RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPLX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033615

Ensembl transcript IDs: ENSMUST00000046892.10, ENSMUST00000129040.2

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAAGACAGAGCGAATGGTCCAGCAGGTCCAACAAGTCCAGAAACTaGGGCAATGGACTCAGGGAAGGGCTGGGGGCCCCAAGCACCCAC +
Preference number: 1 (lower is better)
Translates to: GRQSEWSSRSNKSRN*GNGLREGLGAPSTH
Trigger: GTGGGTGCTTGGGGCCCCCAGCCCTTCCCTGAGTCCATTGCCCCAGTTTCTGGACTTGTTGGACCTGCTGGACCATTCGCTCTGTCTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 90 bp ACATGCAGGAGGTGCAGGCACGAGGACAGACAGACAGGTAACACATaGGCTATTCTAAGCTCAGCGCCCGGTGCCCCATGCGCTAGGAAC +
Preference number: 1 (lower is better)
Translates to: TCRRCRHEDRQTGNT*AILSSAPGAPCARN
Trigger: GTTCCTAGCGCATGGGGCACCGGGCGCTGAGCTTAGAATAGCCCATGTGTTACCTGTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR TCA 90 bp AGCTCAGCGCCCGGTGCCCCATGCGCTAGGAACAGGATGCAGGATTaGCTCAAGAGAGGGCCATCTGCTCAGAGCTGGCTTCTCAATTCA +
Preference number: 1 (lower is better)
Translates to: SSAPGAPCARNRMQD*LKRGPSAQSWLLNS
Trigger: TGAATTGAGAAGCCAGCTCTGAGCAGATGGCCCTCTCTTGAGTCAATCCTGCATCCTGTTCCTAGCGCATGGGGCACCGGGCGCTGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR GCA 90 bp TGGGCCACACACAGAACAAAACACCACAGCCCAAGCCCAGGAGCTTaGATTTACCGGCCACTGTCAGCCCTTCAGAGGAGGAATAGTGGA +
Preference number: 1 (lower is better)
Translates to: WATHRTKHHSPSPGA*IYRPLSALQRRNSG
Trigger: TCCACTATTCCTCCTCTGAAGGGCTGACAGTGGCCGGTAAATGCAAGCTCCTGGGCTTGGGCTGTGGTGTTTTGTTCTGTGTGTGGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR TCA 90 bp TCTCAATTCATGAAAACCAGCCAGAGGCGCAGAGAATGGCCCAGGTaGGCAAGGTACTGTGGGCCGAGCATGCTTCATCTCTTTGGGCAG +
Preference number: 1 (lower is better)
Translates to: SQFMKTSQRRREWPR*ARYCGPSMLHLFGQ
Trigger: CTGCCCAAAGAGATGAAGCATGCTCGGCCCACAGTACCTTGCTCACCTGGGCCATTCTCTGCGCCTCTGGCTGGTTTTCATGAATTGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 90 bp CAGGAGGCCACCAGGGAGAGGTGGGATCAGGGAAAGATGGGACTCTaGAAAGTGCATTACAGACGATGTCAAGGGACTCCAAGTGTGTCT +
Preference number: 1 (lower is better)
Translates to: QEATRERWDQGKMGL*KVHYRRCQGTPSVS
Trigger: AGACACACTTGGAGTCCCTTGACATCGTCTGTAATGCACTTTCCAGAGTCCCATCTTTCCCTGATCCCACCTCTCCCTGGTGGCCTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR TCA 90 bp TGCAGTCTAATTGTTATGGCTTCTCTAAAGAGCTATGTAAGGTCATaGAGGTCAATGCTAAGCCACACACCTGGCCCAAAACTCATGGAC +
Preference number: 1 (lower is better)
Translates to: CSLIVMASLKSYVRS*RSMLSHTPGPKLMD
Trigger: GTCCATGAGTTTTGGGCCAGGTGTGTGGCTTAGCATTGACCTTCATGACCTTACATAGCTCTTTAGAGAAGCCATAACAATTAGACTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 90 bp AAAGAGCTATGTAAGGTCATGAAGGTCAATGCTAAGCCACACACCTaGCCCAAAACTCATGGACACTTAATTCAGTTTTACTGTGGACAG +
Preference number: 1 (lower is better)
Translates to: KELCKVMKVNAKPHT*PKTHGHLIQFYCGQ
Trigger: CTGTCCACAGTAAAACTGAATTAAGTGTCCATGAGTTTTGGGCCAGGTGTGTGGCTTAGCATTGACCTTCATGACCTTACATAGCTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 90 bp ACTCATGGACACTTAATTCAGTTTTACTGTGGACAGGAAGGGTTATaGGAAGACCAGGCTGGCCTTTCTGTCAAGATAAAACTTACCAAA +
Preference number: 1 (lower is better)
Translates to: THGHLIQFYCGQEGL*EDQAGLSVKIKLTK
Trigger: TTTGGTAAGTTTTATCTTGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCTTCCTGTCCACAGTAAAACTGAATTAAGTGTCCATGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 90 bp AATTCAGTTTTACTGTGGACAGGAAGGGTTATGGGAAGACCAGGCTaGCCTTTCTGTCAAGATAAAACTTACCAAATACAGACCTCATTT +
Preference number: 1 (lower is better)
Translates to: NSVLLWTGRVMGRPG*PFCQDKTYQIQTSF
Trigger: AAATGAGGTCTGTATTTGGTAAGTTTTATCTTGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCTTCCTGTCCACAGTAAAACTGAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR TCA 90 bp AGAAAATGTGAGGCCTCTGACATGCAGGAGGTGCAGGCACGAGGACAGACAGACCTGGCCCTCGGGGCCTaGCCTTGGGCAGGCTCTGTG +
Preference number: 2 (lower is better)
Translates to: RKCEASDMQEVQARGQTDLALGA*PWAGSV
Trigger: CACAGAGCCTGCCCAAGGTCAGGCCCCGAGGGCCAG...GTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGTCAGAGGCCTCACATTTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR TCA 90 bp ACATGCAGGAGGTGCAGGCACGAGGACAGACAGACAGGTAACACATGGGCTATTCACAGCACAGGGGCCTaGGGGTCACACCCTTGCCTG +
Preference number: 2 (lower is better)
Translates to: TCRRCRHEDRQTGNTWAIHSTGA*GSHPCL
Trigger: CAGGCAAGGGTGTGACCCTCAGGCCCCTGTGCTGTG...AATAGCCCATGTGTTACCTGTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp ACATGCAGGAGGTGCAGGCACGAGGACAGACAGACAGGTAACACATGGGCTATTGACTCAGGGAAGGGCTaGGGGCCCCAAGCACCCACT +
Preference number: 2 (lower is better)
Translates to: TCRRCRHEDRQTGNTWAIDSGKG*GPQAPT
Trigger: AGTGGGTGCTTGGGGCCCCCAGCCCTTCCCTGAGTC...AATAGCCCATGTGTTACCTGTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp TGGACAGGAAGGGTTATGGGAAGACCAGGCTGGCCTTTCTGTCAAGATAAAACTAGGGGTGGTCAGGGCTaGCCCTCGGGGCCTGACCTT +
Preference number: 2 (lower is better)
Translates to: WTGRVMGRPGWPFCQDKTRGGQG*PSGPDL
Trigger: AAGGTCAGGCCCCGAGGGCCAGCCCTGACCACCCCT...AGTTTTATCTTGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCTTCCTGTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR TCA 90 bp GGCCACTGTCAGCCCTTCAGAGGAGGAATAGTGGAGAGGGTGGGACACTTGATTGACTCCAAGTGTGTCTaGGACCACCCGCTCCAAATC +
Preference number: 2 (lower is better)
Translates to: GHCQPFRGGIVERVGHLIDSKCV*DHPLQI
Trigger: GATTTGGAGCGGGTGGTCTCAGACACACTTGGAGTC...AATCAAGTGTCCCACCCTCTCCACTATTCCTCCTCTGAAGGGCTGACAGTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR TCA 90 bp TTGGCTGTGATTCCCTCAGAGAGAAAATGTGAGGCCTCTGACATGCAGGAGGTGAGAGAATGGCCCAGGTaGGCAAGGTACTGTGGGCCG +
Preference number: 2 (lower is better)
Translates to: LAVIPSERKCEASDMQEVREWPR*ARYCGP
Trigger: CGGCCCACAGTACCTTGCTCACCTGGGCCATTCTCT...CACCTCCTGCATGTCAGAGGCCTCACATTTTCTCTCTGAGGGAATCACAGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR GCA 90 bp AGCAAGGTACTGTGGGCCGAGCATGCTTCATCTCTTTGGGCAGAGGGCATTCTGCCAAGCCCAGGAGCTTaGATTTACCGGCCACTGTCA +
Preference number: 2 (lower is better)
Translates to: SKVLWAEHASSLWAEGILPSPGA*IYRPLS
Trigger: TGACAGTGGCCGGTAAATGCAAGCTCCTGGGCTTGG...CAGAATGCCCTCTGCCCAAAGAGATGAAGCATGCTCGGCCCACAGTACCTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR GCA 90 bp AGAAAATGTGAGGCCTCTGACATGCAGGAGGTGCAGGCACGAGGACAGACAGACGTAGTTGGGTCATACTaGCCCTGGGCCACACACAGA +
Preference number: 2 (lower is better)
Translates to: RKCEASDMQEVQARGQTDVVGSY*PWATHR
Trigger: TCTGTGTGTGGCCCAGGGGCAGTATGACCCAACTAC...GTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGTCAGAGGCCTCACATTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp TCTGAGACCACCCGCTCCAAATCTATTGCTGTGTTTCCTCTGGCCATGGAATTCTCAGTGATGGCAGTATaGGGAGGGGTGGCCAGAGGC +
Preference number: 2 (lower is better)
Translates to: SETTRSKSIAVFPLAMEFSVMAV*GGVARG
Trigger: GCCTCTGGCCACCCCTCCCCATACTGCCATCACTGA...GAATTCCATGGCCAGAGGAAACACAGCAATAGATTTGGAGCGGGTGGTCTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp ACATGCAGGAGGTGCAGGCACGAGGACAGACAGACAGGTAACACATGGGCTATTGGACAGGAAGGGTTATaGGAAGACCAGGCTGGCCTT +
Preference number: 2 (lower is better)
Translates to: TCRRCRHEDRQTGNTWAIGQEGL*EDQAGL
Trigger: AAGGCCAGCCTGGTCTTCCCATAACCCTTCCTGTCC...AATAGCCCATGTGTTACCTGTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp AGGGTTATGGGAAGACCAGGCTGGCCTTTCTGTCAAGATAAAACTTACCAAATACAGTATGGGGAGGGGTaGCCAGAGGCTCCCGAGGCG +
Preference number: 2 (lower is better)
Translates to: RVMGRPGWPFCQDKTYQIQYGEG*PEAPEA
Trigger: CGCCTCGGGAGCCTCTGGCCACCCCTCCCCATACTG...TATTTGGTAAGTTTTATCTTGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR TCA 90 bp AGGGTTATGGGAAGACCAGGCTGGCCTTTCTGTCAAGATAAAACTTACCAAATAGCCTGGTGGGGTCAGTaGTGGCAGTATGGGGAGGGG +
Preference number: 2 (lower is better)
Translates to: RVMGRPGWPFCQDKTYQIAWWGQ*WQYGEG
Trigger: CCCCTCCCCATACTGCCATCACTGACCCCACCAGGC...TATTTGGTAAGTTTTATCTTGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR GCA 90 bp AGCAAGGTACTGTGGGCCGAGCATGCTTCATCTCTTTGGGCAGAGGGCATTCTGCAGCTGGACAAAATATaGAAAGGCTGCTGGGGAAGA +
Preference number: 2 (lower is better)
Translates to: SKVLWAEHASSLWAEGILQLDKI*KGCWGR
Trigger: TCTTCCCCAGCAGCCTTTGCATATTTTGTCCAGCTG...CAGAATGCCCTCTGCCCAAAGAGATGAAGCATGCTCGGCCCACAGTACCTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR TCA 90 bp AGAAAATGTGAGGCCTCTGACATGCAGGAGGTGCAGGCACGAGGACAGACAGACAGCTATGTAAGGTCATaGAGGTCAATGCTAAGCCAC +
Preference number: 2 (lower is better)
Translates to: RKCEASDMQEVQARGQTDSYVRS*RSMLSH
Trigger: GTGGCTTAGCATTGACCTTCATGACCTTACATAGCT...GTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGTCAGAGGCCTCACATTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR GCA 90 bp AGAGGAGGAATAGTGGAGAGGGTGGGACACTTGATTATGCGGCCCTCTGTCTGCTGGGACTCTGGAAAGTaGATTACAGACGATGTCAAG +
Preference number: 2 (lower is better)
Translates to: RGGIVERVGHLIMRPSVCWDSGK*ITDDVK
Trigger: CTTGACATCGTCTGTAATGCACTTTCCAGAGTCCCA...GCAGACAGAGGGCCGCATAATCAAGTGTCCCACCCTCTCCACTATTCCTCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp TGCTCAGAGCTGGCTTCTCAATTCATGAAAACCAGCCAGAGGCGCAGAGAATGGGGGATCAGGGAAAGATaGGACTCTGGAAAGTGCATT +
Preference number: 2 (lower is better)
Translates to: CSELASQFMKTSQRRREWGIRER*DSGKCI
Trigger: AATGCACTTTCCAGAGTCCCATCTTTCCCTGATCCC...CCATTCTCTGCGCCTCTGGCTGGTTTTCATGAATTGAGAAGCCAGCTCTGAGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp ACATGCAGGAGGTGCAGGCACGAGGACAGACAGACAGGTAACACATGGGCTATTAAATATGAAGAACAATaGCTGCTGGCTGGGCAAAGG +
Preference number: 2 (lower is better)
Translates to: TCRRCRHEDRQTGNTWAIKYEEQ*LLAGQR
Trigger: CCTTTGCCCAGCCAGCAGCCATTGTTCTTCATATTT...AATAGCCCATGTGTTACCTGTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp AGAAAATGTGAGGCCTCTGACATGCAGGAGGTGCAGGCACGAGGACAGACAGACATAGATCTAGGACTATaGCTTATTTTTGCGGGGGTA +
Preference number: 2 (lower is better)
Translates to: RKCEASDMQEVQARGQTDIDLGL*LIFAGV
Trigger: TACCCCCGCAAAAATAAGCCATAGTCCTAGATCTAT...GTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGTCAGAGGCCTCACATTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp AGAGGAGGAATAGTGGAGAGGGTGGGACACTTGATTATGCGGCCCTCTGTCTGCAGAGAAAGAGACAGCTaGACAAAATATGCAAAGGCT +
Preference number: 2 (lower is better)
Translates to: RGGIVERVGHLIMRPSVCRERDS*TKYAKA
Trigger: AGCCTTTGCATATTTTGTCCAGCTGTCTCTTTCTCT...GCAGACAGAGGGCCGCATAATCAAGTGTCCCACCCTCTCCACTATTCCTCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CCA 90 bp AGAAAATGTGAGGCCTCTGACATGCAGGAGGTGCAGGCACGAGGACAGACAGACAATTCAGTTTTACTGTaGACAGGAAGGGTTATGGGA +
Preference number: 2 (lower is better)
Translates to: RKCEASDMQEVQARGQTDNSVLL*TGRVMG
Trigger: TCCCATAACCCTTCCTGTCCACAGTAAAACTGAATT...GTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGTCAGAGGCCTCACATTTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR GCA 90 bp CCTCTGGCCATGGAATTCTTAAGCCAAACCTTGCAGAGCAACAGAGAAAGAGACAAAATATGCAAAGGCTaGTGGGGAAGACTAGGGTGG +
Preference number: 2 (lower is better)
Translates to: PLAMEFLSQTLQSNRERDKICKG*WGRLGW
Trigger: CCACCCTAGTCTTCCCCAGCAGCCTTTGCATATTTT...GTCTCTTTCTCTGTTGCTCTGCAAGGTTTGGCTTAAGAATTCCATGGCCAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR GCA 90 bp AGGGTTATGGGAAGACCAGGCTGGCCTTTCTGTCAAGATAAAACTTACCAAATAATGAAGAACAATGGCTaGTGGCTGGGCAAAGGGGGA +
Preference number: 2 (lower is better)
Translates to: RVMGRPGWPFCQDKTYQIMKNNG*WLGKGG
Trigger: TCCCCCTTTGCCCAGCCAGCAGCCATTGTTCTTCAT...TATTTGGTAAGTTTTATCTTGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CAA 90 bp TCTATTGCTGTGTTTCCTCTGGCCATGGAATTCTTAAGCCAAACCTaGCAGAGCAACAGAGAAAGAGACAGCTGGACAAAATATGCAAAG +
Preference number: 2 (lower is better)
Translates to: SIAVFPLAMEFLSQT*QSNRERDSWTKYAK
Trigger: CTTTGCATATTTTGTCCAGCTGTCTCTTTCTCTGTTGCTCTGCAAGGTTTGGCTTAAGAATTCCATGGCCAGAGGAAACACAGCAATAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 72 bp TCACACCCTTGCCTGGTGGGGTCAGTGATGGCAGTATaGGGAGGGGTGGCCAGAGGCTCCCGAGGCGCGAGG +
Preference number: 3 (lower is better)
Translates to: SHPCLVGSVMAV*GGVARGSRGAR
Trigger: CCTCGCGCCTCGGGAGCCTCTGGCCACCCCTCCCCATACTGCCATCACTGACCCCACCAGGCAAGGGTGTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR TCA 72 bp CCACCCCACTATGGCTGTGCTCCTGAGTTTAGGCCCTaGCTGGTAGCCACCCATCCAGGGGTGGTCAGGGCT +
Preference number: 3 (lower is better)
Translates to: PPHYGCAPEFRP*LVATHPGVVRA
Trigger: AGCCCTGACCACCCCTGGATGGGTGGCTACCAGTCAGGGCCTAAACTCAGGAGCACAGCCATAGTGGGGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CAA 90 bp GGCGCAGAGAATGGCCCAGGTGAGCAAGGTACTGTGGGCCGAGCATGCTTCATCCTGAGGGTCACACCCTaGCCTGGTGGGGTCAGTGAT +
Preference number: 3 (lower is better)
Translates to: GAENGPGEQGTVGRACFILRVTP*PGGVSD
Trigger: ATCACTGACCCCACCAGGCAAGGGTGTGACCCTCAG...GATGAAGCATGCTCGGCCCACAGTACCTTGCTCACCTGGGCCATTCTCTGCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR GCA 72 bp TTAGTAAGGAGGGGTCCAACCACCCGAAGGCAAGGATaGACAGCACAGGGGCCTGAGGGTCACACCCTTGCC +
Preference number: 3 (lower is better)
Translates to: LVRRGPTTRRQG*TAQGPEGHTLA
Trigger: GGCAAGGGTGTGACCCTCAGGCCCCTGTGCTGTGCATCCTTGCCTTCGGGTGGTTGGACCCCTCCTTACTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 72 bp AGCGAATGGTCCAGCAGGTCCAACAAGTCCAGAAACTaGGGCAATGGACTCAGGGAAGGGCTGGGGGCCCCA +
Preference number: 3 (lower is better)
Translates to: SEWSSRSNKSRN*GNGLREGLGAP
Trigger: TGGGGCCCCCAGCCCTTCCCTGAGTCCATTGCCCCAGTTTCTGGACTTGTTGGACCTGCTGGACCATTCGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CAA 90 bp ACATGCAGGAGGTGCAGGCACGAGGACAGACAGACAGGTAACACATGGGCTATTCCTCGGGGCCTGACCTaGGGCAGGCTCTGTGGGGAT +
Preference number: 3 (lower is better)
Translates to: TCRRCRHEDRQTGNTWAIPRGLT*GRLCGD
Trigger: ATCCCCACAGAGCCTGCCCAAGGTCAGGCCCCGAGG...AATAGCCCATGTGTTACCTGTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 72 bp AGGTGCAGGCACGAGGACAGACAGACAGGTAACACATaGGCTATTCTAAGCTCAGCGCCCGGTGCCCCATGC +
Preference number: 3 (lower is better)
Translates to: RCRHEDRQTGNT*AILSSAPGAPC
Trigger: GCATGGGGCACCGGGCGCTGAGCTTAGAATAGCCCATGTGTTACCTGTCTGTCTGTCCTCGTGCCTGCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR-3UTR CAA 90 bp TGCTGGCTGGGCAAAGGGGGAGTAGTTGGGTCATACTGCCCCTGGGCCACACACCCCGCTCCAAATCTATaGCTGTGTTTCCTCTGGCCA +
Preference number: 3 (lower is better)
Translates to: CWLGKGGVVGSYCPWATHPAPNL*LCFLWP
Trigger: TGGCCAGAGGAAACACAGCAATAGATTTGGAGCGGG...GTGTGTGGCCCAGGGGCAGTATGACCCAACTACTCCCCCTTTGCCCAGCCAGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR GCA 72 bp CACAGAACAAAACACCACAGCCCAAGCCCAGGAGCTTaGATTTACCGGCCACTGTCAGCCCTTCAGAGGAGG +
Preference number: 3 (lower is better)
Translates to: HRTKHHSPSPGA*IYRPLSALQRR
Trigger: CCTCCTCTGAAGGGCTGACAGTGGCCGGTAAATGCAAGCTCCTGGGCTTGGGCTGTGGTGTTTTGTTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR GCA 72 bp CAGAGAGAAAATGTGAGGCCTCTGACATGCAGGAGGTaGAGGCACGAGGACAGACAGACAGGTAACACATGG +
Preference number: 3 (lower is better)
Translates to: QRENVRPLTCRR*RHEDRQTGNTW
Trigger: CCATGTGTTACCTGTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGTCAGAGGCCTCACATTTTCTCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 72 bp ACCAGGGAGAGGTGGGATCAGGGAAAGATGGGACTCTaGAAAGTGCATTACAGACGATGTCAAGGGACTCCA +
Preference number: 3 (lower is better)
Translates to: TRERWDQGKMGL*KVHYRRCQGTP
Trigger: TGGAGTCCCTTGACATCGTCTGTAATGCACTTTCCAGAGTCCCATCTTTCCCTGATCCCACCTCTCCCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR TCA 72 bp GCATTACAGACGATGTCAAGGGACTCCAAGTGTGTCTaGGACCACCCGCTCCAAATCTATTGCTGTGTTTCC +
Preference number: 3 (lower is better)
Translates to: ALQTMSRDSKCV*DHPLQIYCCVS
Trigger: GGAAACACAGCAATAGATTTGGAGCGGGTGGTCTCAGACACACTTGGAGTCCCTTGACATCGTCTGTAATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR GCA 72 bp AGAGGTGGGATCAGGGAAAGATGGGACTCTGGAAAGTaGATTACAGACGATGTCAAGGGACTCCAAGTGTGT +
Preference number: 3 (lower is better)
Translates to: RGGIRERWDSGK*ITDDVKGLQVC
Trigger: ACACACTTGGAGTCCCTTGACATCGTCTGTAATGCACTTTCCAGAGTCCCATCTTTCCCTGATCCCACCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR GCA 72 bp GAACAGGATGCAGGATTGACTCAAGAGAGGGCCATCTaGTCAGAGCTGGCTTCTCAATTCATGAAAACCAGC +
Preference number: 3 (lower is better)
Translates to: EQDAGLTQERAI*SELASQFMKTS
Trigger: GCTGGTTTTCATGAATTGAGAAGCCAGCTCTGAGCAGATGGCCCTCTCTTGAGTCAATCCTGCATCCTGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 72 bp TTACTGTGGACAGGAAGGGTTATGGGAAGACCAGGCTaGCCTTTCTGTCAAGATAAAACTTACCAAATACAG +
Preference number: 3 (lower is better)
Translates to: LLWTGRVMGRPG*PFCQDKTYQIQ
Trigger: CTGTATTTGGTAAGTTTTATCTTGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCTTCCTGTCCACAGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR TCA 72 bp ATTGTTATGGCTTCTCTAAAGAGCTATGTAAGGTCATaGAGGTCAATGCTAAGCCACACACCTGGCCCAAAA +
Preference number: 3 (lower is better)
Translates to: IVMASLKSYVRS*RSMLSHTPGPK
Trigger: TTTTGGGCCAGGTGTGTGGCTTAGCATTGACCTTCATGACCTTACATAGCTCTTTAGAGAAGCCATAACAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
3UTR CCA 72 bp TGTAAGGTCATGAAGGTCAATGCTAAGCCACACACCTaGCCCAAAACTCATGGACACTTAATTCAGTTTTAC +
Preference number: 3 (lower is better)
Translates to: CKVMKVNAKPHT*PKTHGHLIQFY
Trigger: GTAAAACTGAATTAAGTGTCCATGAGTTTTGGGCCAGGTGTGTGGCTTAGCATTGACCTTCATGACCTTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR GCA 90 bp AGCAAGGTACTGTGGGCCGAGCATGCTTCATCTCTTTGGGCAGAGGGCATTCTGCGCTCCTCCTCTGCCTaGCGCAGTGCCTCCTGCCGC +
Preference number: 4 (lower is better)
Translates to: SKVLWAEHASSLWAEGILRSSSA*RSASCR
Trigger: GCGGCAGGAGGCACTGCGGCAGGCAGAGGAGGAGCG...CAGAATGCCCTCTGCCCAAAGAGATGAAGCATGCTCGGCCCACAGTACCTTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR GCA 90 bp GGCGCAGAGAATGGCCCAGGTGAGCAAGGTACTGTGGGCCGAGCATGCTTCATCGTTGGCCTCCATGGCTaGCTGAGCCTCAGCCTCACG +
Preference number: 4 (lower is better)
Translates to: GAENGPGEQGTVGRACFIVGLHG*LSLSLT
Trigger: CGTGAGGCTGAGGCTCAGGCAGCCATGGAGGCCAAC...GATGAAGCATGCTCGGCCCACAGTACCTTGCTCACCTGGGCCATTCTCTGCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR CCA 90 bp TGCTGGCTGGGCAAAGGGGGAGTAGTTGGGTCATACTGCCCCTGGGCCACACACATCGCCACAGCCCGGTaGGATAGCCTTCTTGGGTCG +
Preference number: 4 (lower is better)
Translates to: CWLGKGGVVGSYCPWATHIATAR*DSLLGS
Trigger: CGACCCAAGAAGGCTATCCCACCGGGCTGTGGCGAT...GTGTGTGGCCCAGGGGCAGTATGACCCAACTACTCCCCCTTTGCCCAGCCAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR GCA 90 bp AGCAAGGTACTGTGGGCCGAGCATGCTTCATCTCTTTGGGCAGAGGGCATTCTGTTTGCGCTCCTCCTCTaGCTGCCGCAGTGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: SKVLWAEHASSLWAEGILFALLL*LPQCLL
Trigger: CAGGAGGCACTGCGGCAGGCAGAGGAGGAGCGCAAA...CAGAATGCCCTCTGCCCAAAGAGATGAAGCATGCTCGGCCCACAGTACCTTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR CCA 90 bp AGAAAATGTGAGGCCTCTGACATGCAGGAGGTGCAGGCACGAGGACAGACAGACTCCCCATGTCCTTGGTaGCCCCTCCCAGGGCTTGTT +
Preference number: 4 (lower is better)
Translates to: RKCEASDMQEVQARGQTDSPCPW*PLPGLV
Trigger: AACAAGCCCTGGGAGGGGCCACCAAGGACATGGGGA...GTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGTCAGAGGCCTCACATTTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR GCA 90 bp AGAGGAGGAATAGTGGAGAGGGTGGGACACTTGATTATGCGGCCCTCTGTCTGCTTCTTGAACATGTCCTaGAGTGGCCCAGGCAGGTAC +
Preference number: 4 (lower is better)
Translates to: RGGIVERVGHLIMRPSVCFLNMS*SGPGRY
Trigger: GTACCTGCCTGGGCCACTGCAGGACATGTTCAAGAA...GCAGACAGAGGGCCGCATAATCAAGTGTCCCACCCTCTCCACTATTCCTCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR GCA 90 bp AGGGTTATGGGAAGACCAGGCTGGCCTTTCTGTCAAGATAAAACTTACCAAATACTCTGCCTGCCGCAGTaGCTCCTGCCGCTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: RVMGRPGWPFCQDKTYQILCLPQ*LLPLFL
Trigger: GAGGAAGAGCGGCAGGAGGCACTGCGGCAGGCAGAG...TATTTGGTAAGTTTTATCTTGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR CCA 90 bp TCCTCTGGCCATGGAATTCTTAAGCCAAACCTTGCAGAGCAACAGAGAAAGAGACTCATCTTCCTCCTCTaGCTCATCGCCACAGCCCGG +
Preference number: 4 (lower is better)
Translates to: SSGHGILKPNLAEQQRKRLIFLL*LIATAR
Trigger: CCGGGCTGTGGCGATGAGCCAGAGGAGGAAGATGAG...TCTCTTTCTCTGTTGCTCTGCAAGGTTTGGCTTAAGAATTCCATGGCCAGAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR TCA 90 bp ACATGCAGGAGGTGCAGGCACGAGGACAGACAGACAGGTAACACATGGGCTATTGCTCCTCCTTCTTCTTaGTGCCATACTTGTCTCTTA +
Preference number: 4 (lower is better)
Translates to: TCRRCRHEDRQTGNTWAIAPPSS*CHTCLL
Trigger: TAAGAGACAAGTATGGCATCAAGAAGAAGGAGGAGC...AATAGCCCATGTGTTACCTGTCTGTCTGTCCTCGTGCCTGCACCTCCTGCATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS-3UTR CCA 90 bp TGGACAGGAAGGGTTATGGGAAGACCAGGCTGGCCTTTCTGTCAAGATAAAACTGTTCTGCCTCCATCTTaGCGTACTTTGCTTTGCGCT +
Preference number: 4 (lower is better)
Translates to: WTGRVMGRPGWPFCQDKTVLPPS*RTLLCA
Trigger: AGCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAAC...AGTTTTATCTTGACAGAAAGGCCAGCCTGGTCTTCCCATAACCCTTCCTGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS GCA 90 bp ACCCTGCCGCATGACCTCACGTTCTGCCTCCATCTTGGCGTACTTTaGTTTGCGCTCCTCCTCTGCCTGCCGCAGTGCCTCCTGCCGCTC +
Preference number: 5 (lower is better)
Translates to: TLPHDLTFCLHLGVL*FALLLCLPQCLLPL
Trigger: GAGCGGCAGGAGGCACTGCGGCAGGCAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAACGTGAGGTCATGCGGCAGGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS-3UTR CAA 90 bp CATCCAGGGGTGGTCAGGGCTGGCCCTCGGGGCCTGACCTTGGGCAGGCTCTGTTTCTTGATGCCATACTaGTCTCTTATACCCTGCCGC +
Preference number: 5 (lower is better)
Translates to: HPGVVRAGPRGLTLGRLCFLMPY*SLIPCR
Trigger: GCGGCAGGGTATAAGAGACAAGTATGGCATCAAGAA...ACAGAGCCTGCCCAAGGTCAGGCCCCGAGGGCCAGCCCTGACCACCCCTGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS GCA 90 bp CATCTTGGCGTACTTTGCTTTGCGCTCCTCCTCTGCCTGCCGCAGTaGCTCCTGCCGCTCTTCCTCCTTCTTAGCAGCATCGGGGTCCTT +
Preference number: 5 (lower is better)
Translates to: HLGVLCFALLLCLPQ*LLPLFLLLSSIGVL
Trigger: AAGGACCCCGATGCTGCTAAGAAGGAGGAAGAGCGGCAGGAGGCACTGCGGCAGGCAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS-3UTR CAA 90 bp GGCGCAGAGAATGGCCCAGGTGAGCAAGGTACTGTGGGCCGAGCATGCTTCATCCCATCTTGGCGTACTTaGCTTTGCGCTCCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: GAENGPGEQGTVGRACFIPSWRT*LCAPPL
Trigger: CAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATGG...GATGAAGCATGCTCGGCCCACAGTACCTTGCTCACCTGGGCCATTCTCTGCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS GCA 90 bp GATGCCATACTTGTCTCTTATACCCTGCCGCATGACCTCACGTTCTaGCTCCATCTTGGCGTACTTTGCTTTGCGCTCCTCCTCTGCCTG +
Preference number: 5 (lower is better)
Translates to: DAILVSYTLPHDLTF*LHLGVLCFALLLCL
Trigger: CAGGCAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAACGTGAGGTCATGCGGCAGGGTATAAGAGACAAGTATGGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS GCA 72 bp GCTTTGCGCTCCTCCTCTGCCTGCCGCAGTGCCTCCTaGCGCTCTTCCTCCTTCTTAGCAGCATCGGGGTCC +
Preference number: 6 (lower is better)
Translates to: ALRSSSACRSAS*RSSSFLAASGS
Trigger: GGACCCCGATGCTGCTAAGAAGGAGGAAGAGCGGCAGGAGGCACTGCGGCAGGCAGAGGAGGAGCGCAAAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS CAA 72 bp TCTGGCTCATCGCCACAGCCCGGTGGGATAGCCTTCTaGGGTCGAGTCAGGCTGCCTTCCGAGTTGGCCTCC +
Preference number: 6 (lower is better)
Translates to: SGSSPQPGGIAF*GRVRLPSELAS
Trigger: GGAGGCCAACTCGGAAGGCAGCCTGACTCGACCCAAGAAGGCTATCCCACCGGGCTGTGGCGATGAGCCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS CAA 90 bp TCTTCCTCCTCTGGCTCATCGCCACAGCCCGGTGGGATAGCCTTCTaGGGTCGAGTCAGGCTGCCTTCCGAGTTGGCCTCCATGGCTGCC +
Preference number: 6 (lower is better)
Translates to: SSSSGSSPQPGGIAF*GRVRLPSELASMAA
Trigger: GGCAGCCATGGAGGCCAACTCGGAAGGCAGCCTGACTCGACCCAAGAAGGCTATCCCACCGGGCTGTGGCGATGAGCCAGAGGAGGAAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046892.10
CDS CAA 90 bp TGCCGCATGACCTCACGTTCTGCCTCCATCTTGGCGTACTTTGCTTaGCGCTCCTCCTCTGCCTGCCGCAGTGCCTCCTGCCGCTCTTCC +
Preference number: 6 (lower is better)
Translates to: CRMTSRSASILAYFA*RSSSACRSASCRSS
Trigger: GGAAGAGCGGCAGGAGGCACTGCGGCAGGCAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAACGTGAGGTCATGCGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS GCA 72 bp CTCCATCTTGGCGTACTTTGCTTTGCGCTCCTCCTCTaGCTGCCGCAGTGCCTCCTGCCGCTCTTCCTCCTT +
Preference number: 6 (lower is better)
Translates to: LHLGVLCFALLL*LPQCLLPLFLL
Trigger: AAGGAGGAAGAGCGGCAGGAGGCACTGCGGCAGGCAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS CAA 72 bp ACCTCACGTTCTGCCTCCATCTTGGCGTACTTTGCTTaGCGCTCCTCCTCTGCCTGCCGCAGTGCCTCCTGC +
Preference number: 6 (lower is better)
Translates to: TSRSASILAYFA*RSSSACRSASC
Trigger: GCAGGAGGCACTGCGGCAGGCAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAACGTGAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS GCA 72 bp CATGACCTCACGTTCTGCCTCCATCTTGGCGTACTTTaGTTTGCGCTCCTCCTCTGCCTGCCGCAGTGCCTC +
Preference number: 6 (lower is better)
Translates to: HDLTFCLHLGVL*FALLLCLPQCL
Trigger: GAGGCACTGCGGCAGGCAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAACGTGAGGTCATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS CAA 90 bp TTGTCTCTTATACCCTGCCGCATGACCTCACGTTCTGCCTCCATCTaGGCGTACTTTGCTTTGCGCTCCTCCTCTGCCTGCCGCAGTGCC +
Preference number: 6 (lower is better)
Translates to: LSLIPCRMTSRSASI*AYFALRSSSACRSA
Trigger: GGCACTGCGGCAGGCAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAACGTGAGGTCATGCGGCAGGGTATAAGAGACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS CAA 72 bp ATACCCTGCCGCATGACCTCACGTTCTGCCTCCATCTaGGCGTACTTTGCTTTGCGCTCCTCCTCTGCCTGC +
Preference number: 6 (lower is better)
Translates to: IPCRMTSRSASI*AYFALRSSSAC
Trigger: GCAGGCAGAGGAGGAGCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAACGTGAGGTCATGCGGCAGGGTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS GCA 72 bp CTTGTCTCTTATACCCTGCCGCATGACCTCACGTTCTaGCTCCATCTTGGCGTACTTTGCTTTGCGCTCCTC +
Preference number: 6 (lower is better)
Translates to: LVSYTLPHDLTF*LHLGVLCFALL
Trigger: GAGGAGCGCAAAGCAAAGTACGCCAAGATGGAGGCAGAACGTGAGGTCATGCGGCAGGGTATAAGAGACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2
CDS GCA 72 bp TCCTTCTTCTTGATGCCATACTTGTCTCTTATACCCTaGCGCATGACCTCACGTTCTGCCTCCATCTTGGCG +
Preference number: 6 (lower is better)
Translates to: SFFLMPYLSLIP*RMTSRSASILA
Trigger: CGCCAAGATGGAGGCAGAACGTGAGGTCATGCGGCAGGGTATAAGAGACAAGTATGGCATCAAGAAGAAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000046892.10
ENSMUST00000129040.2