Pregenerated sensors for CPE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037852Ensembl transcript IDs: ENSMUST00000048967.9
Found 97 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGATTCTCGCAGTACAGGGTTCACAGATCCAAGCTATATCGGTTaGCTTCTTCATGGCATCTGTCATGTGACATTGTCACCCATTACG | + |
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Preference number: 1 (lower is better) Translates to: CDSRSTGFTDPSYIG*LLHGICHVTLSPIT Trigger: CGTAATGGGTGACAATGTCACATGACAGATGCCATGAAGAAGTCAACCGATATAGCTTGGATCTGTGAACCCTGTACTGCGAGAATCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| 3UTR TCA 90 bp | AGTGAATCAGCACAAGAGACTAAGGACAACTTATATGGAACTATGTaGTTCTCGCAGTACAGGGTTCACAGATCCAAGCTATATCGGTTG | + |
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Preference number: 1 (lower is better) Translates to: SESAQETKDNLYGTM*FSQYRVHRSKLYRL Trigger: CAACCGATATAGCTTGGATCTGTGAACCCTGTACTGCGAGAATCACATAGTTCCATATAAGTTGTCCTTAGTCTCTTGTGCTGATTCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| 3UTR TCA 90 bp | TACAATCAAGACAAAACCCCAAACTCTGAAGTGGCATTAACAGGCTaGCTAATACAATTCCATTCTTCAAAGTACACGCAAGAACTAGGT | + |
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Preference number: 1 (lower is better) Translates to: YNQDKTPNSEVALTG*LIQFHSSKYTQELG Trigger: ACCTAGTTCTTGCGTGTACTTTGAAGAATGGAATTGTATTAGTCAGCCTGTTAATGCCACTTCAGAGTTTGGGGTTTTGTCTTGATTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| 3UTR GCA 90 bp | AAGCACGTACATTTTCTTCCCATCCAAAGTGCATTACCAGGATCATaGTTATACAGTGAATCAGCACAAGAGACTAAGGACAACTTATAT | + |
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Preference number: 1 (lower is better) Translates to: KHVHFLPIQSALPGS*LYSESAQETKDNLY Trigger: ATATAAGTTGTCCTTAGTCTCTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGATGGGAAGAAAATGTACGTGCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| 3UTR-3UTR TCA 90 bp | TCTTCAAAGTACACGCAAGAACTAGGTTTTCATTCTGTTCAGAGCCCCTCTGAAATGGCATCTGTCATGTaGCATTGTCACCCATTACGT | + |
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Preference number: 2 (lower is better) Translates to: SSKYTQELGFHSVQSPSEMASVM*HCHPLR Trigger: ACGTAATGGGTGACAATGTCACATGACAGATGCCAT...TTCAGAGGGGCTCTGAACAGAATGAAAACCTAGTTCTTGCGTGTACTTTGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| 3UTR-3UTR CCA 90 bp | GCTTATACAGTGAATCAGCACAAGAGACTAAGGACAACTTATATGGAACTATGTCGGTTGACTTCTTCATaGCATCTGTCATGTGACATT | + |
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Preference number: 2 (lower is better) Translates to: AYTVNQHKRLRTTYMELCRLTSS*HLSCDI Trigger: AATGTCACATGACAGATGCCATGAAGAAGTCAACCG...ACATAGTTCCATATAAGTTGTCCTTAGTCTCTTGTGCTGATTCACTGTATAAGC 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| 3UTR TCA 72 bp | CGCAGTACAGGGTTCACAGATCCAAGCTATATCGGTTaGCTTCTTCATGGCATCTGTCATGTGACATTGTCA | + |
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Preference number: 3 (lower is better) Translates to: RSTGFTDPSYIG*LLHGICHVTLS Trigger: TGACAATGTCACATGACAGATGCCATGAAGAAGTCAACCGATATAGCTTGGATCTGTGAACCCTGTACTGCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| 3UTR GCA 72 bp | CATTTTCTTCCCATCCAAAGTGCATTACCAGGATCATaGTTATACAGTGAATCAGCACAAGAGACTAAGGAC | + |
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Preference number: 3 (lower is better) Translates to: HFLPIQSALPGS*LYSESAQETKD Trigger: GTCCTTAGTCTCTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGATGGGAAGAAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| 3UTR-3UTR CAA 90 bp | TCTTCAAAGTACACGCAAGAACTAGGTTTTCATTCTGTTCAGAGCCCCTCTGAAAAGAAAAGAGCCACATaGCATCTTACTACAGTCTAT | + |
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Preference number: 3 (lower is better) Translates to: SSKYTQELGFHSVQSPSEKKRAT*HLTTVY Trigger: ATAGACTGTAGTAAGATGCAATGTGGCTCTTTTCTT...TTCAGAGGGGCTCTGAACAGAATGAAAACCTAGTTCTTGCGTGTACTTTGAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | TTCCCATCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGGGCGCCCCGGGCTCCTaGGCTTCAGCCGTCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: FPSKVHYQDHAYTVNQHKGAPGS*ASAVSS Trigger: GCTGCTGACGGCTGAAGCCCAGGAGCCCGGGGCGCC...CTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGATGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TCAACTGCACACAACCTAAAAGAAAAGAGCCACATTGCATCTTACTACAGTCTAGAGATGCCGTCCTCTTaGTGGAGCCGCCGGCGGCGC | + |
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Preference number: 4 (lower is better) Translates to: STAHNLKEKSHIASYYSLEMPSS*WSRRRR Trigger: GCGCCGCCGGCGGCTCCAGCAAGAGGACGGCATCTC...TAGACTGTAGTAAGATGCAATGTGGCTCTTTTCTTTTAGGTTGTGTGCAGTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TTCCCATCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGCCCGGCCCTCGAAGCTaGGCCCCACTGTGTAGATTC | + |
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Preference number: 4 (lower is better) Translates to: FPSKVHYQDHAYTVNQHKPGPRS*APLCRF Trigger: GAATCTACACAGTGGGGCGCAGCTTCGAGGGCCGGG...CTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGATGGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | AAGCTATATCGGTTGACTTCTTCATGGCATCTGTCATGTGACATTGTCACCCATCGCCTCGCGCAGCTCTaGATAGCGGTGGTACTCGAA | + |
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Preference number: 4 (lower is better) Translates to: KLYRLTSSWHLSCDIVTHRLAQL*IAVVLE Trigger: TTCGAGTACCACCGCTATCCAGAGCTGCGCGAGGCG...ATGGGTGACAATGTCACATGACAGATGCCATGAAGAAGTCAACCGATATAGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR TCA 90 bp | TCTTCAAAGTACACGCAAGAACTAGGTTTTCATTCTGTTCAGAGCCCCTCTGAACTGTGTAGATTCTGCTaGTGGCGGTGCACTGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SSKYTQELGFHSVQSPSELCRFC*WRCTAA Trigger: GGCTGCAGTGCACCGCCATCAGCAGAATCTACACAG...TTCAGAGGGGCTCTGAACAGAATGAAAACCTAGTTCTTGCGTGTACTTTGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | AAGCTATATCGGTTGACTTCTTCATGGCATCTGTCATGTGACATTGTCACCCATTCCCGTCCACAGAGATaGTTGCGTTGGCAATCGGGT | + |
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Preference number: 4 (lower is better) Translates to: KLYRLTSSWHLSCDIVTHSRPQR*LRWQSG Trigger: ACCCGATTGCCAACGCAACCATCTCTGTGGACGGGA...ATGGGTGACAATGTCACATGACAGATGCCATGAAGAAGTCAACCGATATAGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TTTATTCATCAGAATGCAATTCTGGGCCAATCTACAATCAAGACAAAACCCCAACTGATGGCGGTGCACTaGAGCCATACGGACACCAGC | + |
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Preference number: 4 (lower is better) Translates to: FIHQNAILGQSTIKTKPQLMAVH*SHTDTS Trigger: GCTGGTGTCCGTATGGCTGCAGTGCACCGCCATCAG...TTGGGGTTTTGTCTTGATTGTAGATTGGCCCAGAATTGCATTCTGATGAATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | AGGCTGACTAATACAATTCCATTCTTCAAAGTACACGCAAGAACTAGGTTTTCATTCCCTGGGCGTTGCTaGGGCCCACAAACCAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: RLTNTIPFFKVHARTRFSFPGRC*GPQTSP Trigger: AGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAA...TGAAAACCTAGTTCTTGCGTGTACTTTGAAGAATGGAATTGTATTAGTCAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TCAACTGCACACAACCTAAAAGAAAAGAGCCACATTGCATCTTACTACAGTCTACTATTCCCTGGGCGTTaGTGCGGCCCACAAACCAGT | + |
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Preference number: 4 (lower is better) Translates to: STAHNLKEKSHIASYYSLLFPGR*CGPQTS Trigger: ACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAG...TAGACTGTAGTAAGATGCAATGTGGCTCTTTTCTTTTAGGTTGTGTGCAGTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR TCA 90 bp | AAGCTATATCGGTTGACTTCTTCATGGCATCTGTCATGTGACATTGTCACCCATGGTTCAAGGAGGGCATaGTATGAATTCGGGTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: KLYRLTSSWHLSCDIVTHGSRRA*YEFGCC Trigger: ACAGCACCCGAATTCATATCATGCCCTCCTTGAACC...ATGGGTGACAATGTCACATGACAGATGCCATGAAGAAGTCAACCGATATAGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR TCA 90 bp | TCTTCAAAGTACACGCAAGAACTAGGTTTTCATTCTGTTCAGAGCCCCTCTGAAATGTCCATGATCCAGTaGATGACAGCCTTGGTCTCG | + |
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Preference number: 4 (lower is better) Translates to: SSKYTQELGFHSVQSPSEMSMIQ*MTALVS Trigger: CGAGACCAAGGCTGTCATTCACTGGATCATGGACAT...TTCAGAGGGGCTCTGAACAGAATGAAAACCTAGTTCTTGCGTGTACTTTGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TTTATTCATCAGAATGCAATTCTGGGCCAATCTACAATCAAGACAAAACCCCAAGGTACTCGAAGGAGATaGCGTCCTCTTGCTGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: FIHQNAILGQSTIKTKPQGTRRR*RPLAGA Trigger: GGCTCCAGCAAGAGGACGGCATCTCCTTCGAGTACC...TTGGGGTTTTGTCTTGATTGTAGATTGGCCCAGAATTGCATTCTGATGAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TTTATTCATCAGAATGCAATTCTGGGCCAATCTACAATCAAGACAAAACCCCAAGGGGACGCTGTACCATaGACCACCATTGGTCGTTCC | + |
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Preference number: 4 (lower is better) Translates to: FIHQNAILGQSTIKTKPQGDAVP*TTIGRS Trigger: GGAACGACCAATGGTGGTGCATGGTACAGCGTCCCC...TTGGGGTTTTGTCTTGATTGTAGATTGGCCCAGAATTGCATTCTGATGAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGAGACTAACAAGGTCTCCTCCGTaGAGATTGGCAGAAAGCACA | + |
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Preference number: 4 (lower is better) Translates to: SKVHYQDHAYTVNQHKRLTRSPP*RLAEST Trigger: TGTGCTTTCTGCCAATCTGCACGGAGGAGACCTTGT...TAGTCTCTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGAGACTACACTTTCTTTGTGATTaGCAGGTAGCCAGGAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: SKVHYQDHAYTVNQHKRLHFLCD*QVARSG Trigger: TCCGCTCCTGGCTACCTGGCAATCACAAAGAAAGTG...TAGTCTCTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | TTTATTCATCAGAATGCAATTCTGGGCCAATCTACAATCAAGACAAAACCCCAATTCAGATCTATTCCCTaGGCGTTGCTGCGGCCCACA | + |
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Preference number: 4 (lower is better) Translates to: FIHQNAILGQSTIKTKPQFRSIP*ALLRPT Trigger: TGTGGGCCGCAGCAACGCCCAGGGAATAGATCTGAA...TTGGGGTTTTGTCTTGATTGTAGATTGGCCCAGAATTGCATTCTGATGAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | TCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGAGACTAGATCCTGTCCAGGTCTaGGAAGTTACGGTTCAGATC | + |
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Preference number: 4 (lower is better) Translates to: SKVHYQDHAYTVNQHKRLDPVQV*EVTVQI Trigger: GATCTGAACCGTAACTTCCCAGACCTGGACAGGATC...TAGTCTCTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | TTCCCATCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGACCATGCACCACCATTaGTCGTTCCATCTACAAAGC | + |
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Preference number: 4 (lower is better) Translates to: FPSKVHYQDHAYTVNQHKTMHHH*SFHLQS Trigger: GCTTTGTAGATGGAACGACCAATGGTGGTGCATGGT...CTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGATGGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | AGGCTGACTAATACAATTCCATTCTTCAAAGTACACGCAAGAACTAGGTTTTCAGCCGAGGTGACATCATaGTCTATCCCGTCCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: RLTNTIPFFKVHARTRFSAEVTS*SIPSTE Trigger: CTCTGTGGACGGGATAGACCATGATGTCACCTCGGC...TGAAAACCTAGTTCTTGCGTGTACTTTGAAGAATGGAATTGTATTAGTCAGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR TCA 90 bp | TCTTCAAAGTACACGCAAGAACTAGGTTTTCATTCTGTTCAGAGCCCCTCTGAATGCTGTGGATCAGGTTaGCAATTGTCTCATTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: SSKYTQELGFHSVQSPSECCGSG*QLSHCL Trigger: AAGGCAATGAGACAATTGTCAACCTGATCCACAGCA...TTCAGAGGGGCTCTGAACAGAATGAAAACCTAGTTCTTGCGTGTACTTTGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR TCA 90 bp | TTTATTCATCAGAATGCAATTCTGGGCCAATCTACAATCAAGACAAAACCCCAACTGCCACTTTCTTTGTaGTTGCCAGGTAGCCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: FIHQNAILGQSTIKTKPQLPLSL*LPGSQE Trigger: CTCCTGGCTACCTGGCAATCACAAAGAAAGTGGCAG...TTGGGGTTTTGTCTTGATTGTAGATTGGCCCAGAATTGCATTCTGATGAATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | TCAACTGCACACAACCTAAAAGAAAAGAGCCACATTGCATCTTACTACAGTCTAGAGAGTCTCTTCCGGTaGGAACTTCTCACAGCTAAG | + |
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Preference number: 4 (lower is better) Translates to: STAHNLKEKSHIASYYSLESLFR*ELLTAK Trigger: CTTAGCTGTGAGAAGTTCCCACCGGAAGAGACTCTC...TAGACTGTAGTAAGATGCAATGTGGCTCTTTTCTTTTAGGTTGTGTGCAGTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGAGACTACAAGCTTTGGAAAATTaGGTCATCAGGGCAGGAACT | + |
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Preference number: 4 (lower is better) Translates to: SKVHYQDHAYTVNQHKRLQALEN*VIRAGT Trigger: AGTTCCTGCCCTGATGACGCAATTTTCCAAAGCTTG...TAGTCTCTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | AAGCTATATCGGTTGACTTCTTCATGGCATCTGTCATGTGACATTGTCACCCATAGGGCTAAAAGGAACTaGCACTTTCTTTGTGATTGC | + |
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Preference number: 4 (lower is better) Translates to: KLYRLTSSWHLSCDIVTHRAKRN*HFLCDC Trigger: GCAATCACAAAGAAAGTGGCAGTTCCTTTTAGCCCT...ATGGGTGACAATGTCACATGACAGATGCCATGAAGAAGTCAACCGATATAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | AAGCTATATCGGTTGACTTCTTCATGGCATCTGTCATGTGACATTGTCACCCATTCGTTACACAGGTACTaGGCCAAGAAAATAAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: KLYRLTSSWHLSCDIVTHSLHRY*AKKISS Trigger: ACTGCTTATTTTCTTGGCCCAGTACCTGTGTAACGA...ATGGGTGACAATGTCACATGACAGATGCCATGAAGAAGTCAACCGATATAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | TCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGAGACTAGGCAGAAAGCACAAATaGAATGTCCATGATCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: SKVHYQDHAYTVNQHKRLGRKHK*NVHDPV Trigger: CACTGGATCATGGACATTCCATTTGTGCTTTCTGCC...TAGTCTCTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | TCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGAGACTACCGTGTCTCATCATATaGGTAATTAGCCACAAGGTC | + |
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Preference number: 4 (lower is better) Translates to: SKVHYQDHAYTVNQHKRLPCLII*VISHKV Trigger: GACCTTGTGGCTAATTACCCATATGATGAGACACGG...TAGTCTCTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CCA 90 bp | TTTATTCATCAGAATGCAATTCTGGGCCAATCTACAATCAAGACAAAACCCCAAGTCTCATTGCCTTTCTaGTACTCGTTACACAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: FIHQNAILGQSTIKTKPQVSLPF*YSLHRY Trigger: GTACCTGTGTAACGAGTACCAGAAAGGCAATGAGAC...TTGGGGTTTTGTCTTGATTGTAGATTGGCCCAGAATTGCATTCTGATGAATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | TCAACTGCACACAACCTAAAAGAAAAGAGCCACATTGCATCTTACTACAGTCTAACCGCCTCATTACCATaGATGTTCCCAATGTATTTA | + |
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Preference number: 4 (lower is better) Translates to: STAHNLKEKSHIASYYSLTASLP*MFPMYL Trigger: TAAATACATTGGGAACATGCATGGTAATGAGGCGGT...TAGACTGTAGTAAGATGCAATGTGGCTCTTTTCTTTTAGGTTGTGTGCAGTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR GCA 90 bp | GCTTATACAGTGAATCAGCACAAGAGACTAAGGACAACTTATATGGAACTATGTTTCCATCTACAAAGCTaGTGTCATCGTCATTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: AYTVNQHKRLRTTYMELCFHLQS*CHRHSC Trigger: GCAAGAATGACGATGACAGCAGCTTTGTAGATGGAA...ACATAGTTCCATATAAGTTGTCCTTAGTCTCTTGTGCTGATTCACTGTATAAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 90 bp | AGCCGCCGGCGGCGCCTCATGCCAGCCGCTGGCGCCCCGGGCTCCTaGGCTTCAGCCGTCAGCAGCCACCCGCCGGCCACCAGCGCGGCA | + |
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Preference number: 5 (lower is better) Translates to: SRRRRLMPAAGAPGS*ASAVSSHPPATSAA Trigger: TGCCGCGCTGGTGGCCGGCGGGTGGCTGCTGACGGCTGAAGCCCAGGAGCCCGGGGCGCCAGCGGCTGGCATGAGGCGCCGCCGGCGGCT 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 90 bp | CCAGCGCCTCGCGCAGCTCTGGATAGCGGTGGTACTCGAAGGAGATaGCGTCCTCTTGCTGGAGCCGCCGGCGGCGCCTCATGCCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: PAPRAALDSGGTRRR*RPLAGAAGGASCQP Trigger: CGGCTGGCATGAGGCGCCGCCGGCGGCTCCAGCAAGAGGACGGCATCTCCTTCGAGTACCACCGCTATCCAGAGCTGCGCGAGGCGCTGG 70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 90 bp | GGCGGTGCACTGCAGCCATACGGACACCAGCGCCTCGCGCAGCTCTaGATAGCGGTGGTACTCGAAGGAGATGCCGTCCTCTTGCTGGAG | + |
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Preference number: 5 (lower is better) Translates to: GGALQPYGHQRLAQL*IAVVLEGDAVLLLE Trigger: CTCCAGCAAGAGGACGGCATCTCCTTCGAGTACCACCGCTATCCAGAGCTGCGCGAGGCGCTGGTGTCCGTATGGCTGCAGTGCACCGCC 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 90 bp | CCAGGTCTGGGAAGTTACGGTTCAGATCTATTCCCTGGGCGTTGCTaGGGCCCACAAACCAGTCCTTCAGCTCGCCGGGCTGCGATGCGG | + |
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Preference number: 5 (lower is better) Translates to: PGLGSYGSDLFPGRC*GPQTSPSARRAAMR Trigger: CCGCATCGCAGCCCGGCGAGCTGAAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAGATCTGAACCGTAACTTCCCAGACCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 90 bp | TGTCCAGGTCTGGGAAGTTACGGTTCAGATCTATTCCCTGGGCGTTaGTGCGGCCCACAAACCAGTCCTTCAGCTCGCCGGGCTGCGATG | + |
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Preference number: 5 (lower is better) Translates to: CPGLGSYGSDLFPGR*CGPQTSPSARRAAM Trigger: CATCGCAGCCCGGCGAGCTGAAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAGATCTGAACCGTAACTTCCCAGACCTGGACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 90 bp | ACGATCCTGTCCAGGTCTGGGAAGTTACGGTTCAGATCTATTCCCTaGGCGTTGCTGCGGCCCACAAACCAGTCCTTCAGCTCGCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: TILSRSGKLRFRSIP*ALLRPTNQSFSSPG Trigger: GCCCGGCGAGCTGAAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAGATCTGAACCGTAACTTCCCAGACCTGGACAGGATCGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 90 bp | GGACGCTGTACCATGCACCACCATTGGTCGTTCCATCTACAAAGCTaGTGTCATCGTCATTCTTGCGACAGGGAGGTCGATTGGGGTCAG | + |
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Preference number: 5 (lower is better) Translates to: GRCTMHHHWSFHLQS*CHRHSCDREVDWGQ Trigger: CTGACCCCAATCGACCTCCCTGTCGCAAGAATGACGATGACAGCAGCTTTGTAGATGGAACGACCAATGGTGGTGCATGGTACAGCGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 90 bp | GACTGGGTTGAAAGAAGAGTACGCGCGAGCCAAGCTTTGGAAAATTaGGTCATCAGGGCAGGAACTGTATTCGTGAGCAGTACCGCTCCG | + |
|
Preference number: 5 (lower is better) Translates to: DWVERRVRASQALEN*VIRAGTVFVSSTAP Trigger: CGGAGCGGTACTGCTCACGAATACAGTTCCTGCCCTGATGACGCAATTTTCCAAAGCTTGGCTCGCGCGTACTCTTCTTTCAACCCAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 90 bp | AGACTCAAGCTCAAAGTCCACCCCAACAGCAGGGCTAAAAGGAACTaGCACTTTCTTTGTGATTGCCAGGTAGCCAGGAGCGGAGGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: RLKLKVHPNSRAKRN*HFLCDCQVARSGGC Trigger: ACAGCCTCCGCTCCTGGCTACCTGGCAATCACAAAGAAAGTGGCAGTTCCTTTTAGCCCTGCTGTTGGGGTGGACTTTGAGCTTGAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 90 bp | AGGACCGCCTTCTTTCTCATTAACATACACGATCCTGTCCAGGTCTaGGAAGTTACGGTTCAGATCTATTCCCTGGGCGTTGCTGCGGCC | + |
|
Preference number: 5 (lower is better) Translates to: RTAFFLINIHDPVQV*EVTVQIYSLGVAAA Trigger: GGCCGCAGCAACGCCCAGGGAATAGATCTGAACCGTAACTTCCCAGACCTGGACAGGATCGTGTATGTTAATGAGAAAGAAGGCGGTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 90 bp | ATTAGCCACAAGGTCTCCTCCGTGCAGATTGGCAGAAAGCACAAATaGAATGTCCATGATCCAGTGAATGACAGCCTTGGTCTCGGGGGC | + |
|
Preference number: 5 (lower is better) Translates to: ISHKVSSVQIGRKHK*NVHDPVNDSLGLGG Trigger: GCCCCCGAGACCAAGGCTGTCATTCACTGGATCATGGACATTCCATTTGTGCTTTCTGCCAATCTGCACGGAGGAGACCTTGTGGCTAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CAA 90 bp | GCTTATACAGTGAATCAGCACAAGAGACTAAGGACAACTTATATGGAACTATGTGGAGATGCCGTCCTCTaGCTGGAGCCGCCGGCGGCG | + |
|
Preference number: 5 (lower is better) Translates to: AYTVNQHKRLRTTYMELCGDAVL*LEPPAA Trigger: CGCCGCCGGCGGCTCCAGCAAGAGGACGGCATCTCC...ACATAGTTCCATATAAGTTGTCCTTAGTCTCTTGTGCTGATTCACTGTATAAGC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 90 bp | CACCCCAACAGCAGGGCTAAAAGGAACTGCCACTTTCTTTGTGATTaGCAGGTAGCCAGGAGCGGAGGCTGTAAGTTTATAGTTTCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: HPNSRAKRNCHFLCD*QVARSGGCKFIVSR Trigger: CCTGGAAACTATAAACTTACAGCCTCCGCTCCTGGCTACCTGGCAATCACAAAGAAAGTGGCAGTTCCTTTTAGCCCTGCTGTTGGGGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 90 bp | GCAGGAACTGTATTCGTGAGCAGTACCGCTCCGTGTCTCATCATATaGGTAATTAGCCACAAGGTCTCCTCCGTGCAGATTGGCAGAAAG | + |
|
Preference number: 5 (lower is better) Translates to: AGTVFVSSTAPCLII*VISHKVSSVQIGRK Trigger: CTTTCTGCCAATCTGCACGGAGGAGACCTTGTGGCTAATTACCCATATGATGAGACACGGAGCGGTACTGCTCACGAATACAGTTCCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 90 bp | ATCGTCATTCTTGCGACAGGGAGGTCGATTGGGGTCAGACATGACTaGGTTGAAAGAAGAGTACGCGCGAGCCAAGCTTTGGAAAATTGC | + |
|
Preference number: 5 (lower is better) Translates to: IVILATGRSIGVRHD*VERRVRASQALENC Trigger: GCAATTTTCCAAAGCTTGGCTCGCGCGTACTCTTCTTTCAACCCAGTCATGTCTGACCCCAATCGACCTCCCTGTCGCAAGAATGACGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS TCA 90 bp | CCGTGCAGATTGGCAGAAAGCACAAATGGAATGTCCATGATCCAGTaGATGACAGCCTTGGTCTCGGGGGCAAGCTTTGAATTTTGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: PCRLAESTNGMSMIQ*MTALVSGASFEFWS Trigger: GGACCAAAATTCAAAGCTTGCCCCCGAGACCAAGGCTGTCATTCACTGGATCATGGACATTCCATTTGTGCTTTCTGCCAATCTGCACGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CAA 90 bp | AAGCTATATCGGTTGACTTCTTCATGGCATCTGTCATGTGACATTGTCACCCATTCATGGACCCCGGGGTaGTCAGACAGCTCGATGACC | + |
|
Preference number: 5 (lower is better) Translates to: KLYRLTSSWHLSCDIVTHSWTPG*SDSSMT Trigger: GGTCATCGAGCTGTCTGACAACCCCGGGGTCCATGA...ATGGGTGACAATGTCACATGACAGATGCCATGAAGAAGTCAACCGATATAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CAA 90 bp | TTCCCATCCAAAGTGCATTACCAGGATCATGCTTATACAGTGAATCAGCACAAGCGTCCACAGAGATGGTaGCGTTGGCAATCGGGTTAC | + |
|
Preference number: 5 (lower is better) Translates to: FPSKVHYQDHAYTVNQHKRPQRW*RWQSGY Trigger: GTAACCCGATTGCCAACGCAACCATCTCTGTGGACG...CTTGTGCTGATTCACTGTATAAGCATGATCCTGGTAATGCACTTTGGATGGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 90 bp | TTGACAATTGTCTCATTGCCTTTCTGGTACTCGTTACACAGGTACTaGGCCAAGAAAATAAGCAGTTCCCGTCCAACCGCCTCATTACCA | + |
|
Preference number: 5 (lower is better) Translates to: LTIVSLPFWYSLHRY*AKKISSSRPTASLP Trigger: TGGTAATGAGGCGGTTGGACGGGAACTGCTTATTTTCTTGGCCCAGTACCTGTGTAACGAGTACCAGAAAGGCAATGAGACAATTGTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 90 bp | ATTCGGGTGCTGTGGATCAGGTTGACAATTGTCTCATTGCCTTTCTaGTACTCGTTACACAGGTACTGGGCCAAGAAAATAAGCAGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: IRVLWIRLTIVSLPF*YSLHRYWAKKISSS Trigger: GGAACTGCTTATTTTCTTGGCCCAGTACCTGTGTAACGAGTACCAGAAAGGCAATGAGACAATTGTCAACCTGATCCACAGCACCCGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CAA 90 bp | AGGCTGACTAATACAATTCCATTCTTCAAAGTACACGCAAGAACTAGGTTTTCATCTATTCCCTGGGCGTaGCTGCGGCCCACAAACCAG | + |
|
Preference number: 5 (lower is better) Translates to: RLTNTIPFFKVHARTRFSSIPWA*LRPTNQ Trigger: CTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAGA...TGAAAACCTAGTTCTTGCGTGTACTTTGAAGAATGGAATTGTATTAGTCAGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
||
| CDS-3UTR CAA 90 bp | AAGCTATATCGGTTGACTTCTTCATGGCATCTGTCATGTGACATTGTCACCCATGTGCTGTGGATCAGGTaGACAATTGTCTCATTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: KLYRLTSSWHLSCDIVTHVLWIR*TIVSLP Trigger: AGGCAATGAGACAATTGTCAACCTGATCCACAGCAC...ATGGGTGACAATGTCACATGACAGATGCCATGAAGAAGTCAACCGATATAGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CAA 90 bp | TCAACTGCACACAACCTAAAAGAAAAGAGCCACATTGCATCTTACTACAGTCTATCTCCTCCGTGCAGATaGGCAGAAAGCACAAATGGA | + |
|
Preference number: 5 (lower is better) Translates to: STAHNLKEKSHIASYYSLSPPCR*AESTNG Trigger: TCCATTTGTGCTTTCTGCCAATCTGCACGGAGGAGA...TAGACTGTAGTAAGATGCAATGTGGCTCTTTTCTTTTAGGTTGTGTGCAGTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CAA 90 bp | TCAACTGCACACAACCTAAAAGAAAAGAGCCACATTGCATCTTACTACAGTCTACCAAGCTTTGGAAAATaGCGTCATCAGGGCAGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: STAHNLKEKSHIASYYSLPSFGK*RHQGRN Trigger: GTTCCTGCCCTGATGACGCAATTTTCCAAAGCTTGG...TAGACTGTAGTAAGATGCAATGTGGCTCTTTTCTTTTAGGTTGTGTGCAGTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CAA 90 bp | GCTTATACAGTGAATCAGCACAAGAGACTAAGGACAACTTATATGGAACTATGTTCAGACATGACTGGGTaGAAAGAAGAGTACGCGCGA | + |
|
Preference number: 5 (lower is better) Translates to: AYTVNQHKRLRTTYMELCSDMTG*KEEYAR Trigger: TCGCGCGTACTCTTCTTTCAACCCAGTCATGTCTGA...ACATAGTTCCATATAAGTTGTCCTTAGTCTCTTGTGCTGATTCACTGTATAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CAA 90 bp | AGGCTGACTAATACAATTCCATTCTTCAAAGTACACGCAAGAACTAGGTTTTCATACCATGCACCACCATaGGTCGTTCCATCTACAAAG | + |
|
Preference number: 5 (lower is better) Translates to: RLTNTIPFFKVHARTRFSYHAPP*VVPSTK Trigger: CTTTGTAGATGGAACGACCAATGGTGGTGCATGGTA...TGAAAACCTAGTTCTTGCGTGTACTTTGAAGAATGGAATTGTATTAGTCAGCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS-3UTR CAA 90 bp | GCTTATACAGTGAATCAGCACAAGAGACTAAGGACAACTTATATGGAACTATGTTTGACAATTGTCTCATaGCCTTTCTGGTACTCGTTA | + |
|
Preference number: 5 (lower is better) Translates to: AYTVNQHKRLRTTYMELCLTIVS*PFWYSL Trigger: TAACGAGTACCAGAAAGGCAATGAGACAATTGTCAA...ACATAGTTCCATATAAGTTGTCCTTAGTCTCTTGTGCTGATTCACTGTATAAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 72 bp | CGGCGCCTCATGCCAGCCGCTGGCGCCCCGGGCTCCTaGGCTTCAGCCGTCAGCAGCCACCCGCCGGCCACC | + |
|
Preference number: 6 (lower is better) Translates to: RRLMPAAGAPGS*ASAVSSHPPAT Trigger: GGTGGCCGGCGGGTGGCTGCTGACGGCTGAAGCCCAGGAGCCCGGGGCGCCAGCGGCTGGCATGAGGCGCCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | TGCCGTCCTCTTGCTGGAGCCGCCGGCGGCGCCTCATaGCAGCCGCTGGCGCCCCGGGCTCCTGGGCTTCAG | + |
|
Preference number: 6 (lower is better) Translates to: CRPLAGAAGGAS*QPLAPRAPGLQ Trigger: CTGAAGCCCAGGAGCCCGGGGCGCCAGCGGCTGGCATGAGGCGCCGCCGGCGGCTCCAGCAAGAGGACGGCA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | CGCGCAGCTCTGGATAGCGGTGGTACTCGAAGGAGATaGCGTCCTCTTGCTGGAGCCGCCGGCGGCGCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: RAALDSGGTRRR*RPLAGAAGGAS Trigger: TGAGGCGCCGCCGGCGGCTCCAGCAAGAGGACGGCATCTCCTTCGAGTACCACCGCTATCCAGAGCTGCGCG 68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS TCA 72 bp | GGCCCTCGAAGCTGCGCCCCACTGTGTAGATTCTGCTaGTGGCGGTGCACTGCAGCCATACGGACACCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: GPRSCAPLCRFC*WRCTAAIRTPA Trigger: CGCTGGTGTCCGTATGGCTGCAGTGCACCGCCATCAGCAGAATCTACACAGTGGGGCGCAGCTTCGAGGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | GCCCACAAACCAGTCCTTCAGCTCGCCGGGCTGCGATaGGGCTTTCTCAAAGCCGTCGGGGTTCAAGGAGGG | + |
|
Preference number: 6 (lower is better) Translates to: AHKPVLQLAGLR*GFLKAVGVQGG Trigger: CCCTCCTTGAACCCCGACGGCTTTGAGAAAGCCGCATCGCAGCCCGGCGAGCTGAAGGACTGGTTTGTGGGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | CTGCGGCCCACAAACCAGTCCTTCAGCTCGCCGGGCTaGGATGCGGCTTTCTCAAAGCCGTCGGGGTTCAAG | + |
|
Preference number: 6 (lower is better) Translates to: LRPTNQSFSSPG*DAAFSKPSGFK Trigger: CTTGAACCCCGACGGCTTTGAGAAAGCCGCATCGCAGCCCGGCGAGCTGAAGGACTGGTTTGTGGGCCGCAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 72 bp | CTGCAGCCATACGGACACCAGCGCCTCGCGCAGCTCTaGATAGCGGTGGTACTCGAAGGAGATGCCGTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: LQPYGHQRLAQL*IAVVLEGDAVL Trigger: GAGGACGGCATCTCCTTCGAGTACCACCGCTATCCAGAGCTGCGCGAGGCGCTGGTGTCCGTATGGCTGCAG 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CAA 72 bp | TTAAATTCAGGTTCACCCGGCTCATGGACCCCGGGGTaGTCAGACAGCTCGATGACCAGGAGCTCCCGGCCC | + |
|
Preference number: 6 (lower is better) Translates to: LNSGSPGSWTPG*SDSSMTRSSRP Trigger: GGGCCGGGAGCTCCTGGTCATCGAGCTGTCTGACAACCCCGGGGTCCATGAGCCGGGTGAACCTGAATTTAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CAA 90 bp | CTGTCCAGGTCTGGGAAGTTACGGTTCAGATCTATTCCCTGGGCGTaGCTGCGGCCCACAAACCAGTCCTTCAGCTCGCCGGGCTGCGAT | + |
|
Preference number: 6 (lower is better) Translates to: LSRSGKLRFRSIPWA*LRPTNQSFSSPGCD Trigger: ATCGCAGCCCGGCGAGCTGAAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAGATCTGAACCGTAACTTCCCAGACCTGGACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | GGAAGTTACGGTTCAGATCTATTCCCTGGGCGTTGCTaGGGCCCACAAACCAGTCCTTCAGCTCGCCGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: GSYGSDLFPGRC*GPQTSPSARRA Trigger: AGCCCGGCGAGCTGAAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAGATCTGAACCGTAACTTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | CTGGGAAGTTACGGTTCAGATCTATTCCCTGGGCGTTaGTGCGGCCCACAAACCAGTCCTTCAGCTCGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: LGSYGSDLFPGR*CGPQTSPSARR Trigger: CCGGCGAGCTGAAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAGATCTGAACCGTAACTTCCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CAA 72 bp | TCTGGGAAGTTACGGTTCAGATCTATTCCCTGGGCGTaGCTGCGGCCCACAAACCAGTCCTTCAGCTCGCCG | + |
|
Preference number: 6 (lower is better) Translates to: SGKLRFRSIPWA*LRPTNQSFSSP Trigger: CGGCGAGCTGAAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAGATCTGAACCGTAACTTCCCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 72 bp | TCCAGGTCTGGGAAGTTACGGTTCAGATCTATTCCCTaGGCGTTGCTGCGGCCCACAAACCAGTCCTTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: SRSGKLRFRSIP*ALLRPTNQSFS Trigger: GCTGAAGGACTGGTTTGTGGGCCGCAGCAACGCCCAGGGAATAGATCTGAACCGTAACTTCCCAGACCTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 72 bp | CATCATGGTCTATCCCGTCCACAGAGATGGTTGCGTTaGCAATCGGGTTACCCTGAAGGTCACGGACAAACC | + |
|
Preference number: 6 (lower is better) Translates to: HHGLSRPQRWLR*QSGYPEGHGQT Trigger: GGTTTGTCCGTGACCTTCAGGGTAACCCGATTGCCAACGCAACCATCTCTGTGGACGGGATAGACCATGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CAA 72 bp | GATCTCGAAGCAGTTGCTGCTCAGGTAATTGAAGTCTaGCATTCCACCGGGGACGCTGTACCATGCACCACC | + |
|
Preference number: 6 (lower is better) Translates to: DLEAVAAQVIEV*HSTGDAVPCTT Trigger: GGTGGTGCATGGTACAGCGTCCCCGGTGGAATGCAAGACTTCAATTACCTGAGCAGCAACTGCTTCGAGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS TCA 72 bp | TCCACAGAGATGGTTGCGTTGGCAATCGGGTTACCCTaGAGGTCACGGACAAACCCTTTAACACCTCGGTGT | + |
|
Preference number: 6 (lower is better) Translates to: STEMVALAIGLP*RSRTNPLTPRC Trigger: ACACCGAGGTGTTAAAGGGTTTGTCCGTGACCTTCAGGGTAACCCGATTGCCAACGCAACCATCTCTGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | CTCAAAGTCCACCCCAACAGCAGGGCTAAAAGGAACTaGCACTTTCTTTGTGATTGCCAGGTAGCCAGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: LKVHPNSRAKRN*HFLCDCQVARS Trigger: GCTCCTGGCTACCTGGCAATCACAAAGAAAGTGGCAGTTCCTTTTAGCCCTGCTGTTGGGGTGGACTTTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CAA 90 bp | TTGAAGTCTTGCATTCCACCGGGGACGCTGTACCATGCACCACCATaGGTCGTTCCATCTACAAAGCTGCTGTCATCGTCATTCTTGCGA | + |
|
Preference number: 6 (lower is better) Translates to: LKSCIPPGTLYHAPP*VVPSTKLLSSSFLR Trigger: TCGCAAGAATGACGATGACAGCAGCTTTGTAGATGGAACGACCAATGGTGGTGCATGGTACAGCGTCCCCGGTGGAATGCAAGACTTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | ACCATGCACCACCATTGGTCGTTCCATCTACAAAGCTaGTGTCATCGTCATTCTTGCGACAGGGAGGTCGAT | + |
|
Preference number: 6 (lower is better) Translates to: TMHHHWSFHLQS*CHRHSCDREVD Trigger: ATCGACCTCCCTGTCGCAAGAATGACGATGACAGCAGCTTTGTAGATGGAACGACCAATGGTGGTGCATGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | ATTGAAGTCTTGCATTCCACCGGGGACGCTGTACCATaGACCACCATTGGTCGTTCCATCTACAAAGCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: IEVLHSTGDAVP*TTIGRSIYKAA Trigger: AGCAGCTTTGTAGATGGAACGACCAATGGTGGTGCATGGTACAGCGTCCCCGGTGGAATGCAAGACTTCAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 72 bp | GTCTCATTGCCTTTCTGGTACTCGTTACACAGGTACTaGGCCAAGAAAATAAGCAGTTCCCGTCCAACCGCC | + |
|
Preference number: 6 (lower is better) Translates to: VSLPFWYSLHRY*AKKISSSRPTA Trigger: GGCGGTTGGACGGGAACTGCTTATTTTCTTGGCCCAGTACCTGTGTAACGAGTACCAGAAAGGCAATGAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CAA 90 bp | GTCAGACATGACTGGGTTGAAAGAAGAGTACGCGCGAGCCAAGCTTaGGAAAATTGCGTCATCAGGGCAGGAACTGTATTCGTGAGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: VRHDWVERRVRASQA*ENCVIRAGTVFVSS Trigger: ACTGCTCACGAATACAGTTCCTGCCCTGATGACGCAATTTTCCAAAGCTTGGCTCGCGCGTACTCTTCTTTCAACCCAGTCATGTCTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | GAAAGAAGAGTACGCGCGAGCCAAGCTTTGGAAAATTaGGTCATCAGGGCAGGAACTGTATTCGTGAGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: ERRVRASQALEN*VIRAGTVFVSS Trigger: ACTGCTCACGAATACAGTTCCTGCCCTGATGACGCAATTTTCCAAAGCTTGGCTCGCGCGTACTCTTCTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 72 bp | GTATTCGTGAGCAGTACCGCTCCGTGTCTCATCATATaGGTAATTAGCCACAAGGTCTCCTCCGTGCAGATT | + |
|
Preference number: 6 (lower is better) Translates to: VFVSSTAPCLII*VISHKVSSVQI Trigger: AATCTGCACGGAGGAGACCTTGTGGCTAATTACCCATATGATGAGACACGGAGCGGTACTGCTCACGAATAC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 72 bp | ACTGGGTTGAAAGAAGAGTACGCGCGAGCCAAGCTTTaGAAAATTGCGTCATCAGGGCAGGAACTGTATTCG | + |
|
Preference number: 6 (lower is better) Translates to: TGLKEEYARAKL*KIASSGQELYS Trigger: CGAATACAGTTCCTGCCCTGATGACGCAATTTTCCAAAGCTTGGCTCGCGCGTACTCTTCTTTCAACCCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CAA 72 bp | ATTCGGGTGCTGTGGATCAGGTTGACAATTGTCTCATaGCCTTTCTGGTACTCGTTACACAGGTACTGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: IRVLWIRLTIVS*PFWYSLHRYWA Trigger: GGCCCAGTACCTGTGTAACGAGTACCAGAAAGGCAATGAGACAATTGTCAACCTGATCCACAGCACCCGAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
||
| CDS CAA 72 bp | GACTGGGTTGAAAGAAGAGTACGCGCGAGCCAAGCTTaGGAAAATTGCGTCATCAGGGCAGGAACTGTATTC | + |
|
Preference number: 6 (lower is better) Translates to: DWVERRVRASQA*ENCVIRAGTVF Trigger: GAATACAGTTCCTGCCCTGATGACGCAATTTTCCAAAGCTTGGCTCGCGCGTACTCTTCTTTCAACCCAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
||
| CDS TCA 72 bp | TTGGCAGAAAGCACAAATGGAATGTCCATGATCCAGTaGATGACAGCCTTGGTCTCGGGGGCAAGCTTTGAA | + |
|
Preference number: 6 (lower is better) Translates to: LAESTNGMSMIQ*MTALVSGASFE Trigger: TTCAAAGCTTGCCCCCGAGACCAAGGCTGTCATTCACTGGATCATGGACATTCCATTTGTGCTTTCTGCCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS GCA 72 bp | AGCAGGGCTAAAAGGAACTGCCACTTTCTTTGTGATTaGCAGGTAGCCAGGAGCGGAGGCTGTAAGTTTATA | + |
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Preference number: 6 (lower is better) Translates to: SRAKRNCHFLCD*QVARSGGCKFI Trigger: TATAAACTTACAGCCTCCGCTCCTGGCTACCTGGCAATCACAAAGAAAGTGGCAGTTCCTTTTAGCCCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 72 bp | AAGGTCTCCTCCGTGCAGATTGGCAGAAAGCACAAATaGAATGTCCATGATCCAGTGAATGACAGCCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: KVSSVQIGRKHK*NVHDPVNDSLG Trigger: ACCAAGGCTGTCATTCACTGGATCATGGACATTCCATTTGTGCTTTCTGCCAATCTGCACGGAGGAGACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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| CDS CCA 72 bp | CTGTGGATCAGGTTGACAATTGTCTCATTGCCTTTCTaGTACTCGTTACACAGGTACTGGGCCAAGAAAATA | + |
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Preference number: 6 (lower is better) Translates to: LWIRLTIVSLPF*YSLHRYWAKKI Trigger: TATTTTCTTGGCCCAGTACCTGTGTAACGAGTACCAGAAAGGCAATGAGACAATTGTCAACCTGATCCACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048967.9 |
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