RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020841

Ensembl transcript IDs: ENSMUST00000021201.6

Found 283 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGAAGAAATGGAAGGTCTCCAGGAGAAACACTGGAGGCATGCACTaGCCACCCCATATGGCTTCAGTGTCCTCGGCTGCCGAAGTAGTG +
Preference number: 1 (lower is better)
Translates to: LKKWKVSRRNTGGMH*PPHMASVSSAAEVV
Trigger: CACTACTTCGGCAGCCGAGGACACTGAAGCCATATGGGGTGGGCAGTGCATGCCTCCAGTGTTTCTCCTGGAGACCTTCCATTTCTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR GCA 90 bp TGGAGGCATGCACTGCCCACCCCATATGGCTTCAGTGTCCTCGGCTaGCGAAGTAGTGTAGGATTAGATCGGTTTCACAACCCAAAGAAG +
Preference number: 1 (lower is better)
Translates to: WRHALPTPYGFSVLG*RSSVGLDRFHNPKK
Trigger: CTTCTTTGGGTTGTGAAACCGATCTAATCCTACACTACTTCGGCAGCCGAGGACACTGAAGCCATATGGGGTGGGCAGTGCATGCCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 90 bp GACAACGTCCTTGCTTCTGCTCCATCTCCCTTTCACCTCTACTCATaGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCTCCTCT +
Preference number: 1 (lower is better)
Translates to: DNVLASAPSPFHLYS*DIWCLHSKASEFSS
Trigger: AGAGGAGAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAAGGGAGATGGAGCAGAAGCAAGGACGTTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 90 bp TCCCAAAGCCAGTTCTCTTCGGTGAGAATGGCAAGTGTTTTTCGTTaGATCAGATCCCAGCACCACCCGGAGTTCACTGCTACACCAAAG +
Preference number: 1 (lower is better)
Translates to: SQSQFSSVRMASVFR*IRSQHHPEFTATPK
Trigger: CTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGGATCTGATCCAACGAAAAACACTTGCCATTCTCACCGAAGAGAACTGGCTTTGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 90 bp GGAAAGTGTCCTTTAGTGAACTCTAGTAACGTGAAGGCTGTCACATaGACTTGGTTTCTATTTGTCCCAAGCAGGGCCCAGCCACAGGCC +
Preference number: 1 (lower is better)
Translates to: GKCPLVNSSNVKAVT*TWFLFVPSRAQPQA
Trigger: GGCCTGTGGCTGGGCCCTGCTTGGGACAAATAGAAACCAAGTTCATGTGACAGCCTTCACGTTACTAGAGTTCACTAAAGGACACTTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 90 bp CAAACTTCTAATACTGTGACACTTGAGTCCAGGACTCTGAAGAAATaGAAGGTCTCCAGGAGAAACACTGGAGGCATGCACTGCCCACCC +
Preference number: 1 (lower is better)
Translates to: QTSNTVTLESRTLKK*KVSRRNTGGMHCPP
Trigger: GGGTGGGCAGTGCATGCCTCCAGTGTTTCTCCTGGAGACCTTCCATTTCTTCAGAGTCCTGGACTCAAGTGTCACAGTATTAGAAGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 90 bp GCTACCATAAAACAATCCACCAGAGACCCACACTGCAGGACACCATaGCATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAA +
Preference number: 1 (lower is better)
Translates to: ATIKQSTRDPHCRTP*HVHSQEASERAGTK
Trigger: TTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCCTGCAGTGTGGGTCTCTGGTGGATTGTTTTATGGTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 90 bp GGAAGAAGGCTTATAAACTCATCACGAGGACAAAGCAACACCTTGTaGGCAAAGGAAAGGCACATCTCAGACTGGGGCAAACTTCTAATA +
Preference number: 1 (lower is better)
Translates to: GRRLINSSRGQSNTL*AKERHISDWGKLLI
Trigger: TATTAGAAGTTTGCCCCAGTCTGAGATGTGCCTTTCCTTTGCTCACAAGGTGTTGCTTTGTCCTCGTGATGAGTTTATAAGCCTTCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 90 bp CAGACAGACACAATAAAATACCAATCTTTTAGGCCTGACTGGCATTaGAGAGGACACCTTCATACCAATGTTCTATCACATGGCAGTCCT +
Preference number: 1 (lower is better)
Translates to: QTDTIKYQSFRPDWH*RGHLHTNVLSHGSP
Trigger: AGGACTGCCATGTGATAGAACATTGGTATGAAGGTGTCCTCTTCAATGCCAGTCAGGCCTAAAAGATTGGTATTTTATTGTGTCTGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR GCA 90 bp CATCATTTAGGAAAACAAAGCATTACCGGAAGAGATGGAGTCATGTaGTCTTCATTAGCATTAACTGCCACTAATTGTTCTGTTCATGCA +
Preference number: 1 (lower is better)
Translates to: HHLGKQSITGRDGVM*SSLALTATNCSVHA
Trigger: TGCATGAACAGAACAATTAGTGGCAGTTAATGCTAATGAAGAGCACATGACTCCATCTCTTCCGGTAATGCTTTGTTTTCCTAAATGATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR GCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGATTTTGGAGGCCCATGTaGAGAGGCCACACTATCTCC +
Preference number: 2 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRFWRPM*RGHTIS
Trigger: GGAGATAGTGTGGCCTCTGCACATGGGCCTCCAAAA...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR TCA 90 bp CACACTATCTCCATGACAGTATGCCATCACAGGGCAGAGGCTTGGGCCGGAGCATGGATCCAAGTGTACTaGGAATGTGCAAGTAGGTTT +
Preference number: 2 (lower is better)
Translates to: HTISMTVCHHRAEAWAGAWIQVY*ECASRF
Trigger: AAACCTACTTGCACATTCTCAGTACACTTGGATCCA...TGCTCCGGCCCAAGCCTCTGCCCTGTGATGGCATACTGTCATGGAGATAGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR GCA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACACACAGCCACTTGGGTaGATTCCTCACCAAGTGTGG +
Preference number: 2 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNTQPLG*IPHQVW
Trigger: CCACACTTGGTGAGGAATGCACCCAAGTGGCTGTGT...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCCCACAGGCCACTTGTTaGTTTTCTGACTTGGCACTT +
Preference number: 2 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSPQATC*FSDLAL
Trigger: AAGTGCCAAGTCAGAAAACCAACAAGTGGCCTGTGG...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 90 bp GCAGCAGCACCTATGGGTTTTACCAGGATAAGACAGACAACGTCCTaGCTTCTGCTCCATCTCCCTTTCACCTCTACTCATGGGACATCT +
Preference number: 2 (lower is better)
Translates to: AAAPMGFTRIRQTTS*LLLHLPFTSTHGTS
Trigger: AGATGTCCCATGAGTAGAGGTGAAAGGGAGATGGAGCAGAAGCAAGGACGTTGTCTGTCTTATCCTGGTAAAACCCATAGGTGCTGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCCAGCTATGTGCTAACTaGAGAAGAGAACTCCTCAGT +
Preference number: 2 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSQLCAN*RRELLS
Trigger: ACTGAGGAGTTCTCTTCTCCAGTTAGCACATAGCTG...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAAGGACTCTGAAGAAATaGAAGGTCTCCAGGAGAAAC +
Preference number: 2 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRRTLKK*KVSRRN
Trigger: GTTTCTCCTGGAGACCTTCCATTTCTTCAGAGTCCT...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR TCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGACAGCCCACCAGTTCTaGCCCAGCTTGGAAACAGGT +
Preference number: 2 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRTAHQF*PSLETG
Trigger: ACCTGTTTCCAAGCTGGGTCAGAACTGGTGGGCTGT...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR GCA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACTCTGACTGGTGTCCCTaGCTTAATGTTTCTGGATTC +
Preference number: 2 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNSDWCP*LNVSGF
Trigger: GAATCCAGAAACATTAAGGCAGGGACACCAGTCAGA...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CCA 90 bp TTTCACCTCTACTCATGGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCAGTTCTGACCCAGCTTaGAAACAGGTAGAAAGACAA +
Preference number: 2 (lower is better)
Translates to: FHLYSWDIWCLHSKASEFSSDPA*KQVERQ
Trigger: TTGTCTTTCTACCTGTTTCCAAGCTGGGTCAGAACT...GAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 90 bp CCGCACAGGGAGAACTGTGAACATCACCGATCCATCACATTGTTTTaGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGA +
Preference number: 2 (lower is better)
Translates to: PHRENCEHHRSITLF*LRSREGRRLINSSR
Trigger: TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGTGATGGATCGGTGATGTTCACAGTTCTCCCTGTGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR GCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGTCATGGGACATCTGGTaGCTCCACAGCAAAGCCAGT +
Preference number: 2 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRSWDIW*LHSKAS
Trigger: ACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGA...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAACAACATCTACTAGCTaGCTTTATGCTGTCTCTATA +
Preference number: 2 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRTTSTS*LYAVSI
Trigger: TATAGAGACAGCATAAAGCCAGCTAGTAGATGTTGT...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGTGTCAGAGTCTGACTaGTGTCCCTGCCTTAATGTT +
Preference number: 2 (lower is better)
Translates to: TLFLLRSREGRRLINSSRVSESD*CPCLNV
Trigger: AACATTAAGGCAGGGACACCAGTCAGACTCTGACAC...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 90 bp GAGAACTCCTCAGTAGATGGAGAAAAATCTCGAGTTTTTAAAGCTTaGTGTCAGAGTCTGACTGGTGTCCCTGCCTTAATGTTTCTGGAT +
Preference number: 2 (lower is better)
Translates to: ENSSVDGEKSRVFKA*CQSLTGVPALMFLD
Trigger: ATCCAGAAACATTAAGGCAGGGACACCAGTCAGACTCTGACACAAAGCTTTAAAAACTCGAGATTTTTCTCCATCTACTGAGGAGTTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR GCA 90 bp GACCCAGCTTGGAAACAGGTAGAAAGACAAATACGGAAGCCCGTTTATTCCATTAATTTCTCTTCTTACTaGAGTGTCTCCCAAGAAGAG +
Preference number: 2 (lower is better)
Translates to: DPAWKQVERQIRKPVYSINFSSY*SVSQEE
Trigger: CTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATT...AATGGAATAAACGGGCTTCCGTATTTGTCTTTCTACCTGTTTCCAAGCTGGGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR GCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGATGCCCCATCTTCTGCTaGATAAATAGAAATCAGATT +
Preference number: 2 (lower is better)
Translates to: TLFLLRSREGRRLINSSRCPIFC*INRNQI
Trigger: AATCTGATTTCTATTTATGCAGCAGAAGATGGGGCA...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAAGTTCAGCAGCAACTTaGCCATTAAAAACATTCAAA +
Preference number: 2 (lower is better)
Translates to: TLFLLRSREGRRLINSSRSSAAT*PLKTFK
Trigger: TTTGAATGTTTTTAATGGCCAAGTTGCTGCTGAACT...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR GCA 72 bp TGGAAGGTCTCCAGGAGAAACACTGGAGGCATGCACTaGCCACCCCATATGGCTTCAGTGTCCTCGGCTGCC +
Preference number: 3 (lower is better)
Translates to: WKVSRRNTGGMH*PPHMASVSSAA
Trigger: GGCAGCCGAGGACACTGAAGCCATATGGGGTGGGCAGTGCATGCCTCCAGTGTTTCTCCTGGAGACCTTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR GCA 72 bp CCATCTCCCTTTCACCTCTACTCATGGGACATCTGGTaGCTCCACAGCAAAGCCAGTGAGTTCTCCTCTAGG +
Preference number: 3 (lower is better)
Translates to: PSPFHLYSWDIW*LHSKASEFSSR
Trigger: CCTAGAGGAGAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAAGGGAGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 72 bp GCTCCATCTCCCTTTCACCTCTACTCATGGGACATCTaGTGCCTCCACAGCAAAGCCAGTGAGTTCTCCTCT +
Preference number: 3 (lower is better)
Translates to: APSPFHLYSWDI*CLHSKASEFSS
Trigger: AGAGGAGAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAAGGGAGATGGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 72 bp GACTCTGAAGAAATGGAAGGTCTCCAGGAGAAACACTaGAGGCATGCACTGCCCACCCCATATGGCTTCAGT +
Preference number: 3 (lower is better)
Translates to: DSEEMEGLQEKH*RHALPTPYGFS
Trigger: ACTGAAGCCATATGGGGTGGGCAGTGCATGCCTCCAGTGTTTCTCCTGGAGACCTTCCATTTCTTCAGAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CAA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCAGAAGAGCTGTCATTTaGCCTGGTACGTATACAGGG +
Preference number: 3 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSRRAVI*PGTYTG
Trigger: CCCTGTATACGTACCAGGCAAAATGACAGCTCTTCT...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 72 bp ATCTCCATGACAGTATGCCATCACAGGGCAGAGGCTTaGGCCGGAGCATCAAGTGTAGACATTTTGGATCCA +
Preference number: 3 (lower is better)
Translates to: ISMTVCHHRAEA*AGASSVDILDP
Trigger: TGGATCCAAAATGTCTACACTTGATGCTCCGGCCCAAGCCTCTGCCCTGTGATGGCATACTGTCATGGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 72 bp CAGTTCTCTTCGGTGAGAATGGCAAGTGTTTTTCGTTaGATCAGATCCCAGCACCACCCGGAGTTCACTGCT +
Preference number: 3 (lower is better)
Translates to: QFSSVRMASVFR*IRSQHHPEFTA
Trigger: AGCAGTGAACTCCGGGTGGTGCTGGGATCTGATCCAACGAAAAACACTTGCCATTCTCACCGAAGAGAACTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CAA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAGGCTGTCACATGAACTaGGTTTCTATTTGTCCCAAG +
Preference number: 3 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRGCHMN*VSICPK
Trigger: CTTGGGACAAATAGAAACCAAGTTCATGTGACAGCC...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 72 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTaGTGTAGTTACTTGAGATCATCTTACCAAACCCTA +
Preference number: 3 (lower is better)
Translates to: PSTTRSSLLHQS*CSYLRSSYQTL
Trigger: TAGGGTTTGGTAAGATGATCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 72 bp TTGCTAAACCTTACAAGAGAGGTAGTAAAATCCTGCTaGGAGCACAGCCCACCAGTTCTGACCCAGCTTGGA +
Preference number: 3 (lower is better)
Translates to: LLNLTREVVKSC*EHSPPVLTQLG
Trigger: TCCAAGCTGGGTCAGAACTGGTGGGCTGTGCTCTCAGCAGGATTTTACTACCTCTCTTGTAAGGTTTAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 72 bp AAACAATCCACCAGAGACCCACACTGCAGGACACCATaGCATGTTCATAGCCAAGAAGCTTCTGAGAGAGCA +
Preference number: 3 (lower is better)
Translates to: KQSTRDPHCRTP*HVHSQEASERA
Trigger: TGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCCTGCAGTGTGGGTCTCTGGTGGATTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 72 bp GTCATATGGAAACCGCAGGTGTACACACAGAAGGGCTaGAATGTAGGAAATGCTAAGGAACAGGCGTTCCTA +
Preference number: 3 (lower is better)
Translates to: VIWKPQVYTQKG*NVGNAKEQAFL
Trigger: TAGGAACGCCTGTTCCTTAGCATTTCCTACATTTCAGCCCTTCTGTGTGTACACCTGCGGTTTCCATATGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR GCA 72 bp TCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTaGCTGGTACGTATACAGGGAGATATGCAAACCGTG +
Preference number: 3 (lower is better)
Translates to: SYCSVSQEELSF*LVRIQGDMQTV
Trigger: CACGGTTTGCATATCTCCCTGTATACGTACCAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 72 bp ACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTaGTACGTATACAGGGAGATATGCAAACCGTGCTTT +
Preference number: 3 (lower is better)
Translates to: TAVSPKKSCHFA*YVYREICKPCF
Trigger: AAAGCACGGTTTGCATATCTCCCTGTATACGTACCAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 72 bp GAAAAAGACTGTCAAGGGAATCATAGGACAAAGGACTaGATTACTTTTGGAGGCCCATGTGCAGAGGCCACA +
Preference number: 3 (lower is better)
Translates to: EKDCQGNHRTKD*ITFGGPCAEAT
Trigger: TGTGGCCTCTGCACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGTCTTTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 72 bp CTTATAAACTCATCACGAGGACAAAGCAACACCTTGTaGGCAAAGGAAAGGCACATCTCAGACTGGGGCAAA +
Preference number: 3 (lower is better)
Translates to: LINSSRGQSNTL*AKERHISDWGK
Trigger: TTTGCCCCAGTCTGAGATGTGCCTTTCCTTTGCTCACAAGGTGTTGCTTTGTCCTCGTGATGAGTTTATAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 72 bp TGGTGTAGTTACTTGAGATCATCTTACCAAACCCTATaGGCACAAGTGCATCCGCACAGGGAGAACTGTGAA +
Preference number: 3 (lower is better)
Translates to: WCSYLRSSYQTL*AQVHPHRENCE
Trigger: TTCACAGTTCTCCCTGTGCGGATGCACTTGTGCTCATAGGGTTTGGTAAGATGATCTCAAGTAACTACACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 72 bp GGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTaGGATCATCTTACCAAACCCTATGAGCACAAGTGC +
Preference number: 3 (lower is better)
Translates to: GVHCYTKAGVVT*DHLTKPYEHKC
Trigger: GCACTTGTGCTCATAGGGTTTGGTAAGATGATCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR-3UTR CAA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTACTTCCCAAAGCTCTTaGAAGGCGGAAGGAATTTCT +
Preference number: 3 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFTSQSS*KAEGIS
Trigger: AGAAATTCCTTCCGCCTTCAAAGAGCTTTGGGAAGT...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR TCA 72 bp CAGTTTGGAAAGGTAAGAGCTAGTTTTGTGATCCCCTaGTTTAGTACAAGTTCAGCAGCAACTTGGCCATTA +
Preference number: 3 (lower is better)
Translates to: QFGKVRASFVIP*FSTSSAATWPL
Trigger: TAATGGCCAAGTTGCTGCTGAACTTGTACTAAATCAGGGGATCACAAAACTAGCTCTTACCTTTCCAAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR GCA 72 bp GGAAAACAAAGCATTACCGGAAGAGATGGAGTCATGTaGTCTTCATTAGCATTAACTGCCACTAATTGTTCT +
Preference number: 3 (lower is better)
Translates to: GKQSITGRDGVM*SSLALTATNCS
Trigger: AGAACAATTAGTGGCAGTTAATGCTAATGAAGAGCACATGACTCCATCTCTTCCGGTAATGCTTTGTTTTCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CCA 72 bp ACATCATTTAGGAAAACAAAGCATTACCGGAAGAGATaGAGTCATGTGCTCTTCATTAGCATTAACTGCCAC +
Preference number: 3 (lower is better)
Translates to: TSFRKTKHYRKR*SHVLFISINCH
Trigger: GTGGCAGTTAATGCTAATGAAGAGCACATGACTCCATCTCTTCCGGTAATGCTTTGTTTTCCTAAATGATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCGCCCCAGGCCCGCTGTaGGGCGCAGCACCCACAGCG +
Preference number: 4 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSAPGPL*GAAPTA
Trigger: CGCTGTGGGTGCTGCGCCTCACAGCGGGCCTGGGGC...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCCCCACCAGCTTCACCTaGGGCCGGCCGGGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSPTSFT*GRPGSS
Trigger: GCTGCTGCCCGGCCGGCCGCAGGTGAAGCTGGTGGG...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ACTGTCAAGGGAATCATAGGACAAAGGACTGAATTACTTTTGGAGGCCCATGTGACACGTCGGTGGTGTTaGGCAGGCGGACCAGGCGCG +
Preference number: 4 (lower is better)
Translates to: TVKGIIGQRTELLLEAHVTRRWC*AGGPGA
Trigger: CGCGCCTGGTCCGCCTGCTCAACACCACCGACGTGT...CACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp CACACTATCTCCATGACAGTATGCCATCACAGGGCAGAGGCTTGGGCCGGAGCATGGCTGATGGGAGGATaGTGTTCCAGGAGGGATATT +
Preference number: 4 (lower is better)
Translates to: HTISMTVCHHRAEAWAGAWLMGG*CSRRDI
Trigger: AATATCCCTCCTGGAACACCATCCTCCCATCAGCCA...TGCTCCGGCCCAAGCCTCTGCCCTGTGATGGCATACTGTCATGGAGATAGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGTGCGGATCCAGTCGATaGGGGCGCGCACCTCCGGCA +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRCGSSR*GRAPPA
Trigger: TGCCGGAGGTGCGCGCCCTCATCGACTGGATCCGCA...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GACCTGAATAAGAGAAACCCCAGCTATGTGCTAACTGGAGAAGAGAACTCCTCATTGATGTGCGCCGCCTaGGCCGAGCTCCTCAGTAGC +
Preference number: 4 (lower is better)
Translates to: DLNKRNPSYVLTGEENSSLMCAA*AELLSS
Trigger: GCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAA...TGAGGAGTTCTCTTCTCCAGTTAGCACATAGCTGGGGTTTCTCTTATTCAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACTGGTGTCGTCAGTGCTaGTGCTATGCCCCCTGCCTT +
Preference number: 4 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNWCRQC*CYAPCL
Trigger: AAGGCAGGGGGCATAGCACCAGCACTGACGACACCA...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 72 bp CCAGTTCTCTTCGGTGAGAATGGCAAGTGTTTTTCGTaGGATCAGATCCCAGCACCACCCGGAGTTCACTGC +
Preference number: 4 (lower is better)
Translates to: PVLFGENGKCFS*DQIPAPPGVHC
Trigger: GCAGTGAACTCCGGGTGGTGCTGGGATCTGATCCAACGAAAAACACTTGCCATTCTCACCGAAGAGAACTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCGAACTGGCTGCATCATaGTGCACAAAGACCTGTGTG +
Preference number: 4 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSELAAS*CTKTCV
Trigger: CACACAGGTCTTTGTGCATCATGATGCAGCCAGTTC...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ACTGTCAAGGGAATCATAGGACAAAGGACTGAATTACTTTTGGAGGCCCATGTGTCAGCCTTCTTGATGTaGGCCGCCTGGGCCGAGCTC +
Preference number: 4 (lower is better)
Translates to: TVKGIIGQRTELLLEAHVSAFLM*AAWAEL
Trigger: GAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGA...CACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GACCTGAATAAGAGAAACCCCAGCTATGTGCTAACTGGAGAAGAGAACTCCTCATCGCCGGTGCTGAACTaGTCAGGGAAGCTGCGGTTG +
Preference number: 4 (lower is better)
Translates to: DLNKRNPSYVLTGEENSSSPVLN*SGKLRL
Trigger: CAACCGCAGCTTCCCTGACCAGTTCAGCACCGGCGA...TGAGGAGTTCTCTTCTCCAGTTAGCACATAGCTGGGGTTTCTCTTATTCAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp CACACTATCTCCATGACAGTATGCCATCACAGGGCAGAGGCTTGGGCCGGAGCACACAGCGATAGTTTCTaGTTGGGTAGGTTCTGTGAT +
Preference number: 4 (lower is better)
Translates to: HTISMTVCHHRAEAWAGAHSDSF*LGRFCD
Trigger: ATCACAGAACCTACCCAACCAGAAACTATCGCTGTG...TGCTCCGGCCCAAGCCTCTGCCCTGTGATGGCATACTGTCATGGAGATAGTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCACGCTCTCGCCCATCTaGATTCAGAGAGGGAACAAT +
Preference number: 4 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSTLSPI*IQRGNN
Trigger: ATTGTTCCCTCTCTGAATCCAGATGGGCGAGAGCGT...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGACCAACACCTGGCGTaGCACCGTCTCGTCGCCGTG +
Preference number: 4 (lower is better)
Translates to: TLFLLRSREGRRLINSSRDQHLA*HRLVAV
Trigger: CACGGCGACGAGACGGTGTCACGCCAGGTGTTGGTC...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAACCACTGAGCCACCATaGAGATTTCCAGAAAGCACA +
Preference number: 4 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRTTEPP*RFPEST
Trigger: TGTGCTTTCTGGAAATCTTCATGGTGGCTCAGTGGT...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp TTTCACCTCTACTCATGGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCTGTGTGCCCAGTCTTTaGGGTGCAGTCTTTCTCTTG +
Preference number: 4 (lower is better)
Translates to: FHLYSWDIWCLHSKASEFCVPSL*GAVFLL
Trigger: CAAGAGAAAGACTGCACCTCAAAGACTGGGCACACA...GAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAGGCAATGGCCATAGGTaGCACTATAATCCTTCATGC +
Preference number: 4 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRGNGHR*HYNPSC
Trigger: GCATGAAGGATTATAGTGTCACCTATGGCCATTGCC...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAAGCAGATGCACCAAATaGTGCAAGCCGTTAGGATCA +
Preference number: 4 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRSRCTK*CKPLGS
Trigger: TGATCCTAACGGCTTGCATCATTTGGTGCATCTGCT...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp GACCTGAATAAGAGAAACCCCAGCTATGTGCTAACTGGAGAAGAGAACTCCTCAACCGTCTCGTCGCCGTaGATGTTACCCACCAGCTTC +
Preference number: 4 (lower is better)
Translates to: DLNKRNPSYVLTGEENSSTVSSP*MLPTSF
Trigger: GAAGCTGGTGGGTAACATGCACGGCGACGAGACGGT...TGAGGAGTTCTCTTCTCCAGTTAGCACATAGCTGGGGTTTCTCTTATTCAGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGACATCATCTGGTGACTTaGTGTACGTGGCAACTCCTT +
Preference number: 4 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRHHLVT*CTWQLL
Trigger: AAGGAGTTGCCACGTACAGCAAGTCACCAGATGATG...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCGGGTGGCATTTAATATaGCCCTACCATCTGTGGCAT +
Preference number: 4 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSGWHLI*PYHLWH
Trigger: ATGCCACAGATGGTAGGGGCATATTAAATGCCACCC...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACTCAGTGCTGGTGCTATaGCCCCTGCCTTTCTTTGAC +
Preference number: 4 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNSVLVL*PLPFFD
Trigger: GTCAAAGAAAGGCAGGGGGCATAGCACCAGCACTGA...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGATACCAGCCACTGAAATaGTTGCGTTCTCTAACCCAG +
Preference number: 4 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRYQPLK*LRSLTQ
Trigger: CTGGGTTAGAGAACGCAACCATTTCAGTGGCTGGTA...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 72 bp TATCTCCATGACAGTATGCCATCACAGGGCAGAGGCTaGGGCCGGAGCATCAAGTGTAGACATTTTGGATCC +
Preference number: 4 (lower is better)
Translates to: YLHDSMPSQGRG*GRSIKCRHFGS
Trigger: GGATCCAAAATGTCTACACTTGATGCTCCGGCCCAAGCCTCTGCCCTGTGATGGCATACTGTCATGGAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCTCATCTCCTGGACAATaGGGTTCGCCAGTTTTCATT +
Preference number: 4 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSSSPGQ*GSPVFI
Trigger: AATGAAAACTGGCGAACCCCATTGTCCAGGAGATGA...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCAAATTCTGGTTCACCTaGTTCATGGACACCTGGGTT +
Preference number: 4 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSKFWFT*FMDTWV
Trigger: AACCCAGGTGTCCATGAACCAGGTGAACCAGAATTT...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp TTTCACCTCTACTCATGGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCCAGTTCAGTTCCAACTaGAGCGTTTCCATGGATACC +
Preference number: 4 (lower is better)
Translates to: FHLYSWDIWCLHSKASEFQFSSN*SVSMDT
Trigger: GGTATCCATGGAAACGCTCCAGTTGGAACTGAACTG...GAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACGTGTCCGTTTCATCCTaGAACTCATGGCTTAGGAGG +
Preference number: 4 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNVSVSS*NSWLRR
Trigger: CCTCCTAAGCCATGAGTTCCAGGATGAAACGGACAC...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 72 bp CTTCCATCAACTAAGATCTCAACTTTACACAGCCACTaGGGTGCATTCCTCACCAAGTGTGGCCGAGTGACC +
Preference number: 4 (lower is better)
Translates to: LPSTKISTLHSH*GAFLTKCGRVT
Trigger: GGTCACTCGGCCACACTTGGTGAGGAATGCACCCAAGTGGCTGTGTAAAGTTGAGATCTTAGTTGATGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ACTGTCAAGGGAATCATAGGACAAAGGACTGAATTACTTTTGGAGGCCCATGTGGTGCAGTCTTTCTCTTaGGCACGCTCTCGCCCATCT +
Preference number: 4 (lower is better)
Translates to: TVKGIIGQRTELLLEAHVVQSFS*ARSRPS
Trigger: AGATGGGCGAGAGCGTGCTCAAGAGAAAGACTGCAC...CACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCAAGCAGGTGGGTACTTaGAGCAAGACAATTCTAATG +
Preference number: 4 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSKQVGT*SKTILM
Trigger: CATTAGAATTGTCTTGCTGCAAGTACCCACCTGCTT...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp CACACTATCTCCATGACAGTATGCCATCACAGGGCAGAGGCTTGGGCCGGAGCAATCAGGATTCATGGATaGCATAAGGTGAATTCTTGT +
Preference number: 4 (lower is better)
Translates to: HTISMTVCHHRAEAWAGAIRIHG*HKVNSC
Trigger: ACAAGAATTCACCTTATGCCATCCATGAATCCTGAT...TGCTCCGGCCCAAGCCTCTGCCCTGTGATGGCATACTGTCATGGAGATAGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp TTTCACCTCTACTCATGGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCGCGATAGTTTCTGGTTaGGTAGGTTCTGTGATTGGA +
Preference number: 4 (lower is better)
Translates to: FHLYSWDIWCLHSKASEFAIVSG*VGSVIG
Trigger: TCCAATCACAGAACCTACCCAACCAGAAACTATCGC...GAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp CACACTATCTCCATGACAGTATGCCATCACAGGGCAGAGGCTTGGGCCGGAGCACAGTTCATTCTCAAATaGATATTTCACACAACCGAG +
Preference number: 4 (lower is better)
Translates to: HTISMTVCHHRAEAWAGAQFILK*IFHTTE
Trigger: CTCGGTTGTGTGAAATATCCATTTGAGAATGAACTG...TGCTCCGGCCCAAGCCTCTGCCCTGTGATGGCATACTGTCATGGAGATAGTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCTTGCTCCCAGTACTTTaGCAGTTCATTCTCAAATGG +
Preference number: 4 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSLLPVL*QFILKW
Trigger: CCATTTGAGAATGAACTGCCAAAGTACTGGGAGCAA...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp TTTCACCTCTACTCATGGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCAATTATTTGGGCAACTaGGCTGACCCATGTGCATTG +
Preference number: 4 (lower is better)
Translates to: FHLYSWDIWCLHSKASEFNYLGN*ADPCAL
Trigger: CAATGCACATGGGTCAGCCCAGTTGCCCAAATAATT...GAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACCAAGGACAAATCCTTTaGCACCCTGATGAACCTGTT +
Preference number: 4 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNQGQIL*HPDEPV
Trigger: AACAGGTTCATCAGGGTGTCAAAGGATTTGTCCTTG...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACGAATCAAGTTTTCGATaGTGGCTTTGGTCTCAGGCT +
Preference number: 4 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNESSFR*WLWSQA
Trigger: AGCCTGAGACCAAAGCCATCATCGAAAACTTGATTC...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGTTTGGGCAACTGGGCTaGCCCATGTGCATTGATGGA +
Preference number: 4 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLFGQLG*PMCIDG
Trigger: TCCATCAATGCACATGGGTCAGCCCAGTTGCCCAAA...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp TTTCACCTCTACTCATGGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCAGGTATGTTCTCATCTaGATTATTTGGGCAACTGGG +
Preference number: 4 (lower is better)
Translates to: FHLYSWDIWCLHSKASEFRYVLI*IIWATG
Trigger: CCCAGTTGCCCAAATAATTCAGATGAGAACATACCT...GAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAGGAACAAGTAATCTGTaGAAATCACCAAATCTTCCC +
Preference number: 4 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRGTSNL*KSPNLP
Trigger: GGGAAGATTTGGTGATTTCCACAGATTACTTGTTCC...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ACTGTCAAGGGAATCATAGGACAAAGGACTGAATTACTTTTGGAGGCCCATGTGGAGCTGAGCTGCACTTaGGAAGTAGCAGCAGCTTGT +
Preference number: 4 (lower is better)
Translates to: TVKGIIGQRTELLLEAHVELSCT*EVAAAC
Trigger: ACAAGCTGCTGCTACTTCCCAAGTGCAGCTCAGCTC...CACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGCCGTGGACTCCTTTGTaGACCTCCACCAGCATGCTA +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRPWTPL*TSTSML
Trigger: TAGCATGCTGGTGGAGGTCCACAAAGGAGTCCACGG...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGTGCTGCCGCAGCCGGTaGAAGCCATCTTTGTGTCTA +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRCCRSR*KPSLCL
Trigger: TAGACACAAAGATGGCTTCCACCGGCTGCGGCAGCA...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGCTCGGGCAGATGCTGTaGTTTTGTATGTCCCTGGGA +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRLGQML*FCMSLG
Trigger: TCCCAGGGACATACAAAATCACAGCATCTGCCCGAG...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACCTTCTTAGAGCCAGTTaGCATCATGCGAATTTCATC +
Preference number: 4 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNLLRAS*HHANFI
Trigger: GATGAAATTCGCATGATGTCAACTGGCTCTAAGAAG...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGGCCCAGTCTTTGAGGTaGAGTCTTTCTCTTGAGCAC +
Preference number: 4 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLAQSLR*SLSLEH
Trigger: GTGCTCAAGAGAAAGACTGCACCTCAAAGACTGGGC...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp GACCCAGCTTGGAAACAGGTAGAAAGACAAATACGGAAGCCCGTTTATTCCATTCACTATAATCCTTCATaGTGCCCAGGTGACTGTGCC +
Preference number: 4 (lower is better)
Translates to: DPAWKQVERQIRKPVYSIHYNPS*CPGDCA
Trigger: GGCACAGTCACCTGGGCAGCATGAAGGATTATAGTG...AATGGAATAAACGGGCTTCCGTATTTGTCTTTCTACCTGTTTCCAAGCTGGGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAATTGAGTACAATGACTaGTTTCGAGATTGGTTTACC +
Preference number: 4 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRIEYND*FRDWFT
Trigger: GGTAAACCAATCTCGAAAGCAGTCATTGTACTCAAT...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 72 bp CCTATGGGTTTTACCAGGATAAGACAGACAACGTCCTaGCTTCTGCTCCATCTCCCTTTCACCTCTACTCAT +
Preference number: 4 (lower is better)
Translates to: PMGFTRIRQTTS*LLLHLPFTSTH
Trigger: ATGAGTAGAGGTGAAAGGGAGATGGAGCAGAAGCAAGGACGTTGTCTGTCTTATCCTGGTAAAACCCATAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACAAGACAATTCTAATGTaGTCTCAAAACAGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNKTILM*SQNSWP
Trigger: GGGCCAACTGTTTTGAGATCACATTAGAATTGTCTT...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGCATTCTTGTCGAAGCTaGGAAGCAGGTGGGTACTTG +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRHSCRS*EAGGYL
Trigger: CAAGTACCCACCTGCTTCTCAGCTTCGACAAGAATG...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTTTCTGCCAACTACACTaGTCGAATCTCCTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFFCQLH*SNLLPG
Trigger: CCCAGGAAGGAGATTCGATCAGTGTAGTTGGCAGAA...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
46% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGTACAGCATCATCTGGTaGCTTGCTGTACGTGGCAAC +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRYSIIW*LAVRGN
Trigger: GTTGCCACGTACAGCAAGTCACCAGATGATGCTGTA...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp GACCCAGCTTGGAAACAGGTAGAAAGACAAATACGGAAGCCCGTTTATTCCATTAGCTTGTGTATACCGTaGTTTCTGGGCAATGGCCAT +
Preference number: 4 (lower is better)
Translates to: DPAWKQVERQIRKPVYSISLCIP*FLGNGH
Trigger: ATGGCCATTGCCCAGAAATCACGGTATACACAAGCT...AATGGAATAAACGGGCTTCCGTATTTGTCTTTCTACCTGTTTCCAAGCTGGGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAAAGACCTGTGTGTGCTaGTGCTGGTACCCATCAGCA +
Preference number: 4 (lower is better)
Translates to: TLFLLRSREGRRLINSSRKTCVC*CWYPSA
Trigger: TGCTGATGGGTACCAGCAGCAGCACACACAGGTCTT...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGGTCTTTAGGCTGAATTaGCTGATGGGAGGATGGTGT +
Preference number: 4 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLVFRLN*LMGGWC
Trigger: ACACCATCCTCCCATCAGCCAATTCAGCCTAAAGAC...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GACCTGAATAAGAGAAACCCCAGCTATGTGCTAACTGGAGAAGAGAACTCCTCAACTGGAGCGTTTCCATaGATACCAGCAACAAAACGA +
Preference number: 4 (lower is better)
Translates to: DLNKRNPSYVLTGEENSSTGAFP*IPATKR
Trigger: TCGTTTTGTTGCTGGTATCCATGGAAACGCTCCAGT...TGAGGAGTTCTCTTCTCCAGTTAGCACATAGCTGGGGTTTCTCTTATTCAGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGGTATACCGTGATTTCTaGGCAATGGCCATAGGTGAC +
Preference number: 4 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLVYRDF*AMAIGD
Trigger: GTCACCTATGGCCATTGCCCAGAAATCACGGTATAC...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 72 bp TTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTaGCCTGGTACGTATACAGGGAGATATGCAAACCGT +
Preference number: 4 (lower is better)
Translates to: FLLQCLPRRAVI*PGTYTGRYANR
Trigger: ACGGTTTGCATATCTCCCTGTATACGTACCAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTAGGACGAGCTTAACATaGAGCCTTCCAAGCCATTCT +
Preference number: 4 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFRTSLT*SLPSHS
Trigger: AGAATGGCTTGGAAGGCTTCATGTTAAGCTCGTCCT...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGGCTTTGGTCTCAGGCTaGGAAGCATTACTTGTAAAG +
Preference number: 4 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLALVSG*EALLVK
Trigger: CTTTACAAGTAATGCTTCTCAGCCTGAGACCAAAGC...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ACTGTCAAGGGAATCATAGGACAAAGGACTGAATTACTTTTGGAGGCCCATGTGTACCACAGAACTGGCTaGATCATGATGCACAAAGAC +
Preference number: 4 (lower is better)
Translates to: TVKGIIGQRTELLLEAHVYHRTG*IMMHKD
Trigger: GTCTTTGTGCATCATGATGCAGCCAGTTCTGTGGTA...CACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTAAGCTGAGAAGCAGGTaGGTACTTGCAGCAAGACAA +
Preference number: 4 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFKLRSR*VLAARQ
Trigger: TTGTCTTGCTGCAAGTACCCACCTGCTTCTCAGCTT...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GACCCAGCTTGGAAACAGGTAGAAAGACAAATACGGAAGCCCGTTTATTCCATTGTCCTGTCAACCAATTaGGTAACAACTGGGTTCCTT +
Preference number: 4 (lower is better)
Translates to: DPAWKQVERQIRKPVYSIVLSTN*VTTGFL
Trigger: AAGGAACCCAGTTGTTACCCAATTGGTTGACAGGAC...AATGGAATAAACGGGCTTCCGTATTTGTCTTTCTACCTGTTTCCAAGCTGGGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ACTGTCAAGGGAATCATAGGACAAAGGACTGAATTACTTTTGGAGGCCCATGTGTACCACGAGTTCCCTTaGCAAACCAAATATCCGGTT +
Preference number: 4 (lower is better)
Translates to: TVKGIIGQRTELLLEAHVYHEFP*QTKYPV
Trigger: AACCGGATATTTGGTTTGCCAAGGGAACTCGTGGTA...CACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGTCATCCTGGAACTCATaGCTTAGGAGGGACTTCTTA +
Preference number: 4 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLSSWNS*LRRDFL
Trigger: TAAGAAGTCCCTCCTAAGCCATGAGTTCCAGGATGA...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp ACTGTCAAGGGAATCATAGGACAAAGGACTGAATTACTTTTGGAGGCCCATGTGCCCGTTGTGATGTTATaGTTAATACCAGCCACTGAA +
Preference number: 4 (lower is better)
Translates to: TVKGIIGQRTELLLEAHVPVVML*LIPATE
Trigger: TTCAGTGGCTGGTATTAATCATAACATCACAACGGG...CACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAATACCCTCGGGCAGATaGTGTGATTTTGTATGTCCC +
Preference number: 4 (lower is better)
Translates to: TLFLLRSREGRRLINSSRIPSGR*CDFVCP
Trigger: GGGACATACAAAATCACAGCATCTGCCCGAGGGTAT...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GACCCAGCTTGGAAACAGGTAGAAAGACAAATACGGAAGCCCGTTTATTCCATTATATGTTGGGCTTATTaGAGATCTCCAGGGACCAAA +
Preference number: 4 (lower is better)
Translates to: DPAWKQVERQIRKPVYSIICWAY*RSPGTK
Trigger: TTTGGTCCCTGGAGATCTCCAATAAGCCCAACATAT...AATGGAATAAACGGGCTTCCGTATTTGTCTTTCTACCTGTTTCCAAGCTGGGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 72 bp GAGAACTGTGAACATCACCGATCCATCACATTGTTTTaGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAAC +
Preference number: 4 (lower is better)
Translates to: ENCEHHRSITLF*LRSREGRRLIN
Trigger: GTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGTGATGGATCGGTGATGTTCACAGTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTTCCAGGTCTTTGCCATaGGCATTTGTGTGCCCAGTC +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSSRSLP*AFVCPV
Trigger: GACTGGGCACACAAATGCTCATGGCAAAGACCTGGA...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTAGGCAATGGAAAGACTaGAGTCCTGCTTTTGAATCA +
Preference number: 4 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFRQWKD*SPAFES
Trigger: TGATTCAAAAGCAGGACTTCAGTCTTTCCATTGCCT...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGAGTCCAGTGGTCTTATaGTCGGGAGAATCATCAAAA +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRSPVVL*SGESSK
Trigger: TTTTGATGATTCTCCCGAGCATAAGACCACTGGACT...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTCTCGTCTTCATCTCCTaGACAATGGGGTTCGCCAGT +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSLVFIS*TMGFAS
Trigger: ACTGGCGAACCCCATTGTCCAGGAGATGAAGACGAG...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGTGGTTCATGGACACCTaGGTTATCAGATATCTCCAT +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRWFMDT*VIRYLH
Trigger: ATGGAGATATCTGATAACCCAGGTGTCCATGAACCA...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGATCGAATCTCCTTCCTaGGACTTTTCATATCCATCA +
Preference number: 4 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLIESPS*DFSYPS
Trigger: TGATGGATATGAAAAGTCCCAGGAAGGAGATTCGAT...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGTTGCAAGGTCTACCTTaGAACATCTGCGAATTTTCC +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRLQGLP*NICEFS
Trigger: GGAAAATTCGCAGATGTTCCAAGGTAGACCTTGCAA...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GACCCAGCTTGGAAACAGGTAGAAAGACAAATACGGAAGCCCGTTTATTCCATTAAGTCTTTGTATGAATaGTATCGATACAGAGCCAGG +
Preference number: 4 (lower is better)
Translates to: DPAWKQVERQIRKPVYSIKSLYE*YRYRAR
Trigger: CCTGGCTCTGTATCGATACCATTCATACAAAGACTT...AATGGAATAAACGGGCTTCCGTATTTGTCTTTCTACCTGTTTCCAAGCTGGGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTGAAAGTGCTATTTGCTaGAATACAGCATCATCTGGT +
Preference number: 4 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFESAIC*NTASSG
Trigger: ACCAGATGATGCTGTATTTCAGCAAATAGCACTTTC...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTCCCCCTGCCTTTCTTTaGCTCATTGTTTGCATCTGC +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSPPAFL*LIVCIC
Trigger: GCAGATGCAAACAATGAGTCAAAGAAAGGCAGGGGG...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GACCTGAATAAGAGAAACCCCAGCTATGTGCTAACTGGAGAAGAGAACTCCTCAAATATACTTAAATTCTaGTTCACCTGGTTCATGGAC +
Preference number: 4 (lower is better)
Translates to: DLNKRNPSYVLTGEENSSNILKF*FTWFMD
Trigger: GTCCATGAACCAGGTGAACCAGAATTTAAGTATATT...TGAGGAGTTCTCTTCTCCAGTTAGCACATAGCTGGGGTTTCTCTTATTCAGGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGTTCCACTGTCTGCACTaGTTTATCATACGGATATGT +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRFHCLH*FIIRIC
Trigger: ACATATCCGTATGATAAACCAGTGCAGACAGTGGAA...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGACTATTACCACAGAACTaGCTGCATCATGATGCACAA +
Preference number: 4 (lower is better)
Translates to: TLFLLRSREGRRLINSSRLLPQN*LHHDAQ
Trigger: TTGTGCATCATGATGCAGCCAGTTCTGTGGTAATAG...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTATAGCTTGCTACCACTaGGCCACCATGAAGATTTCC +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSIACYH*ATMKIS
Trigger: GGAAATCTTCATGGTGGCTCAGTGGTAGCAAGCTAT...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTATGGATGGCATAAGGTaGATTCTTGTGCTGCGAACC +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSMDGIR*ILVLRT
Trigger: GGTTCGCAGCACAAGAATTCACCTTATGCCATCCAT...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTGGTTCACCTGGTTCATaGACACCTGGGTTATCAGAT +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSGSPGS*TPGLSD
Trigger: ATCTGATAACCCAGGTGTCCATGAACCAGGTGAACC...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTCAATTGGGTAACAACTaGGTTCCTTTTGTAATTCAG +
Preference number: 4 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFQLGNN*VPFVIQ
Trigger: CTGAATTACAAAAGGAACCCAGTTGTTACCCAATTG...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAAGAGGCATAAGCTTTTaGCAAGTATCTAAAGACTTC +
Preference number: 4 (lower is better)
Translates to: TLFLLRSREGRRLINSSRRGISF*QVSKDF
Trigger: GAAGTCTTTAGATACTTGGCAAAAGCTTATGCCTCT...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR GCA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGAGCCAGTTGACATCATaGGAATTTCATCTTCATATT +
Preference number: 4 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRSQLTS*EFHLHI
Trigger: AATATGAAGATGAAATTCGCATGATGTCAACTGGCT...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGATTTGTAAGTGGTCACTaGGTGATTAATTTCAGCAAC +
Preference number: 4 (lower is better)
Translates to: TLFLLRSREGRRLINSSRFVSGH*VINFSN
Trigger: GTTGCTGAAATTAATCACCCAGTGACCACTTACAAA...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTTGCAGAGGTATTCAATaGGATTCAATAGCAGCTCTC +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSCRGIQ*DSIAAL
Trigger: GAGAGCTGCTATTGAATCTCATTGAATACCTCTGCA...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTATTGTTTGCATCTGCTaGAGATCGAACAAGGGTGAA +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSIVCIC*RSNKGE
Trigger: TTCACCCTTGTTCGATCTTCAGCAGATGCAAACAAT...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGACCTTTAATTCCAATGTaGACCTTTTCAATCAATGTG +
Preference number: 4 (lower is better)
Translates to: TLFLLRSREGRRLINSSRPLIPM*TFSINV
Trigger: CACATTGATTGAAAAGGTCCACATTGGAATTAAAGG...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTCAGGTTCTGATATGTTaGGCTTATTGGAGATCTCCA +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSQVLIC*AYWRSP
Trigger: TGGAGATCTCCAATAAGCCCAACATATCAGAACCTG...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
3UTR CAA 72 bp AGTGAGTTCTCCTCTAGGATAAAGATATCTAGAACTTaGCTAAACCTTACAAGAGAGGTAGTAAAATCCTGC +
Preference number: 4 (lower is better)
Translates to: SEFSSRIKISRT*LNLTREVVKSC
Trigger: GCAGGATTTTACTACCTCTCTTGTAAGGTTTAGCAAAGTTCTAGATATCTTTATCCTAGAGGAGAACTCACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR TCA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTCCGTTTGTTATCCCATaGGGAAAATACTCATTGAGA +
Preference number: 4 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSPFVIP*GKYSLR
Trigger: TCTCAATGAGTATTTTCCTCATGGGATAACAAACGG...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS GCA 90 bp CGTGACACCGTCTCGTCGCCGTGCATGTTACCCACCAGCTTCACCTaGGGCCGGCCGGGCAGCAGCGGCCCCGCGGCGTCCAGCCCCGCG +
Preference number: 5 (lower is better)
Translates to: RDTVSSPCMLPTSFT*GRPGSSGPAASSPA
Trigger: CGCGGGGCTGGACGCCGCGGGGCCGCTGCTGCCCGGCCGGCCGCAGGTGAAGCTGGTGGGTAACATGCACGGCGACGAGACGGTGTCACG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp AGCCATCCGGGTTCAGGCTGGGCAGCAAATACACGTCGGTGGTGTTaGGCAGGCGGACCAGGCGCGGGTCCCCGCGGCGGTAGCCCGACG +
Preference number: 5 (lower is better)
Translates to: SHPGSGWAANTRRWC*AGGPGAGPRGGSPT
Trigger: CGTCGGGCTACCGCCGCGGGGACCCGCGCCTGGTCCGCCTGCTCAACACCACCGACGTGTATTTGCTGCCCAGCCTGAACCCGGATGGCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp CCGCCTCGGAGCCGCCAACGGTTGTCGTGGTCGCCTCAGCCTTCTTaGTGTGCGCCGCCTGGGCCGAGCTCCTCAGTAGCAGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: PPRSRQRLSWSPQPS*CAPPGPSSSVAAAA
Trigger: TGCTGCTGCTGCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGAGGCGACCACGACAACCGTTGGCGGCTCCGAGGCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS GCA 90 bp TCGGAGCCGCCAACGGTTGTCGTGGTCGCCTCAGCCTTCTTGATGTaGGCCGCCTGGGCCGAGCTCCTCAGTAGCAGCAGCAGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: SEPPTVVVVASAFLM*AAWAELLSSSSSSS
Trigger: GCTGCTGCTGCTGCTGCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGAGGCGACCACGACAACCGTTGGCGGCTCCGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp CCAACGGTTGTCGTGGTCGCCTCAGCCTTCTTGATGTGCGCCGCCTaGGCCGAGCTCCTCAGTAGCAGCAGCAGCAGCAGCAGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: PTVVVVASAFLMCAA*AELLSSSSSSSSGG
Trigger: GCCACCGCTGCTGCTGCTGCTGCTGCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGAGGCGACCACGACAACCGTTGG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp GTAGCCCGACGCCAGCTCGCGGGCCAGGTAGACCAACACCTGGCGTaGCACCGTCTCGTCGCCGTGCATGTTACCCACCAGCTTCACCTG +
Preference number: 5 (lower is better)
Translates to: VARRQLAGQVDQHLA*HRLVAVHVTHQLHL
Trigger: CAGGTGAAGCTGGTGGGTAACATGCACGGCGACGAGACGGTGTCACGCCAGGTGTTGGTCTACCTGGCCCGCGAGCTGGCGTCGGGCTAC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp ACCTCCGGCACCTCATCCAGGGAAGGTGGCTCGCCGGTGCTGAACTaGTCAGGGAAGCTGCGGTTGAGGTCGCGGCCTCGGCTGTTGTCA +
Preference number: 5 (lower is better)
Translates to: TSGTSSREGGSPVLN*SGKLRLRSRPRLLS
Trigger: TGACAACAGCCGAGGCCGCGACCTCAACCGCAGCTTCCCTGACCAGTTCAGCACCGGCGAGCCACCTTCCCTGGATGAGGTGCCGGAGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp GAAGATTTCCAGAAAGCACAAACTTGTTCCTGCGGATCCAGTCGATaGGGGCGCGCACCTCCGGCACCTCATCCAGGGAAGGTGGCTCGC +
Preference number: 5 (lower is better)
Translates to: EDFQKAQTCSCGSSR*GRAPPAPHPGKVAR
Trigger: GCGAGCCACCTTCCCTGGATGAGGTGCCGGAGGTGCGCGCCCTCATCGACTGGATCCGCAGGAACAAGTTTGTGCTTTCTGGAAATCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAGGTGCAGTCTTTCTCTaGAGCACGCTCTCGCCCATC +
Preference number: 5 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRGAVFL*STLSPI
Trigger: GATGGGCGAGAGCGTGCTCAAGAGAAAGACTGCACC...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp ATCATAAGGGTAGTTAACCACCAGGGAACCCCCGTGCAGATTGGCTaGCAGCACAAACGGGTAGGCCTTCACCCAGCTCATCACAGCGAT +
Preference number: 5 (lower is better)
Translates to: IIRVVNHQGTPVQIG*QHKRVGLHPAHHSD
Trigger: ATCGCTGTGATGAGCTGGGTGAAGGCCTACCCGTTTGTGCTGTCAGCCAATCTGCACGGGGGTTCCCTGGTGGTTAACTACCCTTATGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp CACACTATCTCCATGACAGTATGCCATCACAGGGCAGAGGCTTGGGCCGGAGCAGCCCCCTGCCTTTCTTaGACTCATTGTTTGCATCTG +
Preference number: 5 (lower is better)
Translates to: HTISMTVCHHRAEAWAGAAPCLS*THCLHL
Trigger: CAGATGCAAACAATGAGTCAAAGAAAGGCAGGGGGC...TGCTCCGGCCCAAGCCTCTGCCCTGTGATGGCATACTGTCATGGAGATAGTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACGGAGCTGAGCTGCACTaGGGAAGTAGCAGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNGAELH*GSSSSL
Trigger: CAAGCTGCTGCTACTTCCCAAGTGCAGCTCAGCTCC...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp GTCTGTGTCCAGGTCTTTGCCATGAGCATTTGTGTGCCCAGTCTTTaGGGTGCAGTCTTTCTCTTGAGCACGCTCTCGCCCATCTGGATT +
Preference number: 5 (lower is better)
Translates to: VCVQVFAMSICVPSL*GAVFLLSTLSPIWI
Trigger: AATCCAGATGGGCGAGAGCGTGCTCAAGAGAAAGACTGCACCTCAAAGACTGGGCACACAAATGCTCATGGCAAAGACCTGGACACAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGACTAAGGAGAGACTTCTaGTTCTCTGCCCATAGGGCA +
Preference number: 5 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRLRRDF*FSAHRA
Trigger: TGCCCTATGGGCAGAGAACAAGAAGTCTCTCCTTAG...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp CAAAGACCTGTGTGTGCTGCTGCTGGTACCCATCAGCAATTGCGTTaGTGTTATGGACTCCAGGAGCTAGGAGCACATGGAAATAACCCC +
Preference number: 5 (lower is better)
Translates to: QRPVCAAAGTHQQLR*CYGLQELGAHGNNP
Trigger: GGGGTTATTTCCATGTGCTCCTAGCTCCTGGAGTCCATAACATCAACGCAATTGCTGATGGGTACCAGCAGCAGCACACACAGGTCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCAGCGATAGTTTCTGGTaGGGTAGGTTCTGTGATTGG +
Preference number: 5 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSSDSFW*GRFCDW
Trigger: CCAATCACAGAACCTACCCAACCAGAAACTATCGCT...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp CGCGCCATTCGTGATCCCATCTTTGAAAGTCTCGTCTTCATCTCCTaGACAATGGGGTTCGCCAGTTTTCATTATAGGGTGGTTAGAGGC +
Preference number: 5 (lower is better)
Translates to: RAIRDPIFESLVFIS*TMGFASFHYRVVRG
Trigger: GCCTCTAACCACCCTATAATGAAAACTGGCGAACCCCATTGTCCAGGAGATGAAGACGAGACTTTCAAAGATGGGATCACGAATGGCGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp ATGGTGGTGGTGAAAGTCTTTAGGCTGAATTGGCTGATGGGAGGATaGTGTTCCAGGAGGGATATTAGGAACAGCAACTGTGCCAGGAGT +
Preference number: 5 (lower is better)
Translates to: MVVVKVFRLNWLMGG*CSRRDIRNSNCARS
Trigger: ACTCCTGGCACAGTTGCTGTTCCTAATATCCCTCCTGGAACACCATCCTCCCATCAGCCAATTCAGCCTAAAGACTTTCACCACCACCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp AGCTGCACTTGGGAAGTAGCAGCAGCTTGTGTATACCGTGATTTCTaGGCAATGGCCATAGGTGACACTATAATCCTTCATGCTGCCCAG +
Preference number: 5 (lower is better)
Translates to: SCTWEVAAACVYRDF*AMAIGDTIILHAAQ
Trigger: CTGGGCAGCATGAAGGATTATAGTGTCACCTATGGCCATTGCCCAGAAATCACGGTATACACAAGCTGCTGCTACTTCCCAAGTGCAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp CACACTATCTCCATGACAGTATGCCATCACAGGGCAGAGGCTTGGGCCGGAGCATACATAATTGTAATCTaGCATACCACCTTCCACGTC +
Preference number: 5 (lower is better)
Translates to: HTISMTVCHHRAEAWAGAYIIVI*HTTFHV
Trigger: GACGTGGAAGGTGGTATGCAAGATTACAATTATGTA...TGCTCCGGCCCAAGCCTCTGCCCTGTGATGGCATACTGTCATGGAGATAGTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGAATTATTCTCCCATTCTaGTCGAAGCTGAGAAGCAGG +
Preference number: 5 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRIILPF*SKLRSR
Trigger: CCTGCTTCTCAGCTTCGACAAGAATGGGAGAATAAT...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp CCCAGCACCACCCGGAGTTCACTGCTACACCAAAGCTGGTGTAGTTACTTGAGACGGTTTAGGTCAAAGTaGTTGCTGTTGTTTCTGCCA +
Preference number: 5 (lower is better)
Translates to: PSTTRSSLLHQSWCSYLRRFRSK*LLLFLP
Trigger: TGGCAGAAACAACAGCAACAACTTTGACCTAAACCG...TCTCAAGTAACTACACCAGCTTTGGTGTAGCAGTGAACTCCGGGTGGTGCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp ATTGGTTTACCAGCCTTGTCTTTTACTAACCCGTGGACTCCTTTGTaGACCTCCACCAGCATGCTAAGGAGAGACTTCTTGTTCTCTGCC +
Preference number: 5 (lower is better)
Translates to: IGLPALSFTNPWTPL*TSTSMLRRDFLFSA
Trigger: GGCAGAGAACAAGAAGTCTCTCCTTAGCATGCTGGTGGAGGTCCACAAAGGAGTCCACGGGTTAGTAAAAGACAAGGCTGGTAAACCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp ACTGCTTTCGAGATTGGTTTACCAGCCTTGTCTTTTACTAACCCGTaGACTCCTTTGTGGACCTCCACCAGCATGCTAAGGAGAGACTTC +
Preference number: 5 (lower is better)
Translates to: TAFEIGLPALSFTNP*TPLWTSTSMLRRDF
Trigger: GAAGTCTCTCCTTAGCATGCTGGTGGAGGTCCACAAAGGAGTCCACGGGTTAGTAAAAGACAAGGCTGGTAAACCAATCTCGAAAGCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp TTTCACCTCTACTCATGGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCTTGTTACAGCCTCAGTaGAACCAGGCATTACTGACA +
Preference number: 5 (lower is better)
Translates to: FHLYSWDIWCLHSKASEFLLQPQ*NQALLT
Trigger: TGTCAGTAATGCCTGGTTCAACTGAGGCTGTAACAA...GAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp TTTCACCTCTACTCATGGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCCTTGCAAGGTCTACCTaGGAACATCTGCGAATTTTC +
Preference number: 5 (lower is better)
Translates to: FHLYSWDIWCLHSKASEFLARST*EHLRIF
Trigger: GAAAATTCGCAGATGTTCCAAGGTAGACCTTGCAAG...GAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp GACCTGAATAAGAGAAACCCCAGCTATGTGCTAACTGGAGAAGAGAACTCCTCACTGACGGTCACGTTCTaGGTGACAGGGTTATACCCT +
Preference number: 5 (lower is better)
Translates to: DLNKRNPSYVLTGEENSSLTVTF*VTGLYP
Trigger: AGGGTATAACCCTGTCACCAAGAACGTGACCGTCAG...TGAGGAGTTCTCTTCTCCAGTTAGCACATAGCTGGGGTTTCTCTTATTCAGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp TCTGCCAGAGCCAAGAGCAGTTCAGTTCCAACTGGAGCGTTTCCATaGATACCAGCAACAAAACGAATCTTCGGTTCTTCAGGTTCTGAT +
Preference number: 5 (lower is better)
Translates to: SARAKSSSVPTGAFP*IPATKRIFGSSGSD
Trigger: ATCAGAACCTGAAGAACCGAAGATTCGTTTTGTTGCTGGTATCCATGGAAACGCTCCAGTTGGAACTGAACTGCTCTTGGCTCTGGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp CAGGCAAAGAAATTCTGCCAGAGCCAAGAGCAGTTCAGTTCCAACTaGAGCGTTTCCATGGATACCAGCAACAAAACGAATCTTCGGTTC +
Preference number: 5 (lower is better)
Translates to: QAKKFCQSQEQFSSN*SVSMDTSNKTNLRF
Trigger: GAACCGAAGATTCGTTTTGTTGCTGGTATCCATGGAAACGCTCCAGTTGGAACTGAACTGCTCTTGGCTCTGGCAGAATTTCTTTGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTTACACGTCGGTGGTGTaGAGCAGGCGGACCAGGCGC +
Preference number: 5 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSYTSVV*SRRTRR
Trigger: GCGCCTGGTCCGCCTGCTCAACACCACCGACGTGTA...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACTCACATACAGTTCTCTaGACTCTACGGATTTCCCCA +
Preference number: 5 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNSHTVL*TLRISP
Trigger: TGGGGAAATCCGTAGAGTCAAGAGAACTGTATGTGA...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp GGACACCATGACATGTTCATAGCCAAGAAGCTTCTGAGAGAGCAGGGACCAAACATTGGTTTACCAGCCTaGTCTTTTACTAACCCGTGG +
Preference number: 5 (lower is better)
Translates to: GHHDMFIAKKLLREQGPNIGLPA*SFTNPW
Trigger: CCACGGGTTAGTAAAAGACAAGGCTGGTAAACCAAT...GTTTGGTCCCTGCTCTCTCAGAAGCTTCTTGGCTATGAACATGTCATGGTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGCAGCCACTGAAATGGTaGCGTTCTCTAACCCAGAGC +
Preference number: 5 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRQPLKW*RSLTQS
Trigger: GCTCTGGGTTAGAGAACGCAACCATTTCAGTGGCTG...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGCTTTGCCATGAGCATTaGTGTGCCCAGTCTTTGAGG +
Preference number: 5 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLLCHEH*CAQSLR
Trigger: CCTCAAAGACTGGGCACACAAATGCTCATGGCAAAG...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ATGCTGGGGACAGGTGGAAATGAATGGAGTATTGAGCCGTGGTTCCTGGTGAGCACTGAAGTCCTGCTTTaGAATCAAGTTTTCGATGAT +
Preference number: 5 (lower is better)
Translates to: MLGTGGNEWSIEPWFLVSTEVLL*NQVFDD
Trigger: ATCATCGAAAACTTGATTCAAAAGCAGGACTTCAGT...GCTCACCAGGAACCACGGCTCAATACTCCATTCATTTCCACCTGTCCCCAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS GCA 90 bp TTGGGTAACAACTGGGTTCCTTTTGTAATTCAGGCAAAGAAATTCTaGCAGAGCCAAGAGCAGTTCAGTTCCAACTGGAGCGTTTCCATG +
Preference number: 5 (lower is better)
Translates to: LGNNWVPFVIQAKKF*QSQEQFSSNWSVSM
Trigger: CATGGAAACGCTCCAGTTGGAACTGAACTGCTCTTGGCTCTGGCAGAATTTCTTTGCCTGAATTACAAAAGGAACCCAGTTGTTACCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS GCA 90 bp AAATATCCGGTTATCTGTATCAAAGACTATTACCACAGAACTGGCTaGATCATGATGCACAAAGACCTGTGTGTGCTGCTGCTGGTACCC +
Preference number: 5 (lower is better)
Translates to: KYPVICIKDYYHRTG*IMMHKDLCVLLLVP
Trigger: GGGTACCAGCAGCAGCACACACAGGTCTTTGTGCATCATGATGCAGCCAGTTCTGTGGTAATAGTCTTTGATACAGATAACCGGATATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGCATCAAAAGGATAGCTaGCTACCACTGAGCCACCAT +
Preference number: 5 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLHQKDS*LPLSHH
Trigger: ATGGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATG...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGCATCATCTGGTGACTaGCTGTACGTGGCAACTCCT +
Preference number: 5 (lower is better)
Translates to: TLFLLRSREGRRLINSSRASSGD*LYVATP
Trigger: AGGAGTTGCCACGTACAGCAAGTCACCAGATGATGC...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTGCAGATGCTGTGATTTaGTATGTCCCTGGGACCAAG +
Preference number: 5 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFADAVI*YVPGTK
Trigger: CTTGGTCCCAGGGACATACAAAATCACAGCATCTGC...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp GACCTGAATAAGAGAAACCCCAGCTATGTGCTAACTGGAGAAGAGAACTCCTCATCAGGTTCTGATATGTaGGGCTTATTGGAGATCTCC +
Preference number: 5 (lower is better)
Translates to: DLNKRNPSYVLTGEENSSSGSDM*GLLEIS
Trigger: GGAGATCTCCAATAAGCCCAACATATCAGAACCTGA...TGAGGAGTTCTCTTCTCCAGTTAGCACATAGCTGGGGTTTCTCTTATTCAGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp TTTCACCTCTACTCATGGGACATCTGGTGCCTCCACAGCAAAGCCAGTGAGTTCTGCTTTAAAGTTTCTTaGTTTTCCACTGTCTGCACT +
Preference number: 5 (lower is better)
Translates to: FHLYSWDIWCLHSKASEFCFKVS*FSTVCT
Trigger: AGTGCAGACAGTGGAAAACAAAGAAACTTTAAAGCA...GAACTCACTGGCTTTGCTGTGGAGGCACCAGATGTCCCATGAGTAGAGGTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp CAAAACGAATCTTCGGTTCTTCAGGTTCTGATATGTTGGGCTTATTaGAGATCTCCAGGGACCAAATGTGACGATACTCAACACTCTGTC +
Preference number: 5 (lower is better)
Translates to: QNESSVLQVLICWAY*RSPGTKCDDTQHSV
Trigger: GACAGAGTGTTGAGTATCGTCACATTTGGTCCCTGGAGATCTCCAATAAGCCCAACATATCAGAACCTGAAGAACCGAAGATTCGTTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp GCATCACTCCTCCAGGTATGTTCTCATCTGAATTATTTGGGCAACTaGGCTGACCCATGTGCATTGATGGATGGTTATTTGCATAAAGAG +
Preference number: 5 (lower is better)
Translates to: ASLLQVCSHLNYLGN*ADPCALMDGYLHKE
Trigger: CTCTTTATGCAAATAACCATCCATCAATGCACATGGGTCAGCCCAGTTGCCCAAATAATTCAGATGAGAACATACCTGGAGGAGTGATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp AACCAAATATCCGGTTATCTGTATCAAAGACTATTACCACAGAACTaGCTGCATCATGATGCACAAAGACCTGTGTGTGCTGCTGCTGGT +
Preference number: 5 (lower is better)
Translates to: NQISGYLYQRLLPQN*LHHDAQRPVCAAAG
Trigger: ACCAGCAGCAGCACACACAGGTCTTTGTGCATCATGATGCAGCCAGTTCTGTGGTAATAGTCTTTGATACAGATAACCGGATATTTGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp GAATATAATGTTTCCTCCTCTGTGTCCGTTTCATCCTGGAACTCATaGCTTAGGAGGGACTTCTTAGAGCCAGTTGACATCATGCGAATT +
Preference number: 5 (lower is better)
Translates to: EYNVSSSVSVSSWNS*LRRDFLEPVDIMRI
Trigger: AATTCGCATGATGTCAACTGGCTCTAAGAAGTCCCTCCTAAGCCATGAGTTCCAGGATGAAACGGACACAGAGGAGGAAACATTATATTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTTTACTGACATCACAGTaGGCCGAAGGGAGAAATCCA +
Preference number: 5 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFLLTSQ*AEGRNP
Trigger: TGGATTTCTCCCTTCGGCCAACTGTGATGTCAGTAA...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ACTGTCAAGGGAATCATAGGACAAAGGACTGAATTACTTTTGGAGGCCCATGTGGTACGTGGCAACTCCTaGCTCATTATCATCATAAGG +
Preference number: 5 (lower is better)
Translates to: TVKGIIGQRTELLLEAHVVRGNS*LIIIIR
Trigger: CCTTATGATGATAATGAGCAAGGAGTTGCCACGTAC...CACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGTTGAGATACATGTCCTaGCAAGGTCTACCTTGGAAC +
Preference number: 5 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLLRYMS*QGLPWN
Trigger: GTTCCAAGGTAGACCTTGCAAGGACATGTATCTCAA...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGTCTCATCTGAATTATTaGGGCAACTGGGCTGACCCA +
Preference number: 5 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRSHLNY*GNWADP
Trigger: TGGGTCAGCCCAGTTGCCCAAATAATTCAGATGAGA...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ACTGTCAAGGGAATCATAGGACAAAGGACTGAATTACTTTTGGAGGCCCATGTGCGGTGGAAGCCATCTTaGTGTCTATTAGACTTGATG +
Preference number: 5 (lower is better)
Translates to: TVKGIIGQRTELLLEAHVRWKPS*CLLDLM
Trigger: CATCAAGTCTAATAGACACAAAGATGGCTTCCACCG...CACATGGGCCTCCAAAAGTAATTCAGTCCTTTGTCCTATGATTCCCTTGACAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp ATGGACACCTGGGTTATCAGATATCTCCATCACATACAGTTCTCTTaGCTCTACGGATTTCCCCAGAGAATAAAGACGGGTGATATTAGG +
Preference number: 5 (lower is better)
Translates to: MDTWVIRYLHHIQFS*LYGFPQRIKTGDIR
Trigger: CCTAATATCACCCGTCTTTATTCTCTGGGGAAATCCGTAGAGTCAAGAGAACTGTATGTGATGGAGATATCTGATAACCCAGGTGTCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp TCCTGGGACTTTTCATATCCATCAGGATTCATGGATGGCATAAGGTaGATTCTTGTGCTGCGAACCAAATCTGTTACTTCAGGGTCTGTT +
Preference number: 5 (lower is better)
Translates to: SWDFSYPSGFMDGIR*ILVLRTKSVTSGSV
Trigger: AACAGACCCTGAAGTAACAGATTTGGTTCGCAGCACAAGAATTCACCTTATGCCATCCATGAATCCTGATGGATATGAAAAGTCCCAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp CGAATCTCCTTCCTGGGACTTTTCATATCCATCAGGATTCATGGATaGCATAAGGTGAATTCTTGTGCTGCGAACCAAATCTGTTACTTC +
Preference number: 5 (lower is better)
Translates to: RISFLGLFISIRIHG*HKVNSCAANQICYF
Trigger: GAAGTAACAGATTTGGTTCGCAGCACAAGAATTCACCTTATGCCATCCATGAATCCTGATGGATATGAAAAGTCCCAGGAAGGAGATTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp TTCATTACAAGTCCTCTCAGGAACTCGGATAAGTCTTTGTATGAATaGTATCGATACAGAGCCAGGTCTGAGGACGAGCTTAACATGAAG +
Preference number: 5 (lower is better)
Translates to: FITSPLRNSDKSLYE*YRYRARSEDELNMK
Trigger: CTTCATGTTAAGCTCGTCCTCAGACCTGGCTCTGTATCGATACCATTCATACAAAGACTTATCCGAGTTCCTGAGAGGACTTGTAATGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp TACCAGCAACAAAACGAATCTTCGGTTCTTCAGGTTCTGATATGTTaGGCTTATTGGAGATCTCCAGGGACCAAATGTGACGATACTCAA +
Preference number: 5 (lower is better)
Translates to: YQQQNESSVLQVLIC*AYWRSPGTKCDDTQ
Trigger: TTGAGTATCGTCACATTTGGTCCCTGGAGATCTCCAATAAGCCCAACATATCAGAACCTGAAGAACCGAAGATTCGTTTTGTTGCTGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGAGGGCTGACCCATGTGCATaGATGGATGGTTATTTGCAT +
Preference number: 5 (lower is better)
Translates to: IVFVKEQGGKKAYKLITRADPCA*MDGYLH
Trigger: ATGCAAATAACCATCCATCAATGCACATGGGTCAGC...CCTCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGATTACCACGAGTTCCCTaGGCAAACCAAATATCCGGT +
Preference number: 5 (lower is better)
Translates to: TLFLLRSREGRRLINSSRLPRVP*ANQISG
Trigger: ACCGGATATTTGGTTTGCCAAGGGAACTCGTGGTAA...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp AATGTGATCAAAGACTCACGATTATTCTCCCATTCTTGTCGAAGCTaGGAAGCAGGTGGGTACTTGCAGCAAGACAATTCTAATGTGATC +
Preference number: 5 (lower is better)
Translates to: NVIKDSRLFSHSCRS*EAGGYLQQDNSNVI
Trigger: GATCACATTAGAATTGTCTTGCTGCAAGTACCCACCTGCTTCTCAGCTTCGACAAGAATGGGAGAATAATCGTGAGTCTTTGATCACATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp ACAAGTAATCTGTGGAAATCACCAAATCTTCCCGTTGTGATGTTATaGTTAATACCAGCCACTGAAATGGTTGCGTTCTCTAACCCAGAG +
Preference number: 5 (lower is better)
Translates to: TSNLWKSPNLPVVML*LIPATEMVAFSNPE
Trigger: CTCTGGGTTAGAGAACGCAACCATTTCAGTGGCTGGTATTAATCATAACATCACAACGGGAAGATTTGGTGATTTCCACAGATTACTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp CTGTTACTTCAGGGTCTGTTCCAAAATTCTTGCAGAGGTATTCAATaGGATTCAATAGCAGCTCTCTTCCAACCACTTCATTTCCATGCA +
Preference number: 5 (lower is better)
Translates to: LLLQGLFQNSCRGIQ*DSIAALFQPLHFHA
Trigger: TGCATGGAAATGAAGTGGTTGGAAGAGAGCTGCTATTGAATCTCATTGAATACCTCTGCAAGAATTTTGGAACAGACCCTGAAGTAACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 90 bp CTTGGAATAAGAAAGTGCTATTTGCTGAAATACAGCATCATCTGGTaGCTTGCTGTACGTGGCAACTCCTTGCTCATTATCATCATAAGG +
Preference number: 5 (lower is better)
Translates to: LGIRKCYLLKYSIIW*LAVRGNSLLIIIIR
Trigger: CCTTATGATGATAATGAGCAAGGAGTTGCCACGTACAGCAAGTCACCAGATGATGCTGTATTTCAGCAAATAGCACTTTCTTATTCCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGATTCGTGATCCCATCTTaGAAAGTCTCGTCTTCATCT +
Preference number: 5 (lower is better)
Translates to: TLFLLRSREGRRLINSSRFVIPS*KVSSSS
Trigger: AGATGAAGACGAGACTTTCAAAGATGGGATCACGAA...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGTCTGTTCCAAAATTCTaGCAGAGGTATTCAATGAGA +
Preference number: 5 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLSVPKF*QRYSMR
Trigger: TCTCATTGAATACCTCTGCAAGAATTTTGGAACAGA...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp GGGAAACAAAGCGGCTGCCCCATCTTCTGCTGCATAAATAGAAATCAGATTTTTTCTTTGACTCATTGTTaGCATCTGCTGAAGATCGAA +
Preference number: 5 (lower is better)
Translates to: GKQSGCPIFCCINRNQIFSLTHC*HLLKIE
Trigger: TTCGATCTTCAGCAGATGCAAACAATGAGTCAAAGA...AAAAATCTGATTTCTATTTATGCAGCAGAAGATGGGGCAGCCGCTTTGTTTCCC
41% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp AGGAATTTCTCTTCTTACTGCAGTGTCTCCCAAGAAGAGCTGTCATTTTGCCTGAACTCGGATAAGTCTTaGTATGAATGGTATCGATAC +
Preference number: 5 (lower is better)
Translates to: RNFSSYCSVSQEELSFCLNSDKS*YEWYRY
Trigger: GTATCGATACCATTCATACAAAGACTTATCCGAGTT...CAGGCAAAATGACAGCTCTTCTTGGGAGACACTGCAGTAAGAAGAGAAATTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp ACATTGTTTTTGTTAAGGAGCAGGGAGGGAAGAAGGCTTATAAACTCATCACGATTGTGTCTATTAGACTaGATGGAGCAGATGCACCAA +
Preference number: 5 (lower is better)
Translates to: TLFLLRSREGRRLINSSRLCLLD*MEQMHQ
Trigger: TTGGTGCATCTGCTCCATCAAGTCTAATAGACACAA...TCGTGATGAGTTTATAAGCCTTCTTCCCTCCCTGCTCCTTAACAAAAACAATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS GCA 90 bp AATAAGAAAGTGCTATTTGCTGAAATACAGCATCATCTGGTGACTTaGTGTACGTGGCAACTCCTTGCTCATTATCATCATAAGGGTAGT +
Preference number: 5 (lower is better)
Translates to: NKKVLFAEIQHHLVT*CTWQLLAHYHHKGS
Trigger: ACTACCCTTATGATGATAATGAGCAAGGAGTTGCCACGTACAGCAAGTCACCAGATGATGCTGTATTTCAGCAAATAGCACTTTCTTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTGAAGCAGGTGGGTACTaGCAGCAAGACAATTCTAAT +
Preference number: 5 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSEAGGY*QQDNSN
Trigger: ATTAGAATTGTCTTGCTGCAAGTACCCACCTGCTTC...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 90 bp AGATCTTCGATTTTGCTCCCAGTACTTTGGCAGTTCATTCTCAAATaGATATTTCACACAACCGAGTTCGATAGTTACTTCAAAGCAATT +
Preference number: 5 (lower is better)
Translates to: RSSILLPVLWQFILK*IFHTTEFDSYFKAI
Trigger: AATTGCTTTGAAGTAACTATCGAACTCGGTTGTGTGAAATATCCATTTGAGAATGAACTGCCAAAGTACTGGGAGCAAAATCGAAGATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS-3UTR CAA 90 bp AAAAGCATCATTCCACTGAACAGCATTCAGACAGACACAATAAAATACCAATCTTTTGCTCCCAGTACTTaGGCAGTTCATTCTCAAATG +
Preference number: 5 (lower is better)
Translates to: KSIIPLNSIQTDTIKYQSFAPST*AVHSQM
Trigger: CATTTGAGAATGAACTGCCAAAGTACTGGGAGCAAA...AGATTGGTATTTTATTGTGTCTGTCTGAATGCTGTTCAGTGGAATGATGCTTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp GCCGCCTCGGAGCCGCCAACGGTTGTCGTGGTCGCCTCAGCCTTCTaGATGTGCGCCGCCTGGGCCGAGCTCCTCAGTAGCAGCAGCAGC +
Preference number: 6 (lower is better)
Translates to: AASEPPTVVVVASAF*MCAAWAELLSSSSS
Trigger: GCTGCTGCTGCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGAGGCGACCACGACAACCGTTGGCGGCTCCGAGGCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp CGCCAGCTCGCGGGCCAGGTAGACCAACACCTGGCGTaGCACCGTCTCGTCGCCGTGCATGTTACCCACCAG +
Preference number: 6 (lower is better)
Translates to: RQLAGQVDQHLA*HRLVAVHVTHQ
Trigger: CTGGTGGGTAACATGCACGGCGACGAGACGGTGTCACGCCAGGTGTTGGTCTACCTGGCCCGCGAGCTGGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp GTCGTGGTCGCCTCAGCCTTCTTGATGTGCGCCGCCTaGGCCGAGCTCCTCAGTAGCAGCAGCAGCAGCAGC +
Preference number: 6 (lower is better)
Translates to: VVVASAFLMCAA*AELLSSSSSSS
Trigger: GCTGCTGCTGCTGCTGCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGAGGCGACCACGAC
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp ACCTCATCCAGGGAAGGTGGCTCGCCGGTGCTGAACTaGTCAGGGAAGCTGCGGTTGAGGTCGCGGCCTCGG +
Preference number: 6 (lower is better)
Translates to: TSSREGGSPVLN*SGKLRLRSRPR
Trigger: CCGAGGCCGCGACCTCAACCGCAGCTTCCCTGACCAGTTCAGCACCGGCGAGCCACCTTCCCTGGATGAGGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp GAGCCGCCAACGGTTGTCGTGGTCGCCTCAGCCTTCTaGATGTGCGCCGCCTGGGCCGAGCTCCTCAGTAGC +
Preference number: 6 (lower is better)
Translates to: EPPTVVVVASAF*MCAAWAELLSS
Trigger: GCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGAGGCGACCACGACAACCGTTGGCGGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp AGCCGCCAACGGTTGTCGTGGTCGCCTCAGCCTTCTTaGTGTGCGCCGCCTGGGCCGAGCTCCTCAGTAGCA +
Preference number: 6 (lower is better)
Translates to: SRQRLSWSPQPS*CAPPGPSSSVA
Trigger: TGCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGAGGCGACCACGACAACCGTTGGCGGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS GCA 72 bp CCAACGGTTGTCGTGGTCGCCTCAGCCTTCTTGATGTaGGCCGCCTGGGCCGAGCTCCTCAGTAGCAGCAGC +
Preference number: 6 (lower is better)
Translates to: PTVVVVASAFLM*AAWAELLSSSS
Trigger: GCTGCTGCTACTGAGGAGCTCGGCCCAGGCGGCGCACATCAAGAAGGCTGAGGCGACCACGACAACCGTTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp CAGAAAGCACAAACTTGTTCCTGCGGATCCAGTCGATaGGGGCGCGCACCTCCGGCACCTCATCCAGGGAAG +
Preference number: 6 (lower is better)
Translates to: QKAQTCSCGSSR*GRAPPAPHPGK
Trigger: CTTCCCTGGATGAGGTGCCGGAGGTGCGCGCCCTCATCGACTGGATCCGCAGGAACAAGTTTGTGCTTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp CAGGTCTTTGCCATGAGCATTTGTGTGCCCAGTCTTTaGGGTGCAGTCTTTCTCTTGAGCACGCTCTCGCCC +
Preference number: 6 (lower is better)
Translates to: QVFAMSICVPSL*GAVFLLSTLSP
Trigger: GGGCGAGAGCGTGCTCAAGAGAAAGACTGCACCTCAAAGACTGGGCACACAAATGCTCATGGCAAAGACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp CCACCTTCCACGTCATACCAGTGCGCGCCATTCGTGATCCCATCTTaGAAAGTCTCGTCTTCATCTCCTGGACAATGGGGTTCGCCAGTT +
Preference number: 6 (lower is better)
Translates to: PPSTSYQCAPFVIPS*KVSSSSPGQWGSPV
Trigger: AACTGGCGAACCCCATTGTCCAGGAGATGAAGACGAGACTTTCAAAGATGGGATCACGAATGGCGCGCACTGGTATGACGTGGAAGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp TTTGTGTGCCCAGTCTTTGAGGTGCAGTCTTTCTCTTaGGCACGCTCTCGCCCATCTGGATTCAGAGAGGGA +
Preference number: 6 (lower is better)
Translates to: FVCPVFEVQSFS*ARSRPSGFREG
Trigger: TCCCTCTCTGAATCCAGATGGGCGAGAGCGTGCTCAAGAGAAAGACTGCACCTCAAAGACTGGGCACACAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp GGCTCCCCGCATCACTCCTCCAGGTATGTTCTCATCTaGATTATTTGGGCAACTGGGCTGACCCATGTGCAT +
Preference number: 6 (lower is better)
Translates to: GSPHHSSRYVLI*IIWATGLTHVH
Trigger: ATGCACATGGGTCAGCCCAGTTGCCCAAATAATTCAGATGAGAACATACCTGGAGGAGTGATGCGGGGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp GTGTGTGCTGCTGCTGGTACCCATCAGCAATTGCGTTaGTGTTATGGACTCCAGGAGCTAGGAGCACATGGA +
Preference number: 6 (lower is better)
Translates to: VCAAAGTHQQLR*CYGLQELGAHG
Trigger: TCCATGTGCTCCTAGCTCCTGGAGTCCATAACATCAACGCAATTGCTGATGGGTACCAGCAGCAGCACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp TGTGTGTGCTGCTGCTGGTACCCATCAGCAATTGCGTaGATGTTATGGACTCCAGGAGCTAGGAGCACATGG +
Preference number: 6 (lower is better)
Translates to: CVCCCWYPSAIA*MLWTPGARSTW
Trigger: CCATGTGCTCCTAGCTCCTGGAGTCCATAACATCAACGCAATTGCTGATGGGTACCAGCAGCAGCACACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp AGTCTGTGTCCAGGTCTTTGCCATGAGCATTTGTGTGCCCAGTCTTaGAGGTGCAGTCTTTCTCTTGAGCACGCTCTCGCCCATCTGGAT +
Preference number: 6 (lower is better)
Translates to: SLCPGLCHEHLCAQS*RCSLSLEHALAHLD
Trigger: ATCCAGATGGGCGAGAGCGTGCTCAAGAGAAAGACTGCACCTCAAAGACTGGGCACACAAATGCTCATGGCAAAGACCTGGACACAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp GCCTTCACCCAGCTCATCACAGCGATAGTTTCTGGTTaGGTAGGTTCTGTGATTGGAACAAACTGGTCTGGG +
Preference number: 6 (lower is better)
Translates to: AFTQLITAIVSG*VGSVIGTNWSG
Trigger: CCCAGACCAGTTTGTTCCAATCACAGAACCTACCCAACCAGAAACTATCGCTGTGATGAGCTGGGTGAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp CCAGCCTTGTCTTTTACTAACCCGTGGACTCCTTTGTaGACCTCCACCAGCATGCTAAGGAGAGACTTCTTG +
Preference number: 6 (lower is better)
Translates to: PALSFTNPWTPL*TSTSMLRRDFL
Trigger: CAAGAAGTCTCTCCTTAGCATGCTGGTGGAGGTCCACAAAGGAGTCCACGGGTTAGTAAAAGACAAGGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp ACGTCATACCAGTGCGCGCCATTCGTGATCCCATCTTaGAAAGTCTCGTCTTCATCTCCTGGACAATGGGGT +
Preference number: 6 (lower is better)
Translates to: TSYQCAPFVIPS*KVSSSSPGQWG
Trigger: ACCCCATTGTCCAGGAGATGAAGACGAGACTTTCAAAGATGGGATCACGAATGGCGCGCACTGGTATGACGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp GGCCTTCACCCAGCTCATCACAGCGATAGTTTCTGGTaGGGTAGGTTCTGTGATTGGAACAAACTGGTCTGG +
Preference number: 6 (lower is better)
Translates to: GLHPAHHSDSFW*GRFCDWNKLVW
Trigger: CCAGACCAGTTTGTTCCAATCACAGAACCTACCCAACCAGAAACTATCGCTGTGATGAGCTGGGTGAAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp AAACGGGTAGGCCTTCACCCAGCTCATCACAGCGATAGTTTCTGGTaGGGTAGGTTCTGTGATTGGAACAAACTGGTCTGGGAAATTCCG +
Preference number: 6 (lower is better)
Translates to: KRVGLHPAHHSDSFW*GRFCDWNKLVWEIP
Trigger: CGGAATTTCCCAGACCAGTTTGTTCCAATCACAGAACCTACCCAACCAGAAACTATCGCTGTGATGAGCTGGGTGAAGGCCTACCCGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp CGGCTCCCCGCATCACTCCTCCAGGTATGTTCTCATCTGAATTATTaGGGCAACTGGGCTGACCCATGTGCATTGATGGATGGTTATTTG +
Preference number: 6 (lower is better)
Translates to: RLPASLLQVCSHLNY*GNWADPCALMDGYL
Trigger: CAAATAACCATCCATCAATGCACATGGGTCAGCCCAGTTGCCCAAATAATTCAGATGAGAACATACCTGGAGGAGTGATGCGGGGAGCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp ATCGATACAGAGCCAGGTCTGAGGACGAGCTTAACATaGAGCCTTCCAAGCCATTCTCAGCCGAAAGGTGTT +
Preference number: 6 (lower is better)
Translates to: IDTEPGLRTSLT*SLPSHSQPKGV
Trigger: AACACCTTTCGGCTGAGAATGGCTTGGAAGGCTTCATGTTAAGCTCGTCCTCAGACCTGGCTCTGTATCGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp GGTGCAGTCTTTCTCTTGAGCACGCTCTCGCCCATCTaGATTCAGAGAGGGAACAATCACAATTCTAGTCCT +
Preference number: 6 (lower is better)
Translates to: GAVFLLSTLSPI*IQRGNNHNSSP
Trigger: AGGACTAGAATTGTGATTGTTCCCTCTCTGAATCCAGATGGGCGAGAGCGTGCTCAAGAGAAAGACTGCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp GAACAGCAACTGTGCCAGGAGTTGTTACAGCCTCAGTaGAACCAGGCATTACTGACATCACAGTTGGCCGAA +
Preference number: 6 (lower is better)
Translates to: EQQLCQELLQPQ*NQALLTSQLAE
Trigger: TTCGGCCAACTGTGATGTCAGTAATGCCTGGTTCAACTGAGGCTGTAACAACTCCTGGCACAGTTGCTGTTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp TTACCAGCCTTGTCTTTTACTAACCCGTGGACTCCTTaGTGGACCTCCACCAGCATGCTAAGGAGAGACTTC +
Preference number: 6 (lower is better)
Translates to: LPALSFTNPWTP*WTSTSMLRRDF
Trigger: GAAGTCTCTCCTTAGCATGCTGGTGGAGGTCCACAAAGGAGTCCACGGGTTAGTAAAAGACAAGGCTGGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp GAGGCGCCAGTAATCTCCAGCTTTGTAAGTGGTCACTaGGTGATTAATTTCAGCAACACTGAGGGTGGCATT +
Preference number: 6 (lower is better)
Translates to: EAPVISSFVSGH*VINFSNTEGGI
Trigger: AATGCCACCCTCAGTGTTGCTGAAATTAATCACCCAGTGACCACTTACAAAGCTGGAGATTACTGGCGCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp CCTTCATTGAGTACAATGACTGCTTTCGAGATTGGTTTACCAGCCTaGTCTTTTACTAACCCGTGGACTCCTTTGTGGACCTCCACCAGC +
Preference number: 6 (lower is better)
Translates to: PSLSTMTAFEIGLPA*SFTNPWTPLWTSTS
Trigger: GCTGGTGGAGGTCCACAAAGGAGTCCACGGGTTAGTAAAAGACAAGGCTGGTAAACCAATCTCGAAAGCAGTCATTGTACTCAATGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp GAGCTTAACATGAAGCCTTCCAAGCCATTCTCAGCCGAAAGGTGTTaGATTAATGCTTCAAACTCCTTAGAAGTTGGGTCGCTGGTGTCG +
Preference number: 6 (lower is better)
Translates to: ELNMKPSKPFSAERC*INASNSLEVGSLVS
Trigger: CGACACCAGCGACCCAACTTCTAAGGAGTTTGAAGCATTAATCAAACACCTTTCGGCTGAGAATGGCTTGGAAGGCTTCATGTTAAGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp ATGTTGGGCTTATTGGAGATCTCCAGGGACCAAATGTaGCGATACTCAACACTCTGTCCCAAAGTGGTAAGG +
Preference number: 6 (lower is better)
Translates to: MLGLLEISRDQM*RYSTLCPKVVR
Trigger: CCTTACCACTTTGGGACAGAGTGTTGAGTATCGTCACATTTGGTCCCTGGAGATCTCCAATAAGCCCAACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp GTATCAAAGACTATTACCACAGAACTGGCTGCATCATaGTGCACAAAGACCTGTGTGTGCTGCTGCTGGTAC +
Preference number: 6 (lower is better)
Translates to: VSKTITTELAAS*CTKTCVCCCWY
Trigger: GTACCAGCAGCAGCACACACAGGTCTTTGTGCATCATGATGCAGCCAGTTCTGTGGTAATAGTCTTTGATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp CGTGATCCCATCTTTGAAAGTCTCGTCTTCATCTCCTaGACAATGGGGTTCGCCAGTTTTCATTATAGGGTG +
Preference number: 6 (lower is better)
Translates to: RDPIFESLVFIS*TMGFASFHYRV
Trigger: CACCCTATAATGAAAACTGGCGAACCCCATTGTCCAGGAGATGAAGACGAGACTTTCAAAGATGGGATCACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp GTGAAAGTCTTTAGGCTGAATTGGCTGATGGGAGGATaGTGTTCCAGGAGGGATATTAGGAACAGCAACTGT +
Preference number: 6 (lower is better)
Translates to: VKVFRLNWLMGG*CSRRDIRNSNC
Trigger: ACAGTTGCTGTTCCTAATATCCCTCCTGGAACACCATCCTCCCATCAGCCAATTCAGCCTAAAGACTTTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp AGTCCTCTCAGGAACTCGGATAAGTCTTTGTATGAATaGTATCGATACAGAGCCAGGTCTGAGGACGAGCTT +
Preference number: 6 (lower is better)
Translates to: SPLRNSDKSLYE*YRYRARSEDEL
Trigger: AAGCTCGTCCTCAGACCTGGCTCTGTATCGATACCATTCATACAAAGACTTATCCGAGTTCCTGAGAGGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp GCCAAGAGCAGTTCAGTTCCAACTGGAGCGTTTCCATaGATACCAGCAACAAAACGAATCTTCGGTTCTTCA +
Preference number: 6 (lower is better)
Translates to: AKSSSVPTGAFP*IPATKRIFGSS
Trigger: TGAAGAACCGAAGATTCGTTTTGTTGCTGGTATCCATGGAAACGCTCCAGTTGGAACTGAACTGCTCTTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp GCATCACTCCTCCAGGTATGTTCTCATCTGAATTATTaGGGCAACTGGGCTGACCCATGTGCATTGATGGAT +
Preference number: 6 (lower is better)
Translates to: ASLLQVCSHLNY*GNWADPCALMD
Trigger: ATCCATCAATGCACATGGGTCAGCCCAGTTGCCCAAATAATTCAGATGAGAACATACCTGGAGGAGTGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp AGAGTCCAGTGGTCTTATGCTCGGGAGAATCATCAAAAGGATAGCTaGCTACCACTGAGCCACCATGAAGATTTCCAGAAAGCACAAACT +
Preference number: 6 (lower is better)
Translates to: RVQWSYARENHQKDS*LPLSHHEDFQKAQT
Trigger: AGTTTGTGCTTTCTGGAAATCTTCATGGTGGCTCAGTGGTAGCAAGCTATCCTTTTGATGATTCTCCCGAGCATAAGACCACTGGACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp GTTGACATCATGCGAATTTCATCTTCATATTCATCATaGTGCTGCCGCAGCCGGTGGAAGCCATCTTTGTGT +
Preference number: 6 (lower is better)
Translates to: VDIMRISSSYSS*CCRSRWKPSLC
Trigger: ACACAAAGATGGCTTCCACCGGCTGCGGCAGCATCATGATGAATATGAAGATGAAATTCGCATGATGTCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS GCA 72 bp AACTGGGTTCCTTTTGTAATTCAGGCAAAGAAATTCTaGCAGAGCCAAGAGCAGTTCAGTTCCAACTGGAGC +
Preference number: 6 (lower is better)
Translates to: NWVPFVIQAKKF*QSQEQFSSNWS
Trigger: GCTCCAGTTGGAACTGAACTGCTCTTGGCTCTGGCAGAATTTCTTTGCCTGAATTACAAAAGGAACCCAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp CCATCTTTGAAAGTCTCGTCTTCATCTCCTGGACAATaGGGTTCGCCAGTTTTCATTATAGGGTGGTTAGAG +
Preference number: 6 (lower is better)
Translates to: PSLKVSSSSPGQ*GSPVFIIGWLE
Trigger: CTCTAACCACCCTATAATGAAAACTGGCGAACCCCATTGTCCAGGAGATGAAGACGAGACTTTCAAAGATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp AAATTCTGCCAGAGCCAAGAGCAGTTCAGTTCCAACTaGAGCGTTTCCATGGATACCAGCAACAAAACGAAT +
Preference number: 6 (lower is better)
Translates to: KFCQSQEQFSSN*SVSMDTSNKTN
Trigger: ATTCGTTTTGTTGCTGGTATCCATGGAAACGCTCCAGTTGGAACTGAACTGCTCTTGGCTCTGGCAGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp TGGGAAGTAGCAGCAGCTTGTGTATACCGTGATTTCTaGGCAATGGCCATAGGTGACACTATAATCCTTCAT +
Preference number: 6 (lower is better)
Translates to: WEVAAACVYRDF*AMAIGDTIILH
Trigger: ATGAAGGATTATAGTGTCACCTATGGCCATTGCCCAGAAATCACGGTATACACAAGCTGCTGCTACTTCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp CAATGTGATCAAAGACTCACGATTATTCTCCCATTCTaGTCGAAGCTGAGAAGCAGGTGGGTACTTGCAGCA +
Preference number: 6 (lower is better)
Translates to: QCDQRLTIILPF*SKLRSRWVLAA
Trigger: TGCTGCAAGTACCCACCTGCTTCTCAGCTTCGACAAGAATGGGAGAATAATCGTGAGTCTTTGATCACATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp AGTACAATGACTGCTTTCGAGATTGGTTTACCAGCCTaGTCTTTTACTAACCCGTGGACTCCTTTGTGGACC +
Preference number: 6 (lower is better)
Translates to: STMTAFEIGLPA*SFTNPWTPLWT
Trigger: GGTCCACAAAGGAGTCCACGGGTTAGTAAAAGACAAGGCTGGTAAACCAATCTCGAAAGCAGTCATTGTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp GTGATTGGAACAAACTGGTCTGGGAAATTCCGGTTTAGGTCAAAGTaGTTGCTGTTGTTTCTGCCAACTACACTGATCGAATCTCCTTCC +
Preference number: 6 (lower is better)
Translates to: VIGTNWSGKFRFRSK*LLLFLPTTLIESPS
Trigger: GGAAGGAGATTCGATCAGTGTAGTTGGCAGAAACAACAGCAACAACTTTGACCTAAACCGGAATTTCCCAGACCAGTTTGTTCCAATCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp TTTCCACTGTCTGCACTGGTTTATCATACGGATATGTaGCCAGCACAGAACCACCATCTAAGGCAATGGAAA +
Preference number: 6 (lower is better)
Translates to: FPLSALVYHTDM*PAQNHHLRQWK
Trigger: TTTCCATTGCCTTAGATGGTGGTTCTGTGCTGGTCACATATCCGTATGATAAACCAGTGCAGACAGTGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp AGACTTCATCATCGGAGGTTTTGCTATAGAGTCCAGTaGTCTTATGCTCGGGAGAATCATCAAAAGGATAGC +
Preference number: 6 (lower is better)
Translates to: RLHHRRFCYRVQ*SYARENHQKDS
Trigger: GCTATCCTTTTGATGATTCTCCCGAGCATAAGACCACTGGACTCTATAGCAAAACCTCCGATGATGAAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp GCTGAAATACAGCATCATCTGGTGACTTGCTGTACGTaGCAACTCCTTGCTCATTATCATCATAAGGGTAGT +
Preference number: 6 (lower is better)
Translates to: AEIQHHLVTCCT*QLLAHYHHKGS
Trigger: ACTACCCTTATGATGATAATGAGCAAGGAGTTGCCACGTACAGCAAGTCACCAGATGATGCTGTATTTCAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp TCTTCGGTTCTTCAGGTTCTGATATGTTGGGCTTATTaGAGATCTCCAGGGACCAAATGTGACGATACTCAA +
Preference number: 6 (lower is better)
Translates to: SSVLQVLICWAY*RSPGTKCDDTQ
Trigger: TTGAGTATCGTCACATTTGGTCCCTGGAGATCTCCAATAAGCCCAACATATCAGAACCTGAAGAACCGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp CTCCAGGTATGTTCTCATCTGAATTATTTGGGCAACTaGGCTGACCCATGTGCATTGATGGATGGTTATTTG +
Preference number: 6 (lower is better)
Translates to: LQVCSHLNYLGN*ADPCALMDGYL
Trigger: CAAATAACCATCCATCAATGCACATGGGTCAGCCCAGTTGCCCAAATAATTCAGATGAGAACATACCTGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp TCCGGTTATCTGTATCAAAGACTATTACCACAGAACTaGCTGCATCATGATGCACAAAGACCTGTGTGTGCT +
Preference number: 6 (lower is better)
Translates to: SGYLYQRLLPQN*LHHDAQRPVCA
Trigger: AGCACACACAGGTCTTTGTGCATCATGATGCAGCCAGTTCTGTGGTAATAGTCTTTGATACAGATAACCGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp ATGAAGCCTTCCAAGCCATTCTCAGCCGAAAGGTGTTaGATTAATGCTTCAAACTCCTTAGAAGTTGGGTCG +
Preference number: 6 (lower is better)
Translates to: MKPSKPFSAERC*INASNSLEVGS
Trigger: CGACCCAACTTCTAAGGAGTTTGAAGCATTAATCAAACACCTTTCGGCTGAGAATGGCTTGGAAGGCTTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp GTGCTGCGAACCAAATCTGTTACTTCAGGGTCTGTTCCAAAATTCTaGCAGAGGTATTCAATGAGATTCAATAGCAGCTCTCTTCCAACC +
Preference number: 6 (lower is better)
Translates to: VLRTKSVTSGSVPKF*QRYSMRFNSSSLPT
Trigger: GGTTGGAAGAGAGCTGCTATTGAATCTCATTGAATACCTCTGCAAGAATTTTGGAACAGACCCTGAAGTAACAGATTTGGTTCGCAGCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp TGGGTTATCAGATATCTCCATCACATACAGTTCTCTTaGCTCTACGGATTTCCCCAGAGAATAAAGACGGGT +
Preference number: 6 (lower is better)
Translates to: WVIRYLHHIQFS*LYGFPQRIKTG
Trigger: ACCCGTCTTTATTCTCTGGGGAAATCCGTAGAGTCAAGAGAACTGTATGTGATGGAGATATCTGATAACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS GCA 72 bp GTGCTATTTGCTGAAATACAGCATCATCTGGTGACTTaGTGTACGTGGCAACTCCTTGCTCATTATCATCAT +
Preference number: 6 (lower is better)
Translates to: VLFAEIQHHLVT*CTWQLLAHYHH
Trigger: ATGATGATAATGAGCAAGGAGTTGCCACGTACAGCAAGTCACCAGATGATGCTGTATTTCAGCAAATAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp TTCCTGGGACTTTTCATATCCATCAGGATTCATGGATaGCATAAGGTGAATTCTTGTGCTGCGAACCAAATC +
Preference number: 6 (lower is better)
Translates to: FLGLFISIRIHG*HKVNSCAANQI
Trigger: GATTTGGTTCGCAGCACAAGAATTCACCTTATGCCATCCATGAATCCTGATGGATATGAAAAGTCCCAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp AACTGGTCTGGGAAATTCCGGTTTAGGTCAAAGTTGTaGCTGTTGTTTCTGCCAACTACACTGATCGAATCT +
Preference number: 6 (lower is better)
Translates to: NWSGKFRFRSKL*LLFLPTTLIES
Trigger: AGATTCGATCAGTGTAGTTGGCAGAAACAACAGCAACAACTTTGACCTAAACCGGAATTTCCCAGACCAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp CTTTTCAATCAATGTGATCAAAGACTCACGATTATTCTCCCATTCTaGTCGAAGCTGAGAAGCAGGTGGGTACTTGCAGCAAGACAATTC +
Preference number: 6 (lower is better)
Translates to: LFNQCDQRLTIILPF*SKLRSRWVLAARQF
Trigger: GAATTGTCTTGCTGCAAGTACCCACCTGCTTCTCAGCTTCGACAAGAATGGGAGAATAATCGTGAGTCTTTGATCACATTGATTGAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp CTGTGGAAATCACCAAATCTTCCCGTTGTGATGTTATaGTTAATACCAGCCACTGAAATGGTTGCGTTCTCT +
Preference number: 6 (lower is better)
Translates to: LWKSPNLPVVML*LIPATEMVAFS
Trigger: AGAGAACGCAACCATTTCAGTGGCTGGTATTAATCATAACATCACAACGGGAAGATTTGGTGATTTCCACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp AGAGGGAACAATCACAATTCTAGTCCTGTCAACCAATaGGGTAACAACTGGGTTCCTTTTGTAATTCAGGCA +
Preference number: 6 (lower is better)
Translates to: RGNNHNSSPVNQ*GNNWVPFVIQA
Trigger: TGCCTGAATTACAAAAGGAACCCAGTTGTTACCCAATTGGTTGACAGGACTAGAATTGTGATTGTTCCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 90 bp TGGATTCAGAGAGGGAACAATCACAATTCTAGTCCTGTCAACCAATaGGGTAACAACTGGGTTCCTTTTGTAATTCAGGCAAAGAAATTC +
Preference number: 6 (lower is better)
Translates to: WIQRGNNHNSSPVNQ*GNNWVPFVIQAKKF
Trigger: GAATTTCTTTGCCTGAATTACAAAAGGAACCCAGTTGTTACCCAATTGGTTGACAGGACTAGAATTGTGATTGTTCCCTCTCTGAATCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CCA 72 bp ATACTTAAATTCTGGTTCACCTGGTTCATGGACACCTaGGTTATCAGATATCTCCATCACATACAGTTCTCT +
Preference number: 6 (lower is better)
Translates to: ILKFWFTWFMDT*VIRYLHHIQFS
Trigger: AGAGAACTGTATGTGATGGAGATATCTGATAACCCAGGTGTCCATGAACCAGGTGAACCAGAATTTAAGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS TCA 72 bp TTTTCATATCCATCAGGATTCATGGATGGCATAAGGTaGATTCTTGTGCTGCGAACCAAATCTGTTACTTCA +
Preference number: 6 (lower is better)
Translates to: FSYPSGFMDGIR*ILVLRTKSVTS
Trigger: TGAAGTAACAGATTTGGTTCGCAGCACAAGAATTCACCTTATGCCATCCATGAATCCTGATGGATATGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp ACCAAATCTGTTACTTCAGGGTCTGTTCCAAAATTCTaGCAGAGGTATTCAATGAGATTCAATAGCAGCTCT +
Preference number: 6 (lower is better)
Translates to: TKSVTSGSVPKF*QRYSMRFNSSS
Trigger: AGAGCTGCTATTGAATCTCATTGAATACCTCTGCAAGAATTTTGGAACAGACCCTGAAGTAACAGATTTGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS CAA 72 bp ATACTCATTGAGATACATGTCCTTGCAAGGTCTACCTaGGAACATCTGCGAATTTTCCTTGGAATAAGAAAG +
Preference number: 6 (lower is better)
Translates to: ILIEIHVLARST*EHLRIFLGIRK
Trigger: CTTTCTTATTCCAAGGAAAATTCGCAGATGTTCCAAGGTAGACCTTGCAAGGACATGTATCTCAATGAGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6
CDS GCA 72 bp TGTGTATACTTTTATTCCTTCATTGAGTACAATGACTaGTTTCGAGATTGGTTTACCAGCCTTGTCTTTTAC +
Preference number: 6 (lower is better)
Translates to: CVYFYSFIEYND*FRDWFTSLVFY
Trigger: GTAAAAGACAAGGCTGGTAAACCAATCTCGAAAGCAGTCATTGTACTCAATGAAGGAATAAAAGTATACACA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021201.6