Pregenerated sensors for CPOX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022742Ensembl transcript IDs: ENSMUST00000060077.7
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGGCTTCAAATTGCATTCCAAAGTTCCCAAGAAGGGCATCCTGACTaGACTAATGAAGATAAAATGTATTCCCTGATAAACTTCTGTAGC | + |
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Preference number: 1 (lower is better) Translates to: WLQIAFQSSQEGHPD*TNEDKMYSLINFCS Trigger: GCTACAGAAGTTTATCAGGGAATACATTTTATCTTCATTAGTTCAGTCAGGATGCCCTTCTTGGGAACTTTGGAATGCAATTTGAAGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR-3UTR GCA 90 bp | TCAAAATCACAGAGATCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAGGCACGGAAGACACTaGCTGCCACACAGTGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: SKSQRSTSLCFLNTEIKGRHGRH*LPHSGH Trigger: GTGGCCACTGTGTGGCAGGCAGTGTCTTCCGTGCCT...GCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR-3UTR TCA 90 bp | TCAAAATCACAGAGATCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAGGAATCTGACAGTTTaGCATCCCCACCCACCTCTG | + |
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Preference number: 2 (lower is better) Translates to: SKSQRSTSLCFLNTEIKGRNLTV*HPHPPL Trigger: CAGAGGTGGGTGGGGATGTCAAACTGTCAGATTCCT...GCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR-3UTR CCA 90 bp | CTAAAAGTACAAATGGATGTCACAGACAAGGAATCTGACAGTTTGACATCCCCACTGCCTGCCACACAGTaGCCACAGTGCACGAAGACA | + |
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Preference number: 2 (lower is better) Translates to: LKVQMDVTDKESDSLTSPLPATQ*PQCTKT Trigger: TGTCTTCGTGCACTGTGGCCACTGTGTGGCAGGCAG...TGGGGATGTCAAACTGTCAGATTCCTTGTCTGTGACATCCATTTGTACTTTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR-3UTR GCA 90 bp | AAAGTTCCCAAGAAGGGCATCCTGACTGAACTAATGAAGATAAAATGTATTCCCACGGAAGACACTGCCTaGCACACAGTGGCCACAGTG | + |
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Preference number: 2 (lower is better) Translates to: KVPKKGILTELMKIKCIPTEDTA*HTVATV Trigger: CACTGTGGCCACTGTGTGGCAGGCAGTGTCTTCCGT...GGGAATACATTTTATCTTCATTAGTTCAGTCAGGATGCCCTTCTTGGGAACTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR-3UTR CCA 90 bp | AAAGTTCCCAAGAAGGGCATCCTGACTGAACTAATGAAGATAAAATGTATTCCCCTCCTCCCACAGCACTaGAAAAGATCAAAACCGCCT | + |
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Preference number: 2 (lower is better) Translates to: KVPKKGILTELMKIKCIPLLPQH*KRSKPP Trigger: AGGCGGTTTTGATCTTTTCCAGTGCTGTGGGAGGAG...GGGAATACATTTTATCTTCATTAGTTCAGTCAGGATGCCCTTCTTGGGAACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR-3UTR TCA 90 bp | TTTTCTTACCCTAAAAGTGGCAAACACAATCACATACATCCAACATATTCCAGGCACAGACAAGGAATCTaGCAGTTTGACATCCCCACC | + |
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Preference number: 2 (lower is better) Translates to: FSYPKSGKHNHIHPTYSRHRQGI*QFDIPT Trigger: GGTGGGGATGTCAAACTGTCAGATTCCTTGTCTGTG...CCTGGAATATGTTGGATGTATGTGATTGTGTTTGCCACTTTTAGGGTAAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR-3UTR TCA 90 bp | TCAAAATCACAGAGATCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCGAAGGGCATCCTGACTaGACTAATGAAGATAAAATG | + |
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Preference number: 2 (lower is better) Translates to: SKSQRSTSLCFLNTEIKGEGHPD*TNEDKM Trigger: CATTTTATCTTCATTAGTTCAGTCAGGATGCCCTTC...GCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR-3UTR GCA 90 bp | TTTTCTTACCCTAAAAGTGGCAAACACAATCACATACATCCAACATATTCCAGGCTTGCAAACTTTATATaGCCCAGTACGGGGGAACGC | + |
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Preference number: 2 (lower is better) Translates to: FSYPKSGKHNHIHPTYSRLANFI*PSTGER Trigger: GCGTTCCCCCGTACTGGGGCATATAAAGTTTGCAAG...CCTGGAATATGTTGGATGTATGTGATTGTGTTTGCCACTTTTAGGGTAAGAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR TCA 72 bp | TACAAATGGATGTCACAGACAAGGAATCTGACAGTTTaGCATCCCCACCCACCTCTGAGCCACCTCCTCCCA | + |
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Preference number: 3 (lower is better) Translates to: YKWMSQTRNLTV*HPHPPLSHLLP Trigger: TGGGAGGAGGTGGCTCAGAGGTGGGTGGGGATGTCAAACTGTCAGATTCCTTGTCTGTGACATCCATTTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR TCA 72 bp | CCTCAAAATCACAGAGATCCACCAGCCTCTGCTTCCTaGATACTGAGATTAAAGGCAAACATCACCACGGAC | + |
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Preference number: 3 (lower is better) Translates to: PQNHRDPPASAS*ILRLKANITTD Trigger: GTCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR GCA 72 bp | AGCCTGGCCTCAAAATCACAGAGATCCACCAGCCTCTaGTTCCTGAATACTGAGATTAAAGGCAAACATCAC | + |
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Preference number: 3 (lower is better) Translates to: SLASKSQRSTSL*FLNTEIKGKHH Trigger: GTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGAGGCCAGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR-3UTR CAA 90 bp | TTTTCTTACCCTAAAAGTGGCAAACACAATCACATACATCCAACATATTCCAGGCGGACTGGCTTCAAATaGCATTCCAAAGTTCCCAAG | + |
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Preference number: 3 (lower is better) Translates to: FSYPKSGKHNHIHPTYSRRTGFK*HSKVPK Trigger: CTTGGGAACTTTGGAATGCAATTTGAAGCCAGTCCG...CCTGGAATATGTTGGATGTATGTGATTGTGTTTGCCACTTTTAGGGTAAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| 3UTR TCA 72 bp | ATTGCATTCCAAAGTTCCCAAGAAGGGCATCCTGACTaGACTAATGAAGATAAAATGTATTCCCTGATAAAC | + |
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Preference number: 3 (lower is better) Translates to: IAFQSSQEGHPD*TNEDKMYSLIN Trigger: GTTTATCAGGGAATACATTTTATCTTCATTAGTTCAGTCAGGATGCCCTTCTTGGGAACTTTGGAATGCAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | TCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAAACATCACCACGGAGCGCCCCCGAGCTCTTaGGCACCATCTCCGCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: STSLCFLNTEIKGKHHHGAPPSS*APSPPA Trigger: AGCGGGCGGAGATGGTGCCCAAGAGCTCGGGGGCGC...TCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | ACATTCCCTTATCTCAAAGACCTGGAAACACAATGTCAAACTGACTGGTCACAGACCATCTCCGCCCGCTaGACGTGCCCAAAGGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: TFPYLKDLETQCQTDWSQTISAR*TCPKAA Trigger: CGCCGCCTTTGGGCACGTGCAGCGGGCGGAGATGGT...CTGTGACCAGTCAGTTTGACATTGTGTTTCCAGGTCTTTGAGATAAGGGAATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | AAAGTTCCCAAGAAGGGCATCCTGACTGAACTAATGAAGATAAAATGTATTCCCGCTGGGGACCAGCCGTaGCAGGCAGCTGGCAGACGC | + |
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Preference number: 4 (lower is better) Translates to: KVPKKGILTELMKIKCIPAGDQP*QAAGRR Trigger: GCGTCTGCCAGCTGCCTGGCACGGCTGGTCCCCAGC...GGGAATACATTTTATCTTCATTAGTTCAGTCAGGATGCCCTTCTTGGGAACTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | TTTTCTTACCCTAAAAGTGGCAAACACAATCACATACATCCAACATATTCCAGGTCCGCCCGCTGCACGTaGCCAAAGGCGGCGGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: FSYPKSGKHNHIHPTYSRSARCT*PKAAAA Trigger: GGCAGCCGCCGCCTTTGGGCACGTGCAGCGGGCGGA...CCTGGAATATGTTGGATGTATGTGATTGTGTTTGCCACTTTTAGGGTAAGAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | TCAAAATCACAGAGATCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCCCTCTCCTCAGCTGCTaGCACAGCTTGTCCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: SKSQRSTSLCFLNTEIKGPLLSC*HSLSLG Trigger: CCCCAGGGACAAGCTGTGGCAGCAGCTGAGGAGAGG...GCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | TCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAAACATCACCACGGATCATCAGCTCCATCTTaGTCTTCATGTCCTCCGGCC | + |
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Preference number: 4 (lower is better) Translates to: STSLCFLNTEIKGKHHHGSSAPS*SSCPPA Trigger: GGCCGGAGGACATGAAGACCAAGATGGAGCTGATGA...TCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | ACATTCCCTTATCTCAAAGACCTGGAAACACAATGTCAAACTGACTGGTCACAGGCCACAGCTTGTCCCTaGGGGTGTAGGAGTCATCGC | + |
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Preference number: 4 (lower is better) Translates to: TFPYLKDLETQCQTDWSQATACP*GCRSHR Trigger: GCGATGACTCCTACACCCCCAGGGACAAGCTGTGGC...CTGTGACCAGTCAGTTTGACATTGTGTTTCCAGGTCTTTGAGATAAGGGAATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR TCA 90 bp | ACATTCCCTTATCTCAAAGACCTGGAAACACAATGTCAAACTGACTGGTCACAGAGTGCCCGACACACCTaGGCCTGGGTCTCCATAATC | + |
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Preference number: 4 (lower is better) Translates to: TFPYLKDLETQCQTDWSQSARHT*AWVSII Trigger: GATTATGGAGACCCAGGCTCAGGTGTGTCGGGCACT...CTGTGACCAGTCAGTTTGACATTGTGTTTCCAGGTCTTTGAGATAAGGGAATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR TCA 90 bp | TCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAAACATCACCACGGATCAGAAAGATTCCCATaGACGACGGAAATGCTCACC | + |
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Preference number: 4 (lower is better) Translates to: STSLCFLNTEIKGKHHHGSERFP*TTEMLT Trigger: GGTGAGCATTTCCGTCGTTCATGGGAATCTTTCTGA...TCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | AAAGTTCCCAAGAAGGGCATCCTGACTGAACTAATGAAGATAAAATGTATTCCCATCTACCTGCGCCAGTaGCCGACACACCTGAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: KVPKKGILTELMKIKCIPIYLRQ*PTHLSL Trigger: CAGGCTCAGGTGTGTCGGGCACTGGCGCAGGTAGAT...GGGAATACATTTTATCTTCATTAGTTCAGTCAGGATGCCCTTCTTGGGAACTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | TTTTCTTACCCTAAAAGTGGCAAACACAATCACATACATCCAACATATTCCAGGGCAACGCCATCTACCTaGGCCAGTGCCCGACACACC | + |
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Preference number: 4 (lower is better) Translates to: FSYPKSGKHNHIHPTYSRATPST*ASARHT Trigger: GGTGTGTCGGGCACTGGCGCAGGTAGATGGCGTTGC...CCTGGAATATGTTGGATGTATGTGATTGTGTTTGCCACTTTTAGGGTAAGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | TCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAAACATCACCACGGAAGAGGCCAAACTTGGTaGCCCGATCATACAACAGAT | + |
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Preference number: 4 (lower is better) Translates to: STSLCFLNTEIKGKHHHGRGQTW*PDHTTD Trigger: ATCTGTTGTATGATCGGGGCACCAAGTTTGGCCTCT...TCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | ACATTCCCTTATCTCAAAGACCTGGAAACACAATGTCAAACTGACTGGTCACAGGGAAAGCCTCCTCCTTaGAGGGGGAGTCAAGATCGT | + |
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Preference number: 4 (lower is better) Translates to: TFPYLKDLETQCQTDWSQGKPPP*RGSQDR Trigger: ACGATCTTGACTCCCCCTCCAAGGAGGAGGCTTTCC...CTGTGACCAGTCAGTTTGACATTGTGTTTCCAGGTCTTTGAGATAAGGGAATGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | TCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAAACATCACCACGGAACCCAGTCCTTTGGATaGCGCAACACTTCCAGAATT | + |
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Preference number: 4 (lower is better) Translates to: STSLCFLNTEIKGKHHHGTQSFG*RNTSRI Trigger: AATTCTGGAAGTGTTGCGCCATCCAAAGGACTGGGT...TCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | CTAAAAGTACAAATGGATGTCACAGACAAGGAATCTGACAGTTTGACATCCCCAGTGCACCCAGTCCTTTaGATGGCGCAACACTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LKVQMDVTDKESDSLTSPVHPVL*MAQHFQ Trigger: CTGGAAGTGTTGCGCCATCCAAAGGACTGGGTGCAC...TGGGGATGTCAAACTGTCAGATTCCTTGTCTGTGACATCCATTTGTACTTTTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR TCA 90 bp | TCAAAATCACAGAGATCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCCAAAGTATCTGTAGTTaGAATGCATGGTGGGCGCAT | + |
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Preference number: 4 (lower is better) Translates to: SKSQRSTSLCFLNTEIKGQSICS*NAWWAH Trigger: ATGCGCCCACCATGCATTTCAACTACAGATACTTTG...GCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | TCAAAATCACAGAGATCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCTCGTCTTCAGAGTTTTaGCTCTGCCTCTCATTTGGT | + |
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Preference number: 4 (lower is better) Translates to: SKSQRSTSLCFLNTEIKGSSSEF*LCLSFG Trigger: ACCAAATGAGAGGCAGAGGCAAAACTCTGAAGACGA...GCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | CTAAAAGTACAAATGGATGTCACAGACAAGGAATCTGACAGTTTGACATCCCCACCTCTGCCTCTCATTTaGTTCGCTGCTTCCTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LKVQMDVTDKESDSLTSPPLPLI*FAASSE Trigger: TTCTGAGGAAGCAGCGAACCAAATGAGAGGCAGAGG...TGGGGATGTCAAACTGTCAGATTCCTTGTCTGTGACATCCATTTGTACTTTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | ACATTCCCTTATCTCAAAGACCTGGAAACACAATGTCAAACTGACTGGTCACAGTGGACAGCATCCTCTTaGTTCAAGTATGTCGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: TFPYLKDLETQCQTDWSQWTASS*FKYVGV Trigger: CACACCGACATACTTGAACCAAGAGGATGCTGTCCA...CTGTGACCAGTCAGTTTGACATTGTGTTTCCAGGTCTTTGAGATAAGGGAATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | TCAAAATCACAGAGATCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCTTCGATCCTGGATCCTaGAGTAAAGAGGCCAAACTT | + |
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Preference number: 4 (lower is better) Translates to: SKSQRSTSLCFLNTEIKGFDPGS*SKEAKL Trigger: AAGTTTGGCCTCTTTACTCCAGGATCCAGGATCGAA...GCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | CTAAAAGTACAAATGGATGTCACAGACAAGGAATCTGACAGTTTGACATCCCCATTCTCTGGGGGAGAATaGATGTACTCCCATCTTGCT | + |
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Preference number: 4 (lower is better) Translates to: LKVQMDVTDKESDSLTSPFSGGE*MYSHLA Trigger: AGCAAGATGGGAGTACATGCATTCTCCCCCAGAGAA...TGGGGATGTCAAACTGTCAGATTCCTTGTCTGTGACATCCATTTGTACTTTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | ACATTCCCTTATCTCAAAGACCTGGAAACACAATGTCAAACTGACTGGTCACAGTCCTTTAGAGTACGGTaGAAATGGACAGCATCCTCT | + |
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Preference number: 4 (lower is better) Translates to: TFPYLKDLETQCQTDWSQSFRVR*KWTASS Trigger: AGAGGATGCTGTCCATTTCCACCGTACTCTAAAGGA...CTGTGACCAGTCAGTTTGACATTGTGTTTCCAGGTCTTTGAGATAAGGGAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR GCA 90 bp | CTAAAAGTACAAATGGATGTCACAGACAAGGAATCTGACAGTTTGACATCCCCATCTCATTTGGTTCGCTaGTTCCTCAGAAAGATTCCC | + |
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Preference number: 4 (lower is better) Translates to: LKVQMDVTDKESDSLTSPSHLVR*FLRKIP Trigger: GGGAATCTTTCTGAGGAAGCAGCGAACCAAATGAGA...TGGGGATGTCAAACTGTCAGATTCCTTGTCTGTGACATCCATTTGTACTTTTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | ACATTCCCTTATCTCAAAGACCTGGAAACACAATGTCAAACTGACTGGTCACAGGCGCATAAGGATTCTTaGGGTGAATCACAGAACTTA | + |
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Preference number: 4 (lower is better) Translates to: TFPYLKDLETQCQTDWSQAHKDS*GESQNL Trigger: TAAGTTCTGTGATTCACCCCAAGAATCCTTATGCGC...CTGTGACCAGTCAGTTTGACATTGTGTTTCCAGGTCTTTGAGATAAGGGAATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CCA 90 bp | AAAGTTCCCAAGAAGGGCATCCTGACTGAACTAATGAAGATAAAATGTATTCCCAGTGCTTCTTCACAATaGGAACATAGGAAGGGACCA | + |
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Preference number: 4 (lower is better) Translates to: KVPKKGILTELMKIKCIPSASSQ*EHRKGP Trigger: TGGTCCCTTCCTATGTTCCCATTGTGAAGAAGCACT...GGGAATACATTTTATCTTCATTAGTTCAGTCAGGATGCCCTTCTTGGGAACTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS GCA 90 bp | CATCTCCGCCCGCTGCACGTGCCCAAAGGCGGCGGCTGCCAGCCCTaGCAACCCCGCCAGCGTCGCGGCCAGCCGGGTCCCCAGCCCGGA | + |
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Preference number: 5 (lower is better) Translates to: HLRPLHVPKGGGCQP*QPRQRRGQPGPQPG Trigger: TCCGGGCTGGGGACCCGGCTGGCCGCGACGCTGGCGGGGTTGGCAGGGCTGGCAGCCGCCGCCTTTGGGCACGTGCAGCGGGCGGAGATG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS GCA 90 bp | CTTGGGCACCATCTCCGCCCGCTGCACGTGCCCAAAGGCGGCGGCTaGCAGCCCTGCCAACCCCGCCAGCGTCGCGGCCAGCCGGGTCCC | + |
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Preference number: 5 (lower is better) Translates to: LGHHLRPLHVPKGGG*QPCQPRQRRGQPGP Trigger: GGGACCCGGCTGGCCGCGACGCTGGCGGGGTTGGCAGGGCTGGCAGCCGCCGCCTTTGGGCACGTGCAGCGGGCGGAGATGGTGCCCAAG 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS CCA 90 bp | CCTCCTCCCGCCGTCCAGGTGAGGGGCTCCGCGCCCCCGAGCTCTTaGGCACCATCTCCGCCCGCTGCACGTGCCCAAAGGCGGCGGCTG | + |
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Preference number: 5 (lower is better) Translates to: PPPAVQVRGSAPPSS*APSPPAARAQRRRL Trigger: CAGCCGCCGCCTTTGGGCACGTGCAGCGGGCGGAGATGGTGCCCAAGAGCTCGGGGGCGCGGAGCCCCTCACCTGGACGGCGGGAGGAGG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS TCA 90 bp | CCGGCCTCCTCCGCAGCTCCCGCAGCTCGGTCACCGGCGAGGACATaGAGGTGCTGCAGCGGCGGGCCAGCTCGTCCCCGTCCTCCTCCC | + |
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Preference number: 5 (lower is better) Translates to: PASSAAPAARSPART*RCCSGGPARPRPPP Trigger: GGGAGGAGGACGGGGACGAGCTGGCCCGCCGCTGCAGCACCTTCATGTCCTCGCCGGTGACCGAGCTGCGGGAGCTGCGGAGGAGGCCGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS GCA 90 bp | CCACCGGTCCACAGTGAAGTCGGCAACGCCATCTACCTGCGCCAGTaGCCGACACACCTGAGCCTGGGTCTCCATAATCATCAGCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: PPVHSEVGNAIYLRQ*PTHLSLGLHNHQLH Trigger: ATGGAGCTGATGATTATGGAGACCCAGGCTCAGGTGTGTCGGGCACTGGCGCAGGTAGATGGCGTTGCCGACTTCACTGTGGACCGGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CAA 90 bp | TCAAAATCACAGAGATCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCCGCGCCCCCGAGCTCTaGGGCACCATCTCCGCCCGC | + |
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Preference number: 5 (lower is better) Translates to: SKSQRSTSLCFLNTEIKGRAPEL*GTISAR Trigger: GCGGGCGGAGATGGTGCCCAAGAGCTCGGGGGCGCG...GCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGATCTCTGTGATTTTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS TCA 90 bp | GTGAAGTCGGCAACGCCATCTACCTGCGCCAGTGCCCGACACACCTaGGCCTGGGTCTCCATAATCATCAGCTCCATCTTGGTCTTCATG | + |
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Preference number: 5 (lower is better) Translates to: VKSATPSTCASARHT*AWVSIIISSILVFM Trigger: CATGAAGACCAAGATGGAGCTGATGATTATGGAGACCCAGGCTCAGGTGTGTCGGGCACTGGCGCAGGTAGATGGCGTTGCCGACTTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CAA 90 bp | TCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAAACATCACCACGGACGGAAAGCCTCCTCCTaGGAGGGGGAGTCAAGATCG | + |
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Preference number: 5 (lower is better) Translates to: STSLCFLNTEIKGKHHHGRKASS*EGESRS Trigger: CGATCTTGACTCCCCCTCCAAGGAGGAGGCTTTCCG...TCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS CCA 90 bp | TCGCAAGCTTCCTTTAGAGTACGGTGGAAATGGACAGCATCCTCTTaGTTCAAGTATGTCGGTGTGAGGTCACAGCCACCCCCAAACCAC | + |
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Preference number: 5 (lower is better) Translates to: SQASFRVRWKWTASS*FKYVGVRSQPPPNH Trigger: GTGGTTTGGGGGTGGCTGTGACCTCACACCGACATACTTGAACCAAGAGGATGCTGTCCATTTCCACCGTACTCTAAAGGAAGCTTGCGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CAA 90 bp | TCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAAACATCACCACGGAATCATCAGCTCCATCTaGGTCTTCATGTCCTCCGGC | + |
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Preference number: 5 (lower is better) Translates to: STSLCFLNTEIKGKHHHGIISSI*VFMSSG Trigger: GCCGGAGGACATGAAGACCAAGATGGAGCTGATGAT...TCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CAA 90 bp | TCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAAACATCACCACGGAATGGACAGCATCCTCTaGGTTCAAGTATGTCGGTGT | + |
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Preference number: 5 (lower is better) Translates to: STSLCFLNTEIKGKHHHGMDSIL*VQVCRC Trigger: ACACCGACATACTTGAACCAAGAGGATGCTGTCCAT...TCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS TCA 90 bp | AGTGTGTGTTACCGTCAGCTTCCTCTACTTCAAAGTATCTGTAGTTaGAATGCATGGTGGGCGCATAAGGATTCTTGGGGTGAATCACAG | + |
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Preference number: 5 (lower is better) Translates to: SVCYRQLPLLQSICS*NAWWAHKDSWGESQ Trigger: CTGTGATTCACCCCAAGAATCCTTATGCGCCCACCATGCATTTCAACTACAGATACTTTGAAGTAGAGGAAGCTGACGGTAACACACACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CAA 90 bp | TCCACCAGCCTCTGCTTCCTGAATACTGAGATTAAAGGCAAACATCACCACGGAAGAATTTCAGCTTCTTaGGAATTCTCTGGGGGAGAA | + |
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Preference number: 5 (lower is better) Translates to: STSLCFLNTEIKGKHHHGRISAS*EFSGGE Trigger: TTCTCCCCCAGAGAATTCCAAAGAAGCTGAAATTCT...TCCGTGGTGATGTTTGCCTTTAATCTCAGTATTCAGGAAGCAGAGGCTGGTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CAA 90 bp | TTTTCTTACCCTAAAAGTGGCAAACACAATCACATACATCCAACATATTCCAGGAGTGCACCCAGTCCTTaGGATGGCGCAACACTTCCA | + |
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Preference number: 5 (lower is better) Translates to: FSYPKSGKHNHIHPTYSRSAPSP*DGATLP Trigger: TGGAAGTGTTGCGCCATCCAAAGGACTGGGTGCACT...CCTGGAATATGTTGGATGTATGTGATTGTGTTTGCCACTTTTAGGGTAAGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS-3UTR CAA 90 bp | CTAAAAGTACAAATGGATGTCACAGACAAGGAATCTGACAGTTTGACATCCCCATTCGTCTTCAGAGTTTaGCCTCTGCCTCTCATTTGG | + |
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Preference number: 5 (lower is better) Translates to: LKVQMDVTDKESDSLTSPFVFRV*PLPLIW Trigger: CCAAATGAGAGGCAGAGGCAAAACTCTGAAGACGAA...TGGGGATGTCAAACTGTCAGATTCCTTGTCTGTGACATCCATTTGTACTTTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS GCA 72 bp | CATCTCCGCCCGCTGCACGTGCCCAAAGGCGGCGGCTaGCAGCCCTGCCAACCCCGCCAGCGTCGCGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: HLRPLHVPKGGG*QPCQPRQRRGQ Trigger: CTGGCCGCGACGCTGGCGGGGTTGGCAGGGCTGGCAGCCGCCGCCTTTGGGCACGTGCAGCGGGCGGAGATG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS TCA 72 bp | TCCGCAGCTCCCGCAGCTCGGTCACCGGCGAGGACATaGAGGTGCTGCAGCGGCGGGCCAGCTCGTCCCCGT | + |
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Preference number: 6 (lower is better) Translates to: SAAPAARSPART*RCCSGGPARPR Trigger: ACGGGGACGAGCTGGCCCGCCGCTGCAGCACCTTCATGTCCTCGCCGGTGACCGAGCTGCGGGAGCTGCGGA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS TCA 72 bp | GCAACGCCATCTACCTGCGCCAGTGCCCGACACACCTaGGCCTGGGTCTCCATAATCATCAGCTCCATCTTG | + |
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Preference number: 6 (lower is better) Translates to: ATPSTCASARHT*AWVSIIISSIL Trigger: CAAGATGGAGCTGATGATTATGGAGACCCAGGCTCAGGTGTGTCGGGCACTGGCGCAGGTAGATGGCGTTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS GCA 72 bp | CACAGTGAAGTCGGCAACGCCATCTACCTGCGCCAGTaGCCGACACACCTGAGCCTGGGTCTCCATAATCAT | + |
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Preference number: 6 (lower is better) Translates to: HSEVGNAIYLRQ*PTHLSLGLHNH Trigger: ATGATTATGGAGACCCAGGCTCAGGTGTGTCGGGCACTGGCGCAGGTAGATGGCGTTGCCGACTTCACTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS CCA 72 bp | TGGGGGTGTAGGAGTCATCGCAGTGCTTCTTCACAATaGGAACATAGGAAGGGACCACAGCCTCAGCACACG | + |
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Preference number: 6 (lower is better) Translates to: WGCRSHRSASSQ*EHRKGPQPQHT Trigger: CGTGTGCTGAGGCTGTGGTCCCTTCCTATGTTCCCATTGTGAAGAAGCACTGCGATGACTCCTACACCCCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS CCA 72 bp | TCCTTTAGAGTACGGTGGAAATGGACAGCATCCTCTTaGTTCAAGTATGTCGGTGTGAGGTCACAGCCACCC | + |
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Preference number: 6 (lower is better) Translates to: SFRVRWKWTASS*FKYVGVRSQPP Trigger: GGGTGGCTGTGACCTCACACCGACATACTTGAACCAAGAGGATGCTGTCCATTTCCACCGTACTCTAAAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS TCA 72 bp | CTCATTTGGTTCGCTGCTTCCTCAGAAAGATTCCCATaGACGACGGAAATGCTCACCCCGGCCTTTTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: LIWFAASSERFP*TTEMLTPAFSN Trigger: GTTTGAAAAGGCCGGGGTGAGCATTTCCGTCGTTCATGGGAATCTTTCTGAGGAAGCAGCGAACCAAATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS CAA 90 bp | ATCAAGATACTTTCGATCCTGGATCCTGGAGTAAAGAGGCCAAACTaGGTGCCCCGATCATACAACAGATTAAACTCCACATACCGCCCT | + |
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Preference number: 6 (lower is better) Translates to: IKILSILDPGVKRPN*VPRSYNRLNSTYRP Trigger: AGGGCGGTATGTGGAGTTTAATCTGTTGTATGATCGGGGCACCAAGTTTGGCCTCTTTACTCCAGGATCCAGGATCGAAAGTATCTTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS TCA 72 bp | TACCGTCAGCTTCCTCTACTTCAAAGTATCTGTAGTTaGAATGCATGGTGGGCGCATAAGGATTCTTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: YRQLPLLQSICS*NAWWAHKDSWG Trigger: ACCCCAAGAATCCTTATGCGCCCACCATGCATTTCAACTACAGATACTTTGAAGTAGAGGAAGCTGACGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS CAA 90 bp | CAATTTACTATCTTTCGTCTTCAGAGTTTTGCCTCTGCCTCTCATTaGGTTCGCTGCTTCCTCAGAAAGATTCCCATGAACGACGGAAAT | + |
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Preference number: 6 (lower is better) Translates to: QFTIFRLQSFASASH*VRCFLRKIPMNDGN Trigger: ATTTCCGTCGTTCATGGGAATCTTTCTGAGGAAGCAGCGAACCAAATGAGAGGCAGAGGCAAAACTCTGAAGACGAAAGATAGTAAATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS GCA 72 bp | AGAATTTCAGCTTCTTTGGAATTCTCTGGGGGAGAATaGATGTACTCCCATCTTGCTGTTAGAGGTAAAGAC | + |
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Preference number: 6 (lower is better) Translates to: RISASLEFSGGE*MYSHLAVRGKD Trigger: GTCTTTACCTCTAACAGCAAGATGGGAGTACATGCATTCTCCCCCAGAGAATTCCAAAGAAGCTGAAATTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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| CDS CAA 72 bp | GTAAATGGCAATTTACTATCTTTCGTCTTCAGAGTTTaGCCTCTGCCTCTCATTTGGTTCGCTGCTTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: VNGNLLSFVFRV*PLPLIWFAASS Trigger: TGAGGAAGCAGCGAACCAAATGAGAGGCAGAGGCAAAACTCTGAAGACGAAAGATAGTAAATTGCCATTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060077.7 |
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