RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPEB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039782

Ensembl transcript IDs: ENSMUST00000114065.9, ENSMUST00000114066.3, ENSMUST00000166713.9, ENSMUST00000169035.8

Found 352 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCATACCATCGACAACCAATGTTGAGATCAGTACTTTGCTCATGTaGAGGATTGTCCCAAGGGTTTGCTGCACGGGCCATACCCTTGCA +
Preference number: 1 (lower is better)
Translates to: SIPSTTNVEISTLLM*RIVPRVCCTGHTLA
Trigger: TGCAAGGGTATGGCCCGTGCAGCAAACCCTTGGGACAATCCTTCACATGAGCAAAGTACTGATCTCAACATTGGTTGTCGATGGTATGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR TCA 90 bp GTAGTGTTTTGGCTGCTGATAACGATGCATGTATCGAGAGCTGGGTaGGCAGCAGGAGAATGCACTTATTTCTTCTGCACGTCAGTGTCT +
Preference number: 1 (lower is better)
Translates to: VVFWLLITMHVSRAG*AAGECTYFFCTSVS
Trigger: AGACACTGACGTGCAGAAGAAATAAGTGCATTCTCCTGCTGCTCACCCAGCTCTCGATACATGCATCGTTATCAGCAGCCAAAACACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CCA 90 bp GCTTGTAGTGTTTTGGCTGCTGATAACGATGCATGTATCGAGAGCTaGGTGAGCAGCAGGAGAATGCACTTATTTCTTCTGCACGTCAGT +
Preference number: 1 (lower is better)
Translates to: ACSVLAADNDACIES*VSSRRMHLFLLHVS
Trigger: ACTGACGTGCAGAAGAAATAAGTGCATTCTCCTGCTGCTCACCCAGCTCTCGATACATGCATCGTTATCAGCAGCCAAAACACTACAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR GCA 90 bp AACAACAAAAACCAACATTTACCATGTGGGGTGCTTTGCTTAGACTaGAGGGTAACTCCTACATTATTAACACAGCGGCTAGCTGCTGTT +
Preference number: 1 (lower is better)
Translates to: NNKNQHLPCGVLCLD*RVTPTLLTQRLAAV
Trigger: AACAGCAGCTAGCCGCTGTGTTAATAATGTAGGAGTTACCCTGCAGTCTAAGCAAAGCACCCCACATGGTAAATGTTGGTTTTTGTTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CCA 90 bp GGTCTTTTCATGGGTCTCACATTCGGTGACTGGTTAGCAGTGTGCTaGCCATCTTTGGTTTTTAAAGGATGTCTTAACCATGAACTATCA +
Preference number: 1 (lower is better)
Translates to: GLFMGLTFGDWLAVC*PSLVFKGCLNHELS
Trigger: TGATAGTTCATGGTTAAGACATCCTTTAAAAACCAAAGATGGCCAGCACACTGCTAACCAGTCACCGAATGTGAGACCCATGAAAAGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR GCA 90 bp TATGGTCTTTTCATGGGTCTCACATTCGGTGACTGGTTAGCAGTGTaGTGGCCATCTTTGGTTTTTAAAGGATGTCTTAACCATGAACTA +
Preference number: 1 (lower is better)
Translates to: YGLFMGLTFGDWLAV*WPSLVFKGCLNHEL
Trigger: TAGTTCATGGTTAAGACATCCTTTAAAAACCAAAGATGGCCAGCACACTGCTAACCAGTCACCGAATGTGAGACCCATGAAAAGACCATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGTCCCAAGGGTTTGCTaGACGGGCCATACCCTTGCA +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNVPRVC*TGHTLA
Trigger: TGCAAGGGTATGGCCCGTGCAGCAAACCCTTGGGAC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGGGTCTCACATTCGGTaGCTGGTTAGCAGTGTGCTG +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNGSHIR*LVSSVL
Trigger: CAGCACACTGCTAACCAGTCACCGAATGTGAGACCC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATAGCAGCAGACTGTGTTaGCCCTACGCAAAACATTCT +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNSSRLC*PYAKHS
Trigger: AGAATGTTTTGCGTAGGGGCAACACAGTCTGCTGCT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCCATATTGTGCTGCCTaGATTTCATCCGCAATGCAG +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNPYCAA*ISSAMQ
Trigger: CTGCATTGCGGATGAAATGCAGGCAGCACAATATGG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATAGTACTTTGCTCATGTaGAGGATTGTCCCAAGGGTT +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNSTLLM*RIVPRV
Trigger: AACCCTTGGGACAATCCTTCACATGAGCAAAGTACT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGACTGGTTAGCAGTGTaGTGGCCATCTTTGGTTTTT +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNDWLAV*WPSLVF
Trigger: AAAAACCAAAGATGGCCAGCACACTGCTAACCAGTC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATAGTAAAGAGCTCCTCTaGAAACAGCATCAACGTCAA +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNSKELL*KQHQRQ
Trigger: TTGACGTTGATGCTGTTTTCAGAGGAGCTCTTTACT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGTGCTTTGCTTAGACTaGAGGGTAACTCCTACATTA +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNVLCLD*RVTPTL
Trigger: TAATGTAGGAGTTACCCTGCAGTCTAAGCAAAGCAC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATAGGCTTGTAGTGTTTTaGCTGCTGATAACGATGCAT +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNRLVVF*LLITMH
Trigger: ATGCATCGTTATCAGCAGCCAAAACACTACAAGCCT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTTCAAGAGAGCTTTTTaGACATCTGCAATACCTCAC +
Preference number: 2 (lower is better)
Translates to: APETLEGHGEEEVGIRTNFKRAF*TSAIPH
Trigger: GTGAGGTATTGCAGATGTTCAAAAAGCTCTCTTGAA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CAA 90 bp CATCGACAACCAATGTTGAGATCAGTACTTTGCTCATGTGAAGGATaGTCCCAAGGGTTTGCTGCACGGGCCATACCCTTGCAATTTTCT +
Preference number: 2 (lower is better)
Translates to: HRQPMLRSVLCSCEG*SQGFAARAIPLQFS
Trigger: AGAAAATTGCAAGGGTATGGCCCGTGCAGCAAACCCTTGGGACAATCCTTCACATGAGCAAAGTACTGATCTCAACATTGGTTGTCGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGTCCCAAGGGTTTGCTaGACGGGCCATACCCTTGCA +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFVPRVC*TGHTLA
Trigger: TGCAAGGGTATGGCCCGTGCAGCAAACCCTTGGGAC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CAA 90 bp TGTCCGAGTGCATGCATATGGTGGACACAGGTAAGTAAACATGCATaGTTTCACATTCTAAACTATGGCAGTTCCGGCCATATTGTGCTG +
Preference number: 2 (lower is better)
Translates to: CPSACIWWTQVSKHA*FHILNYGSSGHIVL
Trigger: CAGCACAATATGGCCGGAACTGCCATAGTTTAGAATGTGAAACAATGCATGTTTACTTACCTGTGTCCACCATATGCATGCACTCGGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTTGAGGAGAGGCTCGTaGAGCCAGATGCAACAGGGA +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLRRGS*SQMQQG
Trigger: TCCCTGTTGCATCTGGCTGCACGAGCCTCTCCTCAA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGCATGTATCGAGAGCTaGGTGAGCAGCAGGAGAATG +
Preference number: 2 (lower is better)
Translates to: YYITAHELEPHITKLHRDACIES*VSSRRM
Trigger: CATTCTCCTGCTGCTCACCCAGCTCTCGATACATGC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGGGTCTCACATTCGGTaGCTGGTTAGCAGTGTGCTG +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSGSHIR*LVSSVL
Trigger: CAGCACACTGCTAACCAGTCACCGAATGTGAGACCC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGTTCCGGCCATATTGTaGTGCCTGCATTTCATCCGC +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFVPAIL*CLHFIR
Trigger: GCGGATGAAATGCAGGCAGCACAATATGGCCGGAAC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGCATGTATCGAGAGCTaGGTGAGCAGCAGGAGAATG +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFACIES*VSSRRM
Trigger: CATTCTCCTGCTGCTCACCCAGCTCTCGATACATGC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCTCACATTCGGTGACTaGTTAGCAGTGTGCTGGCCA +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLTFGD*LAVCWP
Trigger: TGGCCAGCACACTGCTAACCAGTCACCGAATGTGAG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CAA 90 bp TCATGTGAAGGATTGTCCCAAGGGTTTGCTGCACGGGCCATACCCTaGCAATTTTCTCTCTTTAGAGTCAAAAATCTTAGTTCTGCATTT +
Preference number: 2 (lower is better)
Translates to: SCEGLSQGFAARAIP*QFSLFRVKNLSSAF
Trigger: AAATGCAGAACTAAGATTTTTGACTCTAAAGAGAGAAAATTGCAAGGGTATGGCCCGTGCAGCAAACCCTTGGGACAATCCTTCACATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATAGCAGCAGACTGTGTTaGCCCTACGCAAAACATTCT +
Preference number: 2 (lower is better)
Translates to: YYITAHELEPHITKLHRDSSRLC*PYAKHS
Trigger: AGAATGTTTTGCGTAGGGGCAACACAGTCTGCTGCT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGTTCCGGCCATATTGTaGTGCCTGCATTTCATCCGC +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSVPAIL*CLHFIR
Trigger: GCGGATGAAATGCAGGCAGCACAATATGGCCGGAAC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCTCACATTCGGTGACTaGTTAGCAGTGTGCTGGCCA +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLTFGD*LAVCWP
Trigger: TGGCCAGCACACTGCTAACCAGTCACCGAATGTGAG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAAATGGATCAAGGGTTaGCAGGGCGAGGGTGAAAAG +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFKWIKG*QGEGEK
Trigger: CTTTTCACCCTCGCCCTGCCAACCCTTGATCCATTT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCCATATTGTGCTGCCTaGATTTCATCCGCAATGCAG +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFPYCAA*ISSAMQ
Trigger: CTGCATTGCGGATGAAATGCAGGCAGCACAATATGG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCCGGCCATATTGTGCTaGCTGCATTTCATCCGCAAT +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSPAILC*LHFIRN
Trigger: ATTGCGGATGAAATGCAGGCAGCACAATATGGCCGG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATATCGAATTCCACTACTaGCCAGATCACAAAATGGCT +
Preference number: 2 (lower is better)
Translates to: YYITAHELEPHITKLHRDIEFHY*PDHKMA
Trigger: AGCCATTTTGTGATCTGGTCAGTAGTGGAATTCGAT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTAGCAGCAGACTGTGTTaGCCCTACGCAAAACATTCT +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSSSRLC*PYAKHS
Trigger: AGAATGTTTTGCGTAGGGGCAACACAGTCTGCTGCT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGCATTTCATCCGCAATaGAGTGTGTCTCTAACGTTT +
Preference number: 2 (lower is better)
Translates to: YYITAHELEPHITKLHRDAFHPQ*SVSLTF
Trigger: AAACGTTAGAGACACACTGCATTGCGGATGAAATGC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCCATATTGTGCTGCCTaGATTTCATCCGCAATGCAG +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSPYCAA*ISSAMQ
Trigger: CTGCATTGCGGATGAAATGCAGGCAGCACAATATGG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATAGGCTTGTAGTGTTTTaGCTGCTGATAACGATGCAT +
Preference number: 2 (lower is better)
Translates to: YYITAHELEPHITKLHRDRLVVF*LLITMH
Trigger: ATGCATCGTTATCAGCAGCCAAAACACTACAAGCCT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTTCAAGAGAGCTTTTTaGACATCTGCAATACCTCAC +
Preference number: 2 (lower is better)
Translates to: YYITAHELEPHITKLHRDFKRAF*TSAIPH
Trigger: GTGAGGTATTGCAGATGTTCAAAAAGCTCTCTTGAA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTATCGAATTCCACTACTaGCCAGATCACAAAATGGCT +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFIEFHY*PDHKMA
Trigger: AGCCATTTTGTGATCTGGTCAGTAGTGGAATTCGAT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAGTAAAGAGCTCCTCTaGAAACAGCATCAACGTCAA +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFSKELL*KQHQRQ
Trigger: TTGACGTTGATGCTGTTTTCAGAGGAGCTCTTTACT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTGCACTTATTTCTTCTaGACGTCAGTGTCTTCAGCA +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFCTYFF*TSVSSA
Trigger: TGCTGAAGACACTGACGTGCAGAAGAAATAAGTGCA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGTGCTTTGCTTAGACTaGAGGGTAACTCCTACATTA +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFVLCLD*RVTPTL
Trigger: TAATGTAGGAGTTACCCTGCAGTCTAAGCAAAGCAC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTCACATTCTAAACTATaGCAGTTCCGGCCATATTGT +
Preference number: 2 (lower is better)
Translates to: YYITAHELEPHITKLHRDSHSKL*QFRPYC
Trigger: ACAATATGGCCGGAACTGCCATAGTTTAGAATGTGA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATAGTGCATGCATATGGTaGACACAGGTAAGTAAACAT +
Preference number: 2 (lower is better)
Translates to: YYITAHELEPHITKLHRDSACIW*TQVSKH
Trigger: ATGTTTACTTACCTGTGTCCACCATATGCATGCACT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTATCGAATTCCACTACTaGCCAGATCACAAAATGGCT +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSIEFHY*PDHKMA
Trigger: AGCCATTTTGTGATCTGGTCAGTAGTGGAATTCGAT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR TCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCTATATCACTGCACATaGATTAGAACCGCACATCAC +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLYHCT*IRTAHH
Trigger: GTGATGTGCGGTTCTAATTCATGTGCAGTGATATAG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTGCACTTATTTCTTCTaGACGTCAGTGTCTTCAGCA +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSCTYFF*TSVSSA
Trigger: TGCTGAAGACACTGACGTGCAGAAGAAATAAGTGCA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGCATTTCATCCGCAATaGAGTGTGTCTCTAACGTTT +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSAFHPQ*SVSLTF
Trigger: AAACGTTAGAGACACACTGCATTGCGGATGAAATGC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTAGGCTTGTAGTGTTTTaGCTGCTGATAACGATGCAT +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRLVVF*LLITMH
Trigger: ATGCATCGTTATCAGCAGCCAAAACACTACAAGCCT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTCACATTCTAAACTATaGCAGTTCCGGCCATATTGT +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFSHSKL*QFRPYC
Trigger: ACAATATGGCCGGAACTGCCATAGTTTAGAATGTGA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAGTGCATGCATATGGTaGACACAGGTAAGTAAACAT +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFSACIW*TQVSKH
Trigger: ATGTTTACTTACCTGTGTCCACCATATGCATGCACT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAAAATAGCTGACTGCTaGAAAAATCGCTCACAGAGA +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFKIADC*KNRSQR
Trigger: TCTCTGTGAGCGATTTTTCCAGCAGTCAGCTATTTT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTCACATTCTAAACTATaGCAGTTCCGGCCATATTGT +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSSHSKL*QFRPYC
Trigger: ACAATATGGCCGGAACTGCCATAGTTTAGAATGTGA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTGTGCTGGCCATCTTTaGTTTTTAAAGGATGTCTTA +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFCAGHL*FLKDVL
Trigger: TAAGACATCCTTTAAAAACCAAAGATGGCCAGCACA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTCCTCTTTTAAAGTATaGTCTTTTCATGGGTCTCAC +
Preference number: 2 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFSSFKV*SFHGSH
Trigger: GTGAGACCCATGAAAAGACCATACTTTAAAAGAGGA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTGTGCTGGCCATCTTTaGTTTTTAAAGGATGTCTTA +
Preference number: 2 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSCAGHL*FLKDVL
Trigger: TAAGACATCCTTTAAAAACCAAAGATGGCCAGCACA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGATTGTCCCAAGGGTTaGCTGCACGGGCCATACCCT +
Preference number: 3 (lower is better)
Translates to: APETLEGHGEEEVGIRTNDCPKG*LHGPYP
Trigger: AGGGTATGGCCCGTGCAGCAAACCCTTGGGACAATC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGCAGTTCCGGCCATATaGTGCTGCCTGCATTTCATC +
Preference number: 3 (lower is better)
Translates to: APETLEGHGEEEVGIRTNAVPAI*CCLHFI
Trigger: GATGAAATGCAGGCAGCACAATATGGCCGGAACTGC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTGCTCATGTGAAGGATaGTCCCAAGGGTTTGCTGCA +
Preference number: 3 (lower is better)
Translates to: APETLEGHGEEEVGIRTNCSCEG*SQGFAA
Trigger: TGCAGCAAACCCTTGGGACAATCCTTCACATGAGCA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGCACGGGCCATACCCTaGCAATTTTCTCTCTTTAGA +
Preference number: 3 (lower is better)
Translates to: APETLEGHGEEEVGIRTNARAIP*QFSLFR
Trigger: TCTAAAGAGAGAAAATTGCAAGGGTATGGCCCGTGC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCTGAGATGTAGGGTTTaGGTGAAAAACAAGAGGCTT +
Preference number: 3 (lower is better)
Translates to: APETLEGHGEEEVGIRTNLRCRV*VKNKRL
Trigger: AAGCCTCTTGTTTTTCACCAAAACCCTACATCTCAG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGTACTGGGGCAGATCTaGAAGTTAAAAACCCATGTT +
Preference number: 3 (lower is better)
Translates to: APETLEGHGEEEVGIRTNVLGQI*KLKTHV
Trigger: AACATGGGTTTTTAACTTCAAGATCTGCCCCAGTAC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCATCGACAACCAATGTaGAGATCAGTACTTTGCTCA +
Preference number: 3 (lower is better)
Translates to: APETLEGHGEEEVGIRTNHRQPM*RSVLCS
Trigger: TGAGCAAAGTACTGATCTCAACATTGGTTGTCGATG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCCGCACATCACAAAATaGCACAGGGATTACAAATAT +
Preference number: 3 (lower is better)
Translates to: APETLEGHGEEEVGIRTNPHITK*HRDYKY
Trigger: ATATTTGTAATCCCTGTGCAATTTTGTGATGTGCGG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR TCA 72 bp TGGCTGCTGATAACGATGCATGTATCGAGAGCTGGGTaGGCAGCAGGAGAATGCACTTATTTCTTCTGCACG +
Preference number: 3 (lower is better)
Translates to: WLLITMHVSRAG*AAGECTYFFCT
Trigger: CGTGCAGAAGAAATAAGTGCATTCTCCTGCTGCTCACCCAGCTCTCGATACATGCATCGTTATCAGCAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTTGAGGTATTATTTCTaGCAAGTCAAAATGGAGAGC +
Preference number: 3 (lower is better)
Translates to: APETLEGHGEEEVGIRTNLRYYF*QVKMES
Trigger: GCTCTCCATTTTGACTTGCAAGAAATAATACCTCAA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR TCA 72 bp TCGACAACCAATGTTGAGATCAGTACTTTGCTCATGTaGAGGATTGTCCCAAGGGTTTGCTGCACGGGCCAT +
Preference number: 3 (lower is better)
Translates to: STTNVEISTLLM*RIVPRVCCTGH
Trigger: ATGGCCCGTGCAGCAAACCCTTGGGACAATCCTTCACATGAGCAAAGTACTGATCTCAACATTGGTTGTCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CCA 72 bp GTTTTGGCTGCTGATAACGATGCATGTATCGAGAGCTaGGTGAGCAGCAGGAGAATGCACTTATTTCTTCTG +
Preference number: 3 (lower is better)
Translates to: VLAADNDACIES*VSSRRMHLFLL
Trigger: CAGAAGAAATAAGTGCATTCTCCTGCTGCTCACCCAGCTCTCGATACATGCATCGTTATCAGCAGCCAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGATTGTCCCAAGGGTTaGCTGCACGGGCCATACCCT +
Preference number: 3 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFDCPKG*LHGPYP
Trigger: AGGGTATGGCCCGTGCAGCAAACCCTTGGGACAATC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR GCA 72 bp ACCACCACGAACGAACGATGTTCTAGGTCAGAACCGTaGATGTTTCCACGCAACTCCCTCAATAAAGAAAAA +
Preference number: 3 (lower is better)
Translates to: TTTNERCSRSEP*MFPRNSLNKEK
Trigger: TTTTTCTTTATTGAGGGAGTTGCGTGGAAACATGCACGGTTCTGACCTAGAACATCGTTCGTTCGTGGTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR GCA 72 bp GCATACCATCGACAACCAATGTTGAGATCAGTACTTTaGTCATGTGAAGGATTGTCCCAAGGGTTTGCTGCA +
Preference number: 3 (lower is better)
Translates to: AYHRQPMLRSVL*SCEGLSQGFAA
Trigger: TGCAGCAAACCCTTGGGACAATCCTTCACATGAGCAAAGTACTGATCTCAACATTGGTTGTCGATGGTATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR TCA 72 bp TCCAAAATGTGTTATATTCAAGTTTTGTGGCATCTTTaGGGAGAGGCTCGTGCAGCCAGATGCAACAGGGAT +
Preference number: 3 (lower is better)
Translates to: SKMCYIQVLWHL*GEARAARCNRD
Trigger: ATCCCTGTTGCATCTGGCTGCACGAGCCTCTCCTCAAAGATGCCACAAAACTTGAATATAACACATTTTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR GCA 72 bp AACCAACATTTACCATGTGGGGTGCTTTGCTTAGACTaGAGGGTAACTCCTACATTATTAACACAGCGGCTA +
Preference number: 3 (lower is better)
Translates to: NQHLPCGVLCLD*RVTPTLLTQRL
Trigger: TAGCCGCTGTGTTAATAATGTAGGAGTTACCCTGCAGTCTAAGCAAAGCACCCCACATGGTAAATGTTGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CCA 72 bp AATAGTGCACAACAAATGTCAAAATGGATCAAGGGTTaGCAGGGCGAGGGTGAAAAGAATGCTCCAGAAACT +
Preference number: 3 (lower is better)
Translates to: NSAQQMSKWIKG*QGEGEKNAPET
Trigger: AGTTTCTGGAGCATTCTTTTCACCCTCGCCCTGCCAACCCTTGATCCATTTTGACATTTGTTGTGCACTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGCAGTTCCGGCCATATaGTGCTGCCTGCATTTCATC +
Preference number: 3 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFAVPAI*CCLHFI
Trigger: GATGAAATGCAGGCAGCACAATATGGCCGGAACTGC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGAGGCTTGTAGTGTTTaGGCTGCTGATAACGATGCA +
Preference number: 3 (lower is better)
Translates to: YYITAHELEPHITKLHRDEACSV*AADNDA
Trigger: TGCATCGTTATCAGCAGCCAAAACACTACAAGCCTC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGCAGTTCCGGCCATATaGTGCTGCCTGCATTTCATC +
Preference number: 3 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSAVPAI*CCLHFI
Trigger: GATGAAATGCAGGCAGCACAATATGGCCGGAACTGC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTGCTCATGTGAAGGATaGTCCCAAGGGTTTGCTGCA +
Preference number: 3 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFCSCEG*SQGFAA
Trigger: TGCAGCAAACCCTTGGGACAATCCTTCACATGAGCA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGAGGCTTGTAGTGTTTaGGCTGCTGATAACGATGCA +
Preference number: 3 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFEACSV*AADNDA
Trigger: TGCATCGTTATCAGCAGCCAAAACACTACAAGCCTC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTACGGGGAGGAAGAGGTaGGGATACGGACAAATAAAT +
Preference number: 3 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFTGRKR*GYGQIN
Trigger: ATTTATTTGTCCGTATCCCAACCTCTTCCTCCCCGT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGAGGCTTGTAGTGTTTaGGCTGCTGATAACGATGCA +
Preference number: 3 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSEACSV*AADNDA
Trigger: TGCATCGTTATCAGCAGCCAAAACACTACAAGCCTC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCTGAGATGTAGGGTTTaGGTGAAAAACAAGAGGCTT +
Preference number: 3 (lower is better)
Translates to: YYITAHELEPHITKLHRDLRCRV*VKNKRL
Trigger: AAGCCTCTTGTTTTTCACCAAAACCCTACATCTCAG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGTACTGGGGCAGATCTaGAAGTTAAAAACCCATGTT +
Preference number: 3 (lower is better)
Translates to: YYITAHELEPHITKLHRDVLGQI*KLKTHV
Trigger: AACATGGGTTTTTAACTTCAAGATCTGCCCCAGTAC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR GCA 72 bp AAGCAATTCTTAACCATTAAGAATAACAATGCTCCATaGAACAGTGACCCCAGTTTAGACAGAAGACCCCAT +
Preference number: 3 (lower is better)
Translates to: KQFLTIKNNNAP*NSDPSLDRRPH
Trigger: ATGGGGTCTTCTGTCTAAACTGGGGTCACTGTTGCATGGAGCATTGTTATTCTTAATGGTTAAGAATTGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR TCA 72 bp ATTACATCCAGTCTGCATAAAATCGAATTCCACTACTaGCCAGATCACAAAATGGCTGCACTCTCTAATCTA +
Preference number: 3 (lower is better)
Translates to: ITSSLHKIEFHY*PDHKMAALSNL
Trigger: TAGATTAGAGAGTGCAGCCATTTTGTGATCTGGTCAGTAGTGGAATTCGATTTTATGCAGACTGGATGTAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR GCA 72 bp AACAACAAAAACCAACATTTACCATGTGGGGTGCTTTaGTTAGACTGCAGGGTAACTCCTACATTATTAACA +
Preference number: 3 (lower is better)
Translates to: NNKNQHLPCGVL*LDCRVTPTLLT
Trigger: TGTTAATAATGTAGGAGTTACCCTGCAGTCTAAGCAAAGCACCCCACATGGTAAATGTTGGTTTTTGTTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCCGCACATCACAAAATaGCACAGGGATTACAAATAT +
Preference number: 3 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSPHITK*HRDYKY
Trigger: ATATTTGTAATCCCTGTGCAATTTTGTGATGTGCGG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTTGAGGTATTATTTCTaGCAAGTCAAAATGGAGAGC +
Preference number: 3 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLRYYF*QVKMES
Trigger: GCTCTCCATTTTGACTTGCAAGAAATAATACCTCAA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTGGGGCGGCTGCGGCTaGTGGGGTGGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNWGGCG*WGGCCW
Trigger: CCAGCAGCAGCCACCCCAGCAGCCGCAGCCGCCCCA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTGTGGTTGCGGCGGCTaGTGGGGCGGCTGCGGCTGC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNCGCGG*WGGCGC
Trigger: GCAGCCGCAGCCGCCCCAGCAGCCGCCGCAACCACA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATAGGTCGACCGGGCGCTaGCGCTGGGCGAAGTCCTGC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNRSTGR*RWAKSC
Trigger: GCAGGACTTCGCCCAGCGGCAGCGCCCGGTCGACCT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCGCAGCAGGGCAGTGTaGAGCACCCCGAACCCGAAG +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNRSRAV*STPNPK
Trigger: CTTCGGGTTCGGGGTGCTGCACACTGCCCTGCTGCG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATATCGTGGGCTGCCGCTaGGCAGCAGGGCAGTGTGCA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNIVGCR*AAGQCA
Trigger: TGCACACTGCCCTGCTGCGCAGCGGCAGCCCACGAT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATAGCGGCCTCGTCGGCTaGTGTGTCAGCCCGAGCAGT +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNSGLVG*CVSPSS
Trigger: ACTGCTCGGGCTGACACAGCAGCCGACGAGGCCGCT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTGCTGCTGCTGCAGCTaGGGGCTGACGGGTGACCTC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNCCCCS*GLTGDL
Trigger: GAGGTCACCCGTCAGCCCGCAGCTGCAGCAGCAGCA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTTGCTCCCCAGGACATaGTCGCAGTGCCCCAACCGC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNLLPRT*SQCPNR
Trigger: GCGGTTGGGGCACTGCGAGCATGTCCTGGGGAGCAA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATAGAAGGCCGGGTTCATaGACGATGGCAGCCCGGGGT +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNRRPGS*TMAARG
Trigger: ACCCCGGGCTGCCATCGTCCATGAACCCGGCCTTCT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGGTGCAGACTCGGTTTaGAGTCCTGGGAGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNGADSV*SPGRGG
Trigger: TCCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCAGCGGAAGTGGATCTaGCGTGGGCGATCAGCACCT +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNQRKWI*RGRSAP
Trigger: AGGTGCTGATCGCCCACGTCAGATCCACTTCCGCTG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTACGAGTTCCTCTGCTaGAGGAAGGCGGCTGCGGCA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNYEFLC*RKAAAA
Trigger: TGCCGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCCATGTTGCCGCTCCTaGGGTGATCTCTGCCGTGCA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNPCCRS*GDLCRA
Trigger: TGCACGGCAGAGATCACCGCAGGAGCGGCAACATGG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCTCGGTTTGAAGTCCTaGGAGGGGAGGAGGTGGGTC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNLGLKS*EGRRWV
Trigger: GACCCACCTCCTCCCCTCCCAGGACTTCAAACCGAG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGAGGAGGAGGGGTGGTaGAGACTCGGTTTGAAGTCC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNEEEGW*RLGLKS
Trigger: GGACTTCAAACCGAGTCTGCACCACCCCTCCTCCTC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCTGCTCAGCTGCTGCTaGTGCCGCTTACTGAAGTCC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNLLSCC*CRLLKS
Trigger: GGACTTCAGTAAGCGGCAGCAGCAGCAGCTGAGCAG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTGGCTGCTCAGCTGCTaGTGCTGCCGCTTACTGAAG +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNWLLSC*CCRLLK
Trigger: CTTCAGTAAGCGGCAGCAGCAGCAGCTGAGCAGCCA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGAGGAGGAGGAGGGGTaGTGCAGACTCGGTTTGAAG +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNEEEEG*CRLGLK
Trigger: CTTCAAACCGAGTCTGCACCACCCCTCCTCCTCCTC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCTGTTGAGCAGAGGGTaGTTGGGCGACTCCATGGAG +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNLLSRG*LGDSME
Trigger: CTCCATGGAGTCGCCCAACCACCCTCTGCTCAACAG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATAGAAGAGGCTGGTGGTaGTTGTACGAGTTCCTCTGC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNRRGWW*LYEFLC
Trigger: GCAGAGGAACTCGTACAACCACCACCAGCCTCTTCT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCTGATTCATAGTCCCTaGGATCCCCATGTTGCCGCT +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNLIHSP*DPHVAA
Trigger: AGCGGCAACATGGGGATCCCAGGGACTATGAATCAG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGATCCTGGTCTATTCTaGATGTTCCGGCTGCAGTGC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNDPGLF*MFRLQC
Trigger: GCACTGCAGCCGGAACATCCAGAATAGACCAGGATC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGTCGGTTCCTGGATGTaGATAGCTCAGACGACCCTT +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNVGSWM*IAQTTL
Trigger: AAGGGTCGTCTGAGCTATCCACATCCAGGAACCGAC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGAAGTGGATCTGACGTaGGCGATCAGCACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNEVDLT*AISTFL
Trigger: AAGGAAGGTGCTGATCGCCCACGTCAGATCCACTTC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATAGAGGAAGCTGCGGCTaGGCTGGCCGCGCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDRGSCG*AGRAAA
Trigger: GGCGGCGGCGCGGCCAGCTCAGCCGCAGCTTCCTCT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTCTGGATGTTCCGGCTaGAGTGCACCAACTATCTTG +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNSGCSG*SAPTIL
Trigger: CAAGATAGTTGGTGCACTGCAGCCGGAACATCCAGA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATATGGAACTCGCGTCCTaGACGAGAGTGGATATTTGC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNMELAS*TRVDIC
Trigger: GCAAATATCCACTCTCGTGCAGGACGCGAGTTCCAT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTTCAGAAGAGGCTGGTaGTGGTTGTACGAGTTCCTC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNFRRGW*WLYEFL
Trigger: GAGGAACTCGTACAACCACCACCAGCCTCTTCTGAA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCAGATTGTCGGTTCCTaGATGTGGATAGCTCAGACG +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNQIVGS*MWIAQT
Trigger: CGTCTGAGCTATCCACATCCAGGAACCGACAATCTG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTTCACCAATGGCTTATaGAACTCGCGTCCTGCACGA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNFTNGL*NSRPAR
Trigger: TCGTGCAGGACGCGAGTTCCATAAGCCATTGGTGAA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAGAGGAAGCTGCGGCTaGGCTGGCCGCGCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFRGSCG*AGRAAA
Trigger: GGCGGCGGCGCGGCCAGCTCAGCCGCAGCTTCCTCT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCTGCGGGCTGACGGGTaGCCTCCGGCTCTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDLRADG*PPALRL
Trigger: CAGCCGCAGAGCCGGAGGTCACCCGTCAGCCCGCAG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTCACACCCGCGTTCGTaGCGCCGCCGGGGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDSHPRS*RRRGGG
Trigger: GCCACCACCCCGGCGGCGGCACGAACGCGGGTGTGA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTGTGGTTGCGGCGGCTaGTGGGGCGGCTGCGGCTGC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDCGCGG*WGGCGC
Trigger: GCAGCCGCAGCCGCCCCAGCAGCCGCCGCAACCACA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCCCTTGAGAGGATCGTaGTCTGCTCTCATGATATCA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNPLRGS*SALMIS
Trigger: TGATATCATGAGAGCAGAGCACGATCCTCTCAAGGG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGTGCACCAACTATCTTaGAGTGAATCTGAGCCCCAA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNVHQLS*SESEPQ
Trigger: TTGGGGCTCAGATTCACTCCAAGATAGTTGGTGCAC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCGTCCTGCACGAGAGTaGATATTTGCCCAACAAAAC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNRPARE*IFAQQN
Trigger: GTTTTGTTGGGCAAATATCCACTCTCGTGCAGGACG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTAGAGGAAGCTGCGGCTaGGCTGGCCGCGCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRGSCG*AGRAAA
Trigger: GGCGGCGGCGCGGCCAGCTCAGCCGCAGCTTCCTCT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGCGTGTGCGGGAGGCTaGACGGCTGAGAGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDACAGG*TAESAG
Trigger: CCCAGCGCTCTCAGCCGTTCAGCCTCCCGCACACGC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGCTGCAGCTGCGGGCTaGCGGGTGACCTCCGGCTCT +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDAAAAG*RVTSGS
Trigger: AGAGCCGGAGGTCACCCGTCAGCCCGCAGCTGCAGC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTCACACCCGCGTTCGTaGCGCCGCCGGGGTGGTGGC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFSHPRS*RRRGGG
Trigger: GCCACCACCCCGGCGGCGGCACGAACGCGGGTGTGA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCGCTGGGCGAAGTCCTaGGGCGGGAGGTGCTGCGTG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDRWAKS*GGRCCV
Trigger: CACGCAGCACCTCCCGCCGCAGGACTTCGCCCAGCG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTGTGGTTGCGGCGGCTaGTGGGGCGGCTGCGGCTGC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFCGCGG*WGGCGC
Trigger: GCAGCCGCAGCCGCCCCAGCAGCCGCCGCAACCACA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTTCGCGTCCGGAGGGTaGGGACGGTGTGGCGGGCTC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDFASGG*GRCGGL
Trigger: GAGCCCGCCACACCGTCCCCACCCTCCGGACGCGAA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGCGTGTGCGGGAGGCTaGACGGCTGAGAGCGCTGGG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFACAGG*TAESAG
Trigger: CCCAGCGCTCTCAGCCGTTCAGCCTCCCGCACACGC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCTGCGGGCTGACGGGTaGCCTCCGGCTCTGCGGCTG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLRADG*PPALRL
Trigger: CAGCCGCAGAGCCGGAGGTCACCCGTCAGCCCGCAG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGCTGCAGCTGCGGGCTaGCGGGTGACCTCCGGCTCT +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFAAAAG*RVTSGS
Trigger: AGAGCCGGAGGTCACCCGTCAGCCCGCAGCTGCAGC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTTCGGAAGCTGGCAGTaGTCTCATCTTCATCAATAT +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNFGSWQ*SHLHQY
Trigger: ATATTGATGAAGATGAGATCACTGCCAGCTTCCGAA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCGCTGGGCGAAGTCCTaGGGCGGGAGGTGCTGCGTG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFRWAKS*GGRCCV
Trigger: CACGCAGCACCTCCCGCCGCAGGACTTCGCCCAGCG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAGGTCGACCGGGCGCTaGCGCTGGGCGAAGTCCTGC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFRSTGR*RWAKSC
Trigger: GCAGGACTTCGCCCAGCGGCAGCGCCCGGTCGACCT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTGGGGCGGCTGCGGCTaGTGGGGTGGCTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSWGGCG*WGGCCW
Trigger: CCAGCAGCAGCCACCCCAGCAGCCGCAGCCGCCCCA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGCAGCCTGGTGCTGCTaGTGCAGCTGCGGGCTGACG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDAAWCC*CSCGLT
Trigger: CGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGCTGC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGGTTGGGCGACTCCATaGAGCCCGGCGCGGGGTTCA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDGWATP*SPARGS
Trigger: TGAACCCCGCGCCGGGCTCCATGGAGTCGCCCAACC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATATTCTACTTCGATCCTaGTCTATTCTGGATGTTCCG +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNILLRS*SILDVP
Trigger: CGGAACATCCAGAATAGACCAGGATCGAAGTAGAAT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTTGGCGGTGTTGGGCTaGAGCGGCCGGGGCAGTGGA +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLAVLG*SGRGSG
Trigger: TCCACTGCCCCGGCCGCTTCAGCCCAACACCGCCAA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCGCAGCAGGGCAGTGTaGAGCACCCCGAACCCGAAG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDRSRAV*STPNPK
Trigger: CTTCGGGTTCGGGGTGCTGCACACTGCCCTGCTGCG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATAGCGGCCTCGTCGGCTaGTGTGTCAGCCCGAGCAGT +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDSGLVG*CVSPSS
Trigger: ACTGCTCGGGCTGACACAGCAGCCGACGAGGCCGCT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCGCTGGGCGAAGTCCTaGGGCGGGAGGTGCTGCGTG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRWAKS*GGRCCV
Trigger: CACGCAGCACCTCCCGCCGCAGGACTTCGCCCAGCG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTAGGTCGACCGGGCGCTaGCGCTGGGCGAAGTCCTGC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRSTGR*RWAKSC
Trigger: GCAGGACTTCGCCCAGCGGCAGCGCCCGGTCGACCT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTGCTGCTGCTGCAGCTaGGGGCTGACGGGTGACCTC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDCCCCS*GLTGDL
Trigger: GAGGTCACCCGTCAGCCCGCAGCTGCAGCAGCAGCA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGCCTGGTGCTGCTGCTaGAGCTGCGGGCTGACGGGT +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFAWCCC*SCGLTG
Trigger: ACCCGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGCAGCCTGGTGCTGCTaGTGCAGCTGCGGGCTGACG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFAAWCC*CSCGLT
Trigger: CGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGCTGC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATAGTGAATTTCGGTGGTaGTATAACATTACCCGAGAA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNSEFRW*YNITRE
Trigger: TTCTCGGGTAATGTTATAGCACCACCGAAATTCACT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATATCTGTATCAATTCCTaGGTAACACACACCACCATA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNICINS*VTHTTI
Trigger: TATGGTGGTGTGTGTTACGCAGGAATTGATACAGAT...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTGGGAGGGGAGGAGGTaGGTCACACCCGCGTTCGTG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDWEGRR*VTPAFV
Trigger: CACGAACGCGGGTGTGACCCACCTCCTCCCCTCCCA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTTCGCGTCCGGAGGGTaGGGACGGTGTGGCGGGCTC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSFASGG*GRCGGL
Trigger: GAGCCCGCCACACCGTCCCCACCCTCCGGACGCGAA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTTACTTTCTGCTTTGTaGGGCCAATCTACTACCAAA +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNLLSAL*GQSTTK
Trigger: TTTGGTAGTAGATTGGCCCCACAAAGCAGAAAGTAA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CAA 72 bp CCAATGTTGAGATCAGTACTTTGCTCATGTGAAGGATaGTCCCAAGGGTTTGCTGCACGGGCCATACCCTTG +
Preference number: 4 (lower is better)
Translates to: PMLRSVLCSCEG*SQGFAARAIPL
Trigger: CAAGGGTATGGCCCGTGCAGCAAACCCTTGGGACAATCCTTCACATGAGCAAAGTACTGATCTCAACATTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGCCGGCGGCTGCTGTTaGGGTAAATTCATGGCGGGC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDAGGCC*GKFMAG
Trigger: GCCCGCCATGAATTTACCTCAACAGCAGCCGCCGGC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAGCGGCCTCGTCGGCTaGTGTGTCAGCCCGAGCAGT +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFSGLVG*CVSPSS
Trigger: ACTGCTCGGGCTGACACAGCAGCCGACGAGGCCGCT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGCCTGGTGCTGCTGCTaGAGCTGCGGGCTGACGGGT +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSAWCCC*SCGLTG
Trigger: ACCCGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGCAGCCTGGTGCTGCTaGTGCAGCTGCGGGCTGACG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSAAWCC*CSCGLT
Trigger: CGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGCTGC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTGGGAGGGGAGGAGGTaGGTCACACCCGCGTTCGTG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFWEGRR*VTPAFV
Trigger: CACGAACGCGGGTGTGACCCACCTCCTCCCCTCCCA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGGTTGGGCGACTCCATaGAGCCCGGCGCGGGGTTCA +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSGWATP*SPARGS
Trigger: TGAACCCCGCGCCGGGCTCCATGGAGTCGCCCAACC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCGGGTTCATGGACGATaGCAGCCCGGGGTAGAAGCC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDRVHGR*QPGVEA
Trigger: GGCTTCTACCCCGGGCTGCCATCGTCCATGAACCCG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CAA 72 bp CAGTACTTTGCTCATGTGAAGGATTGTCCCAAGGGTTaGCTGCACGGGCCATACCCTTGCAATTTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: QYFAHVKDCPKG*LHGPYPCNFLS
Trigger: AGAGAGAAAATTGCAAGGGTATGGCCCGTGCAGCAAACCCTTGGGACAATCCTTCACATGAGCAAAGTACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGGTGCAGACTCGGTTTaGAGTCCTGGGAGGGGAGGA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDGADSV*SPGRGG
Trigger: TCCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGCCGGCGGCTGCTGTTaGGGTAAATTCATGGCGGGC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFAGGCC*GKFMAG
Trigger: GCCCGCCATGAATTTACCTCAACAGCAGCCGCCGGC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCAGCGGAAGTGGATCTaGCGTGGGCGATCAGCACCT +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDQRKWI*RGRSAP
Trigger: AGGTGCTGATCGCCCACGTCAGATCCACTTCCGCTG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCGCAGCAGGGCAGTGTaGAGCACCCCGAACCCGAAG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRSRAV*STPNPK
Trigger: CTTCGGGTTCGGGGTGCTGCACACTGCCCTGCTGCG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTATCGTGGGCTGCCGCTaGGCAGCAGGGCAGTGTGCA +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSIVGCR*AAGQCA
Trigger: TGCACACTGCCCTGCTGCGCAGCGGCAGCCCACGAT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTGCTGCTGCTGCAGCTaGGGGCTGACGGGTGACCTC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSCCCCS*GLTGDL
Trigger: GAGGTCACCCGTCAGCCCGCAGCTGCAGCAGCAGCA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTACGAGTTCCTCTGCTaGAGGAAGGCGGCTGCGGCA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDYEFLC*RKAAAA
Trigger: TGCCGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTTGCTCCCCAGGACATaGTCGCAGTGCCCCAACCGC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLLPRT*SQCPNR
Trigger: GCGGTTGGGGCACTGCGAGCATGTCCTGGGGAGCAA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGAATTTTCCAGAGAGTaGATATTCAAGCTATCATAC +
Preference number: 4 (lower is better)
Translates to: APETLEGHGEEEVGIRTNEFSRE*IFKLSY
Trigger: GTATGATAGCTTGAATATGCACTCTCTGGAAAATTC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTGGGAGGGGAGGAGGTaGGTCACACCCGCGTTCGTG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSWEGRR*VTPAFV
Trigger: CACGAACGCGGGTGTGACCCACCTCCTCCCCTCCCA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCGGGTTCATGGACGATaGCAGCCCGGGGTAGAAGCC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFRVHGR*QPGVEA
Trigger: GGCTTCTACCCCGGGCTGCCATCGTCCATGAACCCG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGCCGGCGGCTGCTGTTaGGGTAAATTCATGGCGGGC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSAGGCC*GKFMAG
Trigger: GCCCGCCATGAATTTACCTCAACAGCAGCCGCCGGC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCCCCAACCGCTGTTCTaGTGGTTGCTCCAAGGAGAC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDPQPLF*WLLQGD
Trigger: GTCTCCTTGGAGCAACCATCAGAACAGCGGTTGGGG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGAGGAGGAGGGGTGGTaGAGACTCGGTTTGAAGTCC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDEEEGW*RLGLKS
Trigger: GGACTTCAAACCGAGTCTGCACCACCCCTCCTCCTC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCTTTCCTCTTCTGGCTaGTCAGCTGCTGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDLSSSG*SAAAAA
Trigger: GGCAGCAGCAGCAGCTGAGCAGCCAGAAGAGGAAAG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTCCTGCGGTGATCTCTaGCGTGCATTGCTCCCCAGG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFSCGDL*RALLPR
Trigger: CCTGGGGAGCAATGCACGGCAGAGATCACCGCAGGA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCCATGTTGCCGCTCCTaGGGTGATCTCTGCCGTGCA +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFPCCRS*GDLCRA
Trigger: TGCACGGCAGAGATCACCGCAGGAGCGGCAACATGG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCTCGGTTTGAAGTCCTaGGAGGGGAGGAGGTGGGTC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLGLKS*EGRRWV
Trigger: GACCCACCTCCTCCCCTCCCAGGACTTCAAACCGAG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAGGGTGGGGACGGTGTaGCGGGCTCAACTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFRVGTV*RAQLFP
Trigger: AGGAAAGAGTTGAGCCCGCCACACCGTCCCCACCCT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCTGTTGAGCAGAGGGTaGTTGGGCGACTCCATGGAG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDLLSRG*LGDSME
Trigger: CTCCATGGAGTCGCCCAACCACCCTCTGCTCAACAG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCGGGTTCATGGACGATaGCAGCCCGGGGTAGAAGCC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRVHGR*QPGVEA
Trigger: GGCTTCTACCCCGGGCTGCCATCGTCCATGAACCCG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCCCCAACCGCTGTTCTaGTGGTTGCTCCAAGGAGAC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFPQPLF*WLLQGD
Trigger: GTCTCCTTGGAGCAACCATCAGAACAGCGGTTGGGG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCAGCGGAAGTGGATCTaGCGTGGGCGATCAGCACCT +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSQRKWI*RGRSAP
Trigger: AGGTGCTGATCGCCCACGTCAGATCCACTTCCGCTG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCTTTCCTCTTCTGGCTaGTCAGCTGCTGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLSSSG*SAAAAA
Trigger: GGCAGCAGCAGCAGCTGAGCAGCCAGAAGAGGAAAG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTACGAGTTCCTCTGCTaGAGGAAGGCGGCTGCGGCA +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSYEFLC*RKAAAA
Trigger: TGCCGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTTGTACGAGTTCCTCTaGTGCAGGAAGGCGGCTGCG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLYEFL*CRKAAA
Trigger: CGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTACAA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTCCTGCGGTGATCTCTaGCGTGCATTGCTCCCCAGG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSSCGDL*RALLPR
Trigger: CCTGGGGAGCAATGCACGGCAGAGATCACCGCAGGA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTAGGGTGGGGACGGTGTaGCGGGCTCAACTCTTTCCT +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRVGTV*RAQLFP
Trigger: AGGAAAGAGTTGAGCCCGCCACACCGTCCCCACCCT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCTGTTGAGCAGAGGGTaGTTGGGCGACTCCATGGAG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLLSRG*LGDSME
Trigger: CTCCATGGAGTCGCCCAACCACCCTCTGCTCAACAG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCCCCAACCGCTGTTCTaGTGGTTGCTCCAAGGAGAC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSPQPLF*WLLQGD
Trigger: GTCTCCTTGGAGCAACCATCAGAACAGCGGTTGGGG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGAGGAGGAGGGGTGGTaGAGACTCGGTTTGAAGTCC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSEEEGW*RLGLKS
Trigger: GGACTTCAAACCGAGTCTGCACCACCCCTCCTCCTC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCTCAGCTGCTGCTGCTaGCGCTTACTGAAGTCCTGC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLSCCC*RLLKSC
Trigger: GCAGGACTTCAGTAAGCGGCAGCAGCAGCAGCTGAG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTGGCTGCTCAGCTGCTaGTGCTGCCGCTTACTGAAG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSWLLSC*CCRLLK
Trigger: CTTCAGTAAGCGGCAGCAGCAGCAGCTGAGCAGCCA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCTTTCCTCTTCTGGCTaGTCAGCTGCTGCTGCTGCC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLSSSG*SAAAAA
Trigger: GGCAGCAGCAGCAGCTGAGCAGCCAGAAGAGGAAAG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTTGTACGAGTTCCTCTaGTGCAGGAAGGCGGCTGCG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLYEFL*CRKAAA
Trigger: CGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTACAA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATAGAAGAGGCTGGTGGTaGTTGTACGAGTTCCTCTGC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDRRGWW*LYEFLC
Trigger: GCAGAGGAACTCGTACAACCACCACCAGCCTCTTCT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGAAGTGGATCTGACGTaGGCGATCAGCACCTTCCTT +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDEVDLT*AISTFL
Trigger: AAGGAAGGTGCTGATCGCCCACGTCAGATCCACTTC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CAA 72 bp GGATTGTCCCAAGGGTTTGCTGCACGGGCCATACCCTaGCAATTTTCTCTCTTTAGAGTCAAAAATCTTAGT +
Preference number: 4 (lower is better)
Translates to: GLSQGFAARAIP*QFSLFRVKNLS
Trigger: ACTAAGATTTTTGACTCTAAAGAGAGAAAATTGCAAGGGTATGGCCCGTGCAGCAAACCCTTGGGACAATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCCCCAAGCTGGCAACTaGAAACTAGATCTCACCTGT +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDPQAGN*KLDLTC
Trigger: ACAGGTGAGATCTAGTTTGCAGTTGCCAGCTTGGGG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATATGTTCCGGCTGCAGTaGACCAACTATCTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDMFRLQ*TNYLGV
Trigger: CACTCCAAGATAGTTGGTGCACTGCAGCCGGAACAT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCTGATTCATAGTCCCTaGGATCCCCATGTTGCCGCT +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLIHSP*DPHVAA
Trigger: AGCGGCAACATGGGGATCCCAGGGACTATGAATCAG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGATCCTGGTCTATTCTaGATGTTCCGGCTGCAGTGC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFDPGLF*MFRLQC
Trigger: GCACTGCAGCCGGAACATCCAGAATAGACCAGGATC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTTCACCAATGGCTTATaGAACTCGCGTCCTGCACGA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDFTNGL*NSRPAR
Trigger: TCGTGCAGGACGCGAGTTCCATAAGCCATTGGTGAA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CAA 72 bp GCATGCATATGGTGGACACAGGTAAGTAAACATGCATaGTTTCACATTCTAAACTATGGCAGTTCCGGCCAT +
Preference number: 4 (lower is better)
Translates to: ACIWWTQVSKHA*FHILNYGSSGH
Trigger: ATGGCCGGAACTGCCATAGTTTAGAATGTGAAACAATGCATGTTTACTTACCTGTGTCCACCATATGCATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATAATGAGTGCCTGGACTaGGCTCTCTTCTTGAAAGAG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDNECLD*ALFLKE
Trigger: CTCTTTCAAGAAGAGAGCTCAGTCCAGGCACTCATT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCGCTGTTCTGATGGTTaGTCCAAGGAGACTGTTTCA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDRCSDG*SKETVS
Trigger: TGAAACAGTCTCCTTGGAGCAACCATCAGAACAGCG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCCCCAAGCTGGCAACTaGAAACTAGATCTCACCTGT +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFPQAGN*KLDLTC
Trigger: ACAGGTGAGATCTAGTTTGCAGTTGCCAGCTTGGGG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTATGTTCCGGCTGCAGTaGACCAACTATCTTGGAGTG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFMFRLQ*TNYLGV
Trigger: CACTCCAAGATAGTTGGTGCACTGCAGCCGGAACAT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTCTGGATGTTCCGGCTaGAGTGCACCAACTATCTTG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFSGCSG*SAPTIL
Trigger: CAAGATAGTTGGTGCACTGCAGCCGGAACATCCAGA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATCCCTTGAGAGGATCGTaGTCTGCTCTCATGATATCA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDPLRGS*SALMIS
Trigger: TGATATCATGAGAGCAGAGCACGATCCTCTCAAGGG...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTATGGAACTCGCGTCCTaGACGAGAGTGGATATTTGC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFMELAS*TRVDIC
Trigger: GCAAATATCCACTCTCGTGCAGGACGCGAGTTCCAT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTTCAGAAGAGGCTGGTaGTGGTTGTACGAGTTCCTC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFFRRGW*WLYEFL
Trigger: GAGGAACTCGTACAACCACCACCAGCCTCTTCTGAA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTGTTTCAGAAGAGGCTaGTGGTGGTTGTACGAGTTC +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDCFRRG*WWLYEF
Trigger: GAACTCGTACAACCACCACCAGCCTCTTCTGAAACA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCTGATTCATAGTCCCTaGGATCCCCATGTTGCCGCT +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLIHSP*DPHVAA
Trigger: AGCGGCAACATGGGGATCCCAGGGACTATGAATCAG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGTCGGTTCCTGGATGTaGATAGCTCAGACGACCCTT +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSVGSWM*IAQTTL
Trigger: AAGGGTCGTCTGAGCTATCCACATCCAGGAACCGAC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCAGATTGTCGGTTCCTaGATGTGGATAGCTCAGACG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFQIVGS*MWIAQT
Trigger: CGTCTGAGCTATCCACATCCAGGAACCGACAATCTG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTACCTTCCTTCACCAATaGCTTATGGAACTCGCGTCC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFTFLHQ*LMELAS
Trigger: GGACGCGAGTTCCATAAGCCATTGGTGAAGGAAGGT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATAGATTTTGGAGTCAGTaGTGGAGTAGAGCGAGTGAA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDRFWSQ*WSRASE
Trigger: TTCACTCGCTCTACTCCATCACTGACTCCAAAATCT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAATGAGTGCCTGGACTaGGCTCTCTTCTTGAAAGAG +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFNECLD*ALFLKE
Trigger: CTCTTTCAAGAAGAGAGCTCAGTCCAGGCACTCATT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTGTTTCAGAAGAGGCTaGTGGTGGTTGTACGAGTTC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFCFRRG*WWLYEF
Trigger: GAACTCGTACAACCACCACCAGCCTCTTCTGAAACA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGTGCACCAACTATCTTaGAGTGAATCTGAGCCCCAA +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFVHQLS*SESEPQ
Trigger: TTGGGGCTCAGATTCACTCCAAGATAGTTGGTGCAC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCAGATTGTCGGTTCCTaGATGTGGATAGCTCAGACG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSQIVGS*MWIAQT
Trigger: CGTCTGAGCTATCCACATCCAGGAACCGACAATCTG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCGTCCTGCACGAGAGTaGATATTTGCCCAACAAAAC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFRPARE*IFAQQN
Trigger: GTTTTGTTGGGCAAATATCCACTCTCGTGCAGGACG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTTCACCAATGGCTTATaGAACTCGCGTCCTGCACGA +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSFTNGL*NSRPAR
Trigger: TCGTGCAGGACGCGAGTTCCATAAGCCATTGGTGAA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAGATTTTGGAGTCAGTaGTGGAGTAGAGCGAGTGAA +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFRFWSQ*WSRASE
Trigger: TTCACTCGCTCTACTCCATCACTGACTCCAAAATCT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTTCGGAAGCTGGCAGTaGTCTCATCTTCATCAATAT +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDFGSWQ*SHLHQY
Trigger: ATATTGATGAAGATGAGATCACTGCCAGCTTCCGAA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTAATGAGTGCCTGGACTaGGCTCTCTTCTTGAAAGAG +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSNECLD*ALFLKE
Trigger: CTCTTTCAAGAAGAGAGCTCAGTCCAGGCACTCATT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCGCTGTTCTGATGGTTaGTCCAAGGAGACTGTTTCA +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRCSDG*SKETVS
Trigger: TGAAACAGTCTCCTTGGAGCAACCATCAGAACAGCG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTGTTTCAGAAGAGGCTaGTGGTGGTTGTACGAGTTC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSCFRRG*WWLYEF
Trigger: GAACTCGTACAACCACCACCAGCCTCTTCTGAAACA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATATTCTACTTCGATCCTaGTCTATTCTGGATGTTCCG +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDILLRS*SILDVP
Trigger: CGGAACATCCAGAATAGACCAGGATCGAAGTAGAAT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTCGTCCTGCACGAGAGTaGATATTTGCCCAACAAAAC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRPARE*IFAQQN
Trigger: GTTTTGTTGGGCAAATATCCACTCTCGTGCAGGACG...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
3UTR CAA 72 bp CAACAACAAAAACCAACATTTACCATGTGGGGTGCTTaGCTTAGACTGCAGGGTAACTCCTACATTATTAAC +
Preference number: 4 (lower is better)
Translates to: QQQKPTFTMWGA*LRLQGNSYIIN
Trigger: GTTAATAATGTAGGAGTTACCCTGCAGTCTAAGCAAAGCACCCCACATGGTAAATGTTGGTTTTTGTTGTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR TCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTTCGGAAGCTGGCAGTaGTCTCATCTTCATCAATAT +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFFGSWQ*SHLHQY
Trigger: ATATTGATGAAGATGAGATCACTGCCAGCTTCCGAA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATAGTGAATTTCGGTGGTaGTATAACATTACCCGAGAA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDSEFRW*YNITRE
Trigger: TTCTCGGGTAATGTTATAGCACCACCGAAATTCACT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTTGAAAGAGGAGGAATaGATAGCCTTTTGGTGGAAA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDLKEEE*IAFWWK
Trigger: TTTCCACCAAAAGGCTATGCATTCCTCCTCTTTCAA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATATCTGTATCAATTCCTaGGTAACACACACCACCATA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDICINS*VTHTTI
Trigger: TATGGTGGTGTGTGTTACGCAGGAATTGATACAGAT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATACGAGAGTGGATATTTaGCCAACAAAACTCACAGTA +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDTRVDI*PTKLTV
Trigger: TACTGTGAGTTTTGTTGGGCAAATATCCACTCTCGT...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTTGAAAGAGGAGGAATaGATAGCCTTTTGGTGGAAA +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFLKEEE*IAFWWK
Trigger: TTTCCACCAAAAGGCTATGCATTCCTCCTCTTTCAA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTACGAGAGTGGATATTTaGCCAACAAAACTCACAGTA +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFTRVDI*PTKLTV
Trigger: TACTGTGAGTTTTGTTGGGCAAATATCCACTCTCGT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTTGAAAGAGGAGGAATaGATAGCCTTTTGGTGGAAA +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLKEEE*IAFWWK
Trigger: TTTCCACCAAAAGGCTATGCATTCCTCCTCTTTCAA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTTACTTTCTGCTTTGTaGGGCCAATCTACTACCAAA +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLLSAL*GQSTTK
Trigger: TTTGGTAGTAGATTGGCCCCACAAAGCAGAAAGTAA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGAATGCATAGCCTTTTaGTGGAAAATAGGATTTACT +
Preference number: 4 (lower is better)
Translates to: YYITAHELEPHITKLHRDECIAF*WKIGFT
Trigger: AGTAAATCCTATTTTCCACCAAAAGGCTATGCATTC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTGCATAGCCTTTTGGTaGAAAATAGGATTTACTTTC +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFCIAFW*KIGFTF
Trigger: GAAAGTAAATCCTATTTTCCACCAAAAGGCTATGCA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGAATGCATAGCCTTTTaGTGGAAAATAGGATTTACT +
Preference number: 4 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFECIAF*WKIGFT
Trigger: AGTAAATCCTATTTTCCACCAAAAGGCTATGCATTC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR GCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGAATTTTCCAGAGAGTaGATATTCAAGCTATCATAC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSEFSRE*IFKLSY
Trigger: GTATGATAGCTTGAATATGCACTCTCTGGAAAATTC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CCA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTGCATAGCCTTTTGGTaGAAAATAGGATTTACTTTC +
Preference number: 4 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSCIAFW*KIGFTF
Trigger: GAAAGTAAATCCTATTTTCCACCAAAAGGCTATGCA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp GGTGGTGGCGGCGTTGGCGGTGTTGGGCTGAAGCGGCCGGGGCAGTaGAGCGGCGGCGGCGGCGGCGGCGGCTTCGCGTCCGGAGGGTGG +
Preference number: 5 (lower is better)
Translates to: GGGGVGGVGLKRPGQ*SGGGGGGGFASGGW
Trigger: CCACCCTCCGGACGCGAAGCCGCCGCCGCCGCCGCCGCCGCTCCACTGCCCCGGCCGCTTCAGCCCAACACCGCCAACGCCGCCACCACC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp GAGCGGCGCCGACTGCAGGAGCGGCCCGGGCGGTGGTGGCGGCGTTaGCGGTGTTGGGCTGAAGCGGCCGGGGCAGTGGAGCGGCGGCGG +
Preference number: 5 (lower is better)
Translates to: ERRRLQERPGRWWRR*RCWAEAAGAVERRR
Trigger: CCGCCGCCGCTCCACTGCCCCGGCCGCTTCAGCCCAACACCGCCAACGCCGCCACCACCGCCCGGGCCGCTCCTGCAGTCGGCGCCGCTC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp GCCCGGGGTAGAAGCCGTTCTCCGAGTCCGGGCTGGGCGGCGGCATaGCGCTCAGAGAGCCGCCCGCGCCGCCGCCGCTGCCCGGGGTGG +
Preference number: 5 (lower is better)
Translates to: ARGRSRSPSPGWAAA*RSESRPRRRRCPGW
Trigger: CCACCCCGGGCAGCGGCGGCGGCGCGGGCGGCTCTCTGAGCGCCATGCCGCCGCCCAGCCCGGACTCGGAGAACGGCTTCTACCCCGGGC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp GGCGAGGGCGGGAGCTGCGGGAGCTGGGGCAGGTCGACCGGGCGCTaGCGCTGGGCGAAGTCCTGCGGCGGGAGGTGCTGCGTGTGCGGG +
Preference number: 5 (lower is better)
Translates to: GEGGSCGSWGRSTGR*RWAKSCGGRCCVCG
Trigger: CCCGCACACGCAGCACCTCCCGCCGCAGGACTTCGCCCAGCGGCAGCGCCCGGTCGACCTGCCCCAGCTCCCGCAGCTCCCGCCCTCGCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp GGAGGTGGGTCACACCCGCGTTCGTGCCGCCGCCGGGGTGGTGGCTaGGGAGCTGCTCTGCGGCCGCCGCCCCCGAGAGCGGCCTCGTCG +
Preference number: 5 (lower is better)
Translates to: GGGSHPRSCRRRGGG*GAALRPPPPRAASS
Trigger: CGACGAGGCCGCTCTCGGGGGCGGCGGCCGCAGAGCAGCTCCCCAGCCACCACCCCGGCGGCGGCACGAACGCGGGTGTGACCCACCTCC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 90 bp CGCCCGAGGGGATGGCGAAGGGGGAGGCGGCCTCGGAGAAGCCGGTaGCAGGCAACGGCGGCGGCGACAGCGGGCCGAAGGGCGTGGCGG +
Preference number: 5 (lower is better)
Translates to: RPRGWRRGRRPRRSR*QATAAATAGRRAWR
Trigger: CCGCCACGCCCTTCGGCCCGCTGTCGCCGCCGCCGTTGCCTGTCACCGGCTTCTCCGAGGCCGCCTCCCCCTTCGCCATCCCCTCGGGCG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp GGCGGGAGCTGCGGGAGCTGGGGCAGGTCGACCGGGCGCTGCCGCTaGGCGAAGTCCTGCGGCGGGAGGTGCTGCGTGTGCGGGAGGCTG +
Preference number: 5 (lower is better)
Translates to: GGSCGSWGRSTGRCR*AKSCGGRCCVCGRL
Trigger: CAGCCTCCCGCACACGCAGCACCTCCCGCCGCAGGACTTCGCCCAGCGGCAGCGCCCGGTCGACCTGCCCCAGCTCCCGCAGCTCCCGCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp TGGACGATGGCAGCCCGGGGTAGAAGCCGTTCTCCGAGTCCGGGCTaGGCGGCGGCATGGCGCTCAGAGAGCCGCCCGCGCCGCCGCCGC +
Preference number: 5 (lower is better)
Translates to: WTMAARGRSRSPSPG*AAAWRSESRPRRRR
Trigger: GCGGCGGCGGCGCGGGCGGCTCTCTGAGCGCCATGCCGCCGCCCAGCCCGGACTCGGAGAACGGCTTCTACCCCGGGCTGCCATCGTCCA
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 90 bp GCTGGGCGAAGTCCTGCGGCGGGAGGTGCTGCGTGTGCGGGAGGCTaGACGGCTGAGAGCGCTGGGCGAGCGGCGCCGACTGCAGGAGCG +
Preference number: 5 (lower is better)
Translates to: AGRSPAAGGAACAGG*TAESAGRAAPTAGA
Trigger: CGCTCCTGCAGTCGGCGCCGCTCGCCCAGCGCTCTCAGCCGTTCAGCCTCCCGCACACGCAGCACCTCCCGCCGCAGGACTTCGCCCAGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp AGGGCCGGTAGGCGCTGCCGCCGGGCGAGGATCGTGGGCTGCCGCTaGGCAGCAGGGCAGTGTGCAGCACCCCGAACCCGAAGTCCCGCA +
Preference number: 5 (lower is better)
Translates to: RAGRRCRRARIVGCR*AAGQCAAPRTRSPA
Trigger: TGCGGGACTTCGGGTTCGGGGTGCTGCACACTGCCCTGCTGCGCAGCGGCAGCCCACGATCCTCGCCCGGCGGCAGCGCCTACCGGCCCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp GCGGCTGCTGTTGAGGTAAATTCATGGCGGGCGGCGCGGGCACCGTaGGAGCAGAGAACGGGCCGCCGAAGCCGCCGCCGCCGCCGCCAC +
Preference number: 5 (lower is better)
Translates to: AAAVEVNSWRAARAP*EQRTGRRSRRRRRH
Trigger: GTGGCGGCGGCGGCGGCGGCTTCGGCGGCCCGTTCTCTGCTCCCACGGTGCCCGCGCCGCCCGCCATGAATTTACCTCAACAGCAGCCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp GGGAGCTGCTCTGCGGCCGCCGCCCCCGAGAGCGGCCTCGTCGGCTaGTGTGTCAGCCCGAGCAGTAGCTCATCCTGCACGGCCTGGGGA +
Preference number: 5 (lower is better)
Translates to: GSCSAAAAPESGLVG*CVSPSSSSSCTAWG
Trigger: TCCCCAGGCCGTGCAGGATGAGCTACTGCTCGGGCTGACACAGCAGCCGACGAGGCCGCTCTCGGGGGCGGCGGCCGCAGAGCAGCTCCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp CGGCGGCGGCGGCGGCGGCTTCGCGTCCGGAGGGTGGGGACGGTGTaGCGGGCTCAACTCTTTCCTCTTCTGGCTGCTCAGCTGCTGCTG +
Preference number: 5 (lower is better)
Translates to: RRRRRRLRVRRVGTV*RAQLFPLLAAQLLL
Trigger: CAGCAGCAGCTGAGCAGCCAGAAGAGGAAAGAGTTGAGCCCGCCACACCGTCCCCACCCTCCGGACGCGAAGCCGCCGCCGCCGCCGCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp TTCCTCTGCTGCAGGAAGGCGGCTGCGGCAGCCTGGTGCTGCTGCTaGAGCTGCGGGCTGACGGGTGACCTCCGGCTCTGCGGCTGCTGC +
Preference number: 5 (lower is better)
Translates to: FLCCRKAAAAAWCCC*SCGLTGDLRLCGCC
Trigger: GCAGCAGCCGCAGAGCCGGAGGTCACCCGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGCTGCCGCAGCCGCCTTCCTGCAGCAGAGGAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp TACGAGTTCCTCTGCTGCAGGAAGGCGGCTGCGGCAGCCTGGTGCTaGTGCTGCAGCTGCGGGCTGACGGGTGACCTCCGGCTCTGCGGC +
Preference number: 5 (lower is better)
Translates to: YEFLCCRKAAAAAWC*CCSCGLTGDLRLCG
Trigger: GCCGCAGAGCCGGAGGTCACCCGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGCTGCCGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp GAGGCGGAGGAGGAGGAGGGGTGGTGCAGACTCGGTTTGAAGTCCTaGGAGGGGAGGAGGTGGGTCACACCCGCGTTCGTGCCGCCGCCG +
Preference number: 5 (lower is better)
Translates to: EAEEEEGWCRLGLKS*EGRRWVTPAFVPPP
Trigger: CGGCGGCGGCACGAACGCGGGTGTGACCCACCTCCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACCACCCCTCCTCCTCCTCCGCCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp CGTGCGGCGACACCGGCGAGAAGCTCGGGAAGAAGGCCGGGTTCATaGACGATGGCAGCCCGGGGTAGAAGCCGTTCTCCGAGTCCGGGC +
Preference number: 5 (lower is better)
Translates to: RAATPARSSGRRPGS*TMAARGRSRSPSPG
Trigger: GCCCGGACTCGGAGAACGGCTTCTACCCCGGGCTGCCATCGTCCATGAACCCGGCCTTCTTCCCGAGCTTCTCGCCGGTGTCGCCGCACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp TGCTGTGTCAGCCCGAGCAGTAGCTCATCCTGCACGGCCTGGGGATaGGCCACGAGCGGGGAGGAAGAGGAAGCTGCGGCTGAGCTGGCC +
Preference number: 5 (lower is better)
Translates to: CCVSPSSSSSCTAWG*ATSGEEEEAAAELA
Trigger: GGCCAGCTCAGCCGCAGCTTCCTCTTCCTCCCCGCTCGTGGCGCATCCCCAGGCCGTGCAGGATGAGCTACTGCTCGGGCTGACACAGCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp AGCGGCCTCGTCGGCTGCTGTGTCAGCCCGAGCAGTAGCTCATCCTaGACGGCCTGGGGATGCGCCACGAGCGGGGAGGAAGAGGAAGCT +
Preference number: 5 (lower is better)
Translates to: SGLVGCCVSPSSSSS*TAWGCATSGEEEEA
Trigger: AGCTTCCTCTTCCTCCCCGCTCGTGGCGCATCCCCAGGCCGTGCAGGATGAGCTACTGCTCGGGCTGACACAGCAGCCGACGAGGCCGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp GTCGGCTGCTGTGTCAGCCCGAGCAGTAGCTCATCCTGCACGGCCTaGGGATGCGCCACGAGCGGGGAGGAAGAGGAAGCTGCGGCTGAG +
Preference number: 5 (lower is better)
Translates to: VGCCVSPSSSSSCTA*GCATSGEEEEAAAE
Trigger: CTCAGCCGCAGCTTCCTCTTCCTCCCCGCTCGTGGCGCATCCCCAGGCCGTGCAGGATGAGCTACTGCTCGGGCTGACACAGCAGCCGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp TGGTTGTACGAGTTCCTCTGCTGCAGGAAGGCGGCTGCGGCAGCCTaGTGCTGCTGCTGCAGCTGCGGGCTGACGGGTGACCTCCGGCTC +
Preference number: 5 (lower is better)
Translates to: WLYEFLCCRKAAAAA*CCCCSCGLTGDLRL
Trigger: GAGCCGGAGGTCACCCGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGCTGCCGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTACAACCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 90 bp AGCAGGAGGAGGCGGAGGAGGAGGAGGGGTGGTGCAGACTCGGTTTaGAGTCCTGGGAGGGGAGGAGGTGGGTCACACCCGCGTTCGTGC +
Preference number: 5 (lower is better)
Translates to: SRRRRRRRRGGADSV*SPGRGGGGSHPRSC
Trigger: GCACGAACGCGGGTGTGACCCACCTCCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACCACCCCTCCTCCTCCTCCGCCTCCTCCTGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp GGCGGGCTCAACTCTTTCCTCTTCTGGCTGCTCAGCTGCTGCTGCTaGCGCTTACTGAAGTCCTGCGGGGAGGAGGTGCGGCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: GGLNSFLFWLLSCCC*RLLKSCGEEVRQQQ
Trigger: CTGCTGCTGCCGCACCTCCTCCCCGCAGGACTTCAGTAAGCGGCAGCAGCAGCAGCTGAGCAGCCAGAAGAGGAAAGAGTTGAGCCCGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp CGGTGTGGCGGGCTCAACTCTTTCCTCTTCTGGCTGCTCAGCTGCTaGTGCTGCCGCTTACTGAAGTCCTGCGGGGAGGAGGTGCGGCAG +
Preference number: 5 (lower is better)
Translates to: RCGGLNSFLFWLLSC*CCRLLKSCGEEVRQ
Trigger: CTGCCGCACCTCCTCCCCGCAGGACTTCAGTAAGCGGCAGCAGCAGCAGCTGAGCAGCCAGAAGAGGAAAGAGTTGAGCCCGCCACACCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp TGTGGCGGGCTCAACTCTTTCCTCTTCTGGCTGCTCAGCTGCTGCTaGTGCCGCTTACTGAAGTCCTGCGGGGAGGAGGTGCGGCAGCAG +
Preference number: 5 (lower is better)
Translates to: CGGLNSFLFWLLSCC*CRLLKSCGEEVRQQ
Trigger: CTGCTGCCGCACCTCCTCCCCGCAGGACTTCAGTAAGCGGCAGCAGCAGCAGCTGAGCAGCCAGAAGAGGAAAGAGTTGAGCCCGCCACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp GGAGACTGTTTCAGAAGAGGCTGGTGGTGGTTGTACGAGTTCCTCTaGTGCAGGAAGGCGGCTGCGGCAGCCTGGTGCTGCTGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: GDCFRRGWWWLYEFL*CRKAAAAAWCCCCS
Trigger: GCTGCAGCAGCAGCACCAGGCTGCCGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTACAACCACCACCAGCCTCTTCTGAAACAGTCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp TGCCGCTCCTGCGGTGATCTCTGCCGTGCATTGCTCCCCAGGACATaGTCGCAGTGCCCCAACCGCTGTTCTGATGGTTGCTCCAAGGAG +
Preference number: 5 (lower is better)
Translates to: CRSCGDLCRALLPRT*SQCPNRCSDGCSKE
Trigger: CTCCTTGGAGCAACCATCAGAACAGCGGTTGGGGCACTGCGAGCATGTCCTGGGGAGCAATGCACGGCAGAGATCACCGCAGGAGCGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTTGAGCAGAGGGTGGTaGGGCGACTCCATGGAGCCC +
Preference number: 5 (lower is better)
Translates to: APETLEGHGEEEVGIRTNLSRGW*GDSMEP
Trigger: GGGCTCCATGGAGTCGCCCAACCACCCTCTGCTCAA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 90 bp TGCATTGCTCCCCAGGACATGCTCGCAGTGCCCCAACCGCTGTTCTaGTGGTTGCTCCAAGGAGACTGTTTCAGAAGAGGCTGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: CIAPQDMLAVPQPLF*WLLQGDCFRRGWWW
Trigger: CCACCACCAGCCTCTTCTGAAACAGTCTCCTTGGAGCAACCATCAGAACAGCGGTTGGGGCACTGCGAGCATGTCCTGGGGAGCAATGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp CTCCCCAGGACATGCTCGCAGTGCCCCAACCGCTGTTCTGATGGTTaGTCCAAGGAGACTGTTTCAGAAGAGGCTGGTGGTGGTTGTACG +
Preference number: 5 (lower is better)
Translates to: LPRTCSQCPNRCSDG*SKETVSEEAGGGCT
Trigger: CGTACAACCACCACCAGCCTCTTCTGAAACAGTCTCCTTGGAGCAACCATCAGAACAGCGGTTGGGGCACTGCGAGCATGTCCTGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 90 bp TGCGGTGATCTCTGCCGTGCATTGCTCCCCAGGACATGCTCGCAGTaGCCCAACCGCTGTTCTGATGGTTGCTCCAAGGAGACTGTTTCA +
Preference number: 5 (lower is better)
Translates to: CGDLCRALLPRTCSQ*PNRCSDGCSKETVS
Trigger: TGAAACAGTCTCCTTGGAGCAACCATCAGAACAGCGGTTGGGGCACTGCGAGCATGTCCTGGGGAGCAATGCACGGCAGAGATCACCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp ACCCGAGAACGGCTTCTTCAGCGGAGATATCTGATTCATAGTCCCTaGGATCCCCATGTTGCCGCTCCTGCGGTGATCTCTGCCGTGCAT +
Preference number: 5 (lower is better)
Translates to: TRERLLQRRYLIHSP*DPHVAAPAVISAVH
Trigger: ATGCACGGCAGAGATCACCGCAGGAGCGGCAACATGGGGATCCCAGGGACTATGAATCAGATATCTCCGCTGAAGAAGCCGTTCTCGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGATTTACTTTCTGCTTaGTGGGGCCAATCTACTACC +
Preference number: 5 (lower is better)
Translates to: APETLEGHGEEEVGIRTNDLLSA*WGQSTT
Trigger: GGTAGTAGATTGGCCCCACAAAGCAGAAAGTAAATC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATCACGAGAGTGGATATTaGCCCAACAAAACTCACAGT +
Preference number: 5 (lower is better)
Translates to: APETLEGHGEEEVGIRTNHESGY*PNKTHS
Trigger: ACTGTGAGTTTTGTTGGGCAAATATCCACTCTCGTG...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 90 bp TCCTGGTCTATTCTGGATGTTCCGGCTGCAGTGCACCAACTATCTTaGAGTGAATCTGAGCCCCAAGCTGGCAACTGCAAACTAGATCTC +
Preference number: 5 (lower is better)
Translates to: SWSILDVPAAVHQLS*SESEPQAGNCKLDL
Trigger: GAGATCTAGTTTGCAGTTGCCAGCTTGGGGCTCAGATTCACTCCAAGATAGTTGGTGCACTGCAGCCGGAACATCCAGAATAGACCAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS GCA 90 bp ACATTCTACTTCGATCCTGGTCTATTCTGGATGTTCCGGCTGCAGTaGACCAACTATCTTGGAGTGAATCTGAGCCCCAAGCTGGCAACT +
Preference number: 5 (lower is better)
Translates to: TFYFDPGLFWMFRLQ*TNYLGVNLSPKLAT
Trigger: AGTTGCCAGCTTGGGGCTCAGATTCACTCCAAGATAGTTGGTGCACTGCAGCCGGAACATCCAGAATAGACCAGGATCGAAGTAGAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATTTTAACATTAACAGATaGTCGGTTCCTGGATGTGGA +
Preference number: 5 (lower is better)
Translates to: APETLEGHGEEEVGIRTNFNINR*SVPGCG
Trigger: TCCACATCCAGGAACCGACAATCTGTTAATGTTAAA...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp GCTCCAGAAACTCTGGAGGGCCACGGGGAGGAAGAGGTTGGGATACGGACAAATGGAATGCATAGCCTTTaGGTGGAAAATAGGATTTAC +
Preference number: 5 (lower is better)
Translates to: APETLEGHGEEEVGIRTNGMHSL*VENRIY
Trigger: GTAAATCCTATTTTCCACCAAAAGGCTATGCATTCC...ATTTGTCCGTATCCCAACCTCTTCCTCCCCGTGGCCCTCCAGAGTTTCTGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTGGTGCAGACTCGGTTaGAAGTCCTGGGAGGGGAGG +
Preference number: 5 (lower is better)
Translates to: YYITAHELEPHITKLHRDWCRLG*KSWEGR
Trigger: CCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACCA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGATCTCTGCCGTGCATaGCTCCCCAGGACATGCTCG +
Preference number: 5 (lower is better)
Translates to: YYITAHELEPHITKLHRDDLCRA*LPRTCS
Trigger: CGAGCATGTCCTGGGGAGCAATGCACGGCAGAGATC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTGGTGCAGACTCGGTTaGAAGTCCTGGGAGGGGAGG +
Preference number: 5 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFWCRLG*KSWEGR
Trigger: CCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACCA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTTGAGCAGAGGGTGGTaGGGCGACTCCATGGAGCCC +
Preference number: 5 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSLSRGW*GDSMEP
Trigger: GGGCTCCATGGAGTCGCCCAACCACCCTCTGCTCAA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGATCTCTGCCGTGCATaGCTCCCCAGGACATGCTCG +
Preference number: 5 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFDLCRA*LPRTCS
Trigger: CGAGCATGTCCTGGGGAGCAATGCACGGCAGAGATC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTGCAGGCAGGTGACATaGGCACAGAAAAAGGGGGCA +
Preference number: 5 (lower is better)
Translates to: YYITAHELEPHITKLHRDCRQVT*AQKKGA
Trigger: TGCCCCCTTTTTCTGTGCCAATGTCACCTGCCTGCA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTAGAGGCTGGTGGTGGTaGTACGAGTTCCTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSRGWWW*YEFLCC
Trigger: GCAGCAGAGGAACTCGTACAACCACCACCAGCCTCT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTTGCAGGCAGGTGACATaGGCACAGAAAAAGGGGGCA +
Preference number: 5 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSCRQVT*AQKKGA
Trigger: TGCCCCCTTTTTCTGTGCCAATGTCACCTGCCTGCA...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 90 bp ATCTCACCTGTAAGGGTAAGAGTGTGTTACTATTGTTGTCTGTCCTaGACACATTATCTTCAATCCAAGATTTTGGAGTCAGTGATGGAG +
Preference number: 5 (lower is better)
Translates to: ISPVRVRVCYYCCLS*THYLQSKILESVME
Trigger: CTCCATCACTGACTCCAAAATCTTGGATTGAAGATAATGTGTTCAGGACAGACAACAATAGTAACACACTCTTACCCTTACAGGTGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS TCA 90 bp TTCGATCCTGTAAGGGTAAGAGTGTGTTACTATTGTTGTCTGTCCTaGACACATTATCTTCAATCCAAGATTTTGGAGTCAGTGATGGAG +
Preference number: 5 (lower is better)
Translates to: FDPVRVRVCYYCCLS*THYLQSKILESVME
Trigger: CTCCATCACTGACTCCAAAATCTTGGATTGAAGATAATGTGTTCAGGACAGACAACAATAGTAACACACTCTTACCCTTACAGGATCGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114066.3
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGATTTACTTTCTGCTTaGTGGGGCCAATCTACTACC +
Preference number: 5 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFDLLSA*WGQSTT
Trigger: GGTAGTAGATTGGCCCCACAAAGCAGAAAGTAAATC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTCACGAGAGTGGATATTaGCCCAACAAAACTCACAGT +
Preference number: 5 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFHESGY*PNKTHS
Trigger: ACTGTGAGTTTTGTTGGGCAAATATCCACTCTCGTG...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTTTAACATTAACAGATaGTCGGTTCCTGGATGTGGA +
Preference number: 5 (lower is better)
Translates to: YYITAHELEPHITKLHRDFNINR*SVPGCG
Trigger: TCCACATCCAGGAACCGACAATCTGTTAATGTTAAA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTACAAGCTATCATCTATaGGAAATAGGGAAGAGCGAC +
Preference number: 5 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFTSYHL*EIGKSD
Trigger: GTCGCTCTTCCCTATTTCCAATAGATGATAGCTTGT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTGATTTACTTTCTGCTTaGTGGGGCCAATCTACTACC +
Preference number: 5 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSDLLSA*WGQSTT
Trigger: GGTAGTAGATTGGCCCCACAAAGCAGAAAGTAAATC...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATGGAATGCATAGCCTTTaGGTGGAAAATAGGATTTAC +
Preference number: 5 (lower is better)
Translates to: YYITAHELEPHITKLHRDGMHSL*VENRIY
Trigger: GTAAATCCTATTTTCCACCAAAAGGCTATGCATTCC...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTTTAACATTAACAGATaGTCGGTTCCTGGATGTGGA +
Preference number: 5 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFFNINR*SVPGCG
Trigger: TCCACATCCAGGAACCGACAATCTGTTAATGTTAAA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTACAAGCTATCATCTATaGGAAATAGGGAAGAGCGAC +
Preference number: 5 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSTSYHL*EIGKSD
Trigger: GTCGCTCTTCCCTATTTCCAATAGATGATAGCTTGT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTGGAATGCATAGCCTTTaGGTGGAAAATAGGATTTAC +
Preference number: 5 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFGMHSL*VENRIY
Trigger: GTAAATCCTATTTTCCACCAAAAGGCTATGCATTCC...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TACTATATCACTGCACATGAATTAGAACCGCACATCACAAAATTGCACAGGGATTTCGCCCATAACTCCTaGCATTTAACATTAACAGAT +
Preference number: 5 (lower is better)
Translates to: YYITAHELEPHITKLHRDFAHNS*HLTLTD
Trigger: ATCTGTTAATGTTAAATGCAAGGAGTTATGGGCGAA...ATCCCTGTGCAATTTTGTGATGTGCGGTTCTAATTCATGTGCAGTGATATAGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTAGTGTGTTACTATTGTaGTCTGTCCTGAACACATTA +
Preference number: 5 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFSVLLL*SVLNTL
Trigger: TAATGTGTTCAGGACAGACAACAATAGTAACACACT...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp CACAACACAGAATCGAGGTTAGTCAGCCTTCCAAAATGTGTTATATTCAAGTTTTTCGCCCATAACTCCTaGCATTTAACATTAACAGAT +
Preference number: 5 (lower is better)
Translates to: HNTESRLVSLPKCVIFKFFAHNS*HLTLTD
Trigger: ATCTGTTAATGTTAAATGCAAGGAGTTATGGGCGAA...AAACTTGAATATAACACATTTTGGAAGGCTGACTAACCTCGATTCTGTGTTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS-3UTR CAA 90 bp TCCCATCTCCATTTTGACTTCACTAAAGTTCTGTGTTCTTCTATAAAATCCTCTAGTGTGTTACTATTGTaGTCTGTCCTGAACACATTA +
Preference number: 5 (lower is better)
Translates to: SHLHFDFTKVLCSSIKSSSVLLL*SVLNTL
Trigger: TAATGTGTTCAGGACAGACAACAATAGTAACACACT...AGAGGATTTTATAGAAGAACACAGAACTTTAGTGAAGTCAAAATGGAGATGGGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp TCACACCCGCGTTCGTGCCGCCGCCGGGGTGGTGGCTaGGGAGCTGCTCTGCGGCCGCCGCCCCCGAGAGCG +
Preference number: 6 (lower is better)
Translates to: SHPRSCRRRGGG*GAALRPPPPRA
Trigger: CGCTCTCGGGGGCGGCGGCCGCAGAGCAGCTCCCCAGCCACCACCCCGGCGGCGGCACGAACGCGGGTGTGA
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp GAGCGGCGCCGACTGCAGGAGCGGCCCGGGCGGTGGTaGCGGCGTTGGCGGTGTTGGGCTGAAGCGGCCGGG +
Preference number: 6 (lower is better)
Translates to: ERRRLQERPGRW*RRWRCWAEAAG
Trigger: CCCGGCCGCTTCAGCCCAACACCGCCAACGCCGCCACCACCGCCCGGGCCGCTCCTGCAGTCGGCGCCGCTC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp GGCGAGCGGCGCCGACTGCAGGAGCGGCCCGGGCGGTaGTGGCGGCGTTGGCGGTGTTGGGCTGAAGCGGCC +
Preference number: 6 (lower is better)
Translates to: GERRRLQERPGR*WRRWRCWAEAA
Trigger: GGCCGCTTCAGCCCAACACCGCCAACGCCGCCACCACCGCCCGGGCCGCTCCTGCAGTCGGCGCCGCTCGCC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp GGGAGCTGCGGGAGCTGGGGCAGGTCGACCGGGCGCTaGCGCTGGGCGAAGTCCTGCGGCGGGAGGTGCTGC +
Preference number: 6 (lower is better)
Translates to: GSCGSWGRSTGR*RWAKSCGGRCC
Trigger: GCAGCACCTCCCGCCGCAGGACTTCGCCCAGCGGCAGCGCCCGGTCGACCTGCCCCAGCTCCCGCAGCTCCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp CCACCGCCGGCCGGCACGCTGAGCCCCGCGCAGCCGTaGGGCGACACCGGCGAGAAGCTCGGGAAGAAGGCC +
Preference number: 6 (lower is better)
Translates to: PPPAGTLSPAQP*GDTGEKLGKKA
Trigger: GGCCTTCTTCCCGAGCTTCTCGCCGGTGTCGCCGCACGGCTGCGCGGGGCTCAGCGTGCCGGCCGGCGGTGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp AGAAGCCGTTCTCCGAGTCCGGGCTGGGCGGCGGCATaGCGCTCAGAGAGCCGCCCGCGCCGCCGCCGCTGC +
Preference number: 6 (lower is better)
Translates to: RSRSPSPGWAAA*RSESRPRRRRC
Trigger: GCAGCGGCGGCGGCGCGGGCGGCTCTCTGAGCGCCATGCCGCCGCCCAGCCCGGACTCGGAGAACGGCTTCT
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp GCCGGTAGGCGCTGCCGCCGGGCGAGGATCGTGGGCTaGCGCTGCGCAGCAGGGCAGTGTGCAGCACCCCGA +
Preference number: 6 (lower is better)
Translates to: AGRRCRRARIVG*RCAAGQCAAPR
Trigger: TCGGGGTGCTGCACACTGCCCTGCTGCGCAGCGGCAGCCCACGATCCTCGCCCGGCGGCAGCGCCTACCGGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp CCACGAGCGGGGAGGAAGAGGAAGCTGCGGCTGAGCTaGCCGCGCCGCCGCCCGAGGGGATGGCGAAGGGGG +
Preference number: 6 (lower is better)
Translates to: PRAGRKRKLRLS*PRRRPRGWRRG
Trigger: CCCCCTTCGCCATCCCCTCGGGCGGCGGCGCGGCCAGCTCAGCCGCAGCTTCCTCTTCCTCCCCGCTCGTGG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp CGACTGCAGGAGCGGCCCGGGCGGTGGTGGCGGCGTTaGCGGTGTTGGGCTGAAGCGGCCGGGGCAGTGGAG +
Preference number: 6 (lower is better)
Translates to: RLQERPGRWWRR*RCWAEAAGAVE
Trigger: CTCCACTGCCCCGGCCGCTTCAGCCCAACACCGCCAACGCCGCCACCACCGCCCGGGCCGCTCCTGCAGTCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp TGCGGGAGCTGGGGCAGGTCGACCGGGCGCTGCCGCTaGGCGAAGTCCTGCGGCGGGAGGTGCTGCGTGTGC +
Preference number: 6 (lower is better)
Translates to: CGSWGRSTGRCR*AKSCGGRCCVC
Trigger: GCACACGCAGCACCTCCCGCCGCAGGACTTCGCCCAGCGGCAGCGCCCGGTCGACCTGCCCCAGCTCCCGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 72 bp GGATGGCGAAGGGGGAGGCGGCCTCGGAGAAGCCGGTaGCAGGCAACGGCGGCGGCGACAGCGGGCCGAAGG +
Preference number: 6 (lower is better)
Translates to: GWRRGRRPRRSR*QATAAATAGRR
Trigger: CCTTCGGCCCGCTGTCGCCGCCGCCGTTGCCTGTCACCGGCTTCTCCGAGGCCGCCTCCCCCTTCGCCATCC
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp GGCGGCGGCGGCGGCGGCGGCTTCGCGTCCGGAGGGTaGGGACGGTGTGGCGGGCTCAACTCTTTCCTCTTC +
Preference number: 6 (lower is better)
Translates to: GGGGGGGFASGG*GRCGGLNSFLF
Trigger: GAAGAGGAAAGAGTTGAGCCCGCCACACCGTCCCCACCCTCCGGACGCGAAGCCGCCGCCGCCGCCGCCGCC
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp TGCAGGAAGGCGGCTGCGGCAGCCTGGTGCTGCTGCTaGAGCTGCGGGCTGACGGGTGACCTCCGGCTCTGC +
Preference number: 6 (lower is better)
Translates to: CRKAAAAAWCCC*SCGLTGDLRLC
Trigger: GCAGAGCCGGAGGTCACCCGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGCTGCCGCAGCCGCCTTCCTGCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp CTCTGCTGCAGGAAGGCGGCTGCGGCAGCCTGGTGCTaGTGCTGCAGCTGCGGGCTGACGGGTGACCTCCGG +
Preference number: 6 (lower is better)
Translates to: LCCRKAAAAAWC*CCSCGLTGDLR
Trigger: CCGGAGGTCACCCGTCAGCCCGCAGCTGCAGCAGCAGCACCAGGCTGCCGCAGCCGCCTTCCTGCAGCAGAG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp GTTGAGGTAAATTCATGGCGGGCGGCGCGGGCACCGTaGGAGCAGAGAACGGGCCGCCGAAGCCGCCGCCGC +
Preference number: 6 (lower is better)
Translates to: VEVNSWRAARAP*EQRTGRRSRRR
Trigger: GCGGCGGCGGCTTCGGCGGCCCGTTCTCTGCTCCCACGGTGCCCGCGCCGCCCGCCATGAATTTACCTCAAC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp CGGCGGCGGCTTCGCGTCCGGAGGGTGGGGACGGTGTaGCGGGCTCAACTCTTTCCTCTTCTGGCTGCTCAG +
Preference number: 6 (lower is better)
Translates to: RRRLRVRRVGTV*RAQLFPLLAAQ
Trigger: CTGAGCAGCCAGAAGAGGAAAGAGTTGAGCCCGCCACACCGTCCCCACCCTCCGGACGCGAAGCCGCCGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp AGCCCGAGCAGTAGCTCATCCTGCACGGCCTGGGGATaGGCCACGAGCGGGGAGGAAGAGGAAGCTGCGGCT +
Preference number: 6 (lower is better)
Translates to: SPSSSSSCTAWG*ATSGEEEEAAA
Trigger: AGCCGCAGCTTCCTCTTCCTCCCCGCTCGTGGCGCATCCCCAGGCCGTGCAGGATGAGCTACTGCTCGGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp GTCGGCTGCTGTGTCAGCCCGAGCAGTAGCTCATCCTaGACGGCCTGGGGATGCGCCACGAGCGGGGAGGAA +
Preference number: 6 (lower is better)
Translates to: VGCCVSPSSSSS*TAWGCATSGEE
Trigger: TTCCTCCCCGCTCGTGGCGCATCCCCAGGCCGTGCAGGATGAGCTACTGCTCGGGCTGACACAGCAGCCGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp CAGCAGCAGGAGGAGGCGGAGGAGGAGGAGGGGTGGTaGAGACTCGGTTTGAAGTCCTGGGAGGGGAGGAGG +
Preference number: 6 (lower is better)
Translates to: QQQEEAEEEEGW*RLGLKSWEGRR
Trigger: CCTCCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACCACCCCTCCTCCTCCTCCGCCTCCTCCTGCTGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp CAGCAGCAGCAGGAGGAGGCGGAGGAGGAGGAGGGGTaGTGCAGACTCGGTTTGAAGTCCTGGGAGGGGAGG +
Preference number: 6 (lower is better)
Translates to: QQQQEEAEEEEG*CRLGLKSWEGR
Trigger: CCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACCACCCCTCCTCCTCCTCCGCCTCCTCCTGCTGCTGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 72 bp TCTTCTGGCTGCTCAGCTGCTGCTGCTGCCGCTTACTaGAGTCCTGCGGGGAGGAGGTGCGGCAGCAGCAGC +
Preference number: 6 (lower is better)
Translates to: SSGCSAAAAAAY*SPAGRRCGSSS
Trigger: GCTGCTGCTGCCGCACCTCCTCCCCGCAGGACTTCAGTAAGCGGCAGCAGCAGCAGCTGAGCAGCCAGAAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp TGTGTCAGCCCGAGCAGTAGCTCATCCTGCACGGCCTaGGGATGCGCCACGAGCGGGGAGGAAGAGGAAGCT +
Preference number: 6 (lower is better)
Translates to: CVSPSSSSSCTA*GCATSGEEEEA
Trigger: AGCTTCCTCTTCCTCCCCGCTCGTGGCGCATCCCCAGGCCGTGCAGGATGAGCTACTGCTCGGGCTGACACA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp GAGGAGGAGGGGTGGTGCAGACTCGGTTTGAAGTCCTaGGAGGGGAGGAGGTGGGTCACACCCGCGTTCGTG +
Preference number: 6 (lower is better)
Translates to: EEEGWCRLGLKS*EGRRWVTPAFV
Trigger: CACGAACGCGGGTGTGACCCACCTCCTCCCCTCCCAGGACTTCAAACCGAGTCTGCACCACCCCTCCTCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp ACACCGGCGAGAAGCTCGGGAAGAAGGCCGGGTTCATaGACGATGGCAGCCCGGGGTAGAAGCCGTTCTCCG +
Preference number: 6 (lower is better)
Translates to: TPARSSGRRPGS*TMAARGRSRSP
Trigger: CGGAGAACGGCTTCTACCCCGGGCTGCCATCGTCCATGAACCCGGCCTTCTTCCCGAGCTTCTCGCCGGTGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CAA 72 bp CCATGTTGCCGCTCCTGCGGTGATCTCTGCCGTGCATaGCTCCCCAGGACATGCTCGCAGTGCCCCAACCGC +
Preference number: 6 (lower is better)
Translates to: PCCRSCGDLCRA*LPRTCSQCPNR
Trigger: GCGGTTGGGGCACTGCGAGCATGTCCTGGGGAGCAATGCACGGCAGAGATCACCGCAGGAGCGGCAACATGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp AGAAGAGGCTGGTGGTGGTTGTACGAGTTCCTCTGCTaGAGGAAGGCGGCTGCGGCAGCCTGGTGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: RRGWWWLYEFLC*RKAAAAAWCCC
Trigger: GCAGCAGCACCAGGCTGCCGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTACAACCACCACCAGCCTCTTCT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp CATGTTGCCGCTCCTGCGGTGATCTCTGCCGTGCATTaGTCCCCAGGACATGCTCGCAGTGCCCCAACCGCT +
Preference number: 6 (lower is better)
Translates to: HVAAPAVISAVH*SPGHARSAPTA
Trigger: AGCGGTTGGGGCACTGCGAGCATGTCCTGGGGAGCAATGCACGGCAGAGATCACCGCAGGAGCGGCAACATG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp CTGGGATCCCCATGTTGCCGCTCCTGCGGTGATCTCTaGCGTGCATTGCTCCCCAGGACATGCTCGCAGTGC +
Preference number: 6 (lower is better)
Translates to: LGSPCCRSCGDL*RALLPRTCSQC
Trigger: GCACTGCGAGCATGTCCTGGGGAGCAATGCACGGCAGAGATCACCGCAGGAGCGGCAACATGGGGATCCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp TTCAGAAGAGGCTGGTGGTGGTTGTACGAGTTCCTCTaGTGCAGGAAGGCGGCTGCGGCAGCCTGGTGCTGC +
Preference number: 6 (lower is better)
Translates to: FRRGWWWLYEFL*CRKAAAAAWCC
Trigger: GCAGCACCAGGCTGCCGCAGCCGCCTTCCTGCAGCAGAGGAACTCGTACAACCACCACCAGCCTCTTCTGAA
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 72 bp ATAGTCCCTGGGATCCCCATGTTGCCGCTCCTGCGGTaGTCTCTGCCGTGCATTGCTCCCCAGGACATGCTC +
Preference number: 6 (lower is better)
Translates to: IVPGIPMLPLLR*SLPCIAPQDML
Trigger: GAGCATGTCCTGGGGAGCAATGCACGGCAGAGATCACCGCAGGAGCGGCAACATGGGGATCCCAGGGACTAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp CTCTGCCGTGCATTGCTCCCCAGGACATGCTCGCAGTaGCCCAACCGCTGTTCTGATGGTTGCTCCAAGGAG +
Preference number: 6 (lower is better)
Translates to: LCRALLPRTCSQ*PNRCSDGCSKE
Trigger: CTCCTTGGAGCAACCATCAGAACAGCGGTTGGGGCACTGCGAGCATGTCCTGGGGAGCAATGCACGGCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 72 bp CCCCAGGACATGCTCGCAGTGCCCCAACCGCTGTTCTaGTGGTTGCTCCAAGGAGACTGTTTCAGAAGAGGC +
Preference number: 6 (lower is better)
Translates to: PQDMLAVPQPLF*WLLQGDCFRRG
Trigger: GCCTCTTCTGAAACAGTCTCCTTGGAGCAACCATCAGAACAGCGGTTGGGGCACTGCGAGCATGTCCTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp ACATGCTCGCAGTGCCCCAACCGCTGTTCTGATGGTTaGTCCAAGGAGACTGTTTCAGAAGAGGCTGGTGGT +
Preference number: 6 (lower is better)
Translates to: TCSQCPNRCSDG*SKETVSEEAGG
Trigger: ACCACCAGCCTCTTCTGAAACAGTCTCCTTGGAGCAACCATCAGAACAGCGGTTGGGGCACTGCGAGCATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CCA 72 bp CGGCTTCTTCAGCGGAGATATCTGATTCATAGTCCCTaGGATCCCCATGTTGCCGCTCCTGCGGTGATCTCT +
Preference number: 6 (lower is better)
Translates to: RLLQRRYLIHSP*DPHVAAPAVIS
Trigger: AGAGATCACCGCAGGAGCGGCAACATGGGGATCCCAGGGACTATGAATCAGATATCTCCGCTGAAGAAGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS GCA 72 bp TTCGATCCTGGTCTATTCTGGATGTTCCGGCTGCAGTaGACCAACTATCTTGGAGTGAATCTGAGCCCCAAG +
Preference number: 6 (lower is better)
Translates to: FDPGLFWMFRLQ*TNYLGVNLSPK
Trigger: CTTGGGGCTCAGATTCACTCCAAGATAGTTGGTGCACTGCAGCCGGAACATCCAGAATAGACCAGGATCGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS CCA 72 bp ATTCTGGATGTTCCGGCTGCAGTGCACCAACTATCTTaGAGTGAATCTGAGCCCCAAGCTGGCAACTGCAAA +
Preference number: 6 (lower is better)
Translates to: ILDVPAAVHQLS*SESEPQAGNCK
Trigger: TTTGCAGTTGCCAGCTTGGGGCTCAGATTCACTCCAAGATAGTTGGTGCACTGCAGCCGGAACATCCAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS GCA 72 bp CTATCTTGGAGTGAATCTGAGCCCCAAGCTGGCAACTaGAAACTAGATCTCACCTGTAAGGGTAAGAGTGTG +
Preference number: 6 (lower is better)
Translates to: LSWSESEPQAGN*KLDLTCKGKSV
Trigger: CACACTCTTACCCTTACAGGTGAGATCTAGTTTGCAGTTGCCAGCTTGGGGCTCAGATTCACTCCAAGATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000114065.9
ENSMUST00000166713.9
CDS GCA 72 bp TGGATAGCTCAGACGACCCTTGAGAGGATCGTGCTCTaGTCTCATGATATCAATAAGGGAATTTTCCAGAGA +
Preference number: 6 (lower is better)
Translates to: WIAQTTLERIVL*SHDINKGIFQR
Trigger: TCTCTGGAAAATTCCCTTATTGATATCATGAGAGCAGAGCACGATCCTCTCAAGGGTCGTCTGAGCTATCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 72 bp GAACACATTATCTTCAATCCAAGATTTTGGAGTCAGTaGTGGAGTAGAGCGAGTGAATTTCGGTGGTGCTAT +
Preference number: 6 (lower is better)
Translates to: EHIIFNPRFWSQ*WSRASEFRWCY
Trigger: ATAGCACCACCGAAATTCACTCGCTCTACTCCATCACTGACTCCAAAATCTTGGATTGAAGATAATGTGTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS CAA 90 bp AGAAGCGTTCAATTCGTTCTCCATTTTGATGAGCTGAATAACATGTaGGTGAATTTAAAACACCAACTTGATCACTGTGACCATCATCCA +
Preference number: 6 (lower is better)
Translates to: RSVQFVLHFDELNNM*VNLKHQLDHCDHHP
Trigger: TGGATGATGGTCACAGTGATCAAGTTGGTGTTTTAAATTCACCAACATGTTATTCAGCTCATCAAAATGGAGAACGAATTGAACGCTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8
CDS TCA 72 bp GTAAGGGTAAGAGTGTGTTACTATTGTTGTCTGTCCTaGACACATTATCTTCAATCCAAGATTTTGGAGTCA +
Preference number: 6 (lower is better)
Translates to: VRVRVCYYCCLS*THYLQSKILES
Trigger: TGACTCCAAAATCTTGGATTGAAGATAATGTGTTCAGGACAGACAACAATAGTAACACACTCTTACCCTTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000114065.9
ENSMUST00000114066.3
ENSMUST00000166713.9
ENSMUST00000169035.8