RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPNE6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022212

Ensembl transcript IDs: ENSMUST00000074225.11, ENSMUST00000163767.8, ENSMUST00000165262.8, ENSMUST00000165725.8, ENSMUST00000171643.2

Found 286 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTaGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAG +
Preference number: 1 (lower is better)
Translates to: GTRAHHSLPGPAGHH*SKMQRHRSLESQGQ
Trigger: CTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR GCA 90 bp CCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATaGAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACC +
Preference number: 1 (lower is better)
Translates to: PITHFRDPQGTTGPK*RDTGHWNHKVSTGT
Trigger: GGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
3UTR GCA 90 bp CCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATaGAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACT +
Preference number: 1 (lower is better)
Translates to: PITHFRDPQGTTGPK*RDTGHWNHKVSTGT
Trigger: AGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
3UTR CCA 90 bp TGGAGGAAGTTATTGAGGGTCCTCAGAGTTGAGGGATATCGGGCTTaGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCA +
Preference number: 1 (lower is better)
Translates to: WRKLLRVLRVEGYRA*RDGTRAHHSLPGPA
Trigger: TGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAGGACCCTCAATAACTTCCTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR CCA 90 bp GACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTaGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGT +
Preference number: 1 (lower is better)
Translates to: DPQGTTGPKCRDTGH*NHKVSTGTERLKGC
Trigger: ACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
3UTR TCA 90 bp TGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACCTaGGAGGAGCAGGACAGCAAAAACACCACCACCAGCATTACGCCA +
Preference number: 1 (lower is better)
Translates to: CRDTGHWNHKVSTGT*EEQDSKNTTTSITP
Trigger: TGGCGTAATGCTGGTGGTGGTGTTTTTGCTGTCCTGCTCCTCTCAGGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
3UTR TCA 90 bp CAGCTTGTGGGCTCTGAAGGTAAGTTGCACATAGTCGTTGGTACCTaGTACCTCCTCAGCCACAATCGTGATAGTAGACTTGCCCGCCGT +
Preference number: 1 (lower is better)
Translates to: QLVGSEGKLHIVVGT*YLLSHNRDSRLARR
Trigger: ACGGCGGGCAAGTCTACTATCACGATTGTGGCTGAGGAGGTATCAGGTACCAACGACTATGTGCAACTTACCTTCAGAGCCCACAAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165725.8
3UTR-3UTR TCA 90 bp GAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTGGTCAGCACAGGCACTaGGAGACTGAAGGGGTGTTG +
Preference number: 2 (lower is better)
Translates to: EMGPGPITHFRDPQGTTGGQHRH*ETEGVL
Trigger: CAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACC...ACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
3UTR-3UTR TCA 90 bp AGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCTCAGAAGCTCTGCTTTaGACACCTTTTGTATCCCCC +
Preference number: 2 (lower is better)
Translates to: RWDQGPSLTSGTRRAPLVSEALL*TPFVSP
Trigger: GGGGGATACAAAAGGTGTTCAAAGCAGAGCTTCTGA...GACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
3UTR-3UTR CCA 90 bp GAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTAGAGACACAGGTCACTaGAATCACAAGGTCAGCACA +
Preference number: 2 (lower is better)
Translates to: EMGPGPITHFRDPQGTTGRDTGH*NHKVST
Trigger: TGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCT...ACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR-3UTR CCA 90 bp GGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTAGAGACACAGGTCACTaGAATCACAAGGTCAGCACA +
Preference number: 2 (lower is better)
Translates to: GEMGPGPITHFRDPQGTTRDTGH*NHKVST
Trigger: TGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCT...AGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR-3UTR CCA 90 bp GATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGAGAGACACAGGTCACTaGAATCACAAGGTCAGCACA +
Preference number: 2 (lower is better)
Translates to: DIGLGEMGPGPITHFRDPRDTGH*NHKVST
Trigger: TGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCT...CGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR-3UTR TCA 90 bp CCTGAGAGGAGCAGGACAGCAAAAACACCACCACCAGCATTACGCCAGCCAAGATCCCCCAGAACTCACTaGGAGACTGAAGGGGTGTTG +
Preference number: 2 (lower is better)
Translates to: PERSRTAKTPPPALRQPRSPRTH*ETEGVL
Trigger: CAACACCCCTTCAGTCTCTCAGTGAGTTCTGGGGGA...TCTTGGCTGGCGTAATGCTGGTGGTGGTGTTTTTGCTGTCCTGCTCCTCTCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
3UTR-3UTR GCA 90 bp GACTTGCCCGCCGTCTTCCCATTCTTCAGCAGTAATGGCTTAGTGACCTTGGTTTGTGGCTGTAGTGTATaGATCTGCCCTGGCCAAGGC +
Preference number: 2 (lower is better)
Translates to: DLPAVFPFFSSNGLVTLVCGCSV*ICPGQG
Trigger: GCCTTGGCCAGGGCAGATGCATACACTACAGCCACA...AACCAAGGTCACTAAGCCATTACTGCTGAAGAATGGGAAGACGGCGGGCAAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165725.8
3UTR-3UTR GCA 90 bp TGGTTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGACCACTGGTCCAAAATaGAGAGACACAGGTCACTGG +
Preference number: 2 (lower is better)
Translates to: WFLLFTSIKSQPLEEVIETTGPK*RDTGHW
Trigger: CCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGT...CTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR-3UTR CCA 90 bp TGGTTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGAGAGACACAGGTCACTaGAATCACAAGGTCAGCACA +
Preference number: 2 (lower is better)
Translates to: WFLLFTSIKSQPLEEVIERDTGH*NHKVST
Trigger: TGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCT...CTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR CCA 72 bp GCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTaGTCCAAAATGCAGAGACACAGGTCACTGGAATCA +
Preference number: 3 (lower is better)
Translates to: AHHSLPGPAGHH*SKMQRHRSLES
Trigger: TGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR TCA 72 bp ACAGGTCACTGGAATCACAAGGTCAGCACAGGCACCTaGGAGGAGCAGGACAGCAAAAACACCACCACCAGC +
Preference number: 3 (lower is better)
Translates to: TGHWNHKVSTGT*EEQDSKNTTTS
Trigger: GCTGGTGGTGGTGTTTTTGCTGTCCTGCTCCTCTCAGGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
3UTR CCA 72 bp TTATTGAGGGTCCTCAGAGTTGAGGGATATCGGGCTTaGAGAGATGGGACCAGGGCCCATCACTCACTTCCG +
Preference number: 3 (lower is better)
Translates to: LLRVLRVEGYRA*RDGTRAHHSLP
Trigger: CGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAGGACCCTCAATAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR CCA 72 bp GGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTaGAATCACAAGGTCAGCACAGGCACTGAGAGACTG +
Preference number: 3 (lower is better)
Translates to: GTTGPKCRDTGH*NHKVSTGTERL
Trigger: CAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
3UTR GCA 72 bp AAAGACAGAGGTAGAGGGGAGTGTGGCTGTAGTGTATaGATCTGCCCTGGCCAAGGCTATAGAGTCCATAAG +
Preference number: 3 (lower is better)
Translates to: KDRGRGECGCSV*ICPGQGYRVHK
Trigger: CTTATGGACTCTATAGCCTTGGCCAGGGCAGATGCATACACTACAGCCACACTCCCCTCTACCTCTGTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165725.8
3UTR CCA 72 bp GCAAAAACACCACCACCAGCATTACGCCAGCCAAGATaGGCTATTCAGAAGCTCTGCTTTGAACACCTTTTG +
Preference number: 3 (lower is better)
Translates to: AKTPPPALRQPR*AIQKLCFEHLL
Trigger: CAAAAGGTGTTCAAAGCAGAGCTTCTGAATAGCCCATCTTGGCTGGCGTAATGCTGGTGGTGGTGTTTTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
3UTR TCA 72 bp GGCTCTGAAGGTAAGTTGCACATAGTCGTTGGTACCTaGTACCTCCTCAGCCACAATCGTGATAGTAGACTT +
Preference number: 3 (lower is better)
Translates to: GSEGKLHIVVGT*YLLSHNRDSRL
Trigger: AAGTCTACTATCACGATTGTGGCTGAGGAGGTATCAGGTACCAACGACTATGTGCAACTTACCTTCAGAGCC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165725.8
CDS-3UTR TCA 90 bp GGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAATGGGCTGTCGGGGGCTaGGGCAGTGCAGAGACTGGC +
Preference number: 4 (lower is better)
Translates to: GTRAHHSLPGPAGHHWSKWAVGG*GSAETG
Trigger: GCCAGTCTCTGCACTGCCTCAGCCCCCGACAGCCCA...TTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACCGGTCCAGCAGGCCATaGCAGGACACCCGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: WRDGTRAHHSLPGPAGHHRSSRP*QDTRSS
Trigger: GGAGCTGCGGGTGTCCTGCCATGGCCTGCTGGACCG...GTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAACGGTCCAGCAGGCCATaGCAGGACACCCGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: GTRAHHSLPGPAGHHWSKRSSRP*QDTRSS
Trigger: GGAGCTGCGGGTGTCCTGCCATGGCCTGCTGGACCG...TTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp ATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCATCGTGGCTTGGCCGGTaGTCTGCTCTCGCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: MGPGPITHFRDPQGTTGPSWLGR*SALAGL
Trigger: CAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGA...TGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGTGGGCTGTCGGGGGCTaGGGCAGTGCAGAGACTGGC +
Preference number: 4 (lower is better)
Translates to: DIGLGEMGPGPITHFRDPWAVGG*GSAETG
Trigger: GCCAGTCTCTGCACTGCCTCAGCCCCCGACAGCCCA...CGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp ATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCACGGGGGCTGAGGCAGTaGAGAGACTGGCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: MGPGPITHFRDPQGTTGPRGLRQ*RDWLLL
Trigger: AAGGAGCAGCCAGTCTCTGCACTGCCTCAGCCCCCG...TGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp TGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAGCTTGGCCGGTGCTCTaGTCTCGCTGGGCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: WDQGPSLTSGTRRAPLVQAWPVL*SRWAGS
Trigger: TGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGC...TTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp AGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGGCTTGGCCGGTGCTCTaGTCTCGCTGGGCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: RDGTRAHHSLPGPAGHHWAWPVL*SRWAGS
Trigger: TGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGC...CCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCCGGTCCAGCAGGCCATaGCAGGACACCCGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: ISGLERWDQGPSLTSGTRRSSRP*QDTRSS
Trigger: GGAGCTGCGGGTGTCCTGCCATGGCCTGCTGGACCG...GCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATAT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACCAAGGACAGGCGGAATaGCTCCCAGCTGGGGTTCAG +
Preference number: 4 (lower is better)
Translates to: WRDGTRAHHSLPGPAGHHQGQAE*LPAGVQ
Trigger: CTGAACCCCAGCTGGGAGCCATTCCGCCTGTCCTTG...GTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCGCTGGGAGTCATAGCTaGCGTGGAGGGCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: ISGLERWDQGPSLTSGTRAGSHS*RGGPGS
Trigger: GCTCCCAGGCCCTCCACGCCAGCTATGACTCCCAGC...GCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp AGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGATGGATGCGGCTTTGTaGGCGTGTCTCGGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: RDGTRAHHSLPGPAGHHWMDAAL*ACLGPA
Trigger: TGCTGGACCGAGACACGCTCACAAAGCCGCATCCAT...CCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGTGGGCTGTCGGGGGCTaGGGCAGTGCAGAGACTGGC +
Preference number: 4 (lower is better)
Translates to: VEGYRAWRDGTRAHHSLPWAVGG*GSAETG
Trigger: GCCAGTCTCTGCACTGCCTCAGCCCCCGACAGCCCA...CGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp TGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACGGCGGTAGGAGGCTATaGCCCCTGAGATCTCTTCAC +
Preference number: 4 (lower is better)
Translates to: WRDGTRAHHSLPGPAGHHGGRRL*PLRSLH
Trigger: GTGAAGAGATCTCAGGGGTCATAGCCTCCTACCGCC...GTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp TGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACAGTGCAGAGACTGGCTaGTCCTTGGGTCCCCATTGG +
Preference number: 4 (lower is better)
Translates to: WRDGTRAHHSLPGPAGHHSAETG*SLGPHW
Trigger: CCAATGGGGACCCAAGGAGCAGCCAGTCTCTGCACT...GTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGACAATGTCACGGGCTaGAGGTACCCCCTTTGGGCA +
Preference number: 4 (lower is better)
Translates to: GEMGPGPITHFRDPQGTTDNVTG*RYPLWA
Trigger: TGCCCAAAGGGGGTACCTGCAGCCCGTGACATTGTC...AGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp TGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAGACAATGTCACGGGCTaGAGGTACCCCCTTTGGGCA +
Preference number: 4 (lower is better)
Translates to: WDQGPSLTSGTRRAPLVQDNVTG*RYPLWA
Trigger: TGCCCAAAGGGGGTACCTGCAGCCCGTGACATTGTC...TTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAAGACTGGCTGCTCCTTaGGTCCCCATTGGAGGCAGT +
Preference number: 4 (lower is better)
Translates to: GTRAHHSLPGPAGHHWSKRLAAP*VPIGGS
Trigger: ACTGCCTCCAATGGGGACCCAAGGAGCAGCCAGTCT...TTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAACTGCTCTCGCTGGGCTaGTTCAGCCACACGGTTGAT +
Preference number: 4 (lower is better)
Translates to: GTRAHHSLPGPAGHHWSKLLSLG*FSHTVD
Trigger: ATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAG...TTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGGTGCTCTGCTCTCGCTaGGCTGGTTCAGCCACACGG +
Preference number: 4 (lower is better)
Translates to: TRAHHSLPGPAGHHWSKMVLCSR*AGSATR
Trigger: CCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCAC...CATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAACTCTACCACCTGCCGTaGCACCTCTGCCAGGACACA +
Preference number: 4 (lower is better)
Translates to: GPGPITHFRDPQGTTGPKLYHLP*HLCQDT
Trigger: TGTGTCCTGGCAGAGGTGCCACGGCAGGTGGTAGAG...TTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAAATGGATGCGGCTTTGTaGGCGTGTCTCGGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: GPGPITHFRDPQGTTGPKMDAAL*ACLGPA
Trigger: TGCTGGACCGAGACACGCTCACAAAGCCGCATCCAT...TTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGATCCCACTGCATCTCCTaGCCAGGGTTTGCGGTCCCC +
Preference number: 4 (lower is better)
Translates to: EGYRAWRDGTRAHHSLPGSHCIS*PGFAVP
Trigger: GGGGACCGCAAACCCTGGGCAGGAGATGCAGTGGGA...TCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACGGGGGCTGAGGCAGTaGAGAGACTGGCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: AHHSLPGPAGHHWSKMQRRGLRQ*RDWLLL
Trigger: AAGGAGCAGCCAGTCTCTGCACTGCCTCAGCCCCCG...TCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp AGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCGGGGGCTGAGGCAGTaGAGAGACTGGCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: RDIGLGEMGPGPITHFRDRGLRQ*RDWLLL
Trigger: AAGGAGCAGCCAGTCTCTGCACTGCCTCAGCCCCCG...GTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGTCGTGGCTTGGCCGGTaGTCTGCTCTCGCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: VEGYRAWRDGTRAHHSLPSWLGR*SALAGL
Trigger: CAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGA...CGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp CATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACTCGTGGCTTGGCCGGTaGTCTGCTCTCGCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: HHSLPGPAGHHWSKMQRHSWLGR*SALAGL
Trigger: CAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGA...GTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCAAGGACAGGCGGAATaGCTCCCAGCTGGGGTTCAG +
Preference number: 4 (lower is better)
Translates to: GISGLERWDQGPSLTSGTQGQAE*LPAGVQ
Trigger: CTGAACCCCAGCTGGGAGCCATTCCGCCTGTCCTTG...GGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAAGGCAGTGCAGAGACTaGCTGCTCCTTGGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: YRAWRDGTRAHHSLPGPARQCRD*LLLGSP
Trigger: TGGGGACCCAAGGAGCAGCCAGTCTCTGCACTGCCT...TGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAACTGCTCTCGCTGGGCTaGTTCAGCCACACGGTTGAT +
Preference number: 4 (lower is better)
Translates to: GPGPITHFRDPQGTTGPKLLSLG*FSHTVD
Trigger: ATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAG...TTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCTCTACCACCTGCCGTaGCACCTCTGCCAGGACACA +
Preference number: 4 (lower is better)
Translates to: DIGLGEMGPGPITHFRDPLYHLP*HLCQDT
Trigger: TGTGTCCTGGCAGAGGTGCCACGGCAGGTGGTAGAG...CGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp ATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAGGAGGCTATGACCCCTaGGATCTCTTCACATTCAGG +
Preference number: 4 (lower is better)
Translates to: MGPGPITHFRDPQGTTGPGGYDP*DLFTFR
Trigger: CCTGAATGTGAAGAGATCTCAGGGGTCATAGCCTCC...TGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGAGGCTATGACCCCTaGGATCTCTTCACATTCAGG +
Preference number: 4 (lower is better)
Translates to: GEMGPGPITHFRDPQGTTGGYDP*DLFTFR
Trigger: CCTGAATGTGAAGAGATCTCAGGGGTCATAGCCTCC...AGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTTCACCACACCGTCAGTaGGCACCAGCAGTACTGAAT +
Preference number: 4 (lower is better)
Translates to: GEMGPGPITHFRDPQGTTSPHRQ*APAVLN
Trigger: ATTCAGTACTGCTGGTGCTCACTGACGGTGTGGTGA...AGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTCAGCTGCACAAAGAATaGAAGGACAGGCGGAATGGC +
Preference number: 4 (lower is better)
Translates to: GEMGPGPITHFRDPQGTTQLHKE*KDRRNG
Trigger: GCCATTCCGCCTGTCCTTGCATTCTTTGTGCAGCTG...AGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GTAGAGGGGAGTGTGGCTGTAGTGTATGCATCTGCCCTGGCCAAGGCTATAGAGCGGTCCAGCAGGCCATaGCAGGACACCCGCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VEGSVAVVYASALAKAIERSSRP*QDTRSS
Trigger: GGAGCTGCGGGTGTCCTGCCATGGCCTGCTGGACCG...CTCTATAGCCTTGGCCAGGGCAGATGCATACACTACAGCCACACTCCCCTCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165725.8
CDS-3UTR CCA 90 bp GAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACAAGGACAGGCGGAATaGCTCCCAGCTGGGGTTCAG +
Preference number: 4 (lower is better)
Translates to: EGYRAWRDGTRAHHSLPGQGQAE*LPAGVQ
Trigger: CTGAACCCCAGCTGGGAGCCATTCCGCCTGTCCTTG...TCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGTCCTCAGAGTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCCAAGGACAGGCGGAATaGCTCCCAGCTGGGGTTCAG +
Preference number: 4 (lower is better)
Translates to: GSSELRDIGLGEMGPGPIQGQAE*LPAGVQ
Trigger: CTGAACCCCAGCTGGGAGCCATTCCGCCTGTCCTTG...GATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAGGACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGACTGGCTGCTCCTTaGGTCCCCATTGGAGGCAGT +
Preference number: 4 (lower is better)
Translates to: ISGLERWDQGPSLTSGTRRLAAP*VPIGGS
Trigger: ACTGCCTCCAATGGGGACCCAAGGAGCAGCCAGTCT...GCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTGGAGACCTCAAAGTTTaGGGGGATTCGAGCTCCGAA +
Preference number: 4 (lower is better)
Translates to: EMGPGPITHFRDPQGTTGGDLKV*GDSSSE
Trigger: TTCGGAGCTCGAATCCCCCCAAACTTTGAGGTCTCC...ACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp AGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCGGAGACCTCAAAGTTTaGGGGGATTCGAGCTCCGAA +
Preference number: 4 (lower is better)
Translates to: RWDQGPSLTSGTRRAPLVGDLKV*GDSSSE
Trigger: TTCGGAGCTCGAATCCCCCCAAACTTTGAGGTCTCC...GACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCGAATACTTCGTGGCTTaGCCGGTGCTCTGCTCTCGC +
Preference number: 4 (lower is better)
Translates to: GISGLERWDQGPSLTSGTEYFVA*PVLCSR
Trigger: GCGAGAGCAGAGCACCGGCCAAGCCACGAAGTATTC...GGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGTACTGAATACTTCGTaGCTTGGCCGGTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: SGLERWDQGPSLTSGTRRVLNTS*LGRCSA
Trigger: AGCAGAGCACCGGCCAAGCCACGAAGTATTCAGTAC...CCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAACTGAAGGGCACAAACTaGACAATGTCACGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: GTRAHHSLPGPAGHHWSKLKGTN*TMSRAA
Trigger: TGCAGCCCGTGACATTGTCCAGTTTGTGCCCTTCAG...TTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp TGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAGTGACCTTGGTTTGTaGCACAATCTGGCCCAAGGT +
Preference number: 4 (lower is better)
Translates to: WDQGPSLTSGTRRAPLVQSDLGL*HNLAQG
Trigger: ACCTTGGGCCAGATTGTGTCACAAACCAAGGTCACT...TTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp TGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAATCTGGCAGCCACCCATaGTATAATCCAGGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: WDQGPSLTSGTRRAPLVQSGSHP*YNPGRC
Trigger: ACACCTTCCTGGATTATATCATGGGTGGCTGCCAGA...TTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp CAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCTGGGCTGTCGGGGGCTaGGGCAGTGCAGAGACTGGC +
Preference number: 4 (lower is better)
Translates to: QGTTGPKCRDTGHWNHKVWAVGG*GSAETG
Trigger: GCCAGTCTCTGCACTGCCTCAGCCCCCGACAGCCCA...GACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp AGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACGGCGGTAGGAGGCTATaGCCCCTGAGATCTCTTCAC +
Preference number: 4 (lower is better)
Translates to: RDIGLGEMGPGPITHFRDGGRRL*PLRSLH
Trigger: GTGAAGAGATCTCAGGGGTCATAGCCTCCTACCGCC...GTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp AGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCTTTGCGGTCCCCTCTTaGATTTCCTGGAATGTGCTG +
Preference number: 4 (lower is better)
Translates to: RWDQGPSLTSGTRRAPLVFAVPS*ISWNVL
Trigger: CAGCACATTCCAGGAAATGCAAGAGGGGACCGCAAA...GACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp AGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACAGTGCAGAGACTGGCTaGTCCTTGGGTCCCCATTGG +
Preference number: 4 (lower is better)
Translates to: RDIGLGEMGPGPITHFRDSAETG*SLGPHW
Trigger: CCAATGGGGACCCAAGGAGCAGCCAGTCTCTGCACT...GTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGAAGATACCGCCCACTGTaGGCAAGGCCTGCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: EGYRAWRDGTRAHHSLPGRYRPL*ARPAGS
Trigger: ACTACCTGCAGGCCTTGCGCACAGTGGGCGGTATCT...TCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCAGCTTGGCCGGTGCTCTaGTCTCGCTGGGCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: GPAGHHWSKMQRHRSLESAWPVL*SRWAGS
Trigger: TGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGC...TGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTGTTTGTGACACAATCTaGCCCAAGGTGCACTCCGTA +
Preference number: 4 (lower is better)
Translates to: EMGPGPITHFRDPQGTTGVCDTI*PKVHSV
Trigger: TACGGAGTGCACCTTGGGCCAGATTGTGTCACAAAC...ACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp AGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCGGAATGGCTCCCAGCTaGGGTTCAGGTTGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: RWDQGPSLTSGTRRAPLVGMAPS*GSGCFS
Trigger: TGAAAAACAACCTGAACCCCAGCTGGGAGCCATTCC...GACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGAACTTGAGCGGCCTGTaGATGTCACAGCTGCACAAA +
Preference number: 4 (lower is better)
Translates to: SGLERWDQGPSLTSGTRRNLSGL*MSQLHK
Trigger: TTTGTGCAGCTGTGACATCCACAGGCCGCTCAAGTT...CCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCCCTCTTGCATTTCCTaGAATGTGCTGGTGAACTCG +
Preference number: 4 (lower is better)
Translates to: AWRDGTRAHHSLPGPAGHPSCIS*NVLVNS
Trigger: CGAGTTCACCAGCACATTCCAGGAAATGCAAGAGGG...GTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGTCCTCAGAGTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCAGACTGGCTGCTCCTTaGGTCCCCATTGGAGGCAGT +
Preference number: 4 (lower is better)
Translates to: GSSELRDIGLGEMGPGPIRLAAP*VPIGGS
Trigger: ACTGCCTCCAATGGGGACCCAAGGAGCAGCCAGTCT...GATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAGGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp AGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACAGACTGGCTGCTCCTTaGGTCCCCATTGGAGGCAGT +
Preference number: 4 (lower is better)
Translates to: RDIGLGEMGPGPITHFRDRLAAP*VPIGGS
Trigger: ACTGCCTCCAATGGGGACCCAAGGAGCAGCCAGTCT...GTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGAGAATACTTCGTGGCTTaGCCGGTGCTCTGCTCTCGC +
Preference number: 4 (lower is better)
Translates to: EGYRAWRDGTRAHHSLPGEYFVA*PVLCSR
Trigger: GCGAGAGCAGAGCACCGGCCAAGCCACGAAGTATTC...TCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACCTCTACCACCTGCCGTaGCACCTCTGCCAGGACACA +
Preference number: 4 (lower is better)
Translates to: HHSLPGPAGHHWSKMQRHLYHLP*HLCQDT
Trigger: TGTGTCCTGGCAGAGGTGCCACGGCAGGTGGTAGAG...GTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAGCTGGGAGTCATAGCTaGCGTGGAGGGCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: TRRAPLVQNAETQVTGITAGSHS*RGGPGS
Trigger: GCTCCCAGGCCCTCCACGCCAGCTATGACTCCCAGC...TGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGTCCTCAGAGTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTGAATACGTGGCTTaGCCGGTGCTCTGCTCTCGC +
Preference number: 4 (lower is better)
Translates to: GSSELRDIGLGEMGPGPITEYVA*PVLCSR
Trigger: GCGAGAGCAGAGCACCGGCCAAGCCACGTATTCAGT...GATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAGGACCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
CDS-3UTR TCA 90 bp CCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACAATGGATGCGGCTTTGTaGGCGTGTCTCGGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: PSLTSGTRRAPLVQNAETMDAAL*ACLGPA
Trigger: TGCTGGACCGAGACACGCTCACAAAGCCGCATCCAT...TGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACAGGGGTCAGACTTGCTaGACAGATCCTTGTTATCCA +
Preference number: 4 (lower is better)
Translates to: AWRDGTRAHHSLPGPAGHRGQTC*TDPCYP
Trigger: TGGATAACAAGGATCTGTTCAGCAAGTCTGACCCCT...GTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATCTCGGTACTTGGGGTTaGTACAGTCCCACTGCATCT +
Preference number: 4 (lower is better)
Translates to: DQGPSLTSGTRRAPLVQNLGTWG*YSPTAS
Trigger: AGATGCAGTGGGACTGTATCAACCCCAAGTACCGAG...ATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAACAGCACGACTGTCCCTaGGCTCTTGTAATTCTTCTT +
Preference number: 4 (lower is better)
Translates to: GTRAHHSLPGPAGHHWSKQHDCP*ALVILL
Trigger: AAGAAGAATTACAAGAGCTCAGGGACAGTCGTGCTG...TTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGGGAGGCTATGACCCCTaGGATCTCTTCACATTCAGG +
Preference number: 4 (lower is better)
Translates to: DIGLGEMGPGPITHFRDPGGYDP*DLFTFR
Trigger: CCTGAATGTGAAGAGATCTCAGGGGTCATAGCCTCC...CGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp CCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACAGGCGGTAGGAGGCTATaGCCCCTGAGATCTCTTCAC +
Preference number: 4 (lower is better)
Translates to: PSLTSGTRRAPLVQNAETGGRRL*PLRSLH
Trigger: GTGAAGAGATCTCAGGGGTCATAGCCTCCTACCGCC...TGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCTCACCACACCGTCAGTaGGCACCAGCAGTACTGAAT +
Preference number: 4 (lower is better)
Translates to: GISGLERWDQGPSLTSGTSPHRQ*APAVLN
Trigger: ATTCAGTACTGCTGGTGCTCACTGACGGTGTGGTGA...GGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp ACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGCTGCACAAAGAATaGAAGGACAGGCGGAATGGC +
Preference number: 4 (lower is better)
Translates to: TRAHHSLPGPAGHHWSKMQLHKE*KDRRNG
Trigger: GCCATTCCGCCTGTCCTTGCATTCTTTGTGCAGCTG...CATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATCAGCTGCACAAAGAATaGAAGGACAGGCGGAATGGC +
Preference number: 4 (lower is better)
Translates to: DQGPSLTSGTRRAPLVQNQLHKE*KDRRNG
Trigger: GCCATTCCGCCTGTCCTTGCATTCTTTGTGCAGCTG...ATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp AGAGGAGCAGGACAGCAAAAACACCACCACCAGCATTACGCCAGCCAAGATGGGTCCCACTGCATCTCCTaGCCAGGGTTTGCGGTCCCC +
Preference number: 4 (lower is better)
Translates to: RGAGQQKHHHQHYASQDGSHCIS*PGFAVP
Trigger: GGGGACCGCAAACCCTGGGCAGGAGATGCAGTGGGA...CCCATCTTGGCTGGCGTAATGCTGGTGGTGGTGTTTTTGCTGTCCTGCTCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp AGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGGTTGCACATAGTCGTTaGTACCTGATACCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: RDGTRAHHSLPGPAGHHWVAHSR*YLIPPQ
Trigger: CTGAGGAGGTATCAGGTACCAACGACTATGTGCAAC...CCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAGGCAGTGCAGAGACTaGCTGCTCCTTGGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: DPQGTTGPKCRDTGHWNHRQCRD*LLLGSP
Trigger: TGGGGACCCAAGGAGCAGCCAGTCTCTGCACTGCCT...GTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGTGCTCTGCTCTCGCTaGGCTGGTTCAGCCACACGG +
Preference number: 4 (lower is better)
Translates to: PAGHHWSKMQRHRSLESQVLCSR*AGSATR
Trigger: CCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCAC...TTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACTCTACCACCTGCCGTaGCACCTCTGCCAGGACACA +
Preference number: 4 (lower is better)
Translates to: GPAGHHWSKMQRHRSLESLYHLP*HLCQDT
Trigger: TGTGTCCTGGCAGAGGTGCCACGGCAGGTGGTAGAG...TGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp ACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGAGTGACCTTGGTTTGTaGCACAATCTGGCCCAAGGT +
Preference number: 4 (lower is better)
Translates to: TRAHHSLPGPAGHHWSKMSDLGL*HNLAQG
Trigger: ACCTTGGGCCAGATTGTGTCACAAACCAAGGTCACT...CATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp TCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGTGTGGATGTCACAGCTaGACAAAGAATGCAAGGACA +
Preference number: 4 (lower is better)
Translates to: SGLERWDQGPSLTSGTRRCGCHS*TKNART
Trigger: TGTCCTTGCATTCTTTGTGCAGCTGTGACATCCACA...CCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCAGACAATGTCACGGGCTaGAGGTACCCCCTTTGGGCA +
Preference number: 4 (lower is better)
Translates to: GPAGHHWSKMQRHRSLESDNVTG*RYPLWA
Trigger: TGCCCAAAGGGGGTACCTGCAGCCCGTGACATTGTC...TGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAATTGTTATCCAGCTTGTaGGCTCTGAAGGTAAGTTGC +
Preference number: 4 (lower is better)
Translates to: WDQGPSLTSGTRRAPLVQLLSSL*ALKVSC
Trigger: GCAACTTACCTTCAGAGCCCACAAGCTGGATAACAA...TTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGGGAATGGCTCCCAGCTaGGGTTCAGGTTGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: TRAHHSLPGPAGHHWSKMGMAPS*GSGCFS
Trigger: TGAAAAACAACCTGAACCCCAGCTGGGAGCCATTCC...CATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAAGGCAGTGCAGAGACTaGCTGCTCCTTGGGTCCCCA +
Preference number: 4 (lower is better)
Translates to: PAGHHWSKMQRHRSLESQRQCRD*LLLGSP
Trigger: TGGGGACCCAAGGAGCAGCCAGTCTCTGCACTGCCT...TTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACTGAAGGGCACAAACTaGACAATGTCACGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: AHHSLPGPAGHHWSKMQRLKGTN*TMSRAA
Trigger: TGCAGCCCGTGACATTGTCCAGTTTGTGCCCTTCAG...TCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGGTCCTCAGAGTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCCTGAAGGGCACAAACTaGACAATGTCACGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: GSSELRDIGLGEMGPGPILKGTN*TMSRAA
Trigger: TGCAGCCCGTGACATTGTCCAGTTTGTGCCCTTCAG...GATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAGGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CACTGGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTAGCTGGGAGTCATAGCTaGCGTGGAGGGCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: HWNHKVSTGTERLKGCWLAGSHS*RGGPGS
Trigger: GCTCCCAGGCCCTCCACGCCAGCTATGACTCCCAGC...TAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR TCA 90 bp CCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACTCGGTACTTGGGGTTaGTACAGTCCCACTGCATCT +
Preference number: 4 (lower is better)
Translates to: PSLTSGTRRAPLVQNAETLGTWG*YSPTAS
Trigger: AGATGCAGTGGGACTGTATCAACCCCAAGTACCGAG...TGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp AGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACTCTGGCAGCCACCCATaGTATAATCCAGGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: RDIGLGEMGPGPITHFRDSGSHP*YNPGRC
Trigger: ACACCTTCCTGGATTATATCATGGGTGGCTGCCAGA...GTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCATCCCACTGCATCTCCTaGCCAGGGTTTGCGGTCCCC +
Preference number: 4 (lower is better)
Translates to: APLVQNAETQVTGITRSASHCIS*PGFAVP
Trigger: GGGGACCGCAAACCCTGGGCAGGAGATGCAGTGGGA...TGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp CCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACTGAGCGGGGGCTGAGGCAGTaGAGAGACTGGCTGCTCCTT +
Preference number: 4 (lower is better)
Translates to: PKCRDTGHWNHKVSTGTERGLRQ*RDWLLL
Trigger: AAGGAGCAGCCAGTCTCTGCACTGCCTCAGCCCCCG...CTCAGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR GCA 90 bp CCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAAGATACCGCCCACTGTaGGCAAGGCCTGCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: PAGHHWSKMQRHRSLESQRYRPL*ARPAGS
Trigger: ACTACCTGCAGGCCTTGCGCACAGTGGGCGGTATCT...TTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp ACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAGACAATGTCACGGGCTaGAGGTACCCCCTTTGGGCA +
Preference number: 4 (lower is better)
Translates to: TRRAPLVQNAETQVTGITDNVTG*RYPLWA
Trigger: TGCCCAAAGGGGGTACCTGCAGCCCGTGACATTGTC...TGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGAGTTTGTGACACAATCTaGCCCAAGGTGCACTCCGTA +
Preference number: 4 (lower is better)
Translates to: AHHSLPGPAGHHWSKMQRVCDTI*PKVHSV
Trigger: TACGGAGTGCACCTTGGGCCAGATTGTGTCACAAAC...TCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACGTCCTCCAGACCAGTTaGTCACTCTGGTCTCCATTG +
Preference number: 4 (lower is better)
Translates to: HHSLPGPAGHHWSKMQRHVLQTS*SLWSPL
Trigger: CAATGGAGACCAGAGTGACCAACTGGTCTGGAGGAC...GTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTAGTCGTGCTTTCCACTaGAGTCATAGTCATATACCA +
Preference number: 4 (lower is better)
Translates to: GEMGPGPITHFRDPQGTTSRAFH*SHSHIP
Trigger: TGGTATATGACTATGACTCCAGTGGAAAGCACGACT...AGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGAGACCTCAAAGTTTaGGGGGATTCGAGCTCCGAA +
Preference number: 4 (lower is better)
Translates to: VEGYRAWRDGTRAHHSLPGDLKV*GDSSSE
Trigger: TTCGGAGCTCGAATCCCCCCAAACTTTGAGGTCTCC...CGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTTGATAGCAAAGTCATaGGAGACCTCAAAGTTTGGG +
Preference number: 4 (lower is better)
Translates to: WRDGTRAHHSLPGPAGHHLIAKS*ETSKFG
Trigger: CCCAAACTTTGAGGTCTCCCATGACTTTGCTATCAA...GTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGCTGCTCTCGCTGGGCTaGTTCAGCCACACGGTTGAT +
Preference number: 4 (lower is better)
Translates to: PQGTTGPKCRDTGHWNHKLLSLG*FSHTVD
Trigger: ATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAG...CTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp AGAGGAGCAGGACAGCAAAAACACCACCACCAGCATTACGCCAGCCAAGATGGGCTGCTCTCGCTGGGCTaGTTCAGCCACACGGTTGAT +
Preference number: 4 (lower is better)
Translates to: RGAGQQKHHHQHYASQDGLLSLG*FSHTVD
Trigger: ATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAG...CCCATCTTGGCTGGCGTAATGCTGGTGGTGGTGTTTTTGCTGTCCTGCTCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CACTGGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTAGTGCTCTGCTCTCGCTaGGCTGGTTCAGCCACACGG +
Preference number: 4 (lower is better)
Translates to: HWNHKVSTGTERLKGCWLVLCSR*AGSATR
Trigger: CCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCAC...TAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CCA 90 bp CGCCAGCCAAGATGGGCTATTCAGAAGCTCTGCTTTGAACACCTTTTGTATCCCGCTGGGAGTCATAGCTaGCGTGGAGGGCCTGGGAGC +
Preference number: 4 (lower is better)
Translates to: RQPRWAIQKLCFEHLLYPAGSHS*RGGPGS
Trigger: GCTCCCAGGCCCTCCACGCCAGCTATGACTCCCAGC...GGGATACAAAAGGTGTTCAAAGCAGAGCTTCTGAATAGCCCATCTTGGCTGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGAAGGGGTCAGACTTGCTaGACAGATCCTTGTTATCCA +
Preference number: 4 (lower is better)
Translates to: AHHSLPGPAGHHWSKMQRRGQTC*TDPCYP
Trigger: TGGATAACAAGGATCTGTTCAGCAAGTCTGACCCCT...TCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp CTCAGAGTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTCGGTACTTGGGGTTaGTACAGTCCCACTGCATCT +
Preference number: 4 (lower is better)
Translates to: LRVEGYRAWRDGTRAHHSLGTWG*YSPTAS
Trigger: AGATGCAGTGGGACTGTATCAACCCCAAGTACCGAG...TGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GGGTCCTCAGAGTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCCAGCACGACTGTCCCTaGGCTCTTGTAATTCTTCTT +
Preference number: 4 (lower is better)
Translates to: GSSELRDIGLGEMGPGPIQHDCP*ALVILL
Trigger: AAGAAGAATTACAAGAGCTCAGGGACAGTCGTGCTG...GATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAGGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp CCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACATCTGGCAGCCACCCATaGTATAATCCAGGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: PSLTSGTRRAPLVQNAETSGSHP*YNPGRC
Trigger: ACACCTTCCTGGATTATATCATGGGTGGCTGCCAGA...TGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTGGCGGTAGGAGGCTATaGCCCCTGAGATCTCTTCAC +
Preference number: 4 (lower is better)
Translates to: AGHHWSKMQRHRSLESQGGGRRL*PLRSLH
Trigger: GTGAAGAGATCTCAGGGGTCATAGCCTCCTACCGCC...ACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp GTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGTTTGCGGTCCCCTCTTaGATTTCCTGGAATGTGCTG +
Preference number: 4 (lower is better)
Translates to: VEGYRAWRDGTRAHHSLPFAVPS*ISWNVL
Trigger: CAGCACATTCCAGGAAATGCAAGAGGGGACCGCAAA...CGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp AATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATGTCGATCCCACTGCATCTCCTaGCCAGGGTTTGCGGTCCCC +
Preference number: 4 (lower is better)
Translates to: NHKVSTGTERLKGCWLCRSHCIS*PGFAVP
Trigger: GGGGACCGCAAACCCTGGGCAGGAGATGCAGTGGGA...TCGACATAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR GCA 90 bp AAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATGTCGAGAGGCAAGTGCAGAGACTGGCTaGTCCTTGGGTCCCCATTGG +
Preference number: 4 (lower is better)
Translates to: KVSTGTERLKGCWLCREASAETG*SLGPHW
Trigger: CCAATGGGGACCCAAGGAGCAGCCAGTCTCTGCACT...TGCCTCTCGACATAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR GCA 90 bp GCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTAGATACCGCCCACTGTaGGCAAGGCCTGCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: AGHHWSKMQRHRSLESQGRYRPL*ARPAGS
Trigger: ACTACCTGCAGGCCTTGCGCACAGTGGGCGGTATCT...ACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp AATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATGTCGAGCTTGGCCGGTGCTCTaGTCTCGCTGGGCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: NHKVSTGTERLKGCWLCRAWPVL*SRWAGS
Trigger: TGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGC...TCGACATAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CCA 90 bp GAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGAGTTGCACATAGTCGTTaGTACCTGATACCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: EGYRAWRDGTRAHHSLPGVAHSR*YLIPPQ
Trigger: CTGAGGAGGTATCAGGTACCAACGACTATGTGCAAC...TCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCATTGTTATCCAGCTTGTaGGCTCTGAAGGTAAGTTGC +
Preference number: 4 (lower is better)
Translates to: YRAWRDGTRAHHSLPGPALLSSL*ALKVSC
Trigger: GCAACTTACCTTCAGAGCCCACAAGCTGGATAACAA...TGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACGTACTGAATACTTCGTaGCTTGGCCGGTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: DPQGTTGPKCRDTGHWNHVLNTS*LGRCSA
Trigger: AGCAGAGCACCGGCCAAGCCACGAAGTATTCAGTAC...GTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp CACTGGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTAATGGATGCGGCTTTGTaGGCGTGTCTCGGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: HWNHKVSTGTERLKGCWLMDAAL*ACLGPA
Trigger: TGCTGGACCGAGACACGCTCACAAAGCCGCATCCAT...TAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR TCA 90 bp GACTTGCCCGCCGTCTTCCCATTCTTCAGCAGTAATGGCTTAGTGACCTTGGTTATGGATGCGGCTTTGTaGGCGTGTCTCGGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: DLPAVFPFFSSNGLVTLVMDAAL*ACLGPA
Trigger: TGCTGGACCGAGACACGCTCACAAAGCCGCATCCAT...AACCAAGGTCACTAAGCCATTACTGCTGAAGAATGGGAAGACGGCGGGCAAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165725.8
CDS-3UTR TCA 90 bp CTCAGAGTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCAAGTGACCTTGGTTTGTaGCACAATCTGGCCCAAGGT +
Preference number: 4 (lower is better)
Translates to: LRVEGYRAWRDGTRAHHSSDLGL*HNLAQG
Trigger: ACCTTGGGCCAGATTGTGTCACAAACCAAGGTCACT...TGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp CCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACAAGGGGTCAGACTTGCTaGACAGATCCTTGTTATCCA +
Preference number: 4 (lower is better)
Translates to: PSLTSGTRRAPLVQNAETRGQTC*TDPCYP
Trigger: TGGATAACAAGGATCTGTTCAGCAAGTCTGACCCCT...TGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp ACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACACTCGGTACTTGGGGTTaGTACAGTCCCACTGCATCT +
Preference number: 4 (lower is better)
Translates to: TRRAPLVQNAETQVTGITLGTWG*YSPTAS
Trigger: AGATGCAGTGGGACTGTATCAACCCCAAGTACCGAG...TGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp CCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGTCACCACACCGTCAGTaGGCACCAGCAGTACTGAAT +
Preference number: 4 (lower is better)
Translates to: PQGTTGPKCRDTGHWNHKSPHRQ*APAVLN
Trigger: ATTCAGTACTGCTGGTGCTCACTGACGGTGTGGTGA...CTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp CCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAACAGCTGCACAAAGAATaGAAGGACAGGCGGAATGGC +
Preference number: 4 (lower is better)
Translates to: PAGHHWSKMQRHRSLESQQLHKE*KDRRNG
Trigger: GCCATTCCGCCTGTCCTTGCATTCTTTGTGCAGCTG...TTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp CCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACTGAGAGTGCAGAGACTGGCTaGTCCTTGGGTCCCCATTGG +
Preference number: 4 (lower is better)
Translates to: PKCRDTGHWNHKVSTGTESAETG*SLGPHW
Trigger: CCAATGGGGACCCAAGGAGCAGCCAGTCTCTGCACT...CTCAGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR GCA 90 bp AGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAAGATACCGCCCACTGTaGGCAAGGCCTGCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: RAPLVQNAETQVTGITRSRYRPL*ARPAGS
Trigger: ACTACCTGCAGGCCTTGCGCACAGTGGGCGGTATCT...TGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCCTCCAGACCAGTTaGTCACTCTGGTCTCCATTG +
Preference number: 4 (lower is better)
Translates to: PQGTTGPKCRDTGHWNHKVLQTS*SLWSPL
Trigger: CAATGGAGACCAGAGTGACCAACTGGTCTGGAGGAC...CTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAACTTGAGCGGCCTGTaGATGTCACAGCTGCACAAA +
Preference number: 4 (lower is better)
Translates to: DPQGTTGPKCRDTGHWNHNLSGL*MSQLHK
Trigger: TTTGTGCAGCTGTGACATCCACAGGCCGCTCAAGTT...GTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGGAGACCTCAAAGTTTaGGGGGATTCGAGCTCCGAA +
Preference number: 4 (lower is better)
Translates to: PQGTTGPKCRDTGHWNHKGDLKV*GDSSSE
Trigger: TTCGGAGCTCGAATCCCCCCAAACTTTGAGGTCTCC...CTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp CCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAATCTGGCAGCCACCCATaGTATAATCCAGGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: PAGHHWSKMQRHRSLESQSGSHP*YNPGRC
Trigger: ACACCTTCCTGGATTATATCATGGGTGGCTGCCAGA...TTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCAGTTGCACATAGTCGTTaGTACCTGATACCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: GPAGHHWSKMQRHRSLESVAHSR*YLIPPQ
Trigger: CTGAGGAGGTATCAGGTACCAACGACTATGTGCAAC...TGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGAATGGCTCCCAGCTaGGGTTCAGGTTGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: PAGHHWSKMQRHRSLESQGMAPS*GSGCFS
Trigger: TGAAAAACAACCTGAACCCCAGCTGGGAGCCATTCC...TTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGAATACTTCGTGGCTTaGCCGGTGCTCTGCTCTCGC +
Preference number: 4 (lower is better)
Translates to: TTGPKCRDTGHWNHKVSTEYFVA*PVLCSR
Trigger: GCGAGAGCAGAGCACCGGCCAAGCCACGAAGTATTC...TGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp AAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATGTCGAGAGGCACTGAAGGGCACAAACTaGACAATGTCACGGGCTGCA +
Preference number: 4 (lower is better)
Translates to: KVSTGTERLKGCWLCREALKGTN*TMSRAA
Trigger: TGCAGCCCGTGACATTGTCCAGTTTGTGCCCTTCAG...TGCCTCTCGACATAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CCA 90 bp CCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACTGAGGCAGTACTGAATACGTaGCTTGGCCGGTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: PKCRDTGHWNHKVSTGTEAVLNT*LGRCSA
Trigger: AGCAGAGCACCGGCCAAGCCACGTATTCAGTACTGC...CTCAGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
3UTR CAA 72 bp CCTGATACCTCCTCAGCCACAATCGTGATAGTAGACTaGCCCGCCGTCTTCCCATTCTTCAGCAGTAATGGC +
Preference number: 4 (lower is better)
Translates to: PDTSSATIVIVD*PAVFPFFSSNG
Trigger: GCCATTACTGCTGAAGAATGGGAAGACGGCGGGCAAGTCTACTATCACGATTGTGGCTGAGGAGGTATCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165725.8
CDS-3UTR TCA 90 bp CCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGCAGCACGACTGTCCCTaGGCTCTTGTAATTCTTCTT +
Preference number: 4 (lower is better)
Translates to: PQGTTGPKCRDTGHWNHKQHDCP*ALVILL
Trigger: AAGAAGAATTACAAGAGCTCAGGGACAGTCGTGCTG...CTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp ACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACACAGCACGACTGTCCCTaGGCTCTTGTAATTCTTCTT +
Preference number: 4 (lower is better)
Translates to: TRRAPLVQNAETQVTGITQHDCP*ALVILL
Trigger: AAGAAGAATTACAAGAGCTCAGGGACAGTCGTGCTG...TGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp GCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCAGGAGGCTATGACCCCTaGGATCTCTTCACATTCAGG +
Preference number: 4 (lower is better)
Translates to: APLVQNAETQVTGITRSAGGYDP*DLFTFR
Trigger: CCTGAATGTGAAGAGATCTCAGGGGTCATAGCCTCC...TGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp CAGGACAGCAAAAACACCACCACCAGCATTACGCCAGCCAAGATGGGCTATTCATCACCACACCGTCAGTaGGCACCAGCAGTACTGAAT +
Preference number: 4 (lower is better)
Translates to: QDSKNTTTSITPAKMGYSSPHRQ*APAVLN
Trigger: ATTCAGTACTGCTGGTGCTCACTGACGGTGTGGTGA...TGAATAGCCCATCTTGGCTGGCGTAATGCTGGTGGTGGTGTTTTTGCTGTCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCGTTTGTGACACAATCTaGCCCAAGGTGCACTCCGTA +
Preference number: 4 (lower is better)
Translates to: QGTTGPKCRDTGHWNHKVVCDTI*PKVHSV
Trigger: TACGGAGTGCACCTTGGGCCAGATTGTGTCACAAAC...GACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp AGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGTCCTCCAGACCAGTTaGTCACTCTGGTCTCCATTG +
Preference number: 4 (lower is better)
Translates to: RAPLVQNAETQVTGITRSVLQTS*SLWSPL
Trigger: CAATGGAGACCAGAGTGACCAACTGGTCTGGAGGAC...TGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCGGAATGGCTCCCAGCTaGGGTTCAGGTTGTTTTTCA +
Preference number: 4 (lower is better)
Translates to: QGTTGPKCRDTGHWNHKVGMAPS*GSGCFS
Trigger: TGAAAAACAACCTGAACCCCAGCTGGGAGCCATTCC...GACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCCCTCTTGCATTTCCTaGAATGTGCTGGTGAACTCG +
Preference number: 4 (lower is better)
Translates to: AGHHWSKMQRHRSLESQGPSCIS*NVLVNS
Trigger: CGAGTTCACCAGCACATTCCAGGAAATGCAAGAGGG...ACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GACTTGCCCGCCGTCTTCCCATTCTTCAGCAGTAATGGCTTAGTGACCTTGGTTATTTCTACAGCAGCCTaGCCCAAGGTGCACTCCGTA +
Preference number: 4 (lower is better)
Translates to: DLPAVFPFFSSNGLVTLVISTAA*PKVHSV
Trigger: TACGGAGTGCACCTTGGGCCAGGCTGCTGTAGAAAT...AACCAAGGTCACTAAGCCATTACTGCTGAAGAATGGGAAGACGGCGGGCAAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165725.8
CDS-3UTR GCA 90 bp AGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCATTTGCGGTCCCCTCTTaGATTTCCTGGAATGTGCTG +
Preference number: 4 (lower is better)
Translates to: RAPLVQNAETQVTGITRSFAVPS*ISWNVL
Trigger: CAGCACATTCCAGGAAATGCAAGAGGGGACCGCAAA...TGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp CCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACTGAGTTTGCGGTCCCCTCTTaGATTTCCTGGAATGTGCTG +
Preference number: 4 (lower is better)
Translates to: PKCRDTGHWNHKVSTGTEFAVPS*ISWNVL
Trigger: CAGCACATTCCAGGAAATGCAAGAGGGGACCGCAAA...CTCAGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CCA 90 bp AATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATGTCGATCGGCATCGAACACGTaGAACTGCAAAGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: NHKVSTGTERLKGCWLCRSASNT*NCKGCF
Trigger: GAAGCAGCCTTTGCAGTTCCACGTGTTCGATGCCGA...TCGACATAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CCA 90 bp CCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAATTGTTATCCAGCTTGTaGGCTCTGAAGGTAAGTTGC +
Preference number: 4 (lower is better)
Translates to: PAGHHWSKMQRHRSLESQLLSSL*ALKVSC
Trigger: GCAACTTACCTTCAGAGCCCACAAGCTGGATAACAA...TTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGTCCTCCAGACCAGTTaGTCACTCTGGTCTCCATTG +
Preference number: 4 (lower is better)
Translates to: TTGPKCRDTGHWNHKVSTVLQTS*SLWSPL
Trigger: CAATGGAGACCAGAGTGACCAACTGGTCTGGAGGAC...TGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp GGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACTCCCTCTTGCATTTCCTaGAATGTGCTGGTGAACTCG +
Preference number: 4 (lower is better)
Translates to: GPKCRDTGHWNHKVSTGTPSCIS*NVLVNS
Trigger: CGAGTTCACCAGCACATTCCAGGAAATGCAAGAGGG...AGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR TCA 90 bp AGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAAGGGGTCAGACTTGCTaGACAGATCCTTGTTATCCA +
Preference number: 4 (lower is better)
Translates to: RAPLVQNAETQVTGITRSRGQTC*TDPCYP
Trigger: TGGATAACAAGGATCTGTTCAGCAAGTCTGACCCCT...TGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp AATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATGTCGAGTTTGTGACACAATCTaGCCCAAGGTGCACTCCGTA +
Preference number: 4 (lower is better)
Translates to: NHKVSTGTERLKGCWLCRVCDTI*PKVHSV
Trigger: TACGGAGTGCACCTTGGGCCAGATTGTGTCACAAAC...TCGACATAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CCA 90 bp GCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCAGTTGCACATAGTCGTTaGTACCTGATACCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: APLVQNAETQVTGITRSAVAHSR*YLIPPQ
Trigger: CTGAGGAGGTATCAGGTACCAACGACTATGTGCAAC...TGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGAGTCGTGCTTTCCACTaGAGTCATAGTCATATACCA +
Preference number: 4 (lower is better)
Translates to: PQGTTGPKCRDTGHWNHKSRAFH*SHSHIP
Trigger: TGGTATATGACTATGACTCCAGTGGAAAGCACGACT...CTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACACCCTCTTGCATTTCCTaGAATGTGCTGGTGAACTCG +
Preference number: 4 (lower is better)
Translates to: TTGPKCRDTGHWNHKVSTPSCIS*NVLVNS
Trigger: CGAGTTCACCAGCACATTCCAGGAAATGCAAGAGGG...TGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR GCA 90 bp TTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGGGTACGTGGCTTGGCCGGTaGTCTGCTCTCGCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: FLLFTSIKSQPLEEVIEGTWLGR*SALAGL
Trigger: CAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGT...ACCCTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
CDS-3UTR CCA 90 bp GCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTTTGATAGCAAAGTCATaGGAGACCTCAAAGTTTGGG +
Preference number: 4 (lower is better)
Translates to: AGHHWSKMQRHRSLESQGLIAKS*ETSKFG
Trigger: CCCAAACTTTGAGGTCTCCCATGACTTTGCTATCAA...ACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp AAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATGTCGAGAGGCATTGATAGCAAAGTCATaGGAGACCTCAAAGTTTGGG +
Preference number: 4 (lower is better)
Translates to: KVSTGTERLKGCWLCREALIAKS*ETSKFG
Trigger: CCCAAACTTTGAGGTCTCCCATGACTTTGCTATCAA...TGCCTCTCGACATAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CCA 90 bp CAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCTTGATAGCAAAGTCATaGGAGACCTCAAAGTTTGGG +
Preference number: 4 (lower is better)
Translates to: QGTTGPKCRDTGHWNHKVLIAKS*ETSKFG
Trigger: CCCAAACTTTGAGGTCTCCCATGACTTTGCTATCAA...GACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
3UTR CAA 72 bp AGATGGGCTATTCAGAAGCTCTGCTTTGAACACCTTTaGTATCCCCCAGAACTCACTGAGAGACTGAAGGGG +
Preference number: 4 (lower is better)
Translates to: RWAIQKLCFEHL*YPPELTERLKG
Trigger: CCCCTTCAGTCTCTCAGTGAGTTCTGGGGGATACAAAAGGTGTTCAAAGCAGAGCTTCTGAATAGCCCATCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
3UTR CAA 72 bp TACGCCAGCCAAGATGGGCTATTCAGAAGCTCTGCTTaGAACACCTTTTGTATCCCCCAGAACTCACTGAGA +
Preference number: 4 (lower is better)
Translates to: YASQDGLFRSSA*NTFCIPQNSLR
Trigger: TCTCAGTGAGTTCTGGGGGATACAAAAGGTGTTCAAAGCAGAGCTTCTGAATAGCCCATCTTGGCTGGCGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp ACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACATTGTTATCCAGCTTGTaGGCTCTGAAGGTAAGTTGC +
Preference number: 4 (lower is better)
Translates to: TTGPKCRDTGHWNHKVSTLLSSL*ALKVSC
Trigger: GCAACTTACCTTCAGAGCCCACAAGCTGGATAACAA...TGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp CACTGGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTAAGTCGTGCTTTCCACTaGAGTCATAGTCATATACCA +
Preference number: 4 (lower is better)
Translates to: HWNHKVSTGTERLKGCWLSRAFH*SHSHIP
Trigger: TGGTATATGACTATGACTCCAGTGGAAAGCACGACT...TAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CCA 90 bp TGGTTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGGTGCTCTGCTCTCGCTaGGCTGGTTCAGCCACACGG +
Preference number: 4 (lower is better)
Translates to: WFLLFTSIKSQPLEEVIEVLCSR*AGSATR
Trigger: CCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCAC...CTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGGGTGTACTGAATACTTCGTaGCTTGGCCGGTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: FLLFTSIKSQPLEEVIEGVLNTS*LGRCSA
Trigger: AGCAGAGCACCGGCCAAGCCACGAAGTATTCAGTAC...ACCCTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR TCA 90 bp TGGTTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGAGTGACCTTGGTTTGTaGCACAATCTGGCCCAAGGT +
Preference number: 4 (lower is better)
Translates to: WFLLFTSIKSQPLEEVIESDLGL*HNLAQG
Trigger: ACCTTGGGCCAGATTGTGTCACAAACCAAGGTCACT...CTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CCA 90 bp TTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGGGTAACTTGAGCGGCCTGTaGATGTCACAGCTGCACAAA +
Preference number: 4 (lower is better)
Translates to: FLLFTSIKSQPLEEVIEGNLSGL*MSQLHK
Trigger: TTTGTGCAGCTGTGACATCCACAGGCCGCTCAAGTT...ACCCTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS TCA 90 bp CCACTGTGCGCAAGGCCTGCAGGTAGTGGTTGGGCTGTCGGGGGCTaGGGCAGTGCAGAGACTGGCTGCTCCTTGGGTCCCCATTGGAGG +
Preference number: 5 (lower is better)
Translates to: PLCARPAGSGWAVGG*GSAETGCSLGPHWR
Trigger: CCTCCAATGGGGACCCAAGGAGCAGCCAGTCTCTGCACTGCCTCAGCCCCCGACAGCCCAACCACTACCTGCAGGCCTTGCGCACAGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp ATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAGGGAGAAGACTGGGCTaGAACAGGAGCGAAGCACCT +
Preference number: 5 (lower is better)
Translates to: MGPGPITHFRDPQGTTGPGRRLG*NRSEAP
Trigger: AGGTGCTTCGCTCCTGTTCAAGCCCAGTCTTCTCCC...TGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCGGGAGAAGACTGGGCTaGAACAGGAGCGAAGCACCT +
Preference number: 5 (lower is better)
Translates to: RWDQGPSLTSGTRRAPLVGRRLG*NRSEAP
Trigger: AGGTGCTTCGCTCCTGTTCAAGCCCAGTCTTCTCCC...GACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp TGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAATCTCCTGCCCAGGGTTaGCGGTCCCCTCTTGCATTT +
Preference number: 5 (lower is better)
Translates to: WDQGPSLTSGTRRAPLVQSPAQG*RSPLAF
Trigger: AAATGCAAGAGGGGACCGCAAACCCTGGGCAGGAGA...TTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTTCTCCTGCCCAGGGTTaGCGGTCCCCTCTTGCATTT +
Preference number: 5 (lower is better)
Translates to: GEMGPGPITHFRDPQGTTSPAQG*RSPLAF
Trigger: AAATGCAAGAGGGGACCGCAAACCCTGGGCAGGAGA...AGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGGGTTCAGCCACACGGTaGATGATAGGGGCCACGTTG +
Preference number: 5 (lower is better)
Translates to: RDGTRAHHSLPGPAGHHWGSATR*MIGATL
Trigger: CAACGTGGCCCCTATCATCAACCGTGTGGCTGAACC...CCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAAGGGAGAAGACTGGGCTaGAACAGGAGCGAAGCACCT +
Preference number: 5 (lower is better)
Translates to: GPGPITHFRDPQGTTGPKGRRLG*NRSEAP
Trigger: AGGTGCTTCGCTCCTGTTCAAGCCCAGTCTTCTCCC...TTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp TCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGAGTCCTCCAGACCAGTaGGTCACTCTGGTCTCCATT +
Preference number: 5 (lower is better)
Translates to: SGLERWDQGPSLTSGTRRSPPDQ*VTLVSI
Trigger: AATGGAGACCAGAGTGACCAACTGGTCTGGAGGACT...CCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCAGTCCTCCAGACCAGTaGGTCACTCTGGTCTCCATT +
Preference number: 5 (lower is better)
Translates to: RWDQGPSLTSGTRRAPLVSPPDQ*VTLVSI
Trigger: AATGGAGACCAGAGTGACCAACTGGTCTGGAGGACT...GACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTAGTCCTCCAGACCAGTaGGTCACTCTGGTCTCCATT +
Preference number: 5 (lower is better)
Translates to: EMGPGPITHFRDPQGTTGSPPDQ*VTLVSI
Trigger: AATGGAGACCAGAGTGACCAACTGGTCTGGAGGACT...ACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp ATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCATCTCGGTACTTGGGGTaGATACAGTCCCACTGCATC +
Preference number: 5 (lower is better)
Translates to: MGPGPITHFRDPQGTTGPSRYLG*IQSHCI
Trigger: GATGCAGTGGGACTGTATCAACCCCAAGTACCGAGA...TGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp TGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAATCTCGGTACTTGGGGTaGATACAGTCCCACTGCATC +
Preference number: 5 (lower is better)
Translates to: WDQGPSLTSGTRRAPLVQSRYLG*IQSHCI
Trigger: GATGCAGTGGGACTGTATCAACCCCAAGTACCGAGA...TTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGGTTCAGCCACACGGTaGATGATAGGGGCCACGTTG +
Preference number: 5 (lower is better)
Translates to: DQGPSLTSGTRRAPLVQNGSATR*MIGATL
Trigger: CAACGTGGCCCCTATCATCAACCGTGTGGCTGAACC...ATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS GCA 90 bp GTGAGCACCAGCAGTACTGAATACTTCGTGGCTTGGCCGGTGCTCTaGTCTCGCTGGGCTGGTTCAGCCACACGGTTGATGATAGGGGCC +
Preference number: 5 (lower is better)
Translates to: VSTSSTEYFVAWPVL*SRWAGSATRLMIGA
Trigger: GGCCCCTATCATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGAAGTATTCAGTACTGCTGGTGCTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS GCA 90 bp TCAGTGAGCACCAGCAGTACTGAATACGTGGCTTGGCCGGTGCTCTaGTCTCGCTGGGCTGGTTCAGCCACACGGTTGATGATAGGGGCC +
Preference number: 5 (lower is better)
Translates to: SVSTSSTEYVAWPVL*SRWAGSATRLMIGA
Trigger: GGCCCCTATCATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGTATTCAGTACTGCTGGTGCTCACTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp GGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAAATCGTGATAGTAGACTaGCCCGCCGTCTTCCCATTC +
Preference number: 5 (lower is better)
Translates to: GPGPITHFRDPQGTTGPKIVIVD*PAVFPF
Trigger: GAATGGGAAGACGGCGGGCAAGTCTACTATCACGAT...TTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGGGCTCTGAAGGTAAGTaGCACATAGTCGTTGGTACC +
Preference number: 5 (lower is better)
Translates to: RDGTRAHHSLPGPAGHHWGSEGK*HIVVGT
Trigger: GGTACCAACGACTATGTGCAACTTACCTTCAGAGCC...CCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCTTCTTGTCTCGGTACTaGGGGTTGATACAGTCCCAC +
Preference number: 5 (lower is better)
Translates to: RWDQGPSLTSGTRRAPLVFLSRY*GLIQSH
Trigger: GTGGGACTGTATCAACCCCAAGTACCGAGACAAGAA...GACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp ATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCCTCCTTGGGTCCCCATaGGAGGCAGTGAAGTCGATA +
Preference number: 5 (lower is better)
Translates to: ISGLERWDQGPSLTSGTRLLGSP*EAVKSI
Trigger: TATCGACTTCACTGCCTCCAATGGGGACCCAAGGAG...GCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACGAGGGGGCAGCGTCCTaGAAGTCCCTGAAGGGCACA +
Preference number: 5 (lower is better)
Translates to: DPQGTTGPKCRDTGHWNHEGAAS*KSLKGT
Trigger: TGTGCCCTTCAGGGACTTCAAGGACGCTGCCCCCTC...GTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS CCA 90 bp CACCTCCACCCACTGCTCATCCGAGTAGAGTTTGAGCAGCACACATaGATGCGGCTTTGTGAGCGTGTCTCGGTCCAGCAGGCCATGGCA +
Preference number: 5 (lower is better)
Translates to: HLHPLLIRVEFEQHT*MRLCERVSVQQAMA
Trigger: TGCCATGGCCTGCTGGACCGAGACACGCTCACAAAGCCGCATCCATGTGTGCTGCTCAAACTCTACTCGGATGAGCAGTGGGTGGAGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000165725.8
ENSMUST00000171643.2
CDS CCA 90 bp ACCAGCAGTACTGAATACGTGGCTTGGCCGGTGCTCTGCTCTCGCTaGGCTGGTTCAGCCACACGGTTGATGATAGGGGCCACGTTGGTA +
Preference number: 5 (lower is better)
Translates to: TSSTEYVAWPVLCSR*AGSATRLMIGATLV
Trigger: TACCAACGTGGCCCCTATCATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGTATTCAGTACTGCTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp ATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCATCCTTGTTATCCAGCTaGTGGGCTCTGAAGGTAAGT +
Preference number: 5 (lower is better)
Translates to: MGPGPITHFRDPQGTTGPSLLSS*WALKVS
Trigger: ACTTACCTTCAGAGCCCACAAGCTGGATAACAAGGA...TGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAATCCTTGTTATCCAGCTaGTGGGCTCTGAAGGTAAGT +
Preference number: 5 (lower is better)
Translates to: GTRAHHSLPGPAGHHWSKSLLSS*WALKVS
Trigger: ACTTACCTTCAGAGCCCACAAGCTGGATAACAAGGA...TTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp ACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGGTTTGCGGTCCCCTCTaGCATTTCCTGGAATGTGCT +
Preference number: 5 (lower is better)
Translates to: TRAHHSLPGPAGHHWSKMVCGPL*HFLECA
Trigger: AGCACATTCCAGGAAATGCAAGAGGGGACCGCAAAC...CATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATTCTTGTCTCGGTACTaGGGGTTGATACAGTCCCAC +
Preference number: 5 (lower is better)
Translates to: GPGPITHFRDPQGTTGPKFLSRY*GLIQSH
Trigger: GTGGGACTGTATCAACCCCAAGTACCGAGACAAGAA...TTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCTCCTTGGGTCCCCATaGGAGGCAGTGAAGTCGATA +
Preference number: 5 (lower is better)
Translates to: RDIGLGEMGPGPITHFRDLLGSP*EAVKSI
Trigger: TATCGACTTCACTGCCTCCAATGGGGACCCAAGGAG...GTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACGGTTCAGCCACACGGTaGATGATAGGGGCCACGTTG +
Preference number: 5 (lower is better)
Translates to: HHSLPGPAGHHWSKMQRHGSATR*MIGATL
Trigger: CAACGTGGCCCCTATCATCAACCGTGTGGCTGAACC...GTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGAGGGGGCAGCGTCCTaGAAGTCCCTGAAGGGCACA +
Preference number: 5 (lower is better)
Translates to: PQGTTGPKCRDTGHWNHKEGAAS*KSLKGT
Trigger: TGTGCCCTTCAGGGACTTCAAGGACGCTGCCCCCTC...CTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS CCA 90 bp AGCAGTACTGAATACTTCGTGGCTTGGCCGGTGCTCTGCTCTCGCTaGGCTGGTTCAGCCACACGGTTGATGATAGGGGCCACGTTGGTA +
Preference number: 5 (lower is better)
Translates to: SSTEYFVAWPVLCSR*AGSATRLMIGATLV
Trigger: TACCAACGTGGCCCCTATCATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGAAGTATTCAGTACTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp TCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGAATGGCTTAGTGACCTaGGTTTGTGACACAATCTGG +
Preference number: 5 (lower is better)
Translates to: SGLERWDQGPSLTSGTRRNGLVT*VCDTIW
Trigger: CCAGATTGTGTCACAAACCAAGGTCACTAAGCCATT...CCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGAATGGCTTAGTGACCTaGGTTTGTGACACAATCTGG +
Preference number: 5 (lower is better)
Translates to: RDGTRAHHSLPGPAGHHWNGLVT*VCDTIW
Trigger: CCAGATTGTGTCACAAACCAAGGTCACTAAGCCATT...CCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGGGCTCTGAAGGTAAGTaGCACATAGTCGTTGGTACC +
Preference number: 5 (lower is better)
Translates to: DIGLGEMGPGPITHFRDPGSEGK*HIVVGT
Trigger: GGTACCAACGACTATGTGCAACTTACCTTCAGAGCC...CGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp ATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCGGCTCTGAAGGTAAGTaGCACATAGTCGTTGGTACC +
Preference number: 5 (lower is better)
Translates to: ISGLERWDQGPSLTSGTRGSEGK*HIVVGT
Trigger: GGTACCAACGACTATGTGCAACTTACCTTCAGAGCC...GCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS TCA 90 bp CAATGGCTGTTCGGGTCTCTGCCATATCACTCACCACACCGTCAGTaGGCACCAGCAGTACTGAATACGTGGCTTGGCCGGTGCTCTGCT +
Preference number: 5 (lower is better)
Translates to: QWLFGSLPYHSPHRQ*APAVLNTWLGRCSA
Trigger: AGCAGAGCACCGGCCAAGCCACGTATTCAGTACTGCTGGTGCTCACTGACGGTGTGGTGAGTGATATGGCAGAGACCCGAACAGCCATTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp GGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCTTGCTGAACAGATCCTaGTTATCCAGCTTGTGGGCT +
Preference number: 5 (lower is better)
Translates to: GISGLERWDQGPSLTSGTLLNRS*LSSLWA
Trigger: AGCCCACAAGCTGGATAACAAGGATCTGTTCAGCAA...GGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGTTGCTGAACAGATCCTaGTTATCCAGCTTGTGGGCT +
Preference number: 5 (lower is better)
Translates to: DIGLGEMGPGPITHFRDPLLNRS*LSSLWA
Trigger: AGCCCACAAGCTGGATAACAAGGATCTGTTCAGCAA...CGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CTCAGAGTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTCCTTGGGTCCCCATaGGAGGCAGTGAAGTCGATA +
Preference number: 5 (lower is better)
Translates to: LRVEGYRAWRDGTRAHHSLLGSP*EAVKSI
Trigger: TATCGACTTCACTGCCTCCAATGGGGACCCAAGGAG...TGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACCTCCTTGGGTCCCCATaGGAGGCAGTGAAGTCGATA +
Preference number: 5 (lower is better)
Translates to: DPQGTTGPKCRDTGHWNHLLGSP*EAVKSI
Trigger: TATCGACTTCACTGCCTCCAATGGGGACCCAAGGAG...GTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTTCAGCCACACGGTaGATGATAGGGGCCACGTTG +
Preference number: 5 (lower is better)
Translates to: PAGHHWSKMQRHRSLESQGSATR*MIGATL
Trigger: CAACGTGGCCCCTATCATCAACCGTGTGGCTGAACC...TTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CACTGGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTAGAGGGGGCAGCGTCCTaGAAGTCCCTGAAGGGCACA +
Preference number: 5 (lower is better)
Translates to: HWNHKVSTGTERLKGCWLEGAAS*KSLKGT
Trigger: TGTGCCCTTCAGGGACTTCAAGGACGCTGCCCCCTC...TAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS TCA 90 bp CAATGGCTGTTCGGGTCTCTGCCATATCACTCACCACACCGTCAGTaGGCACCAGCAGTACTGAATACTTCGTGGCTTGGCCGGTGCTCT +
Preference number: 5 (lower is better)
Translates to: QWLFGSLPYHSPHRQ*APAVLNTSWLGRCS
Trigger: AGAGCACCGGCCAAGCCACGAAGTATTCAGTACTGCTGGTGCTCACTGACGGTGTGGTGAGTGATATGGCAGAGACCCGAACAGCCATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCAATGGCTTAGTGACCTaGGTTTGTGACACAATCTGG +
Preference number: 5 (lower is better)
Translates to: GISGLERWDQGPSLTSGTNGLVT*VCDTIW
Trigger: CCAGATTGTGTCACAAACCAAGGTCACTAAGCCATT...GGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GACCAGGGCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATATGAAGGGGTCAGACTaGCTGAACAGATCCTTGTTA +
Preference number: 5 (lower is better)
Translates to: DQGPSLTSGTRRAPLVQNMKGSD*LNRSLL
Trigger: TAACAAGGATCTGTTCAGCAAGTCTGACCCCTTCAT...ATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACCAGCTGGGGTTCAGGTaGTTTTTCACCACCTCAGTC +
Preference number: 5 (lower is better)
Translates to: DPQGTTGPKCRDTGHWNHQLGFR*FFTTSV
Trigger: GACTGAGGTGGTGAAAAACAACCTGAACCCCAGCTG...GTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACCTGAGAGAGGGGGCAGCGTCCTaGAAGTCCCTGAAGGGCACA +
Preference number: 5 (lower is better)
Translates to: KMQRHRSLESQGQHRHLREGAAS*KSLKGT
Trigger: TGTGCCCTTCAGGGACTTCAAGGACGCTGCCCCCTC...TCTCAGGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS CCA 90 bp CCTGTGGATGTCACAGCTGCACAAAGAATGCAAGGACAGGCGGAATaGCTCCCAGCTGGGGTTCAGGTTGTTTTTCACCACCTCAGTCCT +
Preference number: 5 (lower is better)
Translates to: PVDVTAAQRMQGQAE*LPAGVQVVFHHLSP
Trigger: AGGACTGAGGTGGTGAAAAACAACCTGAACCCCAGCTGGGAGCCATTCCGCCTGTCCTTGCATTCTTTGTGCAGCTGTGACATCCACAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGTGTATGCATCTGCCCTGGCCAAGGCTATAGAGTCCATAAGGTTGGCCCTTTGGGGAGAAGACTGGGCTaGAACAGGAGCGAAGCACCT +
Preference number: 5 (lower is better)
Translates to: SVCICPGQGYRVHKVGPLGRRLG*NRSEAP
Trigger: AGGTGCTTCGCTCCTGTTCAAGCCCAGTCTTCTCCC...CAAAGGGCCAACCTTATGGACTCTATAGCCTTGGCCAGGGCAGATGCATACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165725.8
CDS-3UTR CAA 90 bp GAGAGGAGCAGGACAGCAAAAACACCACCACCAGCATTACGCCAGCCAAGATGGATCGTGATAGTAGACTaGCCCGCCGTCTTCCCATTC +
Preference number: 5 (lower is better)
Translates to: ERSRTAKTPPPALRQPRWIVIVD*PAVFPF
Trigger: GAATGGGAAGACGGCGGGCAAGTCTACTATCACGAT...CCATCTTGGCTGGCGTAATGCTGGTGGTGGTGTTTTTGCTGTCCTGCTCCTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGTCCTTGTTATCCAGCTaGTGGGCTCTGAAGGTAAGT +
Preference number: 5 (lower is better)
Translates to: VEGYRAWRDGTRAHHSLPSLLSS*WALKVS
Trigger: ACTTACCTTCAGAGCCCACAAGCTGGATAACAAGGA...CGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CACTGGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATCTCCTGCCCAGGGTTaGCGGTCCCCTCTTGCATTT +
Preference number: 5 (lower is better)
Translates to: HWNHKVSTGTERLKGCWLSPAQG*RSPLAF
Trigger: AAATGCAAGAGGGGACCGCAAACCCTGGGCAGGAGA...TAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp CAGGACAGCAAAAACACCACCACCAGCATTACGCCAGCCAAGATGGGCTATTCATCTCCTGCCCAGGGTTaGCGGTCCCCTCTTGCATTT +
Preference number: 5 (lower is better)
Translates to: QDSKNTTTSITPAKMGYSSPAQG*RSPLAF
Trigger: AAATGCAAGAGGGGACCGCAAACCCTGGGCAGGAGA...TGAATAGCCCATCTTGGCTGGCGTAATGCTGGTGGTGGTGTTTTTGCTGTCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCATTCTTGTCTCGGTACTaGGGGTTGATACAGTCCCAC +
Preference number: 5 (lower is better)
Translates to: GPAGHHWSKMQRHRSLESFLSRY*GLIQSH
Trigger: GTGGGACTGTATCAACCCCAAGTACCGAGACAAGAA...TGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp ATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACCCGCTTTTCTGGGTCAAAGTaGATAGCAAAGTCATGGGAG +
Preference number: 5 (lower is better)
Translates to: ISGLERWDQGPSLTSGTRFSGSK*IAKSWE
Trigger: CTCCCATGACTTTGCTATCAACTTTGACCCAGAAAA...GCGGGTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCATCGTGATAGTAGACTaGCCCGCCGTCTTCCCATTC +
Preference number: 5 (lower is better)
Translates to: QGTTGPKCRDTGHWNHKVIVIVD*PAVFPF
Trigger: GAATGGGAAGACGGCGGGCAAGTCTACTATCACGAT...GACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CCTGAGAGGAGCAGGACAGCAAAAACACCACCACCAGCATTACGCCAGCCAAGAGGCTCTGAAGGTAAGTaGCACATAGTCGTTGGTACC +
Preference number: 5 (lower is better)
Translates to: PERSRTAKTPPPALRQPRGSEGK*HIVVGT
Trigger: GGTACCAACGACTATGTGCAACTTACCTTCAGAGCC...TCTTGGCTGGCGTAATGCTGGTGGTGGTGTTTTTGCTGTCCTGCTCCTCTCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGATGAAGGGGTCAGACTaGCTGAACAGATCCTTGTTA +
Preference number: 5 (lower is better)
Translates to: VEGYRAWRDGTRAHHSLPMKGSD*LNRSLL
Trigger: TAACAAGGATCTGTTCAGCAAGTCTGACCCCTTCAT...CGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATGTCGAGAGGCAAGTCCTCCAGACCAGTaGGTCACTCTGGTCTCCATT +
Preference number: 5 (lower is better)
Translates to: KVSTGTERLKGCWLCREASPPDQ*VTLVSI
Trigger: AATGGAGACCAGAGTGACCAACTGGTCTGGAGGACT...TGCCTCTCGACATAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp GCAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCTGGGGTTCAGGTaGTTTTTCACCACCTCAGTC +
Preference number: 5 (lower is better)
Translates to: AGHHWSKMQRHRSLESQGQLGFR*FFTTSV
Trigger: GACTGAGGTGGTGAAAAACAACCTGAACCCCAGCTG...ACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCACTTCCGGGACTTTTCTGGGTCAAAGTaGATAGCAAAGTCATGGGAG +
Preference number: 5 (lower is better)
Translates to: RDIGLGEMGPGPITHFRDFSGSK*IAKSWE
Trigger: CTCCCATGACTTTGCTATCAACTTTGACCCAGAAAA...GTCCCGGAAGTGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp GCCCATCACTCACTTCCGGGACCCGCAGGGCACCACTGGTCCAAAATGCAGAGATTTTCTGGGTCAAAGTaGATAGCAAAGTCATGGGAG +
Preference number: 5 (lower is better)
Translates to: AHHSLPGPAGHHWSKMQRFSGSK*IAKSWE
Trigger: CTCCCATGACTTTGCTATCAACTTTGACCCAGAAAA...TCTCTGCATTTTGGACCAGTGGTGCCCTGCGGGTCCCGGAAGTGAGTGATGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CTCAGAGTTGAGGGATATCGGGCTTGGAGAGATGGGACCAGGGCCCATCACTCAAATGGCTTAGTGACCTaGGTTTGTGACACAATCTGG +
Preference number: 5 (lower is better)
Translates to: LRVEGYRAWRDGTRAHHSNGLVT*VCDTIW
Trigger: CCAGATTGTGTCACAAACCAAGGTCACTAAGCCATT...TGAGTGATGGGCCCTGGTCCCATCTCTCCAAGCCCGATATCCCTCAACTCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACTGAGATCGTGATAGTAGACTaGCCCGCCGTCTTCCCATTC +
Preference number: 5 (lower is better)
Translates to: PKCRDTGHWNHKVSTGTEIVIVD*PAVFPF
Trigger: GAATGGGAAGACGGCGGGCAAGTCTACTATCACGAT...CTCAGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp CACTGGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTACAGCTGGGGTTCAGGTaGTTTTTCACCACCTCAGTC +
Preference number: 5 (lower is better)
Translates to: HWNHKVSTGTERLKGCWLQLGFR*FFTTSV
Trigger: GACTGAGGTGGTGAAAAACAACCTGAACCCCAGCTG...TAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp CACTGGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTAGTTTGCGGTCCCCTCTaGCATTTCCTGGAATGTGCT +
Preference number: 5 (lower is better)
Translates to: HWNHKVSTGTERLKGCWLVCGPL*HFLECA
Trigger: AGCACATTCCAGGAAATGCAAGAGGGGACCGCAAAC...TAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp GGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACTTCTCGGTACTTGGGGTaGATACAGTCCCACTGCATC +
Preference number: 5 (lower is better)
Translates to: GPKCRDTGHWNHKVSTGTSRYLG*IQSHCI
Trigger: GATGCAGTGGGACTGTATCAACCCCAAGTACCGAGA...AGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp ATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACCTGAGAGGATTCTTGTCTCGGTACTaGGGGTTGATACAGTCCCAC +
Preference number: 5 (lower is better)
Translates to: MQRHRSLESQGQHRHLRGFLSRY*GLIQSH
Trigger: GTGGGACTGTATCAACCCCAAGTACCGAGACAAGAA...TCCTCTCAGGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTATGTCGACAGCTGGGGTTCAGGTaGTTTTTCACCACCTCAGTC +
Preference number: 5 (lower is better)
Translates to: NHKVSTGTERLKGCWLCRQLGFR*FFTTSV
Trigger: GACTGAGGTGGTGAAAAACAACCTGAACCCCAGCTG...TCGACATAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp CGCCAGCCAAGATGGGCTATTCAGAAGCTCTGCTTTGAACACCTTTTGTATCCCTCTCGGTACTTGGGGTaGATACAGTCCCACTGCATC +
Preference number: 5 (lower is better)
Translates to: RQPRWAIQKLCFEHLLYPSRYLG*IQSHCI
Trigger: GATGCAGTGGGACTGTATCAACCCCAAGTACCGAGA...GGGATACAAAAGGTGTTCAAAGCAGAGCTTCTGAATAGCCCATCTTGGCTGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCATTGCTGAACAGATCCTaGTTATCCAGCTTGTGGGCT +
Preference number: 5 (lower is better)
Translates to: RAPLVQNAETQVTGITRSLLNRS*LSSLWA
Trigger: AGCCCACAAGCTGGATAACAAGGATCTGTTCAGCAA...TGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CAGGGCACCACTGGTCCAAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCATGAAGGGGTCAGACTaGCTGAACAGATCCTTGTTA +
Preference number: 5 (lower is better)
Translates to: QGTTGPKCRDTGHWNHKVMKGSD*LNRSLL
Trigger: TAACAAGGATCTGTTCAGCAAGTCTGACCCCTTCAT...GACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTTGGACCAGTGGTGCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp CACTGGAATCACAAGGTCAGCACAGGCACTGAGAGACTGAAGGGGTGTTGGTTAATGAAGGGGTCAGACTaGCTGAACAGATCCTTGTTA +
Preference number: 5 (lower is better)
Translates to: HWNHKVSTGTERLKGCWLMKGSD*LNRSLL
Trigger: TAACAAGGATCTGTTCAGCAAGTCTGACCCCTTCAT...TAACCAACACCCCTTCAGTCTCTCAGTGCCTGTGCTGACCTTGTGATTCCAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
CDS-3UTR CAA 90 bp AGATGGGCTATTCAGAAGCTCTGCTTTGAACACCTTTTGTATCCCCCAGAACTCTTGCTGAACAGATCCTaGTTATCCAGCTTGTGGGCT +
Preference number: 5 (lower is better)
Translates to: RWAIQKLCFEHLLYPPELLLNRS*LSSLWA
Trigger: AGCCCACAAGCTGGATAACAAGGATCTGTTCAGCAA...GAGTTCTGGGGGATACAAAAGGTGTTCAAAGCAGAGCTTCTGAATAGCCCATCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp AAAATGCAGAGACACAGGTCACTGGAATCACAAGGTCAGCACAGGCACCTGAGATTTTCTGGGTCAAAGTaGATAGCAAAGTCATGGGAG +
Preference number: 5 (lower is better)
Translates to: KMQRHRSLESQGQHRHLRFSGSK*IAKSWE
Trigger: CTCCCATGACTTTGCTATCAACTTTGACCCAGAAAA...TCTCAGGTGCCTGTGCTGACCTTGTGATTCCAGTGACCTGTGTCTCTGCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp TTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGGGTGGGAGAAGACTGGGCTaGAACAGGAGCGAAGCACCT +
Preference number: 5 (lower is better)
Translates to: FLLFTSIKSQPLEEVIEGGRRLG*NRSEAP
Trigger: AGGTGCTTCGCTCCTGTTCAAGCCCAGTCTTCTCCC...ACCCTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp TTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGGGTGTTTGCGGTCCCCTCTaGCATTTCCTGGAATGTGCT +
Preference number: 5 (lower is better)
Translates to: FLLFTSIKSQPLEEVIEGVCGPL*HFLECA
Trigger: AGCACATTCCAGGAAATGCAAGAGGGGACCGCAAAC...ACCCTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp TGGTTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGGTTTGCGGTCCCCTCTaGCATTTCCTGGAATGTGCT +
Preference number: 5 (lower is better)
Translates to: WFLLFTSIKSQPLEEVIEVCGPL*HFLECA
Trigger: AGCACATTCCAGGAAATGCAAGAGGGGACCGCAAAC...CTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS-3UTR CAA 90 bp TGGTTCCTTTTATTTACATCCATAAAGTCACAACCACTGGAGGAAGTTATTGAGTCCTTGTTATCCAGCTaGTGGGCTCTGAAGGTAAGT +
Preference number: 5 (lower is better)
Translates to: WFLLFTSIKSQPLEEVIESLLSS*WALKVS
Trigger: ACTTACCTTCAGAGCCCACAAGCTGGATAACAAGGA...CTCAATAACTTCCTCCAGTGGTTGTGACTTTATGGATGTAAATAAAAGGAACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS TCA 72 bp GCAAGGCCTGCAGGTAGTGGTTGGGCTGTCGGGGGCTaGGGCAGTGCAGAGACTGGCTGCTCCTTGGGTCCC +
Preference number: 6 (lower is better)
Translates to: ARPAGSGWAVGG*GSAETGCSLGP
Trigger: GGGACCCAAGGAGCAGCCAGTCTCTGCACTGCCTCAGCCCCCGACAGCCCAACCACTACCTGCAGGCCTTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS CAA 72 bp TGGCGTGGAGGGCCTGGGAGCCCCGGGACTGATACCTaGGCTGGCATAGTACTCTACCACCTGCCGTGGCAC +
Preference number: 6 (lower is better)
Translates to: WRGGPGSPGTDT*AGIVLYHLPWH
Trigger: GTGCCACGGCAGGTGGTAGAGTACTATGCCAGCCAAGGTATCAGTCCCGGGGCTCCCAGGCCCTCCACGCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS CAA 90 bp AGTCATAGCTGGCGTGGAGGGCCTGGGAGCCCCGGGACTGATACCTaGGCTGGCATAGTACTCTACCACCTGCCGTGGCACCTCTGCCAG +
Preference number: 6 (lower is better)
Translates to: SHSWRGGPGSPGTDT*AGIVLYHLPWHLCQ
Trigger: CTGGCAGAGGTGCCACGGCAGGTGGTAGAGTACTATGCCAGCCAAGGTATCAGTCCCGGGGCTCCCAGGCCCTCCACGCCAGCTATGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS CCA 72 bp CTTCGTGGCTTGGCCGGTGCTCTGCTCTCGCTGGGCTaGTTCAGCCACACGGTTGATGATAGGGGCCACGTT +
Preference number: 6 (lower is better)
Translates to: LRGLAGALLSLG*FSHTVDDRGHV
Trigger: AACGTGGCCCCTATCATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS GCA 72 bp GCACCAGCAGTACTGAATACTTCGTGGCTTGGCCGGTaGTCTGCTCTCGCTGGGCTGGTTCAGCCACACGGT +
Preference number: 6 (lower is better)
Translates to: APAVLNTSWLGR*SALAGLVQPHG
Trigger: ACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGAAGTATTCAGTACTGCTGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS CCA 72 bp GAATACTTCGTGGCTTGGCCGGTGCTCTGCTCTCGCTaGGCTGGTTCAGCCACACGGTTGATGATAGGGGCC +
Preference number: 6 (lower is better)
Translates to: EYFVAWPVLCSR*AGSATRLMIGA
Trigger: GGCCCCTATCATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGAAGTATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS CCA 72 bp ATACGTGGCTTGGCCGGTGCTCTGCTCTCGCTGGGCTaGTTCAGCCACACGGTTGATGATAGGGGCCACGTT +
Preference number: 6 (lower is better)
Translates to: IRGLAGALLSLG*FSHTVDDRGHV
Trigger: AACGTGGCCCCTATCATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
CDS CCA 72 bp ACTGAATACGTGGCTTGGCCGGTGCTCTGCTCTCGCTaGGCTGGTTCAGCCACACGGTTGATGATAGGGGCC +
Preference number: 6 (lower is better)
Translates to: TEYVAWPVLCSR*AGSATRLMIGA
Trigger: GGCCCCTATCATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGTATTCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
CDS GCA 72 bp ACCAGCAGTACTGAATACGTGGCTTGGCCGGTGCTCTaGTCTCGCTGGGCTGGTTCAGCCACACGGTTGATG +
Preference number: 6 (lower is better)
Translates to: TSSTEYVAWPVL*SRWAGSATRLM
Trigger: CATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGTATTCAGTACTGCTGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
CDS GCA 72 bp AGCAGTACTGAATACTTCGTGGCTTGGCCGGTGCTCTaGTCTCGCTGGGCTGGTTCAGCCACACGGTTGATG +
Preference number: 6 (lower is better)
Translates to: SSTEYFVAWPVL*SRWAGSATRLM
Trigger: CATCAACCGTGTGGCTGAACCAGCCCAGCGAGAGCAGAGCACCGGCCAAGCCACGAAGTATTCAGTACTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS CAA 72 bp AGTATTCAATGGCCAGCACCCGGGAGAAGACTGGGCTaGAACAGGAGCGAAGCACCTCCGTGCGTTCCACCT +
Preference number: 6 (lower is better)
Translates to: SIQWPAPGRRLG*NRSEAPPCVPP
Trigger: AGGTGGAACGCACGGAGGTGCTTCGCTCCTGTTCAAGCCCAGTCTTCTCCCGGGTGCTGGCCATTGAATACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000165725.8
ENSMUST00000171643.2
CDS CAA 72 bp CCACTGCATCTCCTGCCCAGGGTTTGCGGTCCCCTCTaGCATTTCCTGGAATGTGCTGGTGAACTCGCCGAT +
Preference number: 6 (lower is better)
Translates to: PLHLLPRVCGPL*HFLECAGELAD
Trigger: ATCGGCGAGTTCACCAGCACATTCCAGGAAATGCAAGAGGGGACCGCAAACCCTGGGCAGGAGATGCAGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS CAA 72 bp CAAACTGGACAATGTCACGGGCTGCAGGTACCCCCTTaGGGCAACGCAGGGGACCATCATCTCCGTCCAGTA +
Preference number: 6 (lower is better)
Translates to: QTGQCHGLQVPP*GNAGDHHLRPV
Trigger: TACTGGACGGAGATGATGGTCCCCTGCGTTGCCCAAAGGGGGTACCTGCAGCCCGTGACATTGTCCAGTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS TCA 72 bp TTCGGGTCTCTGCCATATCACTCACCACACCGTCAGTaGGCACCAGCAGTACTGAATACGTGGCTTGGCCGG +
Preference number: 6 (lower is better)
Translates to: FGSLPYHSPHRQ*APAVLNTWLGR
Trigger: CCGGCCAAGCCACGTATTCAGTACTGCTGGTGCTCACTGACGGTGTGGTGAGTGATATGGCAGAGACCCGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000165262.8
CDS CCA 72 bp CCACTGCTCATCCGAGTAGAGTTTGAGCAGCACACATaGATGCGGCTTTGTGAGCGTGTCTCGGTCCAGCAG +
Preference number: 6 (lower is better)
Translates to: PLLIRVEFEQHT*MRLCERVSVQQ
Trigger: CTGCTGGACCGAGACACGCTCACAAAGCCGCATCCATGTGTGCTGCTCAAACTCTACTCGGATGAGCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000165725.8
ENSMUST00000171643.2
CDS TCA 72 bp GCTGGATCTGAGGCAAGCAGCGGCGGTAGGAGGCTATaGCCCCTGAGATCTCTTCACATTCAGGATTTTCTG +
Preference number: 6 (lower is better)
Translates to: AGSEASSGGRRL*PLRSLHIQDFL
Trigger: CAGAAAATCCTGAATGTGAAGAGATCTCAGGGGTCATAGCCTCCTACCGCCGCTGCTTGCCTCAGATCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS TCA 72 bp TTCGGGTCTCTGCCATATCACTCACCACACCGTCAGTaGGCACCAGCAGTACTGAATACTTCGTGGCTTGGC +
Preference number: 6 (lower is better)
Translates to: FGSLPYHSPHRQ*APAVLNTSWLG
Trigger: GCCAAGCCACGAAGTATTCAGTACTGCTGGTGCTCACTGACGGTGTGGTGAGTGATATGGCAGAGACCCGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000171643.2
CDS CCA 72 bp GTCACAGCTGCACAAAGAATGCAAGGACAGGCGGAATaGCTCCCAGCTGGGGTTCAGGTTGTTTTTCACCAC +
Preference number: 6 (lower is better)
Translates to: VTAAQRMQGQAE*LPAGVQVVFHH
Trigger: GTGGTGAAAAACAACCTGAACCCCAGCTGGGAGCCATTCCGCCTGTCCTTGCATTCTTTGTGCAGCTGTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS CAA 72 bp GTCTTCCCATTCTTCAGCAGTAATGGCTTAGTGACCTaGGTTTGTGACACAATCTGGCCCAAGGTGCACTCC +
Preference number: 6 (lower is better)
Translates to: VFPFFSSNGLVT*VCDTIWPKVHS
Trigger: GGAGTGCACCTTGGGCCAGATTGTGTCACAAACCAAGGTCACTAAGCCATTACTGCTGAAGAATGGGAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS TCA 72 bp GCTTTCCACTGGAGTCATAGTCATATACCAGGAACTTaGGCGGCCTGTGGATGTCACAGCTGCACAAAGAAT +
Preference number: 6 (lower is better)
Translates to: AFHWSHSHIPGT*AACGCHSCTKN
Trigger: ATTCTTTGTGCAGCTGTGACATCCACAGGCCGCTCAAGTTCCTGGTATATGACTATGACTCCAGTGGAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2
CDS CAA 72 bp CAGGTTGTTTTTCACCACCTCAGTCCTCCAGACCAGTaGGTCACTCTGGTCTCCATTGGTCTTATAAATCTC +
Preference number: 6 (lower is better)
Translates to: QVVFHHLSPPDQ*VTLVSIGLINL
Trigger: GAGATTTATAAGACCAATGGAGACCAGAGTGACCAACTGGTCTGGAGGACTGAGGTGGTGAAAAACAACCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000074225.11
ENSMUST00000163767.8
ENSMUST00000165262.8
ENSMUST00000171643.2