAGTGTTCCCCCATA...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR TCA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTTCTTTTCACGGAAGTTaGTATTGTGAGGGACCTTTT +
Preference number: 4 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPSFHGS*YCEGPF
Trigger: AAAAGGTCCCTCACAATATCAACTTCCGTGAAAAGA...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCTTCTTGGACGGCTTTaGCTTCTTTTCACGGAAGTT +
Preference number: 4 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQLLGRL*LLFTEV
Trigger: AACTTCCGTGAAAAGAAGCCAAAGCCGTCCAAGAAG...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCTGTCGTCTCTCTCAATaGCCTCGAATTCTTTTTCCT +
Preference number: 4 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSICRLSQ*PRILFP
Trigger: AGGAAAAAGAATTCGAGGCCATTGAGAGAGACGACA...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CCA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCGTCAAGGGTTGCTTCTaGCAGATACATATACACCAT +
Preference number: 4 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSVKGCF*QIHIHH
Trigger: ATGGTGTATATGTATCTGCCAGAAGCAACCCTTGAC...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229287.2
CDS-3UTR CCA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATACTCTCTTTGGCTTCTaGCAGATACATATACACCAT +
Preference number: 4 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHTLFGF*QIHIHH
Trigger: ATGGTGTATATGTATCTGCCAGAAGCCAAAGAGAGT...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS CCA 90 bp TCACGTTTGGCGCCTGCAAGCTGCACACTGTGCTCCCATCATTCTTaGTCAGAGCCTCGGCGTCGCGGTTCAGGCGGTACACATAGAGCT +
Preference number: 5 (lower is better)
Translates to: SRLAPASCTLCSHHS*SEPRRRGSGGTHRA
Trigger: AGCTCTATGTGTACCGCCTGAACCGCGACGCCGAGGCTCTGACCAAGAATGATGGGAGCACAGTGTGCAGCTTGCAGGCGCCAAACGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS GCA 90 bp TCTTTGAAACTGAGAAGCAAGGCATCACGTTTGGCGCCTGCAAGCTaGACACTGTGCTCCCATCATTCTTGGTCAGAGCCTCGGCGTCGC +
Preference number: 5 (lower is better)
Translates to: SLKLRSKASRLAPAS*TLCSHHSWSEPRRR
Trigger: GCGACGCCGAGGCTCTGACCAAGAATGATGGGAGCACAGTGTGCAGCTTGCAGGCGCCAAACGTGATGCCTTGCTTCTCAGTTTCAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR CAA 90 bp GGGTCCACCCGCACACGAGGCGTATGCACGTTCTGCACAAACCCATCCCGAAGTAGGTTGCGCTCACTGTaGTTGAAGAAGTTGCAGTAC +
Preference number: 5 (lower is better)
Translates to: GSTRTRGVCTFCTNPSRSRLRSL*LKKLQY
Trigger: GTACTGCAACTTCTTCAACAACAGTGAGCGCAACCT...ACTTCGGGATGGGTTTGTGCAGAACGTGCATACGCCTCGTGTGCGGGTGGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR CAA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGCGGAAGGCGCGGGGGTaGAGGCCAGCGTGGTGGGGT +
Preference number: 5 (lower is better)
Translates to: FYTKWVEGSVQHQSSILERKARG*RPAWWG
Trigger: ACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCG...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CAA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCCGGAAGGCGCGGGGGTaGAGGCCAGCGTGGTGGGGT +
Preference number: 5 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSRKARG*RPAWWG
Trigger: ACCCCACCACGCTGGCCTCAACCCCCGCGCCTTCCG...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS GCA 90 bp CTTAGCGTCTTTGAAACTGAGAAGCAAGGCATCACGTTTGGCGCCTaGAAGCTGCACACTGTGCTCCCATCATTCTTGGTCAGAGCCTCG +
Preference number: 5 (lower is better)
Translates to: LSVFETEKQGITFGA*KLHTVLPSFLVRAS
Trigger: CGAGGCTCTGACCAAGAATGATGGGAGCACAGTGTGCAGCTTGCAGGCGCCAAACGTGATGCCTTGCTTCTCAGTTTCAAAGACGCTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS TCA 90 bp AAGTGTACAACACCAGAGCAGCATCCTAGAGTTAGAAGTGAGCCGTaGCCCGGTAATGTCAGGCGTGGTACCTATCTTCTTGGCCAGCTC +
Preference number: 5 (lower is better)
Translates to: KCTTPEQHPRVRSEP*PGNVRRGTYLLGQL
Trigger: GAGCTGGCCAAGAAGATAGGTACCACGCCTGACATTACCGGGTCACGGCTCACTTCTAACTCTAGGATGCTGCTCTGGTGTTGTACACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230157.2
CDS-3UTR CAA 90 bp CTCTTTGGCTTCTGGCAGATACATATACACCATAAGATTGCGGTCTCGGTCAGAGTGCTCCCATCATTCTaGGTCAGAGCCTCGGCGTCG +
Preference number: 5 (lower is better)
Translates to: LFGFWQIHIHHKIAVSVRVLPSF*VRASAS
Trigger: CGACGCCGAGGCTCTGACCAAGAATGATGGGAGCAC...TCTGACCGAGACCGCAATCTTATGGTGTATATGTATCTGCCAGAAGCCAAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR CAA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTCCGGCCACCACGAGGTaGCGCTCACTGTTGTTGAAG +
Preference number: 5 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPPATTR*RSLLLK
Trigger: CTTCAACAACAGTGAGCGCAACCTCGTGGTGGCCGG...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR CAA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGAGCTCGATCCTGGCATaGGGAATGGCCTCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: FYTKWVEGSVQHQSSILESSILA*GMASQL
Trigger: CAGCTGGGAGGCCATTCCCAATGCCAGGATCGAGCT...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGTGGTACCTATCTTCTaGGCCAGCTCACTGCGCTCC +
Preference number: 5 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILVVPIF*ASSLRS
Trigger: GGAGCGCAGTGAGCTGGCCAAGAAGATAGGTACCAC...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CAA 90 bp CAGGCGAATGCCCAGTGGCGAGACTTGAACAATGTAACGATTGTCCCCAATGTTTTGCGCTCACTGTTGTaGAAGAAGTTGCAGTACATG +
Preference number: 5 (lower is better)
Translates to: QANAQWRDLNNVTIVPNVLRSLL*KKLQYM
Trigger: CATGTACTGCAACTTCTTCAACAACAGTGAGCGCAA...AACATTGGGGACAATCGTTACATTGTTCAAGTCTCGCCACTGGGCATTCGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS-3UTR CAA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGGTGCTCCCATCATTCTaGGTCAGAGCCTCGGCGTCG +
Preference number: 5 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQVLPSF*VRASAS
Trigger: CGACGCCGAGGCTCTGACCAAGAATGATGGGAGCAC...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR CAA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGAGCTTCTCCGTGTACTaGAGGAGGAGGGAATTGCCC +
Preference number: 5 (lower is better)
Translates to: FYTKWVEGSVQHQSSILESFSVY*RRRELP
Trigger: GGGCAATTCCCTCCTCCTCAAGTACACGGAGAAGCT...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTGGCCAAGTCTGGTaGGGCTCAAACAGGATAAGC +
Preference number: 5 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHPGQVW*GSNRIS
Trigger: GCTTATCCTGTTTGAGCCCAACCAGACTTGGCCAGG...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTCCACAGGAAGATTTTTaGGCCAATGGCCGACACCAG +
Preference number: 5 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPPQEDF*ANGRHQ
Trigger: CTGGTGTCGGCCATTGGCCAAAAAATCTTCCTGTGG...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATTCGGTATGTCTTTTCTaGCATGGGCAGCAGGAGCCC +
Preference number: 5 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHSVCLF*HGQQEP
Trigger: GGGCTCCTGCTGCCCATGCAAGAAAAGACATACCGA...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CAA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCTCGGTATGTCTTTTCTaGCATGGGCAGCAGGAGCCC +
Preference number: 5 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSISVCLF*HGQQEP
Trigger: GGGCTCCTGCTGCCCATGCAAGAAAAGACATACCGA...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CAA 90 bp TTTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGGTGGTACCTATCTTCTaGGCCAGCTCACTGCGCTCC +
Preference number: 5 (lower is better)
Translates to: FLCVLYKMGRGKCTTPEQVVPIF*ASSLRS
Trigger: GGAGCGCAGTGAGCTGGCCAAGAAGATAGGTACCAC...CTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000229287.2
CDS-3UTR CAA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCTCTGTGCTCTCTGCTTaGGGGGTTTCTTCCTCCTCT +
Preference number: 5 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSISVLSA*GVSSSS
Trigger: AGAGGAGGAAGAAACCCCCAAAGCAGAGAGCACAGA...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGACTTTCGGACTTCACCTaGTGTAGTGGGCTGTCCAAA +
Preference number: 5 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRLSDFT*CSGLSK
Trigger: TTTGGACAGCCCACTACACAAGGTGAAGTCCGAAAG...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTTCGGCCTTCTTCTaGGACGGCTTTGGCTTCTTT +
Preference number: 5 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHPSAFF*DGFGFF
Trigger: AAAGAAGCCAAAGCCGTCCAAGAAGAAGGCCGAAGG...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGTGCAAGGTGTGTaGGTACTAGTGGCCACAGCA +
Preference number: 5 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSILVQGV*VLVATA
Trigger: TGCTGTGGCCACTAGTACCAACACACCTTGCACTAG...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp TTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCGATGGAGAAGGCTTCTaGCTGGGGGTGGATGTATCT +
Preference number: 5 (lower is better)
Translates to: FVFYTKWVEGSVQHQSSIDGEGF*LGVDVS
Trigger: AGATACATCCACCCCCAGCAAGAAGCCTTCTCCATC...GATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp CTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCACCAAGAAGCCCAGTaGGGCATTGTCCACCATGAA +
Preference number: 5 (lower is better)
Translates to: LCVLYKMGRGKCTTPEQHHQEAQ*GIVHHE
Trigger: TTCATGGTGGACAATGCCCAACTGGGCTTCTTGGTG...ATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp GTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAAGGTTGCGCTCACTGTaGTTGAAGAAGTTGCAGTAC +
Preference number: 5 (lower is better)
Translates to: VLYKMGRGKCTTPEQHPRRLRSL*LKKLQY
Trigger: GTACTGCAACTTCTTCAACAACAGTGAGCGCAACCT...TCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR CAA 90 bp TTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAGAGAGGGATGAAGTGCAATaGATTCACGCCTTCCAACAG +
Preference number: 5 (lower is better)
Translates to: FYTKWVEGSVQHQSSILERDEVQ*IHAFQQ
Trigger: CTGTTGGAAGGCGTGAATCAATTGCACTTCATCCCT...CTCTAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTACCCCCAAAACTCTCTTaGGCTTCTGGCAGATACATA +
Preference number: 5 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILPPKLS*ASGRYI
Trigger: TATGTATCTGCCAGAAGCCAAAGAGAGTTTTGGGGG...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCTGCCACCGTCAAGGGTaGCTTCTGGCAGATACATAT +
Preference number: 5 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSCHRQG*LLADTY
Trigger: ATATGTATCTGCCAGAAGCAACCCTTGACGGTGGCA...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000229287.2
CDS-3UTR CAA 90 bp TGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTTTGCGCTCACTGTTGTaGAAGAAGTTGCAGTACATG +
Preference number: 5 (lower is better)
Translates to: CVLYKMGRGKCTTPEQHPLRSLL*KKLQYM
Trigger: CATGTACTGCAACTTCTTCAACAACAGTGAGCGCAA...AGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000231042.2
CDS-3UTR CAA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATATACACCATAAGATaGCGGTCTCGGTCAGACACC +
Preference number: 5 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSIYTIR*RSRSDT
Trigger: GGTGTCTGACCGAGACCGCAATCTTATGGTGTATAT...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp GTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCATCCTAAACCATGTGATATGCTaGTTTTCCCACACGACTGAC +
Preference number: 5 (lower is better)
Translates to: VFYTKWVEGSVQHQSSILNHVIC*FSHTTD
Trigger: GTCAGTCGTGTGGGAAAACAAGCATATCACATGGTT...TAGGATGCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS-3UTR CAA 90 bp TTCTTTGTGTTTTATACAAAATGGGTAGAGGGAAGTGTACAACACCAGAGCAGCTGCAGGTCAATGATGTaGAGTAGTTTCTCATCCAGA +
Preference number: 5 (lower is better)
Translates to: FFVFYTKWVEGSVQHQSSCRSMM*SSFSSR
Trigger: TCTGGATGAGAAACTACTCAACATCATTGACCTGCA...GCTGCTCTGGTGTTGTACACTTCCCTCTACCCATTTTGTATAAAACACAAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071898.7
CDS CCA 72 bp CTCGGTGGGCCTTCCCCTCTGTGCTCCCATCATTCTTaGTCAGAGCCTCGGCGTCGCGGTTCAGGCGGTACA +
Preference number: 6 (lower is better)
Translates to: LGGPSPLCSHHS*SEPRRRGSGGT
Trigger: TGTACCGCCTGAACCGCGACGCCGAGGCTCTGACCAAGAATGATGGGAGCACAGAGGGGAAGGCCCACCGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000230157.2
CDS CAA 90 bp GAGGTGCCGGCCACCACGAGGTTGCGCTCACTGTTGTTGAAGAAGTaGCAGTACATGGTAAACTCCAGCCCGGTGGGCGGGTGCGCCTGC +
Preference number: 6 (lower is better)
Translates to: EVPATTRLRSLLLKK*QYMVNSSPVGGCAC
Trigger: GCAGGCGCACCCGCCCACCGGGCTGGAGTTTACCATGTACTGCAACTTCTTCAACAACAGTGAGCGCAACCTCGTGGTGGCCGGCACCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071898.7
ENSMUST00000230157.2
ENSMUST00000231042.2
CDS CCA 72 bp GCGCCTGCAAGCTGCACACTGTGCTCCCATCATTCTTaGTCAGAGCCTCGGCGTCGCGGTTCAGGCGGTACA +
Preference number: 6 (lower is better)
Translates to: APASCTLCSHHS*SEPRRRGSGGT
Trigger: TGTACCGCCTGAACCGCGACGCCGAGGCTCTGACCAAGAATGATGGGAGCACAGTGTGCAGCTTGCAGGCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS CAA 72 bp GCCACCACGAGGTTGCGCTCACTGTTGTTGAAGAAGTaGCAGTACATGGTAAACTCCAGCCCGGTGGGCGGG +
Preference number: 6 (lower is better)
Translates to: ATTRLRSLLLKK*QYMVNSSPVGG
Trigger: CCCGCCCACCGGGCTGGAGTTTACCATGTACTGCAACTTCTTCAACAACAGTGAGCGCAACCTCGTGGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071898.7
ENSMUST00000230157.2
ENSMUST00000231042.2
CDS CAA 72 bp GAGGTGCCGGCCACCACGAGGTTGCGCTCACTGTTGTaGAAGAAGTTGCAGTACATGGTAAACTCCAGCCCG +
Preference number: 6 (lower is better)
Translates to: EVPATTRLRSLL*KKLQYMVNSSP
Trigger: CGGGCTGGAGTTTACCATGTACTGCAACTTCTTCAACAACAGTGAGCGCAACCTCGTGGTGGCCGGCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071898.7
ENSMUST00000230157.2
ENSMUST00000231042.2
CDS GCA 72 bp CTGAGAAGCAAGGCATCACGTTTGGCGCCTGCAAGCTaGACACTGTGCTCCCATCATTCTTGGTCAGAGCCT +
Preference number: 6 (lower is better)
Translates to: LRSKASRLAPAS*TLCSHHSWSEP
Trigger: AGGCTCTGACCAAGAATGATGGGAGCACAGTGTGCAGCTTGCAGGCGCCAAACGTGATGCCTTGCTTCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231042.2
CDS GCA 72 bp TTTGAAACTGAGAAGCAAGGCATCACGTTTGGCGCCTaGAAGCTGCACACTGGCCATGGACATGACATTGCC +
Preference number: 6 (lower is better)
Translates to: FETEKQGITFGA*KLHTGHGHDIA
Trigger: GGCAATGTCATGTCCATGGCCAGTGTGCAGCTTGCAGGCGCCAAACGTGATGCCTTGCTTCTCAGTTTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000230157.2
CDS CCA 72 bp CAGCAGGAGCCCAATGCCACCGTCAAGGGTTGCTTCTaGCAGATACATATACACCATAAGATTGCGGTCTCG +
Preference number: 6 (lower is better)
Translates to: QQEPNATVKGCF*QIHIHHKIAVS
Trigger: CGAGACCGCAATCTTATGGTGTATATGTATCTGCCAGAAGCAACCCTTGACGGTGGCATTGGGCTCCTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000229287.2
CDS CAA 72 bp TTAGCGTCTTTGAAACTGAGAAGCAAGGCATCACGTTaGGCGCCTGCAAGCTGCACACTGGCCATGGACATG +
Preference number: 6 (lower is better)
Translates to: LASLKLRSKASR*APASCTLAMDM
Trigger: CATGTCCATGGCCAGTGTGCAGCTTGCAGGCGCCAAACGTGATGCCTTGCTTCTCAGTTTCAAAGACGCTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000230157.2
CDS CAA 90 bp ACAGACAGCTTAGCGTCTTTGAAACTGAGAAGCAAGGCATCACGTTaGGCGCCTGCAAGCTGCACACTGGCCATGGACATGACATTGCCA +
Preference number: 6 (lower is better)
Translates to: TDSLASLKLRSKASR*APASCTLAMDMTLP
Trigger: TGGCAATGTCATGTCCATGGCCAGTGTGCAGCTTGCAGGCGCCAAACGTGATGCCTTGCTTCTCAGTTTCAAAGACGCTAAGCTGTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071898.7
ENSMUST00000230157.2