Pregenerated sensors for CPLX4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024519Ensembl transcript IDs: ENSMUST00000025397.7
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCTAACTTAAGGATAGTAGATGACTGTGCATTTCTTGTTCCTGGATaGCACTCCACCCTCTATCCTCCCTGCCATGGGGTTCTGCCCAAT | + |
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Preference number: 1 (lower is better) Translates to: PNLRIVDDCAFLVPG*HSTLYPPCHGVLPN Trigger: ATTGGGCAGAACCCCATGGCAGGGAGGATAGAGGGTGGAGTGGCATCCAGGAACAAGAAATGCACAGTCATCTACTATCCTTAAGTTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR CCA 90 bp | AGGCGAGCAGCCTTTCCTCTAGAGGTAACGAATCACGCTGATGGTTaGGACCTGCTCGATAAGGAAGAAAGCTGGAAAGGAAATGCTTTT | + |
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Preference number: 1 (lower is better) Translates to: RRAAFPLEVTNHADG*DLLDKEESWKGNAF Trigger: AAAAGCATTTCCTTTCCAGCTTTCTTCCTTATCGAGCAGGTCCCAACCATCAGCGTGATTCGTTACCTCTAGAGGAAAGGCTGCTCGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR-3UTR GCA 90 bp | TCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATGGACTGGAAAACACAAAATGACTTaGACAGTGTCTGAGAGCCGG | + |
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Preference number: 2 (lower is better) Translates to: SLPWGSAQSHTAKQPWTGKHKMT*TVSESR Trigger: CCGGCTCTCAGACACTGTGCAAGTCATTTTGTGTTT...TCCAGTCCATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR-3UTR TCA 90 bp | TCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATGGACTGGATGCAGAAACACAAAATaGCTTGCACAGTGTCTGAGA | + |
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Preference number: 2 (lower is better) Translates to: SLPWGSAQSHTAKQPWTGCRNTK*LAQCLR Trigger: TCTCAGACACTGTGCAAGTCATTTTGTGTTTCTGCA...TCCAGTCCATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR CAA 90 bp | ACCCAATATACACATCGTCCCTGCCCCAGCCCATATTCTCAGGAGTaGGTGTTAACTGAGATAGAGTCATCTGGTGCGATGTACCAGGGT | + |
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Preference number: 2 (lower is better) Translates to: TQYTHRPCPSPYSQE*VLTEIESSGAMYQG Trigger: ACCCTGGTACATCGCACCAGATGACTCTATCTCAGTTAACACCAACTCCTGAGAATATGGGCTGGGGCAGGGACGATGTGTATATTGGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR-3UTR TCA 90 bp | CAGGGTAGCTGTTCTCAATCCTTTCACAGAGGTCGCCTAAGACCACCAGAAAACCTTAAGGATAGTAGATaGCTGTGCATTTCTTGTTCC | + |
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Preference number: 2 (lower is better) Translates to: QGSCSQSFHRGRLRPPENLKDSR*LCISCS Trigger: GGAACAAGAAATGCACAGTCATCTACTATCCTTAAG...GTTTTCTGGTGGTCTTAGGCGACCTCTGTGAAAGGATTGAGAACAGCTACCCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR GCA 72 bp | GCCACTCCACCCTCTATCCTCCCTGCCATGGGGTTCTaGCCAATCCCATACAGCCAAGCAACCATGGACTGG | + |
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Preference number: 3 (lower is better) Translates to: ATPPSILPAMGF*PIPYSQATMDW Trigger: CCAGTCCATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGAGGATAGAGGGTGGAGTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR GCA 72 bp | CTTGTTCCTGGATGCCACTCCACCCTCTATCCTCCCTaGCATGGGGTTCTGCCCAATCCCATACAGCCAAGC | + |
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Preference number: 3 (lower is better) Translates to: LVPGCHSTLYPP*HGVLPNPIQPS Trigger: GCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGAGGATAGAGGGTGGAGTGGCATCCAGGAACAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR-3UTR CAA 90 bp | CTCTATCCTCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATCACCTGTCTGTAGTCTaGGTACCAGGCGAGCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: LYPPCHGVLPNPIQPSNHHLSVV*VPGEQP Trigger: AGGCTGCTCGCCTGGTACCAAGACTACAGACAGGTG...ATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGAGGATAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR TCA 72 bp | GTGGCTATAACTAAAGGGAAACATGTTCCGTGCCCGTaGTGTGTGGGCTGGTTAGTGCCGTACCTGGGACAT | + |
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Preference number: 3 (lower is better) Translates to: VAITKGKHVPCP*CVGWLVPYLGH Trigger: ATGTCCCAGGTACGGCACTAACCAGCCCACACATCACGGGCACGGAACATGTTTCCCTTTAGTTATAGCCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR GCA 72 bp | AGGATAGTAGATGACTGTGCATTTCTTGTTCCTGGATaGCACTCCACCCTCTATCCTCCCTGCCATGGGGTT | + |
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Preference number: 3 (lower is better) Translates to: RIVDDCAFLVPG*HSTLYPPCHGV Trigger: AACCCCATGGCAGGGAGGATAGAGGGTGGAGTGGCATCCAGGAACAAGAAATGCACAGTCATCTACTATCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR CCA 72 bp | GCCTTTCCTCTAGAGGTAACGAATCACGCTGATGGTTaGGACCTGCTCGATAAGGAAGAAAGCTGGAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: AFPLEVTNHADG*DLLDKEESWKG Trigger: TCCTTTCCAGCTTTCTTCCTTATCGAGCAGGTCCCAACCATCAGCGTGATTCGTTACCTCTAGAGGAAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR-3UTR CAA 90 bp | GGGGCCACAAAAGAATGTTTGAGAATTTCTGACCCAATATACACATCGTCCCTGATGACTGTGCATTTCTaGTTCCTGGATGCCACTCCA | + |
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Preference number: 3 (lower is better) Translates to: GATKECLRISDPIYTSSLMTVHF*FLDATP Trigger: TGGAGTGGCATCCAGGAACAAGAAATGCACAGTCAT...CAGGGACGATGTGTATATTGGGTCAGAAATTCTCAAACATTCTTTTGTGGCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR TCA 72 bp | TGTGTATATCAGATATTTGATTGCAGAAACACAAAATaGCTTGCACAGTGTCTGAGAGCCGGTTTTAAGGGG | + |
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Preference number: 3 (lower is better) Translates to: CVYQIFDCRNTK*LAQCLRAGFKG Trigger: CCCCTTAAAACCGGCTCTCAGACACTGTGCAAGTCATTTTGTGTTTCTGCAATCAAATATCTGATATACACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR CCA 90 bp | TCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATGGACTGGATCGTCTCCAGCCAGTTaGATTTGTGTCTCATCCATT | + |
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Preference number: 4 (lower is better) Translates to: SLPWGSAQSHTAKQPWTGSSPAS*ICVSSI Trigger: AATGGATGAGACACAAATCCAACTGGCTGGAGACGA...TCCAGTCCATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR TCA 90 bp | ATGGTTGGGACCTGCTCGATAAGGAAGAAAGCTGGAAAGGAAATGCTTTTGTTTAGCCGCCGCGGGGTCTaGGGTGCCTCCTTCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: MVGTCSIRKKAGKEMLLFSRRGV*GASFFF Trigger: AAAGAAGAAGGAGGCACCTCAGACCCCGCGGCGGCT...AAACAAAAGCATTTCCTTTCCAGCTTTCTTCCTTATCGAGCAGGTCCCAACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR TCA 90 bp | CTCTATCCTCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATACACTTCTGCTCTGCTaGCTGCTTGATTTCTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: LYPPCHGVLPNPIQPSNHTLLLC*LLDFCE Trigger: TTCACAGAAATCAAGCAGTCAGCAGAGCAGAAGTGT...ATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGAGGATAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR GCA 90 bp | CTCTATCCTCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATTTCTGCTCTGCTGACTaGTTGATTTCTGTGAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: LYPPCHGVLPNPIQPSNHFCSAD*LISVKV Trigger: CACCTTCACAGAAATCAAGCAGTCAGCAGAGCAGAA...ATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGAGGATAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR GCA 90 bp | TCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATGGACTGGAATCACAGAACACTTCTaGTCTGCTGACTGCTTGATT | + |
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Preference number: 4 (lower is better) Translates to: SLPWGSAQSHTAKQPWTGITEHF*SADCLI Trigger: AATCAAGCAGTCAGCAGAGCAGAAGTGTTCTGTGAT...TCCAGTCCATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| 3UTR CAA 72 bp | ACACATCGTCCCTGCCCCAGCCCATATTCTCAGGAGTaGGTGTTAACTGAGATAGAGTCATCTGGTGCGATG | + |
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Preference number: 4 (lower is better) Translates to: THRPCPSPYSQE*VLTEIESSGAM Trigger: CATCGCACCAGATGACTCTATCTCAGTTAACACCAACTCCTGAGAATATGGGCTGGGGCAGGGACGATGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR GCA 90 bp | TCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATGGACTGGATGTGAAGGTGGCTTGTaGCTTTTCTTTAATGGTATC | + |
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Preference number: 4 (lower is better) Translates to: SLPWGSAQSHTAKQPWTGCEGGL*LFFNGI Trigger: GATACCATTAAAGAAAAGGCACAAGCCACCTTCACA...TCCAGTCCATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR CCA 90 bp | CTCTATCCTCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATTCCTCTTCCTCATCTTaGTCTTCATCTACCATCTTT | + |
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Preference number: 4 (lower is better) Translates to: LYPPCHGVLPNPIQPSNHSSSSS*SSSTIF Trigger: AAAGATGGTAGATGAAGACCAAGATGAGGAAGAGGA...ATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGAGGATAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR CCA 90 bp | ATACAGCCAAGCAACCATGGACTGGACCTGCTGAACCATGACCCCCGCATAAATATCCATTTCACTCTTTaGAAGCCTGTACTTGTCCCT | + |
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Preference number: 4 (lower is better) Translates to: IQPSNHGLDLLNHDPRINIHFTL*KPVLVP Trigger: AGGGACAAGTACAGGCTTCCAAAGAGTGAAATGGAT...ATTTATGCGGGGGTCATGGTTCAGCAGGTCCAGTCCATGGTTGCTTGGCTGTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR CCA 90 bp | AGCCCATATTCTCAGGAGTTGGTGTTAACTGAGATAGAGTCATCTGGTGCGATGTCCAAGTCCATGTTTTaGAGGTTCTGCAGCTGCCCA | + |
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Preference number: 4 (lower is better) Translates to: SPYSQELVLTEIESSGAMSKSMF*RFCSCP Trigger: TGGGCAGCTGCAGAACCTCCAAAACATGGACTTGGA...CATCGCACCAGATGACTCTATCTCAGTTAACACCAACTCCTGAGAATATGGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR GCA 90 bp | GCTGTCCTAAAGATCTTTAACCAGATGGTCCCACATCATAACTTATGGCTGATACCGCGGGGTCTGAGGTaGCTCCTTCTTCTTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: AVLKIFNQMVPHHNLWLIPRGLR*LLLLSF Trigger: AAAAGAAAGAAGAAGGAGGCACCTCAGACCCCGCGG...TATCAGCCATAAGTTATGATGTGGGACCATCTGGTTAAAGATCTTTAGGACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR GCA 90 bp | GGGGCCACAAAAGAATGTTTGAGAATTTCTGACCCAATATACACATCGTCCCTGCTCTCTGCCTTTTTCTaGGTAAATGCGGCATCTCTC | + |
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Preference number: 4 (lower is better) Translates to: GATKECLRISDPIYTSSLLSAFF*VNAASL Trigger: GAGAGATGCCGCATTTACGCAGAAAAAGGCAGAGAG...CAGGGACGATGTGTATATTGGGTCAGAAATTCTCAAACATTCTTTTGTGGCCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR CAA 90 bp | CTCTATCCTCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATATCCAAGTCCATGTTTaGGAGGTTCTGCAGCTGCCC | + |
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Preference number: 5 (lower is better) Translates to: LYPPCHGVLPNPIQPSNHIQVHV*EVLQLP Trigger: GGGCAGCTGCAGAACCTCCAAAACATGGACTTGGAT...ATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGAGGATAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS GCA 90 bp | TTGTCCCTGAGGTGGACTCGTAGGCACGCCCTCTCTGCCTTTTTCTaGGTAAATGCGGCATCTCTCTCCATCTTCTCTTCAATCATCTGC | + |
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Preference number: 5 (lower is better) Translates to: LSLRWTRRHALSAFF*VNAASLSIFSSIIC Trigger: GCAGATGATTGAAGAGAAGATGGAGAGAGATGCCGCATTTACGCAGAAAAAGGCAGAGAGGGCGTGCCTACGAGTCCACCTCAGGGACAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS CCA 90 bp | GTCTCATCCATTTCACTCTTTGGAAGCCTGTACTTGTCCCTGAGGTaGACTCGTAGGCACGCCCTCTCTGCCTTTTTCTGCGTAAATGCG | + |
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Preference number: 5 (lower is better) Translates to: VSSISLFGSLYLSLR*TRRHALSAFFCVNA Trigger: CGCATTTACGCAGAAAAAGGCAGAGAGGGCGTGCCTACGAGTCCACCTCAGGGACAAGTACAGGCTTCCAAAGAGTGAAATGGATGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR CAA 90 bp | CTCTATCCTCCCTGCCATGGGGTTCTGCCCAATCCCATACAGCCAAGCAACCATTCCAGCCAGTTGGATTaGTGTCTCATCCATTTCACT | + |
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Preference number: 5 (lower is better) Translates to: LYPPCHGVLPNPIQPSNHSSQLD*CLIHFT Trigger: AGTGAAATGGATGAGACACAAATCCAACTGGCTGGA...ATGGTTGCTTGGCTGTATGGGATTGGGCAGAACCCCATGGCAGGGAGGATAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR CAA 90 bp | ATACAGCCAAGCAACCATGGACTGGACCTGCTGAACCATGACCCCCGCATAAATATCGTCTCCAGCCAGTaGGATTTGTGTCTCATCCAT | + |
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Preference number: 5 (lower is better) Translates to: IQPSNHGLDLLNHDPRINIVSSQ*DLCLIH Trigger: ATGGATGAGACACAAATCCAACTGGCTGGAGACGAT...ATTTATGCGGGGGTCATGGTTCAGCAGGTCCAGTCCATGGTTGCTTGGCTGTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS CCA 90 bp | AAGGTGGCTTGTGCCTTTTCTTTAATGGTATCCAAGTCCATGTTTTaGAGGTTCTGCAGCTGCCCAAGGATAGAATCCTTCTCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: KVACAFSLMVSKSMF*RFCSCPRIESFSSS Trigger: GGAAGAGGAGAAGGATTCTATCCTTGGGCAGCTGCAGAACCTCCAAAACATGGACTTGGATACCATTAAAGAAAAGGCACAAGCCACCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS CCA 90 bp | ATCTTTCGGAGATCTTCTGGTAAGTCCACATCGTCTCCAGCCAGTTaGATTTGTGTCTCATCCATTTCACTCTTTGGAAGCCTGTACTTG | + |
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Preference number: 5 (lower is better) Translates to: IFRRSSGKSTSSPAS*ICVSSISLFGSLYL Trigger: CAAGTACAGGCTTCCAAAGAGTGAAATGGATGAGACACAAATCCAACTGGCTGGAGACGATGTGGACTTACCAGAAGATCTCCGAAAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR CAA 90 bp | GCTGTCCTAAAGATCTTTAACCAGATGGTCCCACATCATAACTTATGGCTGATACATCCATTTCACTCTTaGGAAGCCTGTACTTGTCCC | + |
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Preference number: 5 (lower is better) Translates to: AVLKIFNQMVPHHNLWLIHPFHS*EACTCP Trigger: GGGACAAGTACAGGCTTCCAAAGAGTGAAATGGATG...TATCAGCCATAAGTTATGATGTGGGACCATCTGGTTAAAGATCTTTAGGACAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS-3UTR CAA 90 bp | GGGGCCACAAAAGAATGTTTGAGAATTTCTGACCCAATATACACATCGTCCCTGTTCTGTGAAGGTGGCTaGTGCCTTTTCTTTAATGGT | + |
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Preference number: 5 (lower is better) Translates to: GATKECLRISDPIYTSSLFCEGG*CLFFNG Trigger: ACCATTAAAGAAAAGGCACAAGCCACCTTCACAGAA...CAGGGACGATGTGTATATTGGGTCAGAAATTCTCAAACATTCTTTTGTGGCCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS TCA 72 bp | CATCCATTTCACTCTTTGGAAGCCTGTACTTGTCCCTaGGGTGGACTCGTAGGCACGCCCTCTCTGCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: HPFHSLEACTCP*GGLVGTPSLPF Trigger: AAAAGGCAGAGAGGGCGTGCCTACGAGTCCACCTCAGGGACAAGTACAGGCTTCCAAAGAGTGAAATGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS CAA 90 bp | GAAGGTGGCTTGTGCCTTTTCTTTAATGGTATCCAAGTCCATGTTTaGGAGGTTCTGCAGCTGCCCAAGGATAGAATCCTTCTCCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: EGGLCLFFNGIQVHV*EVLQLPKDRILLLF Trigger: GAAGAGGAGAAGGATTCTATCCTTGGGCAGCTGCAGAACCTCCAAAACATGGACTTGGATACCATTAAAGAAAAGGCACAAGCCACCTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS GCA 72 bp | TCTTTAATGGTATCCAAGTCCATGTTTTGGAGGTTCTaGAGCTGCCCAAGGATAGAATCCTTCTCCTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SLMVSKSMFWRF*SCPRIESFSSS Trigger: GGAAGAGGAGAAGGATTCTATCCTTGGGCAGCTGCAGAACCTCCAAAACATGGACTTGGATACCATTAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS CCA 72 bp | AGATCTTCTGGTAAGTCCACATCGTCTCCAGCCAGTTaGATTTGTGTCTCATCCATTTCACTCTTTGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: RSSGKSTSSPAS*ICVSSISLFGS Trigger: GCTTCCAAAGAGTGAAATGGATGAGACACAAATCCAACTGGCTGGAGACGATGTGGACTTACCAGAAGATCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS CCA 72 bp | TGTGCCTTTTCTTTAATGGTATCCAAGTCCATGTTTTaGAGGTTCTGCAGCTGCCCAAGGATAGAATCCTTC | + |
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Preference number: 6 (lower is better) Translates to: CAFSLMVSKSMF*RFCSCPRIESF Trigger: GAAGGATTCTATCCTTGGGCAGCTGCAGAACCTCCAAAACATGGACTTGGATACCATTAAAGAAAAGGCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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| CDS CAA 72 bp | TTGTGCCTTTTCTTTAATGGTATCCAAGTCCATGTTTaGGAGGTTCTGCAGCTGCCCAAGGATAGAATCCTT | + |
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Preference number: 6 (lower is better) Translates to: LCLFFNGIQVHV*EVLQLPKDRIL Trigger: AAGGATTCTATCCTTGGGCAGCTGCAGAACCTCCAAAACATGGACTTGGATACCATTAAAGAAAAGGCACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025397.7 |
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