Pregenerated sensors for CPM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020183Ensembl transcript IDs: ENSMUST00000020399.6
Found 129 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGGAGCAGGAGAGCTTTGGGCAGCCCAGCTCCCCAGGTTCTGTGTaGAAGACGGACTTGGCGAAAATACCCATGAGCAGCAGCTGGGTC | + |
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Preference number: 1 (lower is better) Translates to: REQESFGQPSSPGSV*KTDLAKIPMSSSWV Trigger: GACCCAGCTGCTGCTCATGGGTATTTTCGCCAAGTCCGTCTTCCACACAGAACCTGGGGAGCTGGGCTGCCCAAAGCTCTCCTGCTCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 90 bp | ATCGTAGTCAGGTGGGTGTGTCTGGTGAGCAGCTGGAGTTGCATCTaGGGCTCAGGCAAGGGACTGGGGTTATACAGGAGGGGTCATCTT | + |
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Preference number: 1 (lower is better) Translates to: IVVRWVCLVSSWSCI*GSGKGLGLYRRGHL Trigger: AAGATGACCCCTCCTGTATAACCCCAGTCCCTTGCCTGAGCCTCAGATGCAACTCCAGCTGCTCACCAGACACACCCACCTGACTACGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 90 bp | AGGGTCTGTCTGTGTAAACGAAGACATCCGCCCACCTCTGCCTTCTaGGTGTTGGGATTAAAGGTGTGCGCCAACACGCCCAGCTTTCTC | + |
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Preference number: 1 (lower is better) Translates to: RVCLCKRRHPPTSAF*VLGLKVCANTPSFL Trigger: GAGAAAGCTGGGCGTGTTGGCGCACACCTTTAATCCCAACACTCAGAAGGCAGAGGTGGGCGGATGTCTTCGTTTACACAGACAGACCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 90 bp | CAGCATCATTCTCTCCCGTACCTGAGGTCACCAGGAAGGCAGAATTaGGCTCACAAACCTTCACTAGATGCCCCCTCCGAGACTGAGAAT | + |
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Preference number: 1 (lower is better) Translates to: QHHSLPYLRSPGRQN*AHKPSLDAPSETEN Trigger: ATTCTCAGTCTCGGAGGGGGCATCTAGTGAAGGTTTGTGAGCTCAATTCTGCCTTCCTGGTGACCTCAGGTACGGGAGAGAATGATGCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CCA 90 bp | ACAGCAGCTTCCAGTGACTGGATATGGGAATCGAACAGCCTTGCATaGCGTCTCAACAGTCAACCGGATGAACTGCAGTTCCTAGGCATC | + |
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Preference number: 1 (lower is better) Translates to: TAASSDWIWESNSLA*RLNSQPDELQFLGI Trigger: GATGCCTAGGAACTGCAGTTCATCCGGTTGACTGTTGAGACGCCATGCAAGGCTGTTCGATTCCCATATCCAGTCACTGGAAGCTGCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CCA 90 bp | AGTACTGGGATTAAAGGCGTGGTCCAGCACTGCCACCACTCAACCTaGGCACCTTTAATAGCTTCTGCTTCTGTGCTTTTAATGGCAGGA | + |
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Preference number: 1 (lower is better) Translates to: STGIKGVVQHCHHST*APLIASASVLLMAG Trigger: TCCTGCCATTAAAAGCACAGAAGCAGAAGCTATTAAAGGTGCCCAGGTTGAGTGGTGGCAGTGCTGGACCACGCCTTTAATCCCAGTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CCA 90 bp | TCTGAGAAATTATTTCTCAAGCAGATCCTTGTCTTAAAGAGCTCATaGCGTGCTAGAGAAGGCCAGCACAGAGCAGTTCCACACCACGAT | + |
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Preference number: 1 (lower is better) Translates to: SEKLFLKQILVLKSS*RAREGQHRAVPHHD Trigger: ATCGTGGTGTGGAACTGCTCTGTGCTGGCCTTCTCTAGCACGCCATGAGCTCTTTAAGACAAGGATCTGCTTGAGAAATAATTTCTCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CCA 90 bp | ACCAAGTTTGCTCTTACATATCTTACTGGTTTTGCTTTTCTAAGATaGCTAGTCCAGGCTAGCCTTGAGCTGTGTCGATCTTGCCTCAGC | + |
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Preference number: 1 (lower is better) Translates to: TKFALTYLTGFAFLR*LVQASLELCRSCLS Trigger: GCTGAGGCAAGATCGACACAGCTCAAGGCTAGCCTGGACTAGCCATCTTAGAAAAGCAAAACCAGTAAGATATGTAAGAGCAAACTTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 90 bp | GGAATCTTAGGAAAGGGTCAACCAGTCAGAACTCAGAACACCAGCTaGTGGCGAACCAAGTTTGCTCTTACATATCTTACTGGTTTTGCT | + |
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Preference number: 1 (lower is better) Translates to: GILGKGQPVRTQNTS*WRTKFALTYLTGFA Trigger: AGCAAAACCAGTAAGATATGTAAGAGCAAACTTGGTTCGCCATCAGCTGGTGTTCTGAGTTCTGACTGGTTGACCCTTTCCTAAGATTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR GCA 90 bp | CGCATGTTCTTACTTCCTGTGGGAAATGCATGTCACTTAGAAACCTaGACCTCGGAGTTACTGTTAATGTTCCTGTTTGATATTTATCCT | + |
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Preference number: 1 (lower is better) Translates to: RMFLLPVGNACHLET*TSELLLMFLFDIYP Trigger: AGGATAAATATCAAACAGGAACATTAACAGTAACTCCGAGGTGCAGGTTTCTAAGTGACATGCATTTCCCACAGGAAGTAAGAACATGCG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CCA 90 bp | TGCCTTTCCCTCAAGCCTCACAGCTCACCCATTTGCATTTATCTTTaGATTTTGTTCTTTGACATACACGTGAAAAGTGTGTATGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: CLSLKPHSSPICIYL*ILFFDIHVKSVYVC Trigger: ACACACATACACACTTTTCACGTGTATGTCAAAGAACAAAATCCAAAGATAAATGCAAATGGGTGAGCTGTGAGGCTTGAGGGAAAGGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 90 bp | GCCTCACAGCTCACCCATTTGCATTTATCTTTGGATTTTGTTCTTTaGCATACACGTGAAAAGTGTGTATGTGTGTGTGTGTGTACTAGT | + |
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Preference number: 1 (lower is better) Translates to: ASQLTHLHLSLDFVL*HTREKCVCVCVCTS Trigger: ACTAGTACACACACACACACATACACACTTTTCACGTGTATGTCAAAGAACAAAATCCAAAGATAAATGCAAATGGGTGAGCTGTGAGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR GCA 90 bp | AAGGTATATTGCTTTCAAAACAGTTACAGACCCAAGTATTCCTTCTaGTTTCTCTACCTGGCAGAGGGCAACAGAATAATTTCCTGGTTA | + |
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Preference number: 1 (lower is better) Translates to: KVYCFQNSYRPKYSF*FLYLAEGNRIISWL Trigger: TAACCAGGAAATTATTCTGTTGCCCTCTGCCAGGTAGAGAAAGCAGAAGGAATACTTGGGTCTGTAACTGTTTTGAAAGCAATATACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 90 bp | TTACACTGGGTTTTGATATATATTTCTGATTTAAGTAATGTAACCTaGATATGGACACAGCGGACCAGGTCTGTAATAGCTACTCCAGCG | + |
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Preference number: 1 (lower is better) Translates to: LHWVLIYISDLSNVT*IWTQRTRSVIATPA Trigger: CGCTGGAGTAGCTATTACAGACCTGGTCCGCTGTGTCCATATTCAGGTTACATTACTTAAATCAGAAATATATATCAAAACCCAGTGTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR GCA 90 bp | ACCCATGAGCAGCAGCTGGGTCAGCGGCGGAGGGACGCTAACTGGCCTGGAGAGGACTGTGGCATCAGGTaGAGGGGGCAAGGGCAAAGG | + |
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Preference number: 2 (lower is better) Translates to: THEQQLGQRRRDANWPGEDCGIR*RGQGQR Trigger: CCTTTGCCCTTGCCCCCTGCACCTGATGCCACAGTC...CTCTCCAGGCCAGTTAGCGTCCCTCCGCCGCTGACCCAGCTGCTGCTCATGGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR CCA 90 bp | ACCCATGAGCAGCAGCTGGGTCAGCGGCGGAGGGACGCTAACTGGCCTGGAGAGGGCATCGTAGTCAGGTaGGTGTGTCTGGTGAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: THEQQLGQRRRDANWPGEGIVVR*VCLVSS Trigger: GCTGCTCACCAGACACACCCACCTGACTACGATGCC...CTCTCCAGGCCAGTTAGCGTCCCTCCGCCGCTGACCCAGCTGCTGCTCATGGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR TCA 90 bp | AGCGGCGGAGGGACGCTAACTGGCCTGGAGAGGCTGTATACAGCAGCTTCCAGTGGTGGGTGTGTCTGGTaGGCAGCTGGAGTTGCATCT | + |
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Preference number: 2 (lower is better) Translates to: SGGGTLTGLERLYTAASSGGCVW*AAGVAS Trigger: AGATGCAACTCCAGCTGCTCACCAGACACACCCACC...ACTGGAAGCTGCTGTATACAGCCTCTCCAGGCCAGTTAGCGTCCCTCCGCCGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CAA 90 bp | CCTAGGCATCGTAGTCAGGTGGGTGTGTCTGGTGAGCAGCTGGAGTaGCATCTGAGGCTCAGGCAAGGGACTGGGGTTATACAGGAGGGG | + |
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Preference number: 2 (lower is better) Translates to: PRHRSQVGVSGEQLE*HLRLRQGTGVIQEG Trigger: CCCCTCCTGTATAACCCCAGTCCCTTGCCTGAGCCTCAGATGCAACTCCAGCTGCTCACCAGACACACCCACCTGACTACGATGCCTAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR CCA 90 bp | AGCGGCGGAGGGACGCTAACTGGCCTGGAGAGGCTGTATACAGCAGCTTCCAGTATCTTCGTAGGACTGTaGCATCAGGTGCAGGGGGCA | + |
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Preference number: 2 (lower is better) Translates to: SGGGTLTGLERLYTAASSIFVGL*HQVQGA Trigger: TGCCCCCTGCACCTGATGCCACAGTCCTACGAAGAT...ACTGGAAGCTGCTGTATACAGCCTCTCCAGGCCAGTTAGCGTCCCTCCGCCGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR CCA 90 bp | TCTTGGAACTCACTGTGTAGACCAGGCAGGCTGGATTTGAACTCAGAGTCCCCTGGAGCAGGAGAGCTTTaGGCAGCCCAGCTCCCCAGG | + |
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Preference number: 2 (lower is better) Translates to: SWNSLCRPGRLDLNSESPGAGEL*AAQLPR Trigger: CCTGGGGAGCTGGGCTGCCCAAAGCTCTCCTGCTCC...AGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTTCCAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR TCA 90 bp | AAAGGCGTGGTCCAGCACTGCCACCACTCAACCTGGGCACCTTTAATAGCTTCTGTGGTGGCTGGGAATTaGCCTCAGGACCTCTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: KGVVQHCHHSTWAPLIASVVAGN*PQDLWK Trigger: CTTCCAGAGGTCCTGAGGTCAATTCCCAGCCACCAC...AGAAGCTATTAAAGGTGCCCAGGTTGAGTGGTGGCAGTGCTGGACCACGCCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR CCA 90 bp | AAAGGCGTGGTCCAGCACTGCCACCACTCAACCTGGGCACCTTTAATAGCTTCTCCTGCCTCTGCTGCCTaGGTGCTAGGATTTTACCAT | + |
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Preference number: 2 (lower is better) Translates to: KGVVQHCHHSTWAPLIASPASAA*VLGFYH Trigger: ATGGTAAAATCCTAGCACCCAGGCAGCAGAGGCAGG...AGAAGCTATTAAAGGTGCCCAGGTTGAGTGGTGGCAGTGCTGGACCACGCCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR TCA 90 bp | CCTGTGCAAAGCCCTGGCACAGTCTCTGGTAAGACACGGGCACTTGCAAGTTGTTACAGCAGCTTCCAGTaGCTGGATATGGGAATCGAA | + |
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Preference number: 2 (lower is better) Translates to: PVQSPGTVSGKTRALASCYSSFQ*LDMGIE Trigger: TTCGATTCCCATATCCAGTCACTGGAAGCTGCTGTA...ACAACTTGCAAGTGCCCGTGTCTTACCAGAGACTGTGCCAGGGCTTTGCACAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR CCA 90 bp | GCTTCCAGTGACTGGATATGGGAATCGAACAGCCTTGCATGGCGTCTCAACAGTTTTCTTACAAGTGTTTaGGACTCCTTCGGGGTGGCG | + |
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Preference number: 2 (lower is better) Translates to: ASSDWIWESNSLAWRLNSFLTSV*DSFGVA Trigger: CGCCACCCCGAAGGAGTCCCAAACACTTGTAAGAAA...ACTGTTGAGACGCCATGCAAGGCTGTTCGATTCCCATATCCAGTCACTGGAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR GCA 90 bp | CCTGTGCAAAGCCCTGGCACAGTCTCTGGTAAGACACGGGCACTTGCAAGTTGTACTTCCTGTGGGAAATaGATGTCACTTAGAAACCTG | + |
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Preference number: 2 (lower is better) Translates to: PVQSPGTVSGKTRALASCTSCGK*MSLRNL Trigger: CAGGTTTCTAAGTGACATGCATTTCCCACAGGAAGT...ACAACTTGCAAGTGCCCGTGTCTTACCAGAGACTGTGCCAGGGCTTTGCACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR TCA 90 bp | AGAGCACTTACTGTGTTGTGTTTAGGGAGCAGGAGAGCTTTGGGCAGCCCAGCTCCACTTTATCCAGACTaGAGATGGATTTGGTCGTTA | + |
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Preference number: 2 (lower is better) Translates to: RALTVLCLGSRRALGSPAPLYPD*RWIWSL Trigger: TAACGACCAAATCCATCTTCAGTCTGGATAAAGTGG...AGCTGGGCTGCCCAAAGCTCTCCTGCTCCCTAAACACAACACAGTAAGTGCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR GCA 90 bp | AACTCACTGTGTAGACCAGGCAGGCTGGATTTGAACTCAGAGTCCCCTCTGCCTTGTCACTTAGAAACCTaGACCTCGGAGTTACTGTTA | + |
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Preference number: 2 (lower is better) Translates to: NSLCRPGRLDLNSESPLPCHLET*TSELLL Trigger: TAACAGTAACTCCGAGGTGCAGGTTTCTAAGTGACA...AGGCAGAGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR CCA 90 bp | AACTCACTGTGTAGACCAGGCAGGCTGGATTTGAACTCAGAGTCCCCTCTGCCTGATCCAAAGCCAGTTTaGCTTACTATGAGTTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: NSLCRPGRLDLNSESPLPDPKPV*LTMSSK Trigger: CTTGGAACTCATAGTAAGCCAAACTGGCTTTGGATC...AGGCAGAGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR CCA 90 bp | AAAGGCGTGGTCCAGCACTGCCACCACTCAACCTGGGCACCTTTAATAGCTTCTGTTCACCACCACACCTaGCTTCGTCTTATATATATA | + |
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Preference number: 2 (lower is better) Translates to: KGVVQHCHHSTWAPLIASVHHHT*LRLIYI Trigger: TATATATATAAGACGAAGCCAGGTGTGGTGGTGAAC...AGAAGCTATTAAAGGTGCCCAGGTTGAGTGGTGGCAGTGCTGGACCACGCCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR GCA 90 bp | GCATGTCACTTAGAAACCTGCACCTCGGAGTTACTGTTAATGTTCCTGTTTGATGGAGACAGAGGCCACTaGATCTGTACCCACATCAGA | + |
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Preference number: 2 (lower is better) Translates to: ACHLETCTSELLLMFLFDGDRGH*ICTHIR Trigger: TCTGATGTGGGTACAGATGCAGTGGCCTCTGTCTCC...ATCAAACAGGAACATTAACAGTAACTCCGAGGTGCAGGTTTCTAAGTGACATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CAA 90 bp | AGACTGAAGATGGATTTGGTCGTTACAGGTCGCTCTAGGCCAGGTTaGGAAACATCCGGTTTTCTTCTTAAGGAAAACAGTGGAGTCTGT | + |
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Preference number: 2 (lower is better) Translates to: RLKMDLVVTGRSRPG*ETSGFLLKENSGVC Trigger: ACAGACTCCACTGTTTTCCTTAAGAAGAAAACCGGATGTTTCCAAACCTGGCCTAGAGCGACCTGTAACGACCAAATCCATCTTCAGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR TCA 90 bp | TTGTATATTTTTCCTAGAAACAGATACGTCTCAACCCAGCTTCAGCTCATACATTGGCGAAAATACCCATaGGCAGCAGCTGGGTCAGCG | + |
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Preference number: 2 (lower is better) Translates to: LYIFPRNRYVSTQLQLIHWRKYP*AAAGSA Trigger: CGCTGACCCAGCTGCTGCTCATGGGTATTTTCGCCA...ATGTATGAGCTGAAGCTGGGTTGAGACGTATCTGTTTCTAGGAAAAATATACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR TCA 90 bp | ACGCATTTACACAAAATTACTCAGATCCTTAGCGTTCTGGAAAGGTCTGTAGCGGCAGGAAACAAGACGTaGCACAATCAGAATCCAGAC | + |
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Preference number: 2 (lower is better) Translates to: THLHKITQILSVLERSVAAGNKT*HNQNPD Trigger: GTCTGGATTCTGATTGTGTCACGTCTTGTTTCCTGC...CGCTACAGACCTTTCCAGAACGCTAAGGATCTGAGTAATTTTGTGTAAATGCGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR GCA 90 bp | TTGTATATTTTTCCTAGAAACAGATACGTCTCAACCCAGCTTCAGCTCATACATTCCACCTGCCTCTGCTaGCTGGGTGCTAGGATTTTA | + |
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Preference number: 2 (lower is better) Translates to: LYIFPRNRYVSTQLQLIHSTCLC*LGARIL Trigger: TAAAATCCTAGCACCCAGGCAGCAGAGGCAGGTGGA...ATGTATGAGCTGAAGCTGGGTTGAGACGTATCTGTTTCTAGGAAAAATATACAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CAA 90 bp | GTTAAAAAGCTATGCAGACTATTGATATTAAAATATAGATTAGGTTaGGCACCAAGAAAGGGCACCAGGGTGCCCACGTATCTCTTTAGA | + |
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Preference number: 2 (lower is better) Translates to: VKKLCRLLILKYRLG*APRKGTRVPTYLFR Trigger: TCTAAAGAGATACGTGGGCACCCTGGTGCCCTTTCTTGGTGCCAAACCTAATCTATATTTTAATATCAATAGTCTGCATAGCTTTTTAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 72 bp | AGGTGGGTGTGTCTGGTGAGCAGCTGGAGTTGCATCTaGGGCTCAGGCAAGGGACTGGGGTTATACAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: RWVCLVSSWSCI*GSGKGLGLYRR Trigger: CCTCCTGTATAACCCCAGTCCCTTGCCTGAGCCTCAGATGCAACTCCAGCTGCTCACCAGACACACCCACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 72 bp | CCAGAAGGCAGCCTCGGATCCCATTACAGATGGCTGTaGGCCACCATGTGGTGGCTGGGAATTGACCTCAGG | + |
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Preference number: 3 (lower is better) Translates to: PEGSLGSHYRWL*ATMWWLGIDLR Trigger: CCTGAGGTCAATTCCCAGCCACCACATGGTGGCTCACAGCCATCTGTAATGGGATCCGAGGCTGCCTTCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 72 bp | CAGATGGCTGTGAGCCACCATGTGGTGGCTGGGAATTaGCCTCAGGACCTCTGGAAGAGCAGTCAGTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: QMAVSHHVVAGN*PQDLWKSSQCS Trigger: AGAGCACTGACTGCTCTTCCAGAGGTCCTGAGGTCAATTCCCAGCCACCACATGGTGGCTCACAGCCATCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CCA 72 bp | GCAGCTGGAGTTGCATCTGAGGCTCAGGCAAGGGACTaGGGTTATACAGGAGGGGTCATCTTCGTAGGACTG | + |
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Preference number: 3 (lower is better) Translates to: AAGVASEAQARD*GYTGGVIFVGL Trigger: CAGTCCTACGAAGATGACCCCTCCTGTATAACCCCAGTCCCTTGCCTGAGCCTCAGATGCAACTCCAGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR CAA 90 bp | CAGCCTCCCAAGCGCTGGGATAATAGTTCACCACCACACCTGGCTTCGTCTTATGGTGAGCAGCTGGAGTaGCATCTGAGGCTCAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: QPPKRWDNSSPPHLASSYGEQLE*HLRLRQ Trigger: TTGCCTGAGCCTCAGATGCAACTCCAGCTGCTCACC...ATAAGACGAAGCCAGGTGTGGTGGTGAACTATTATCCCAGCGCTTGGGAGGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 72 bp | CTGTGTAAACGAAGACATCCGCCCACCTCTGCCTTCTaGGTGTTGGGATTAAAGGTGTGCGCCAACACGCCC | + |
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Preference number: 3 (lower is better) Translates to: LCKRRHPPTSAF*VLGLKVCANTP Trigger: GGGCGTGTTGGCGCACACCTTTAATCCCAACACTCAGAAGGCAGAGGTGGGCGGATGTCTTCGTTTACACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 72 bp | TCTCTCCCGTACCTGAGGTCACCAGGAAGGCAGAATTaGGCTCACAAACCTTCACTAGATGCCCCCTCCGAG | + |
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Preference number: 3 (lower is better) Translates to: SLPYLRSPGRQN*AHKPSLDAPSE Trigger: CTCGGAGGGGGCATCTAGTGAAGGTTTGTGAGCTCAATTCTGCCTTCCTGGTGACCTCAGGTACGGGAGAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 72 bp | CTTGGAACTCACTGTGTAGACCAGGCAGGCTGGATTTaGACTCAGAGTCCCCTCTGCCTCTGCCTCTGGAGT | + |
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Preference number: 3 (lower is better) Translates to: LGTHCVDQAGWI*TQSPLCLCLWS Trigger: ACTCCAGAGGCAGAGGCAGAGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTTCCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR GCA 72 bp | GGGGGCAAGGGCAAAGGCACGGGAGACAGAGGCCACTaGATCTGTACCCACATCAGACATGTTTGTCCATTT | + |
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Preference number: 3 (lower is better) Translates to: GGKGKGTGDRGH*ICTHIRHVCPF Trigger: AAATGGACAAACATGTCTGATGTGGGTACAGATGCAGTGGCCTCTGTCTCCCGTGCCTTTGCCCTTGCCCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CCA 72 bp | GGCCTGGAGAGGCTGTATACAGCAGCTTCCAGTGACTaGATATGGGAATCGAACAGCCTTGCATGGCGTCTC | + |
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Preference number: 3 (lower is better) Translates to: GLERLYTAASSD*IWESNSLAWRL Trigger: GAGACGCCATGCAAGGCTGTTCGATTCCCATATCCAGTCACTGGAAGCTGCTGTATACAGCCTCTCCAGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR CCA 72 bp | CCCATTACAGATGGCTGTGAGCCACCATGTGGTGGCTaGGAATTGACCTCAGGACCTCTGGAAGAGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: PITDGCEPPCGG*ELTSGPLEEQS Trigger: TGACTGCTCTTCCAGAGGTCCTGAGGTCAATTCCCAGCCACCACATGGTGGCTCACAGCCATCTGTAATGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR TCA 72 bp | AACTGGCCTGGAGAGGCTGTATACAGCAGCTTCCAGTaGCTGGATATGGGAATCGAACAGCCTTGCATGGCG | + |
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Preference number: 3 (lower is better) Translates to: NWPGEAVYSSFQ*LDMGIEQPCMA Trigger: CGCCATGCAAGGCTGTTCGATTCCCATATCCAGTCACTGGAAGCTGCTGTATACAGCCTCTCCAGGCCAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| 3UTR-3UTR CAA 90 bp | CAGCCTCCCAAGCGCTGGGATAATAGTTCACCACCACACCTGGCTTCGTCTTATTTTGAAGGATCGGCCTaGAACTTGACCACCTGGAAC | + |
|
Preference number: 3 (lower is better) Translates to: QPPKRWDNSSPPHLASSYFEGSA*NLTTWN Trigger: GTTCCAGGTGGTCAAGTTCAAGGCCGATCCTTCAAA...ATAAGACGAAGCCAGGTGTGGTGGTGAACTATTATCCCAGCGCTTGGGAGGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR-3UTR CAA 90 bp | TCTTGGAACTCACTGTGTAGACCAGGCAGGCTGGATTTGAACTCAGAGTCCCCTCGCTCTAGGCCAGGTTaGGAAACATCCGGTTTTCTT | + |
|
Preference number: 3 (lower is better) Translates to: SWNSLCRPGRLDLNSESPRSRPG*ETSGFL Trigger: AAGAAAACCGGATGTTTCCAAACCTGGCCTAGAGCG...AGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTTCCAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR-3UTR CAA 90 bp | AACTCACTGTGTAGACCAGGCAGGCTGGATTTGAACTCAGAGTCCCCTCTGCCTAGAGCACTTACTGTGTaGTGTTTAGGGAGCAGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: NSLCRPGRLDLNSESPLPRALTV*CLGSRR Trigger: TCTCCTGCTCCCTAAACACAACACAGTAAGTGCTCT...AGGCAGAGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CCA 72 bp | GAGAGGCTGTATACAGCAGCTTCCAGTGACTGGATATaGGAATCGAACAGCCTTGCATGGCGTCTCAACAGT | + |
|
Preference number: 3 (lower is better) Translates to: ERLYTAASSDWI*ESNSLAWRLNS Trigger: ACTGTTGAGACGCCATGCAAGGCTGTTCGATTCCCATATCCAGTCACTGGAAGCTGCTGTATACAGCCTCTC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR-3UTR CAA 90 bp | AAAGGCGTGGTCCAGCACTGCCACCACTCAACCTGGGCACCTTTAATAGCTTCTTGTATGACTACATGGTaGCTGTCTTCAGACACACCA | + |
|
Preference number: 3 (lower is better) Translates to: KGVVQHCHHSTWAPLIASCMTTW*LSSDTP Trigger: TGGTGTGTCTGAAGACAGCAACCATGTAGTCATACA...AGAAGCTATTAAAGGTGCCCAGGTTGAGTGGTGGCAGTGCTGGACCACGCCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CCA 72 bp | ATTAAAGGCGTGGTCCAGCACTGCCACCACTCAACCTaGGCACCTTTAATAGCTTCTGCTTCTGTGCTTTTA | + |
|
Preference number: 3 (lower is better) Translates to: IKGVVQHCHHST*APLIASASVLL Trigger: TAAAAGCACAGAAGCAGAAGCTATTAAAGGTGCCCAGGTTGAGTGGTGGCAGTGCTGGACCACGCCTTTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR-3UTR CAA 90 bp | TCTTGGAACTCACTGTGTAGACCAGGCAGGCTGGATTTGAACTCAGAGTCCCCTTTTGGCCTTAGACCATaGGCAAGAGTAAATGCTCTT | + |
|
Preference number: 3 (lower is better) Translates to: SWNSLCRPGRLDLNSESPFGLRP*ARVNAL Trigger: AAGAGCATTTACTCTTGCCAATGGTCTAAGGCCAAA...AGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTTCCAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CCA 72 bp | TTATTTCTCAAGCAGATCCTTGTCTTAAAGAGCTCATaGCGTGCTAGAGAAGGCCAGCACAGAGCAGTTCCA | + |
|
Preference number: 3 (lower is better) Translates to: LFLKQILVLKSS*RAREGQHRAVP Trigger: TGGAACTGCTCTGTGCTGGCCTTCTCTAGCACGCCATGAGCTCTTTAAGACAAGGATCTGCTTGAGAAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR-3UTR CAA 90 bp | TCTTGGAACTCACTGTGTAGACCAGGCAGGCTGGATTTGAACTCAGAGTCCCCTGAATCACTTAGAAGCTaGTTAAACAAAAACCCGCAT | + |
|
Preference number: 3 (lower is better) Translates to: SWNSLCRPGRLDLNSESPESLRS*LNKNPH Trigger: ATGCGGGTTTTTGTTTAACAAGCTTCTAAGTGATTC...AGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTTCCAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR TCA 72 bp | GGAAAGGGTCAACCAGTCAGAACTCAGAACACCAGCTaGTGGCGAACCAAGTTTGCTCTTACATATCTTACT | + |
|
Preference number: 3 (lower is better) Translates to: GKGQPVRTQNTS*WRTKFALTYLT Trigger: AGTAAGATATGTAAGAGCAAACTTGGTTCGCCATCAGCTGGTGTTCTGAGTTCTGACTGGTTGACCCTTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR GCA 72 bp | CTGCCACCACTCAACCTGGGCACCTTTAATAGCTTCTaGTTCTGTGCTTTTAATGGCAGGAATCACTTAGAA | + |
|
Preference number: 3 (lower is better) Translates to: LPPLNLGTFNSF*FCAFNGRNHLE Trigger: TTCTAAGTGATTCCTGCCATTAAAAGCACAGAAGCAGAAGCTATTAAAGGTGCCCAGGTTGAGTGGTGGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR-3UTR CAA 90 bp | GTTACAGACCCAAGTATTCCTTCTGCTTTCTCTACCTGGCAGAGGGCAACAGAATCACAGCTCACCCATTaGCATTTATCTTTGGATTTT | + |
|
Preference number: 3 (lower is better) Translates to: VTDPSIPSAFSTWQRATESQLTH*HLSLDF Trigger: AAAATCCAAAGATAAATGCAAATGGGTGAGCTGTGA...TTCTGTTGCCCTCTGCCAGGTAGAGAAAGCAGAAGGAATACTTGGGTCTGTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR-3UTR CAA 90 bp | GCATGTCACTTAGAAACCTGCACCTCGGAGTTACTGTTAATGTTCCTGTTTGATCCACATCAGACATGTTaGTCCATTTTCTCTCATTTG | + |
|
Preference number: 3 (lower is better) Translates to: ACHLETCTSELLLMFLFDPHQTC*SIFSHL Trigger: CAAATGAGAGAAAATGGACAAACATGTCTGATGTGG...ATCAAACAGGAACATTAACAGTAACTCCGAGGTGCAGGTTTCTAAGTGACATGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CCA 72 bp | ATGCTCTTAGTCCCGTTATCTAGAAATTTCTTCCTTTaGGGAGAACCACTTATAGACAATATCAGCTCTCTA | + |
|
Preference number: 3 (lower is better) Translates to: MLLVPLSRNFFL*GEPLIDNISSL Trigger: TAGAGAGCTGATATTGTCTATAAGTGGTTCTCCCCAAAGGAAGAAATTTCTAGATAACGGGACTAAGAGCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR TCA 72 bp | AAAAGTGTGTATGTGTGTGTGTGTGTACTAGTAAGCTaGATGTTGCCAAACATAAAACGCATTTACACAAAA | + |
|
Preference number: 3 (lower is better) Translates to: KSVYVCVCVLVS*MLPNIKRIYTK Trigger: TTTTGTGTAAATGCGTTTTATGTTTGGCAACATTCAGCTTACTAGTACACACACACACACATACACACTTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR TCA 72 bp | GTTTTGATATATATTTCTGATTTAAGTAATGTAACCTaGATATGGACACAGCGGACCAGGTCTGTAATAGCT | + |
|
Preference number: 3 (lower is better) Translates to: VLIYISDLSNVT*IWTQRTRSVIA Trigger: AGCTATTACAGACCTGGTCCGCTGTGTCCATATTCAGGTTACATTACTTAAATCAGAAATATATATCAAAAC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR GCA 90 bp | ACCCATGAGCAGCAGCTGGGTCAGCGGCGGAGGGACGCTAACTGGCCTGGAGAGTGTTCCTTTGGAGTCTaGCCCACAACGAGAACCCAC | + |
|
Preference number: 4 (lower is better) Translates to: THEQQLGQRRRDANWPGECSFGV*PTTRTH Trigger: GTGGGTTCTCGTTGTGGGGCAGACTCCAAAGGAACA...CTCTCCAGGCCAGTTAGCGTCCCTCCGCCGCTGACCCAGCTGCTGCTCATGGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CCA 90 bp | GAAAATACCCATGAGCAGCAGCTGGGTCAGCGGCGGAGGGACGCTAACTGGCCTACCAGGGCACCCCCATaGAGATTCGCAGAGAGGACA | + |
|
Preference number: 4 (lower is better) Translates to: ENTHEQQLGQRRRDANWPTRAPP*RFAERT Trigger: TGTCCTCTCTGCGAATCTCCATGGGGGTGCCCTGGT...AGGCCAGTTAGCGTCCCTCCGCCGCTGACCCAGCTGCTGCTCATGGGTATTTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CCA 90 bp | AGCGGCGGAGGGACGCTAACTGGCCTGGAGAGGCTGTATACAGCAGCTTCCAGTCATTCCCCCTTGCAGTaGGTACCAGGAGTAGCCGTT | + |
|
Preference number: 4 (lower is better) Translates to: SGGGTLTGLERLYTAASSHSPLQ*VPGVAV Trigger: AACGGCTACTCCTGGTACCCACTGCAAGGGGGAATG...ACTGGAAGCTGCTGTATACAGCCTCTCCAGGCCAGTTAGCGTCCCTCCGCCGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR TCA 90 bp | AGCGGCGGAGGGACGCTAACTGGCCTGGAGAGGCTGTATACAGCAGCTTCCAGTTTTTCAGCCACTCCATaGTTGCCAGAGTCTCAGGTT | + |
|
Preference number: 4 (lower is better) Translates to: SGGGTLTGLERLYTAASSFSATP*LPESQV Trigger: AACCTGAGACTCTGGCAATCATGGAGTGGCTGAAAA...ACTGGAAGCTGCTGTATACAGCCTCTCCAGGCCAGTTAGCGTCCCTCCGCCGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR TCA 90 bp | GAAAATACCCATGAGCAGCAGCTGGGTCAGCGGCGGAGGGACGCTAACTGGCCTCATCGCAGCGGGAGGTaGAAATCCTTTTTAAGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: ENTHEQQLGQRRRDANWPHRSGR*KSFLRA Trigger: TGCTCTTAAAAAGGATTTTCACCTCCCGCTGCGATG...AGGCCAGTTAGCGTCCCTCCGCCGCTGACCCAGCTGCTGCTCATGGGTATTTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CAA 72 bp | CAGAATCCAGACCTGGGACCGAGAGCACTTACTGTGTaGTGTTTAGGGAGCAGGAGAGCTTTGGGCAGCCCA | + |
|
Preference number: 4 (lower is better) Translates to: QNPDLGPRALTV*CLGSRRALGSP Trigger: TGGGCTGCCCAAAGCTCTCCTGCTCCCTAAACACAACACAGTAAGTGCTCTCGGTCCCAGGTCTGGATTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR TCA 90 bp | AGCGGCGGAGGGACGCTAACTGGCCTGGAGAGGCTGTATACAGCAGCTTCCAGTTATTCGCCACGTATTTaGATTCTGGAATCCCGACTC | + |
|
Preference number: 4 (lower is better) Translates to: SGGGTLTGLERLYTAASSYSPRI*ILESRL Trigger: GAGTCGGGATTCCAGAATTCAAATACGTGGCGAATA...ACTGGAAGCTGCTGTATACAGCCTCTCCAGGCCAGTTAGCGTCCCTCCGCCGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CCA 90 bp | AACTCACTGTGTAGACCAGGCAGGCTGGATTTGAACTCAGAGTCCCCTCTGCCTGACTCTGTGTTCCTTTaGAGTCTGCCCCACAACGAG | + |
|
Preference number: 4 (lower is better) Translates to: NSLCRPGRLDLNSESPLPDSVFL*SLPHNE Trigger: CTCGTTGTGGGGCAGACTCCAAAGGAACACAGAGTC...AGGCAGAGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CAA 72 bp | CAGCTTCCAGTGACTGGATATGGGAATCGAACAGCCTaGCATGGCGTCTCAACAGTCAACCGGATGAACTGC | + |
|
Preference number: 4 (lower is better) Translates to: QLPVTGYGNRTA*HGVSTVNRMNC Trigger: GCAGTTCATCCGGTTGACTGTTGAGACGCCATGCAAGGCTGTTCGATTCCCATATCCAGTCACTGGAAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CAA 72 bp | AAAGCCCTGGCACAGTCTCTGGTAAGACACGGGCACTaGCAAGTTGTTTCAGTACCAAGTCTCCGGTTAGGC | + |
|
Preference number: 4 (lower is better) Translates to: KALAQSLVRHGH*QVVSVPSLRLG Trigger: GCCTAACCGGAGACTTGGTACTGAAACAACTTGCAAGTGCCCGTGTCTTACCAGAGACTGTGCCAGGGCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CCA 90 bp | TCTTGGAACTCACTGTGTAGACCAGGCAGGCTGGATTTGAACTCAGAGTCCCCTCTCCTTTTGTCATGTTaGGATTCCGGGAGGCGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: SWNSLCRPGRLDLNSESPLLLSC*DSGRRR Trigger: CCTACGCCTCCCGGAATCCCAACATGACAAAAGGAG...AGGGGACTCTGAGTTCAAATCCAGCCTGCCTGGTCTACACAGTGAGTTCCAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR GCA 90 bp | AGAGCACTTACTGTGTTGTGTTTAGGGAGCAGGAGAGCTTTGGGCAGCCCAGCTGTGCTGTCAATCAGATaGGTGATTTCCGGGTCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: RALTVLCLGSRRALGSPAVLSIR*VISGSF Trigger: GAAAGACCCGGAAATCACGCATCTGATTGACAGCAC...AGCTGGGCTGCCCAAAGCTCTCCTGCTCCCTAAACACAACACAGTAAGTGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CCA 90 bp | AGAGCACTTACTGTGTTGTGTTTAGGGAGCAGGAGAGCTTTGGGCAGCCCAGCTAGAGCACTGAAGGGCTaGGATTTCCCTGGAATAGTA | + |
|
Preference number: 4 (lower is better) Translates to: RALTVLCLGSRRALGSPARALKG*DFPGIV Trigger: TACTATTCCAGGGAAATCCCAGCCCTTCAGTGCTCT...AGCTGGGCTGCCCAAAGCTCTCCTGCTCCCTAAACACAACACAGTAAGTGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CCA 90 bp | AAAGGCGTGGTCCAGCACTGCCACCACTCAACCTGGGCACCTTTAATAGCTTCTCACGTATTTGAATTCTaGAATCCCGACTCTGTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: KGVVQHCHHSTWAPLIASHVFEF*NPDSVF Trigger: GAACACAGAGTCGGGATTCCAGAATTCAAATACGTG...AGAAGCTATTAAAGGTGCCCAGGTTGAGTGGTGGCAGTGCTGGACCACGCCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR TCA 90 bp | GCATGTCACTTAGAAACCTGCACCTCGGAGTTACTGTTAATGTTCCTGTTTGATGGTTCATGGAAGGCATaGTGTGGATCCGGGTGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: ACHLETCTSELLLMFLFDGSWKA*CGSGCC Trigger: ACAGCACCCGGATCCACATCATGCCTTCCATGAACC...ATCAAACAGGAACATTAACAGTAACTCCGAGGTGCAGGTTTCTAAGTGACATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CCA 90 bp | GCATGTCACTTAGAAACCTGCACCTCGGAGTTACTGTTAATGTTCCTGTTTGATGGCAGCCGAGTGGCTTaGCATGAATTTGTACAGCGG | + |
|
Preference number: 4 (lower is better) Translates to: ACHLETCTSELLLMFLFDGSRVA*HEFVQR Trigger: CCGCTGTACAAATTCATGCCAAGCCACTCGGCTGCC...ATCAAACAGGAACATTAACAGTAACTCCGAGGTGCAGGTTTCTAAGTGACATGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CAA 72 bp | CAGAGGCCACTGCATCTGTACCCACATCAGACATGTTaGTCCATTTTCTCTCATTTGGCCTTAGACCATTGG | + |
|
Preference number: 4 (lower is better) Translates to: QRPLHLYPHQTC*SIFSHLALDHW Trigger: CCAATGGTCTAAGGCCAAATGAGAGAAAATGGACAAACATGTCTGATGTGGGTACAGATGCAGTGGCCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CAA 72 bp | ATGGATTTGGTCGTTACAGGTCGCTCTAGGCCAGGTTaGGAAACATCCGGTTTTCTTCTTAAGGAAAACAGT | + |
|
Preference number: 4 (lower is better) Translates to: MDLVVTGRSRPG*ETSGFLLKENS Trigger: ACTGTTTTCCTTAAGAAGAAAACCGGATGTTTCCAAACCTGGCCTAGAGCGACCTGTAACGACCAAATCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR GCA 90 bp | GCATGTCACTTAGAAACCTGCACCTCGGAGTTACTGTTAATGTTCCTGTTTGATACAGTCTCATCTCCGTaGATATTCGCCACGTATTTG | + |
|
Preference number: 4 (lower is better) Translates to: ACHLETCTSELLLMFLFDTVSSP*IFATYL Trigger: CAAATACGTGGCGAATATGCACGGAGATGAGACTGT...ATCAAACAGGAACATTAACAGTAACTCCGAGGTGCAGGTTTCTAAGTGACATGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CCA 90 bp | GTTACAGACCCAAGTATTCCTTCTGCTTTCTCTACCTGGCAGAGGGCAACAGAAATATGCTTTCTGTCTTaGACTTCCACGATTACATTC | + |
|
Preference number: 4 (lower is better) Translates to: VTDPSIPSAFSTWQRATEICFLS*TSTITF Trigger: GAATGTAATCGTGGAAGTCCAAGACAGAAAGCATAT...TTCTGTTGCCCTCTGCCAGGTAGAGAAAGCAGAAGGAATACTTGGGTCTGTAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CAA 72 bp | CTATGCAGACTATTGATATTAAAATATAGATTAGGTTaGGCACCAAGAAAGGGCACCAGGGTGCCCACGTAT | + |
|
Preference number: 4 (lower is better) Translates to: LCRLLILKYRLG*APRKGTRVPTY Trigger: ATACGTGGGCACCCTGGTGCCCTTTCTTGGTGCCAAACCTAATCTATATTTTAATATCAATAGTCTGCATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR GCA 90 bp | CTGTACCCACATCAGACATGTTTGTCCATTTTCTCTCATTTGGCCTTAGACCATGCCAGAGTCTCAGGTTaGTTTGTTACATTGTTATTC | + |
|
Preference number: 4 (lower is better) Translates to: LYPHQTCLSIFSHLALDHARVSG*FVTLLF Trigger: GAATAACAATGTAACAAAGCAACCTGAGACTCTGGC...ATGGTCTAAGGCCAAATGAGAGAAAATGGACAAACATGTCTGATGTGGGTACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| 3UTR CAA 72 bp | CGTAGACAAATTGTTTTTCTTGTAGGGATATCTGTTTaGCTTCTGAACTTTCTTACAAGTGTTTGGGACTCC | + |
|
Preference number: 4 (lower is better) Translates to: RRQIVFLVGISV*LLNFLTSVWDS Trigger: GGAGTCCCAAACACTTGTAAGAAAGTTCAGAAGCAAAACAGATATCCCTACAAGAAAAACAATTTGTCTACG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CAA 90 bp | ACCCATGAGCAGCAGCTGGGTCAGCGGCGGAGGGACGCTAACTGGCCTGGAGAGATCGGGCACGAAGGATaGGATACGGAGATGGAATCC | + |
|
Preference number: 5 (lower is better) Translates to: THEQQLGQRRRDANWPGEIGHEG*DTEMES Trigger: GGATTCCATCTCCGTATCCAATCCTTCGTGCCCGAT...CTCTCCAGGCCAGTTAGCGTCCCTCCGCCGCTGACCCAGCTGCTGCTCATGGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS TCA 90 bp | GGATTGGATACGGAGATGGAATCCGGCTGCCATCGCAGCGGGAGGTaGAAATCCTTTTTAAGAGCACTGAAGGGCTGGGATTTCCCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: GLDTEMESGCHRSGR*KSFLRALKGWDFPG Trigger: TCCAGGGAAATCCCAGCCCTTCAGTGCTCTTAAAAAGGATTTTCACCTCCCGCTGCGATGGCAGCCGGATTCCATCTCCGTATCCAATCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS CCA 90 bp | GCACTGGGCCCAGATGTAGTTGTAATCTTGCATTCCCCCTTGCAGTaGGTACCAGGAGTAGCCGTTGATAATCCCGTTGGGGAAGTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: ALGPDVVVILHSPLQ*VPGVAVDNPVGEVP Trigger: AGGAACTTCCCCAACGGGATTATCAACGGCTACTCCTGGTACCCACTGCAAGGGGGAATGCAAGATTACAACTACATCTGGGCCCAGTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS CCA 90 bp | CATGAAAAACACGCCCAGACTAGGCTTTGTGGCAGCCGAGTGGCTTaGCATGAATTTGTACAGCGGAATCATCGGGCACGAAGGATTGGA | + |
|
Preference number: 5 (lower is better) Translates to: HEKHAQTRLCGSRVA*HEFVQRNHRARRIG Trigger: TCCAATCCTTCGTGCCCGATGATTCCGCTGTACAAATTCATGCCAAGCCACTCGGCTGCCACAAAGCCTAGTCTGGGCGTGTTTTTCATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS CCA 90 bp | AGAGTCATGAAAAACACGCCCAGACTAGGCTTTGTGGCAGCCGAGTaGCTTGGCATGAATTTGTACAGCGGAATCATCGGGCACGAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: RVMKNTPRLGFVAAE*LGMNLYSGIIGHEG Trigger: TCCTTCGTGCCCGATGATTCCGCTGTACAAATTCATGCCAAGCCACTCGGCTGCCACAAAGCCTAGTCTGGGCGTGTTTTTCATGACTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS-3UTR CAA 90 bp | CCTGTGCAAAGCCCTGGCACAGTCTCTGGTAAGACACGGGCACTTGCAAGTTGTGATGTAGTTGTAATCTaGCATTCCCCCTTGCAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: PVQSPGTVSGKTRALASCDVVVI*HSPLQW Trigger: CCACTGCAAGGGGGAATGCAAGATTACAACTACATC...ACAACTTGCAAGTGCCCGTGTCTTACCAGAGACTGTGCCAGGGCTTTGCACAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS TCA 90 bp | ACAGGTTTCTACCTCTCACAGATTTCCCGATGCTGTGCAAGTGCGTaGTCGAACTGTAGTTCTGAGCCACGCTCTTTAGGAACGCCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: TGFYLSQISRCCASA*SNCSSEPRSLGTPP Trigger: TGGAGGCGTTCCTAAAGAGCGTGGCTCAGAACTACAGTTCGATCACGCACTTGCACAGCATCGGGAAATCTGTGAGAGGTAGAAACCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS TCA 90 bp | GTTCTCGCCCTACAGTCTCATCTCCGTGCATATTCGCCACGTATTTaGATTCTGGAATCCCGACTCTGTGTTCCTTTGGAGTCTGCCCCA | + |
|
Preference number: 5 (lower is better) Translates to: VLALQSHLRAYSPRI*ILESRLCVPLESAP Trigger: TGGGGCAGACTCCAAAGGAACACAGAGTCGGGATTCCAGAATTCAAATACGTGGCGAATATGCACGGAGATGAGACTGTAGGGCGAGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
||
| CDS CCA 90 bp | CCCTACAGTCTCATCTCCGTGCATATTCGCCACGTATTTGAATTCTaGAATCCCGACTCTGTGTTCCTTTGGAGTCTGCCCCACAACGAG | + |
|
Preference number: 5 (lower is better) Translates to: PYSLISVHIRHVFEF*NPDSVFLWSLPHNE Trigger: CTCGTTGTGGGGCAGACTCCAAAGGAACACAGAGTCGGGATTCCAGAATTCAAATACGTGGCGAATATGCACGGAGATGAGACTGTAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CCA 90 bp | ATTCGCCACGTATTTGAATTCTGGAATCCCGACTCTGTGTTCCTTTaGAGTCTGCCCCACAACGAGAACCCACAGGTTTCTACCTCTCAC | + |
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Preference number: 5 (lower is better) Translates to: IRHVFEFWNPDSVFL*SLPHNENPQVSTSH Trigger: GTGAGAGGTAGAAACCTGTGGGTTCTCGTTGTGGGGCAGACTCCAAAGGAACACAGAGTCGGGATTCCAGAATTCAAATACGTGGCGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS-3UTR CAA 90 bp | CCCACAGGAGGGAGGGTTGCCATAACCGGGAGTAACCAATCCCTGATTCCCGGAGGTTGCTTTGTTACATaGTTATTCTCAAAGGCATCA | + |
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Preference number: 5 (lower is better) Translates to: PTGGRVAITGSNQSLIPGGCFVT*LFSKAS Trigger: TGATGCCTTTGAGAATAACAATGTAACAAAGCAACC...TCCGGGAATCAGGGATTGGTTACTCCCGGTTATGGCAACCCTCCCTCCTGTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CCA 90 bp | GAGGTGAAAATCCTTTTTAAGAGCACTGAAGGGCTGGGATTTCCCTaGAATAGTAAGCTTCGTGAGGTAGGAGTCGTGTCCAGGGACTGT | + |
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Preference number: 5 (lower is better) Translates to: EVKILFKSTEGLGFP*NSKLREVGVVSRDC Trigger: ACAGTCCCTGGACACGACTCCTACCTCACGAAGCTTACTATTCCAGGGAAATCCCAGCCCTTCAGTGCTCTTAAAAAGGATTTTCACCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS-3UTR CAA 90 bp | CAGCCTCCCAAGCGCTGGGATAATAGTTCACCACCACACCTGGCTTCGTCTTATATATTCGCCACGTATTaGAATTCTGGAATCCCGACT | + |
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Preference number: 5 (lower is better) Translates to: QPPKRWDNSSPPHLASSYIFATY*NSGIPT Trigger: AGTCGGGATTCCAGAATTCAAATACGTGGCGAATAT...ATAAGACGAAGCCAGGTGTGGTGGTGAACTATTATCCCAGCGCTTGGGAGGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS GCA 90 bp | ACGTATTTGAATTCTGGAATCCCGACTCTGTGTTCCTTTGGAGTCTaGCCCACAACGAGAACCCACAGGTTTCTACCTCTCACAGATTTC | + |
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Preference number: 5 (lower is better) Translates to: TYLNSGIPTLCSFGV*PTTRTHRFLPLTDF Trigger: GAAATCTGTGAGAGGTAGAAACCTGTGGGTTCTCGTTGTGGGGCAGACTCCAAAGGAACACAGAGTCGGGATTCCAGAATTCAAATACGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS-3UTR CAA 90 bp | GTTACAGACCCAAGTATTCCTTCTGCTTTCTCTACCTGGCAGAGGGCAACAGAATACACTGATCTCCTTTaGTCATGTTGGGATTCCGGG | + |
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Preference number: 5 (lower is better) Translates to: VTDPSIPSAFSTWQRATEYTDLL*SCWDSG Trigger: CCCGGAATCCCAACATGACAAAAGGAGATCAGTGTA...TTCTGTTGCCCTCTGCCAGGTAGAGAAAGCAGAAGGAATACTTGGGTCTGTAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS TCA 90 bp | GGAGATTCGCAGAGAGGACAAATGTTTCCGTTTTCAGCCACTCCATaGTTGCCAGAGTCTCAGGTTGCTTTGTTACATTGTTATTCTCAA | + |
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Preference number: 5 (lower is better) Translates to: GDSQRGQMFPFSATP*LPESQVALLHCYSQ Trigger: TTGAGAATAACAATGTAACAAAGCAACCTGAGACTCTGGCAATCATGGAGTGGCTGAAAACGGAAACATTTGTCCTCTCTGCGAATCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS GCA 90 bp | ATTCGCAGAGAGGACAAATGTTTCCGTTTTCAGCCACTCCATGATTaGCAGAGTCTCAGGTTGCTTTGTTACATTGTTATTCTCAAAGGC | + |
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Preference number: 5 (lower is better) Translates to: IRREDKCFRFQPLHD*QSLRLLCYIVILKG Trigger: GCCTTTGAGAATAACAATGTAACAAAGCAACCTGAGACTCTGGCAATCATGGAGTGGCTGAAAACGGAAACATTTGTCCTCTCTGCGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS GCA 90 bp | AATGTTTCCGTTTTCAGCCACTCCATGATTGCCAGAGTCTCAGGTTaGTTTGTTACATTGTTATTCTCAAAGGCATCAGGAAAGTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: NVSVFSHSMIARVSG*FVTLLFSKASGKFL Trigger: CAGAAACTTTCCTGATGCCTTTGAGAATAACAATGTAACAAAGCAACCTGAGACTCTGGCAATCATGGAGTGGCTGAAAACGGAAACATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS-3UTR CAA 90 bp | CTTTCCCTCAAGCCTCACAGCTCACCCATTTGCATTTATCTTTGGATTTTGTTCGAGTCTCAGGTTGCTTaGTTACATTGTTATTCTCAA | + |
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Preference number: 5 (lower is better) Translates to: LSLKPHSSPICIYLWILFESQVA*LHCYSQ Trigger: TTGAGAATAACAATGTAACAAAGCAACCTGAGACTC...GAACAAAATCCAAAGATAAATGCAAATGGGTGAGCTGTGAGGCTTGAGGGAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CCA 72 bp | CACGCCCAGACTAGGCTTTGTGGCAGCCGAGTGGCTTaGCATGAATTTGTACAGCGGAATCATCGGGCACGA | + |
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Preference number: 6 (lower is better) Translates to: HAQTRLCGSRVA*HEFVQRNHRAR Trigger: TCGTGCCCGATGATTCCGCTGTACAAATTCATGCCAAGCCACTCGGCTGCCACAAAGCCTAGTCTGGGCGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 90 bp | ACGCCCAGACTAGGCTTTGTGGCAGCCGAGTGGCTTGGCATGAATTaGTACAGCGGAATCATCGGGCACGAAGGATTGGATACGGAGATG | + |
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Preference number: 6 (lower is better) Translates to: TPRLGFVAAEWLGMN*YSGIIGHEGLDTEM Trigger: CATCTCCGTATCCAATCCTTCGTGCCCGATGATTCCGCTGTACAAATTCATGCCAAGCCACTCGGCTGCCACAAAGCCTAGTCTGGGCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS TCA 72 bp | ACGGAGATGGAATCCGGCTGCCATCGCAGCGGGAGGTaGAAATCCTTTTTAAGAGCACTGAAGGGCTGGGAT | + |
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Preference number: 6 (lower is better) Translates to: TEMESGCHRSGR*KSFLRALKGWD Trigger: ATCCCAGCCCTTCAGTGCTCTTAAAAAGGATTTTCACCTCCCGCTGCGATGGCAGCCGGATTCCATCTCCGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CCA 72 bp | AAAAACACGCCCAGACTAGGCTTTGTGGCAGCCGAGTaGCTTGGCATGAATTTGTACAGCGGAATCATCGGG | + |
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Preference number: 6 (lower is better) Translates to: KNTPRLGFVAAE*LGMNLYSGIIG Trigger: CCCGATGATTCCGCTGTACAAATTCATGCCAAGCCACTCGGCTGCCACAAAGCCTAGTCTGGGCGTGTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 72 bp | CTGGGCCCAGATGTAGTTGTAATCTTGCATTCCCCCTaGCAGTGGGTACCAGGAGTAGCCGTTGATAATCCC | + |
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Preference number: 6 (lower is better) Translates to: LGPDVVVILHSP*QWVPGVAVDNP Trigger: GGGATTATCAACGGCTACTCCTGGTACCCACTGCAAGGGGGAATGCAAGATTACAACTACATCTGGGCCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 72 bp | ATGAATTTGTACAGCGGAATCATCGGGCACGAAGGATaGGATACGGAGATGGAATCCGGCTGCCATCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: MNLYSGIIGHEG*DTEMESGCHRS Trigger: GCTGCGATGGCAGCCGGATTCCATCTCCGTATCCAATCCTTCGTGCCCGATGATTCCGCTGTACAAATTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 90 bp | AGTTCTCGCCCTACAGTCTCATCTCCGTGCATATTCGCCACGTATTaGAATTCTGGAATCCCGACTCTGTGTTCCTTTGGAGTCTGCCCC | + |
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Preference number: 6 (lower is better) Translates to: SSRPTVSSPCIFATY*NSGIPTLCSFGVCP Trigger: GGGGCAGACTCCAAAGGAACACAGAGTCGGGATTCCAGAATTCAAATACGTGGCGAATATGCACGGAGATGAGACTGTAGGGCGAGAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS GCA 72 bp | AATTCTGGAATCCCGACTCTGTGTTCCTTTGGAGTCTaGCCCACAACGAGAACCCACAGGTTTCTACCTCTC | + |
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Preference number: 6 (lower is better) Translates to: NSGIPTLCSFGV*PTTRTHRFLPL Trigger: GAGAGGTAGAAACCTGTGGGTTCTCGTTGTGGGGCAGACTCCAAAGGAACACAGAGTCGGGATTCCAGAATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CCA 72 bp | CCAGATGTAGTTGTAATCTTGCATTCCCCCTTGCAGTaGGTACCAGGAGTAGCCGTTGATAATCCCGTTGGG | + |
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Preference number: 6 (lower is better) Translates to: PDVVVILHSPLQ*VPGVAVDNPVG Trigger: CCCAACGGGATTATCAACGGCTACTCCTGGTACCCACTGCAAGGGGGAATGCAAGATTACAACTACATCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CCA 72 bp | CTCATCTCCGTGCATATTCGCCACGTATTTGAATTCTaGAATCCCGACTCTGTGTTCCTTTGGAGTCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: LISVHIRHVFEF*NPDSVFLWSLP Trigger: GGGCAGACTCCAAAGGAACACAGAGTCGGGATTCCAGAATTCAAATACGTGGCGAATATGCACGGAGATGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 72 bp | AATTTCAAAGCACTGGGCCCAGATGTAGTTGTAATCTaGCATTCCCCCTTGCAGTGGGTACCAGGAGTAGCC | + |
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Preference number: 6 (lower is better) Translates to: NFKALGPDVVVI*HSPLQWVPGVA Trigger: GGCTACTCCTGGTACCCACTGCAAGGGGGAATGCAAGATTACAACTACATCTGGGCCCAGTGCTTTGAAATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 90 bp | CTCCAGGGTAATTTCAAAGCACTGGGCCCAGATGTAGTTGTAATCTaGCATTCCCCCTTGCAGTGGGTACCAGGAGTAGCCGTTGATAAT | + |
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Preference number: 6 (lower is better) Translates to: LQGNFKALGPDVVVI*HSPLQWVPGVAVDN Trigger: ATTATCAACGGCTACTCCTGGTACCCACTGCAAGGGGGAATGCAAGATTACAACTACATCTGGGCCCAGTGCTTTGAAATTACCCTGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CCA 72 bp | GTATTTGAATTCTGGAATCCCGACTCTGTGTTCCTTTaGAGTCTGCCCCACAACGAGAACCCACAGGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: VFEFWNPDSVFL*SLPHNENPQVS Trigger: AGAAACCTGTGGGTTCTCGTTGTGGGGCAGACTCCAAAGGAACACAGAGTCGGGATTCCAGAATTCAAATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CCA 72 bp | ATCCTTTTTAAGAGCACTGAAGGGCTGGGATTTCCCTaGAATAGTAAGCTTCGTGAGGTAGGAGTCGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: ILFKSTEGLGFP*NSKLREVGVVS Trigger: GGACACGACTCCTACCTCACGAAGCTTACTATTCCAGGGAAATCCCAGCCCTTCAGTGCTCTTAAAAAGGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS TCA 72 bp | CTACAGTCTCATCTCCGTGCATATTCGCCACGTATTTaGATTCTGGAATCCCGACTCTGTGTTCCTTTGGAG | + |
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Preference number: 6 (lower is better) Translates to: LQSHLRAYSPRI*ILESRLCVPLE Trigger: CTCCAAAGGAACACAGAGTCGGGATTCCAGAATTCAAATACGTGGCGAATATGCACGGAGATGAGACTGTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 72 bp | CCTACAGTCTCATCTCCGTGCATATTCGCCACGTATTaGAATTCTGGAATCCCGACTCTGTGTTCCTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: PTVSSPCIFATY*NSGIPTLCSFG Trigger: TCCAAAGGAACACAGAGTCGGGATTCCAGAATTCAAATACGTGGCGAATATGCACGGAGATGAGACTGTAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS GCA 72 bp | AGTTTCTGTTCAGGTCATAATTATTGTAGTTTTCCCTaGCATTGCTGTAGTAACAGTCGGGCTTCTGGACGG | + |
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Preference number: 6 (lower is better) Translates to: SFCSGHNYCSFP*HCCSNSRASGR Trigger: CCGTCCAGAAGCCCGACTGTTACTACAGCAATGGCAGGGAAAACTACAATAATTATGACCTGAACAGAAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CCA 72 bp | TTGTTGGTTCTAAACGGGCAGATATGCTTTCTGTCTTaGACTTCCACGATTACATTCGGTAATGGAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: LLVLNGQICFLS*TSTITFGNGAP Trigger: TGGAGCTCCATTACCGAATGTAATCGTGGAAGTCCAAGACAGAAAGCATATCTGCCCGTTTAGAACCAACAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 72 bp | CGTTTTCAGCCACTCCATGATTGCCAGAGTCTCAGGTaGCTTTGTTACATTGTTATTCTCAAAGGCATCAGG | + |
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Preference number: 6 (lower is better) Translates to: RFQPLHDCQSLR*LCYIVILKGIR Trigger: CCTGATGCCTTTGAGAATAACAATGTAACAAAGCAACCTGAGACTCTGGCAATCATGGAGTGGCTGAAAACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 72 bp | AGGTGCACCTGTTTTATATATTCGATCAAAGAGGCTTaGTTATCGTTCCAAAAGAGCGGCAGCTTCTCCTCG | + |
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Preference number: 6 (lower is better) Translates to: RCTCFIYSIKEA*LSFQKSGSFSS Trigger: CGAGGAGAAGCTGCCGCTCTTTTGGAACGATAACAAAGCCTCTTTGATCGAATATATAAAACAGGTGCACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS GCA 72 bp | TATTCTCCAAGCTTGTTGGTTCTAAACGGGCAGATATaGTTTCTGTCTTGGACTTCCACGATTACATTCGGT | + |
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Preference number: 6 (lower is better) Translates to: YSPSLLVLNGQI*FLSWTSTITFG Trigger: ACCGAATGTAATCGTGGAAGTCCAAGACAGAAAGCATATCTGCCCGTTTAGAACCAACAAGCTTGGAGAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS GCA 72 bp | GAGGACAAATGTTTCCGTTTTCAGCCACTCCATGATTaGCAGAGTCTCAGGTTGCTTTGTTACATTGTTATT | + |
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Preference number: 6 (lower is better) Translates to: EDKCFRFQPLHD*QSLRLLCYIVI Trigger: AATAACAATGTAACAAAGCAACCTGAGACTCTGGCAATCATGGAGTGGCTGAAAACGGAAACATTTGTCCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 90 bp | AAATGTTTCCGTTTTCAGCCACTCCATGATTGCCAGAGTCTCAGGTaGCTTTGTTACATTGTTATTCTCAAAGGCATCAGGAAAGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: KCFRFQPLHDCQSLR*LCYIVILKGIRKVS Trigger: AGAAACTTTCCTGATGCCTTTGAGAATAACAATGTAACAAAGCAACCTGAGACTCTGGCAATCATGGAGTGGCTGAAAACGGAAACATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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| CDS CAA 72 bp | TCCATGATTGCCAGAGTCTCAGGTTGCTTTGTTACATaGTTATTCTCAAAGGCATCAGGAAAGTTTCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: SMIARVSGCFVT*LFSKASGKFLF Trigger: GAACAGAAACTTTCCTGATGCCTTTGAGAATAACAATGTAACAAAGCAACCTGAGACTCTGGCAATCATGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020399.6 |
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