Pregenerated sensors for CPQ (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039007Ensembl transcript IDs: ENSMUST00000042167.10, ENSMUST00000226483.2, ENSMUST00000228737.2, ENSMUST00000228916.2
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACAGAGTAAAGATTCAGAGTTaGGATTCCCAACTACAGAGA | + |
|
Preference number: 2 (lower is better) Translates to: KQHFQGGAVGIMIYSRNRVKIQS*DSQLQR Trigger: TCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTAC...TCTGTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| 3UTR CCA 72 bp | TCTTTTGTGACGATGGATGTTGTAAAGATTCAGAGTTaGGATTCCCAACTACAGAGAACAAGGTCCTCTCTT | + |
|
Preference number: 3 (lower is better) Translates to: SFVTMDVVKIQS*DSQLQRTRSSL Trigger: AAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCCATCGTCACAAAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | GGATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTGCTGTGATGCCTCCTaGGGGAGTCCCAATGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: GCCKDSELGFPTTENKVLCCDAS*GSPNAA Trigger: AGCAGCATTGGGACTCCCCCAGGAGGCATCACAGCA...GAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | AGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTGCTGTGATGCCTCCTaGGGGAGTCCCAATGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: RFRVGIPNYREQGPLFLFCCDAS*GSPNAA Trigger: AGCAGCATTGGGACTCCCCCAGGAGGCATCACAGCA...GAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | GGATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCCCCAGTGGGGTATTCTaGCCTGCTCCAGGTGAACAT | + |
|
Preference number: 4 (lower is better) Translates to: GCCKDSELGFPTTENKVLPSGVF*PAPGEH Trigger: ATGTTCACCTGGAGCAGGTCAGAATACCCCACTGGG...GAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTCATCCAGTGCACCCTaGCCAACATCCCAGCTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: CKDSELGFPTTENKVLSSSSSAP*PTSQLS Trigger: GGACAGCTGGGATGTTGGGCAGGGTGCACTGGATGA...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTTCATCCAGTGCACCCTaGCCAACATCCCAGCTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSSSSAP*PTSQLS Trigger: GGACAGCTGGGATGTTGGGCAGGGTGCACTGGATGA...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | ATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCTCCTCCTTGTTCTTCTaGAGTCCAGAGCACCAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: IQSWDSQLQRTRSSLLVLSSLFF*SPEHQA Trigger: CGCCTGGTGCTCTGGACTGCAGAAGAACAAGGAGGA...GAGAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTCTCCCCTCTCCCAGTaGGGTATTCTGACCTGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: CKDSELGFPTTENKVLSSSPLSQ*GILTCS Trigger: GGAGCAGGTCAGAATACCCCACTGGGAGAGGGGAGA...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTTCTCCCCTCTCCCAGTaGGGTATTCTGACCTGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSSPLSQ*GILTCS Trigger: GGAGCAGGTCAGAATACCCCACTGGGAGAGGGGAGA...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTACCACCATCATCCAGTaGACCCTGCCCAACATCCCA | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSTTIIQ*TLPNIP Trigger: TGGGATGTTGGGCAGGGTGCACTGGATGATGGTGGT...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTCCTCCTTGTTCTTCTaGAGTCCAGAGCACCAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: CKDSELGFPTTENKVLSSSSLFF*SPEHQA Trigger: CGCCTGGTGCTCTGGACTGCAGAAGAACAAGGAGGA...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | GGATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCGCGCAGAGTCCTCTTTaGACGCAGCCCAAGATCTTT | + |
|
Preference number: 4 (lower is better) Translates to: GCCKDSELGFPTTENKVLAQSPL*TQPKIF Trigger: AAAGATCTTGGGCTGCGTCCAAAGAGGACTCTGCGC...GAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | ATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCGTGCTTCCCATGATATaGAGGCTCCACCACCATCAT | + |
|
Preference number: 4 (lower is better) Translates to: IQSWDSQLQRTRSSLLVLVLPMI*RLHHHH Trigger: ATGATGGTGGTGGAGCCTTCATATCATGGGAAGCAC...GAGAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCGTGCTTCCCATGATATaGAGGCTCCACCACCATCAT | + |
|
Preference number: 4 (lower is better) Translates to: RFRVGIPNYREQGPLFLFVLPMI*RLHHHH Trigger: ATGATGGTGGTGGAGCCTTCATATCATGGGAAGCAC...GAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | GGATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTGCTTTGGATCCATaGCAGTCATGGTGTCTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: GCCKDSELGFPTTENKVLSALDP*QSWCLR Trigger: ACGGAGACACCATGACTGTCATGGATCCAAAGCAGA...GAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | GGATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCAGGCTCAAGCATCACTaGAGATTCTTCTCCCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: GCCKDSELGFPTTENKVLRLKHH*RFFSPL Trigger: GAGAGGGGAGAAGAATCTGCAGTGATGCTTGAGCCT...GAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTAGGCTCAAGCATCACTaGAGATTCTTCTCCCCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: CKDSELGFPTTENKVLSSRLKHH*RFFSPL Trigger: GAGAGGGGAGAAGAATCTGCAGTGATGCTTGAGCCT...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | GTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTTCACTGCCAGTGAACTaGAGTCCAGTGGGTAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: VKIQSWDSQLQRTRSSLLSLPVN*SPVGKK Trigger: CTTCTTACCCACTGGACTGCAGTTCACTGGCAGTGA...AAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | GGATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTGTGATACAGGCTGTTaGAATCTTGGGCACACCATC | + |
|
Preference number: 4 (lower is better) Translates to: GCCKDSELGFPTTENKVLCDTGC*NLGHTI Trigger: GATGGTGTGCCCAAGATTCCAACAGCCTGTATCACA...GAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | GGATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCGCTCCCAGTGATCTCTaGAACAGTATTGAAGGAATC | + |
|
Preference number: 4 (lower is better) Translates to: GCCKDSELGFPTTENKVLAPSDL*NSIEGI Trigger: GATTCCTTCAATACTGTTGCAGAGATCACTGGGAGC...GAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | TGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACACCACCATCATCCAGTaGACCCTGCCCAACATCCCA | + |
|
Preference number: 4 (lower is better) Translates to: WKQHFQGGAVGIMIYSRNTTIIQ*TLPNIP Trigger: TGGGATGTTGGGCAGGGTGCACTGGATGATGGTGGT...GTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | ATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCGTGACATTGAGGGGTTaGAGAAGATTCATGACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: IQSWDSQLQRTRSSLLVLVTLRG*RRFMTS Trigger: GGAAGTCATGAATCTTCTGCAACCCCTCAATGTCAC...GAGAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCCTAAAAGGTGAACAATaGACAGGAAGAAAAGGGACC | + |
|
Preference number: 4 (lower is better) Translates to: RFRVGIPNYREQGPLFLFLKGEQ*TGRKGT Trigger: GGTCCCTTTTCTTCCTGTTCATTGTTCACCTTTTAG...GAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACAGACCCAGTGGGGTATTCTaGCCTGCTCCAGGTGAACAT | + |
|
Preference number: 4 (lower is better) Translates to: KQHFQGGAVGIMIYSRNRPSGVF*PAPGEH Trigger: ATGTTCACCTGGAGCAGGTCAGAATACCCCACTGGG...TCTGTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTAGAATAGCCATCTTGTaGATTCGAGGCTCAAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: CKDSELGFPTTENKVLSSRIAIL*IRGSSI Trigger: GATGCTTGAGCCTCGAATTCACAAGATGGCTATTCT...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | GTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTAGAATAGCCATCTTGTaGATTCGAGGCTCAAGCATC | + |
|
Preference number: 4 (lower is better) Translates to: VKIQSWDSQLQRTRSSLLRIAIL*IRGSSI Trigger: GATGCTTGAGCCTCGAATTCACAAGATGGCTATTCT...AAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTGCATCTTCTACTGTaGTACAGGCTGTTGGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSLHLLL*YRLLES Trigger: AGATTCCAACAGCCTGTATCACAGTAGAAGATGCAG...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCCCATTTCCAGATGAATaGCAATTTTGTTCCCACGAG | + |
|
Preference number: 4 (lower is better) Translates to: RFRVGIPNYREQGPLFLFPFPDE*QFCSHE Trigger: CTCGTGGGAACAAAATTGTCATTCATCTGGAAATGG...GAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | ATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCTTTTCTAGCCCATCTTaGTGCAGGTTTTGGTACATG | + |
|
Preference number: 4 (lower is better) Translates to: IQSWDSQLQRTRSSLLVLFSSPS*CRFWYM Trigger: CATGTACCAAAACCTGCAGCAAGATGGGCTAGAAAA...GAGAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTGCTCCCAGTGATCTCTaGAACAGTATTGAAGGAATC | + |
|
Preference number: 4 (lower is better) Translates to: CKDSELGFPTTENKVLSSAPSDL*NSIEGI Trigger: GATTCCTTCAATACTGTTGCAGAGATCACTGGGAGC...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | GGATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCGAAGGAATCAGTATCTaGATAGGTCTTTGCTCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: GCCKDSELGFPTTENKVLEGISI*IGLCSH Trigger: ATGGGAGCAAAGACCTATCCAGATACTGATTCCTTC...GAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| 3UTR CAA 72 bp | CTCTTTTGTGACGATGGATGTTGTAAAGATTCAGAGTaGGGATTCCCAACTACAGAGAACAAGGTCCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LFCDDGCCKDSE*GFPTTENKVLS Trigger: AGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCCATCGTCACAAAAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTAAAAGGTGAACAATaGACAGGAAGAAAAGGGACC | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSLKGEQ*TGRKGT Trigger: GGTCCCTTTTCTTCCTGTTCATTGTTCACCTTTTAG...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | GTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTCCCAAGGCTAAAAGGTaGACAATGAACAGGAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: VKIQSWDSQLQRTRSSLLPKAKR*TMNRKK Trigger: TTTCTTCCTGTTCATTGTTCACCTTTTAGCCTTGGG...AAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | TGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACCTGACCTGCTCCAGGTaGACATTTTCTAGCCCATCT | + |
|
Preference number: 4 (lower is better) Translates to: WKQHFQGGAVGIMIYSRNLTCSR*TFSSPS Trigger: AGATGGGCTAGAAAATGTTCACCTGGAGCAGGTCAG...GTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTGCTGGTTATAAACAATaGTCTTCCCTCTTGCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSAGYKQ*SSLLLL Trigger: CAGAAGCAAGAGGGAAGATCATTGTTTATAACCAGC...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTGCTCCCATTTCCAGATaGATGACAATTTTGTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: CKDSELGFPTTENKVLSSAPISR*MTILFP Trigger: TGGGAACAAAATTGTCATTCATCTGGAAATGGGAGC...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | ATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCTCTCTGCAACAGTATTaGAGGAATCAGTATCTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: IQSWDSQLQRTRSSLLVLSLQQY*RNQYLD Trigger: ATCCAGATACTGATTCCTTCAATACTGTTGCAGAGA...GAGAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AACTGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGATCTGCTTTGGATCCATaGCAGTCATGGTGTCTCCGT | + |
|
Preference number: 4 (lower is better) Translates to: NWKQHFQGGAVGIMIYSRSALDP*QSWCLR Trigger: ACGGAGACACCATGACTGTCATGGATCCAAAGCAGA...TCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | AGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTGTGAGGACTGTAGATaGAAAAGGAAGCTACTGATT | + |
|
Preference number: 4 (lower is better) Translates to: RFRVGIPNYREQGPLFLFCEDCR*KRKLLI Trigger: AATCAGTAGCTTCCTTTTCCATCTACAGTCCTCACA...GAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | ATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCAACATTCATCTGCTTTaGATCCATGACAGTCATGGT | + |
|
Preference number: 4 (lower is better) Translates to: IQSWDSQLQRTRSSLLVLNIHLL*IHDSHG Trigger: ACCATGACTGTCATGGATCCAAAGCAGATGAATGTT...GAGAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | AGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCGAGACATCATTTCTaGATCTTCTACTGTGATACA | + |
|
Preference number: 4 (lower is better) Translates to: RFRVGIPNYREQGPLFLFSRHHF*IFYCDT Trigger: TGTATCACAGTAGAAGATGCAGAAATGATGTCTCGA...GAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTATCTGGATAGGTCTTTaGTCCCATTTCCAGATGAAT | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSIWIGL*SHFQMN Trigger: ATTCATCTGGAAATGGGAGCAAAGACCTATCCAGAT...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | AAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACAGATCACTGCCAGTGAACTaGAGTCCAGTGGGTAAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: KQHFQGGAVGIMIYSRNRSLPVN*SPVGKK Trigger: CTTCTTACCCACTGGACTGCAGTTCACTGGCAGTGA...TCTGTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTCATTTCATCCATGTCTaGAACAACATAAGCGACAAC | + |
|
Preference number: 4 (lower is better) Translates to: CKDSELGFPTTENKVLSSHFIHV*NNISDN Trigger: GTTGTCGCTTATGTTGTTGCAGACATGGATGAAATG...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCATTTCATCCATGTCTaGAACAACATAAGCGACAAC | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSHFIHV*NNISDN Trigger: GTTGTCGCTTATGTTGTTGCAGACATGGATGAAATG...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | TGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACTGTGATACAGGCTGTTaGAATCTTGGGCACACCATC | + |
|
Preference number: 4 (lower is better) Translates to: WKQHFQGGAVGIMIYSRNCDTGC*NLGHTI Trigger: GATGGTGTGCCCAAGATTCCAACAGCCTGTATCACA...GTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTAACATTCATCTGCTTTaGATCCATGACAGTCATGGT | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSNIHLL*IHDSHG Trigger: ACCATGACTGTCATGGATCCAAAGCAGATGAATGTT...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | TGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACGTGACATTGAGGGGTTaGAGAAGATTCATGACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: WKQHFQGGAVGIMIYSRNVTLRG*RRFMTS Trigger: GGAAGTCATGAATCTTCTGCAACCCCTCAATGTCAC...GTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | AGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCACCAAGCTGTACTTaGAAATATTTGCCTTATGTA | + |
|
Preference number: 4 (lower is better) Translates to: RFRVGIPNYREQGPLFLFSPSCT*KYLPYV Trigger: TACATAAGGCAAATATTTCCAAGTACAGCTTGGTGA...GAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AACTGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGACCCAAGGCTAAAAGGTaGACAATGAACAGGAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: NWKQHFQGGAVGIMIYSRPKAKR*TMNRKK Trigger: TTTCTTCCTGTTCATTGTTCACCTTTTAGCCTTGGG...TCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | TGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACGCTGGTTATAAACAATaGTCTTCCCTCTTGCTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: WKQHFQGGAVGIMIYSRNAGYKQ*SSLLLL Trigger: CAGAAGCAAGAGGGAAGATCATTGTTTATAACCAGC...GTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACAGACTGCATCTTCTACTGTaGTACAGGCTGTTGGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: KQHFQGGAVGIMIYSRNRLHLLL*YRLLES Trigger: AGATTCCAACAGCCTGTATCACAGTAGAAGATGCAG...TCTGTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | TGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACTTTTCTAGCCCATCTTaGTGCAGGTTTTGGTACATG | + |
|
Preference number: 4 (lower is better) Translates to: WKQHFQGGAVGIMIYSRNFSSPS*CRFWYM Trigger: CATGTACCAAAACCTGCAGCAAGATGGGCTAGAAAA...GTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | AACTGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAGGCTGTTGGAATCTTaGGCACACCATCTTGATATT | + |
|
Preference number: 4 (lower is better) Translates to: NWKQHFQGGAVGIMIYSRRLLES*AHHLDI Trigger: AATATCAAGATGGTGTGCCCAAGATTCCAACAGCCT...TCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | TGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACAGGCTGTTGGAATCTTaGGCACACCATCTTGATATT | + |
|
Preference number: 4 (lower is better) Translates to: WKQHFQGGAVGIMIYSRNRLLES*AHHLDI Trigger: AATATCAAGATGGTGTGCCCAAGATTCCAACAGCCT...GTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | GATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTTCACCAAGCTGTACTTaGAAATATTTGCCTTATGTA | + |
|
Preference number: 4 (lower is better) Translates to: DVVKIQSWDSQLQRTRSSSPSCT*KYLPYV Trigger: TACATAAGGCAAATATTTCCAAGTACAGCTTGGTGA...AGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AACTGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGATCTGATGCTCTTCTTTaGAGTTCATCAAAAGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: NWKQHFQGGAVGIMIYSRSDALL*SSSKEA Trigger: AGCCTCTTTTGATGAACTTCAAAGAAGAGCATCAGA...TCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACAGAGCTCCCATTTCCAGATaGATGACAATTTTGTTCCCA | + |
|
Preference number: 4 (lower is better) Translates to: KQHFQGGAVGIMIYSRNRAPISR*MTILFP Trigger: TGGGAACAAAATTGTCATTCATCTGGAAATGGGAGC...TCTGTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AACTGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGATCTCTGCAACAGTATTaGAGGAATCAGTATCTGGAT | + |
|
Preference number: 4 (lower is better) Translates to: NWKQHFQGGAVGIMIYSRSLQQY*RNQYLD Trigger: ATCCAGATACTGATTCCTTCAATACTGTTGCAGAGA...TCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR GCA 90 bp | TGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACATCTGGATAGGTCTTTaGTCCCATTTCCAGATGAAT | + |
|
Preference number: 4 (lower is better) Translates to: WKQHFQGGAVGIMIYSRNIWIGL*SHFQMN Trigger: ATTCATCTGGAAATGGGAGCAAAGACCTATCCAGAT...GTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CCA 90 bp | AAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACAGAGAAGGAATCAGTATCTaGATAGGTCTTTGCTCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: KQHFQGGAVGIMIYSRNREGISI*IGLCSH Trigger: ATGGGAGCAAAGACCTATCCAGATACTGATTCCTTC...TCTGTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR TCA 90 bp | AAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACAGATCTGATGCTCTTCTTTaGAGTTCATCAAAAGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: KQHFQGGAVGIMIYSRNRSDALL*SSSKEA Trigger: AGCCTCTTTTGATGAACTTCAAAGAAGAGCATCAGA...TCTGTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS GCA 90 bp | GCTTCCCATGATATGAAGGCTCCACCACCATCATCCAGTGCACCCTaGCCAACATCCCAGCTGTCCAAATGTCCACTGACCAGGACAACT | + |
|
Preference number: 5 (lower is better) Translates to: ASHDMKAPPPSSSAP*PTSQLSKCPLTRTT Trigger: AGTTGTCCTGGTCAGTGGACATTTGGACAGCTGGGATGTTGGGCAGGGTGCACTGGATGATGGTGGTGGAGCCTTCATATCATGGGAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 90 bp | GGGGGAGTCCCAATGCTGCTGCCAAGACCTAGAATAGCCATCTTGTaGATTCGAGGCTCAAGCATCACTGCAGATTCTTCTCCCCTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GGVPMLLPRPRIAIL*IRGSSITADSSPLS Trigger: GGAGAGGGGAGAAGAATCTGCAGTGATGCTTGAGCCTCGAATTCACAAGATGGCTATTCTAGGTCTTGGCAGCAGCATTGGGACTCCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000042167.10 ENSMUST00000228737.2 ENSMUST00000228916.2 |
||
| CDS TCA 90 bp | TTTCTGAATACCTGTGTGAGGACTGTAGATGGAAAAGGAAGCTACTaGTTGGATGAGGGATGCCACAGCTCCCACCTTGGCAGCTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: FLNTCVRTVDGKGSY*LDEGCHSSHLGSFH Trigger: GTGGAAGCTGCCAAGGTGGGAGCTGTGGCATCCCTCATCCAATCAGTAGCTTCCTTTTCCATCTACAGTCCTCACACAGGTATTCAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | GGATGTTGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCGGCGCAGAGTCCTCTTaGGACGCAGCCCAAGATCTT | + |
|
Preference number: 5 (lower is better) Translates to: GCCKDSELGFPTTENKVLGAESS*DAAQDL Trigger: AAGATCTTGGGCTGCGTCCAAAGAGGACTCTGCGCC...GAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACAACATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | ATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCGGCGCAGAGTCCTCTTaGGACGCAGCCCAAGATCTT | + |
|
Preference number: 5 (lower is better) Translates to: IQSWDSQLQRTRSSLLVLGAESS*DAAQDL Trigger: AAGATCTTGGGCTGCGTCCAAAGAGGACTCTGCGCC...GAGAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS GCA 90 bp | ACTGACCAGGACAACTTCCTCTGGATACATGCTCCCAGTGATCTCTaGAACAGTATTGAAGGAATCAGTATCTGGATAGGTCTTTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: TDQDNFLWIHAPSDL*NSIEGISIWIGLCS Trigger: GGAGCAAAGACCTATCCAGATACTGATTCCTTCAATACTGTTGCAGAGATCACTGGGAGCATGTATCCAGAGGAAGTTGTCCTGGTCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS CCA 90 bp | ATAAGCGACAACAGCCCATACAGCAGCAGCAACATTCATCTGCTTTaGATCCATGACAGTCATGGTGTCTCCGTGGGAATGATGGAAAAA | + |
|
Preference number: 5 (lower is better) Translates to: ISDNSPYSSSNIHLL*IHDSHGVSVGMMEK Trigger: TTTTTCCATCATTCCCACGGAGACACCATGACTGTCATGGATCCAAAGCAGATGAATGTTGCTGCTGCTGTATGGGCTGTTGTCGCTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 90 bp | CAACAGCCCATACAGCAGCAGCAACATTCATCTGCTTTGGATCCATaGCAGTCATGGTGTCTCCGTGGGAATGATGGAAAAAGAAATACT | + |
|
Preference number: 5 (lower is better) Translates to: QQPIQQQQHSSALDP*QSWCLRGNDGKRNT Trigger: AGTATTTCTTTTTCCATCATTCCCACGGAGACACCATGACTGTCATGGATCCAAAGCAGATGAATGTTGCTGCTGCTGTATGGGCTGTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS GCA 90 bp | TCAGTTCCTTCTCCATTACTAAAGACCTTGGTGACATTGAGGGGTTaGAGAAGATTCATGACTTCCTTCATGATAGCCCTGGCCTTGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SVPSPLLKTLVTLRG*RRFMTSFMIALALS Trigger: TGACAAGGCCAGGGCTATCATGAAGGAAGTCATGAATCTTCTGCAACCCCTCAATGTCACCAAGGTCTTTAGTAATGGAGAAGGAACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 90 bp | TTCATCTGCTTTGGATCCATGACAGTCATGGTGTCTCCGTGGGAATaGTGGAAAAAGAAATACTTGTACAAGTCATCACGCAGACTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: FICFGSMTVMVSPWE*WKKKYLYKSSRRLA Trigger: AGCCAGTCTGCGTGATGACTTGTACAAGTATTTCTTTTTCCATCATTCCCACGGAGACACCATGACTGTCATGGATCCAAAGCAGATGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS CCA 90 bp | TACTTGTACAAGTCATCACGCAGACTGGCTCCAGGTACTCCAGCTTaGATCCAGAAGTTAATATCAGTTCCTTCTCCATTACTAAAGACC | + |
|
Preference number: 5 (lower is better) Translates to: YLYKSSRRLAPGTPA*IQKLISVPSPLLKT Trigger: GGTCTTTAGTAATGGAGAAGGAACTGATATTAACTTCTGGATCCAAGCTGGAGTACCTGGAGCCAGTCTGCGTGATGACTTGTACAAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTAAGACCTTGGTGACATaGAGGGGTTGCAGAAGATTC | + |
|
Preference number: 5 (lower is better) Translates to: CKDSELGFPTTENKVLSSKTLVT*RGCRRF Trigger: GAATCTTCTGCAACCCCTCAATGTCACCAAGGTCTT...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | ATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCTCTATCTGGATAGGTCTTaGCTCCCATTTCCAGATGAA | + |
|
Preference number: 5 (lower is better) Translates to: IQSWDSQLQRTRSSLLVLYLDRS*LPFPDE Trigger: TTCATCTGGAAATGGGAGCAAAGACCTATCCAGATA...GAGAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | AAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAACAGAATGATAGCCCTGGCCTaGTCACTGCCAGTGAACTGC | + |
|
Preference number: 5 (lower is better) Translates to: KQHFQGGAVGIMIYSRNRMIALA*SLPVNC Trigger: GCAGTTCACTGGCAGTGACAAGGCCAGGGCTATCAT...TCTGTTTCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 90 bp | AGGAATCAGTATCTGGATAGGTCTTTGCTCCCATTTCCAGATGAATaGCAATTTTGTTCCCACGAGAAGCCATTCGAGACATCATTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: RNQYLDRSLLPFPDE*QFCSHEKPFETSFL Trigger: CAGAAATGATGTCTCGAATGGCTTCTCGTGGGAACAAAATTGTCATTCATCTGGAAATGGGAGCAAAGACCTATCCAGATACTGATTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTATCTGGATAGGTCTTaGCTCCCATTTCCAGATGAA | + |
|
Preference number: 5 (lower is better) Translates to: CKDSELGFPTTENKVLSSYLDRS*LPFPDE Trigger: TTCATCTGGAAATGGGAGCAAAGACCTATCCAGATA...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | AGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTTGTTCATCTCTGCAACAGTATaGAAGGAATCAGTATCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: RFRVGIPNYREQGPLFLFISATV*KESVSG Trigger: TCCAGATACTGATTCCTTCAATACTGTTGCAGAGAT...GAACAAGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | TGTAAAGATTCAGAGTTGGGATTCCCAACTACAGAGAACAAGGTCCTCTCTTCTATCTTGCTGCAGGTTTaGGTACATGATTTGAATAGC | + |
|
Preference number: 5 (lower is better) Translates to: CKDSELGFPTTENKVLSSILLQV*VHDLNS Trigger: GCTATTCAAATCATGTACCAAAACCTGCAGCAAGAT...AGAAGAGAGGACCTTGTTCTCTGTAGTTGGGAATCCCAACTCTGAATCTTTACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | AACTGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAAAGACCTTGGTGACATaGAGGGGTTGCAGAAGATTC | + |
|
Preference number: 5 (lower is better) Translates to: NWKQHFQGGAVGIMIYSRKTLVT*RGCRRF Trigger: GAATCTTCTGCAACCCCTCAATGTCACCAAGGTCTT...TCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS-3UTR CAA 90 bp | AACTGGAAACAACATTTTCAAGGTGGTGCAGTAGGGATCATGATTTATTCTAGAATCTTGCTGCAGGTTTaGGTACATGATTTGAATAGC | + |
|
Preference number: 5 (lower is better) Translates to: NWKQHFQGGAVGIMIYSRILLQV*VHDLNS Trigger: GCTATTCAAATCATGTACCAAAACCTGCAGCAAGAT...TCTAGAATAAATCATGATCCCTACTGCACCACCTTGAAAATGTTGTTTCCAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 72 bp | CACCCTGCCCAACATCCCAGCTGTCCAAATGTCCACTaGCCAGGACAACTTCCTCTGGATACATGCTCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: HPAQHPSCPNVH*PGQLPLDTCSQ Trigger: CTGGGAGCATGTATCCAGAGGAAGTTGTCCTGGTCAGTGGACATTTGGACAGCTGGGATGTTGGGCAGGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS GCA 72 bp | GATATGAAGGCTCCACCACCATCATCCAGTGCACCCTaGCCAACATCCCAGCTGTCCAAATGTCCACTGACC | + |
|
Preference number: 6 (lower is better) Translates to: DMKAPPPSSSAP*PTSQLSKCPLT Trigger: GGTCAGTGGACATTTGGACAGCTGGGATGTTGGGCAGGGTGCACTGGATGATGGTGGTGGAGCCTTCATATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 72 bp | ACCTGTGTGAGGACTGTAGATGGAAAAGGAAGCTACTaGTTGGATGAGGGATGCCACAGCTCCCACCTTGGC | + |
|
Preference number: 6 (lower is better) Translates to: TCVRTVDGKGSY*LDEGCHSSHLG Trigger: GCCAAGGTGGGAGCTGTGGCATCCCTCATCCAATCAGTAGCTTCCTTTTCCATCTACAGTCCTCACACAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS GCA 72 bp | ATAATACTGGGAGGCACCAATTCCTCCTTGTTCTTCTaGAGTCCAGAGCACCAGGCGCAGAGTCCTCTTTGG | + |
|
Preference number: 6 (lower is better) Translates to: IILGGTNSSLFF*SPEHQAQSPLW Trigger: CCAAAGAGGACTCTGCGCCTGGTGCTCTGGACTGCAGAAGAACAAGGAGGAATTGGTGCCTCCCAGTATTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS GCA 72 bp | GCGACAACAGCCCATACAGCAGCAGCAACATTCATCTaGTTTGGATCCATGACAGTCATGGTGTCTCCGTGG | + |
|
Preference number: 6 (lower is better) Translates to: ATTAHTAAATFI*FGSMTVMVSPW Trigger: CCACGGAGACACCATGACTGTCATGGATCCAAAGCAGATGAATGTTGCTGCTGCTGTATGGGCTGTTGTCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS CAA 90 bp | AGGGGTTGCAGAAGATTCATGACTTCCTTCATGATAGCCCTGGCCTaGTCACTGCCAGTGAACTGCAGTCCAGTGGGTAAGAAGGTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: RGCRRFMTSFMIALA*SLPVNCSPVGKKVP Trigger: AGGAACCTTCTTACCCACTGGACTGCAGTTCACTGGCAGTGACAAGGCCAGGGCTATCATGAAGGAAGTCATGAATCTTCTGCAACCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS CAA 72 bp | AGAAGATTCATGACTTCCTTCATGATAGCCCTGGCCTaGTCACTGCCAGTGAACTGCAGTCCAGTGGGTAAG | + |
|
Preference number: 6 (lower is better) Translates to: RRFMTSFMIALA*SLPVNCSPVGK Trigger: CTTACCCACTGGACTGCAGTTCACTGGCAGTGACAAGGCCAGGGCTATCATGAAGGAAGTCATGAATCTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 72 bp | CCAATGCTGCTGCCAAGACCTAGAATAGCCATCTTGTaGATTCGAGGCTCAAGCATCACTGCAGATTCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: PMLLPRPRIAIL*IRGSSITADSS Trigger: AGAAGAATCTGCAGTGATGCTTGAGCCTCGAATTCACAAGATGGCTATTCTAGGTCTTGGCAGCAGCATTGG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042167.10 ENSMUST00000228737.2 ENSMUST00000228916.2 |
||
| CDS CAA 90 bp | ATCAGTTCCTTCTCCATTACTAAAGACCTTGGTGACATTGAGGGGTaGCAGAAGATTCATGACTTCCTTCATGATAGCCCTGGCCTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: ISSFSITKDLGDIEG*QKIHDFLHDSPGLV Trigger: GACAAGGCCAGGGCTATCATGAAGGAAGTCATGAATCTTCTGCAACCCCTCAATGTCACCAAGGTCTTTAGTAATGGAGAAGGAACTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 72 bp | ATACAGCAGCAGCAACATTCATCTGCTTTGGATCCATaGCAGTCATGGTGTCTCCGTGGGAATGATGGAAAA | + |
|
Preference number: 6 (lower is better) Translates to: IQQQQHSSALDP*QSWCLRGNDGK Trigger: TTTTCCATCATTCCCACGGAGACACCATGACTGTCATGGATCCAAAGCAGATGAATGTTGCTGCTGCTGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS GCA 72 bp | GACAACTTCCTCTGGATACATGCTCCCAGTGATCTCTaGAACAGTATTGAAGGAATCAGTATCTGGATAGGT | + |
|
Preference number: 6 (lower is better) Translates to: DNFLWIHAPSDL*NSIEGISIWIG Trigger: ACCTATCCAGATACTGATTCCTTCAATACTGTTGCAGAGATCACTGGGAGCATGTATCCAGAGGAAGTTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS CAA 90 bp | ATACTTGTACAAGTCATCACGCAGACTGGCTCCAGGTACTCCAGCTaGGATCCAGAAGTTAATATCAGTTCCTTCTCCATTACTAAAGAC | + |
|
Preference number: 6 (lower is better) Translates to: ILVQVITQTGSRYSS*DPEVNISSFSITKD Trigger: GTCTTTAGTAATGGAGAAGGAACTGATATTAACTTCTGGATCCAAGCTGGAGTACCTGGAGCCAGTCTGCGTGATGACTTGTACAAGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 72 bp | TCTAGCCCATCTTGCTGCAGGTTTTGGTACATGATTTaGATAGCTTTCTCTAGGTTCTTAGAGCCACTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: SSPSCCRFWYMI*IAFSRFLEPLS Trigger: ACTGAGTGGCTCTAAGAACCTAGAGAAAGCTATTCAAATCATGTACCAAAACCTGCAGCAAGATGGGCTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042167.10 ENSMUST00000226483.2 ENSMUST00000228737.2 ENSMUST00000228916.2 |
||
| CDS TCA 72 bp | TATCTGGATAGGTCTTTGCTCCCATTTCCAGATGAATaGCAATTTTGTTCCCACGAGAAGCCATTCGAGACA | + |
|
Preference number: 6 (lower is better) Translates to: YLDRSLLPFPDE*QFCSHEKPFET Trigger: TGTCTCGAATGGCTTCTCGTGGGAACAAAATTGTCATTCATCTGGAAATGGGAGCAAAGACCTATCCAGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS GCA 72 bp | TTTGTTCCCACGAGAAGCCATTCGAGACATCATTTCTaGATCTTCTACTGTGATACAGGCTGTTGGAATCTT | + |
|
Preference number: 6 (lower is better) Translates to: FVPTRSHSRHHF*IFYCDTGCWNL Trigger: AAGATTCCAACAGCCTGTATCACAGTAGAAGATGCAGAAATGATGTCTCGAATGGCTTCTCGTGGGAACAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS CAA 72 bp | TCAGTTCCTTCTCCATTACTAAAGACCTTGGTGACATaGAGGGGTTGCAGAAGATTCATGACTTCCTTCATG | + |
|
Preference number: 6 (lower is better) Translates to: SVPSPLLKTLVT*RGCRRFMTSFM Trigger: CATGAAGGAAGTCATGAATCTTCTGCAACCCCTCAATGTCACCAAGGTCTTTAGTAATGGAGAAGGAACTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||
| CDS TCA 72 bp | TTATTTCTCGAAATGTTCGCTGAGAAACACCATTCTTaGATACAGCTTTACCAGAGCCCAAGGCTAAAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: LFLEMFAEKHHS*IQLYQSPRLKG Trigger: ACCTTTTAGCCTTGGGCTCTGGTAAAGCTGTATTCAAGAATGGTGTTTCTCAGCGAACATTTCGAGAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000042167.10 ENSMUST00000226483.2 ENSMUST00000228737.2 ENSMUST00000228916.2 |
||
| CDS TCA 72 bp | TCTTCTCATAGCCAGTGTAAGGCTGGTTATAAACAATaGTCTTCCCTCTTGCTTCTGATGCTCTTCTTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: SSHSQCKAGYKQ*SSLLLLMLFFE Trigger: TTCAAAGAAGAGCATCAGAAGCAAGAGGGAAGATCATTGTTTATAACCAGCCTTACACTGGCTATGAGAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042167.10 ENSMUST00000228737.2 ENSMUST00000228916.2 |
||
| CDS CCA 72 bp | CATCATTTCTGCATCTTCTACTGTGATACAGGCTGTTaGAATCTTGGGCACACCATCTTGATATTTCTGAAT | + |
|
Preference number: 6 (lower is better) Translates to: HHFCIFYCDTGC*NLGHTILIFLN Trigger: ATTCAGAAATATCAAGATGGTGTGCCCAAGATTCCAACAGCCTGTATCACAGTAGAAGATGCAGAAATGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042167.10 ENSMUST00000228916.2 |
||