RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000011463

Ensembl transcript IDs: ENSMUST00000011607.6

Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCCATGGTTGTAAGGTCAGTGCATCAAGCTGTAAACATGCAATCTTaGCTCTGCCTGATGCGGATCTTCTCTCCTTCCGTTGCCTTCCGT +
Preference number: 1 (lower is better)
Translates to: PMVVRSVHQAVNMQS*LCLMRIFSPSVAFR
Trigger: ACGGAAGGCAACGGAAGGAGAGAAGATCCGCATCAGGCAGAGCCAAGATTGCATGTTTACAGCTTGATGCACTGACCTTACAACCATGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR TCA 90 bp GGAGTAGTTTCTCCACATCTGACAATACCAGTACATGTGCACAGCTaGCATGCTCATTATTCACAGTCACTCTCCCTCCCCAAAGCAGGC +
Preference number: 1 (lower is better)
Translates to: GVVSPHLTIPVHVHS*HAHYSQSLSLPKAG
Trigger: GCCTGCTTTGGGGAGGGAGAGTGACTGTGAATAATGAGCATGTCAGCTGTGCACATGTACTGGTATTGTCAGATGTGGAGAAACTACTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR GCA 90 bp AGTTTCTCCACATCTGACAATACCAGTACATGTGCACAGCTGACATaGTCATTATTCACAGTCACTCTCCCTCCCCAAAGCAGGCAATCT +
Preference number: 1 (lower is better)
Translates to: SFSTSDNTSTCAQLT*SLFTVTLPPQSRQS
Trigger: AGATTGCCTGCTTTGGGGAGGGAGAGTGACTGTGAATAATGAGCATGTCAGCTGTGCACATGTACTGGTATTGTCAGATGTGGAGAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CCA 90 bp CCTATTCATAAGCTTTCCATTATAACCAGGCTTCTTTGTCAGTATTaGTCAACTCCAGAAGGAGTAGTTTCTCCACATCTGACAATACCA +
Preference number: 1 (lower is better)
Translates to: PIHKLSIITRLLCQY*STPEGVVSPHLTIP
Trigger: TGGTATTGTCAGATGTGGAGAAACTACTCCTTCTGGAGTTGACCAATACTGACAAAGAAGCCTGGTTATAATGGAAAGCTTATGAATAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CAA 90 bp TCCCATGGTTGTAAGGTCAGTGCATCAAGCTGTAAACATGCAATCTaGGCTCTGCCTGATGCGGATCTTCTCTCCTTCCGTTGCCTTCCG +
Preference number: 2 (lower is better)
Translates to: SHGCKVSASSCKHAI*ALPDADLLSFRCLP
Trigger: CGGAAGGCAACGGAAGGAGAGAAGATCCGCATCAGGCAGAGCCAAGATTGCATGTTTACAGCTTGATGCACTGACCTTACAACCATGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR-3UTR GCA 90 bp AACCAGGCTTCTTTGTCAGTATTGGTCAACTCCAGAAGGAGTAGTTTCTCCACATGTGCACAGCTGACATaGTCATTATTCACAGTCACT +
Preference number: 2 (lower is better)
Translates to: NQASLSVLVNSRRSSFSTCAQLT*SLFTVT
Trigger: AGTGACTGTGAATAATGAGCATGTCAGCTGTGCACA...TGTGGAGAAACTACTCCTTCTGGAGTTGACCAATACTGACAAAGAAGCCTGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR-3UTR TCA 90 bp CCATGGCTTCCCATGGTTGTAAGGTCAGTGCATCAAGCTGTAAACATGCAATCTATTATGTCACTTGAATaGGCTGAGATAAAACCCAAG +
Preference number: 2 (lower is better)
Translates to: PWLPMVVRSVHQAVNMQSIMSLE*AEIKPK
Trigger: CTTGGGTTTTATCTCAGCTCATTCAAGTGACATAAT...AGATTGCATGTTTACAGCTTGATGCACTGACCTTACAACCATGGGAAGCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR-3UTR GCA 90 bp GTCATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTTTTTACAGTCTTCACTaGCCACTATGTATTTTCCTA +
Preference number: 2 (lower is better)
Translates to: VIEWLLLLLLVQLVQPACFYSLH*PLCIFL
Trigger: TAGGAAAATACATAGTGGGCAGTGAAGACTGTAAAA...ACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR-3UTR GCA 90 bp AGCATGTCTTGTCTTACTTCCAGTCTGCTTGCCACAATCAGCTCTTCCAAGAAGAGAAAGATTAGAATCTaGAAACCTCCAAACAAACGA +
Preference number: 2 (lower is better)
Translates to: SMSCLTSSLLATISSSKKRKIRI*KPPNKR
Trigger: TCGTTTGTTTGGAGGTTTGCAGATTCTAATCTTTCT...CTTCTTGGAAGAGCTGATTGTGGCAAGCAGACTGGAAGTAAGACAAGACATGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CAA 90 bp CCAACTCTCCCAATTCCTTCTTCATTGAGTTTCTTTCATTACCATTaGAACAATCACAGGAAGTTCTGGATGTCACTTTGTACGGTATAT +
Preference number: 2 (lower is better)
Translates to: PTLPIPSSLSFFHYH*NNHRKFWMSLCTVY
Trigger: ATATACCGTACAAAGTGACATCCAGAACTTCCTGTGATTGTTCAAATGGTAATGAAAGAAACTCAATGAAGAAGGAATTGGGAGAGTTGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR GCA 72 bp TCAGTGCATCAAGCTGTAAACATGCAATCTTGGCTCTaGCTGATGCGGATCTTCTCTCCTTCCGTTGCCTTC +
Preference number: 3 (lower is better)
Translates to: SVHQAVNMQSWL*LMRIFSPSVAF
Trigger: GAAGGCAACGGAAGGAGAGAAGATCCGCATCAGGCAGAGCCAAGATTGCATGTTTACAGCTTGATGCACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR TCA 72 bp TCTCCACATCTGACAATACCAGTACATGTGCACAGCTaGCATGCTCATTATTCACAGTCACTCTCCCTCCCC +
Preference number: 3 (lower is better)
Translates to: SPHLTIPVHVHS*HAHYSQSLSLP
Trigger: GGGGAGGGAGAGTGACTGTGAATAATGAGCATGTCAGCTGTGCACATGTACTGGTATTGTCAGATGTGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CCA 72 bp GTAAGGTCAGTGCATCAAGCTGTAAACATGCAATCTTaGCTCTGCCTGATGCGGATCTTCTCTCCTTCCGTT +
Preference number: 3 (lower is better)
Translates to: VRSVHQAVNMQS*LCLMRIFSPSV
Trigger: AACGGAAGGAGAGAAGATCCGCATCAGGCAGAGCCAAGATTGCATGTTTACAGCTTGATGCACTGACCTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR-3UTR CAA 90 bp GAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTCTTGTCTATAACCAGGCTTCTTaGTCAGTATTGGTCAACTCC +
Preference number: 3 (lower is better)
Translates to: EWLLLLLLVQLVQPACLVYNQAS*SVLVNS
Trigger: GGAGTTGACCAATACTGACAAAGAAGCCTGGTTATA...GACAAGACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR GCA 72 bp ACATCTGACAATACCAGTACATGTGCACAGCTGACATaGTCATTATTCACAGTCACTCTCCCTCCCCAAAGC +
Preference number: 3 (lower is better)
Translates to: TSDNTSTCAQLT*SLFTVTLPPQS
Trigger: GCTTTGGGGAGGGAGAGTGACTGTGAATAATGAGCATGTCAGCTGTGCACATGTACTGGTATTGTCAGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CCA 72 bp ACTCTGGTAAAGTCATTCAACACGCACCATCTTCCATaGCTTCCCATGGTTGTAAGGTCAGTGCATCAAGCT +
Preference number: 3 (lower is better)
Translates to: TLVKSFNTHHLP*LPMVVRSVHQA
Trigger: AGCTTGATGCACTGACCTTACAACCATGGGAAGCCATGGAAGATGGTGCGTGTTGAATGACTTTACCAGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR-3UTR CAA 90 bp ATGCTCATTATTCACAGTCACTCTCCCTCCCCAAAGCAGGCAATCTGCTGTTTTTTTTCAGGGGTCCAATaGGTCATTACATCAAGAAAA +
Preference number: 3 (lower is better)
Translates to: MLIIHSHSPSPKQAICCFFSGVQ*VITSRK
Trigger: TTTTCTTGATGTAATGACCAATTGGACCCCTGAAAA...AAAACAGCAGATTGCCTGCTTTGGGGAGGGAGAGTGACTGTGAATAATGAGCAT
42% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CCA 72 bp AAGCTTTCCATTATAACCAGGCTTCTTTGTCAGTATTaGTCAACTCCAGAAGGAGTAGTTTCTCCACATCTG +
Preference number: 3 (lower is better)
Translates to: KLSIITRLLCQY*STPEGVVSPHL
Trigger: CAGATGTGGAGAAACTACTCCTTCTGGAGTTGACCAATACTGACAAAGAAGCCTGGTTATAATGGAAAGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CCA 72 bp AAATGTCATTTCATGTGTGATGTGTTAGTCATAGAGTaGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAA +
Preference number: 3 (lower is better)
Translates to: KCHFMCDVLVIE*LLLLLLVQLVQ
Trigger: TTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGACTAACACATCACACATGAAATGACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR TCA 90 bp TGTAAACATGCAATCTTGGCTCTGCCTGATGCGGATCTTCTCTCCTTCCGTTGCCGGTCAGATAGGCCTTaGTGGAGGAGAGGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: CKHAILALPDADLLSFRCRSDRP*WRRGSG
Trigger: GCCAGAACCTCTCCTCCATCAAGGCCTATCTGACCG...GCAACGGAAGGAGAGAAGATCCGCATCAGGCAGAGCCAAGATTGCATGTTTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR TCA 90 bp AGTCATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTTCTCCTCAGAAGCATaGGCCAGGGCCACACTCACC +
Preference number: 4 (lower is better)
Translates to: SHRVAFASFTGPAGPTSMFSSEA*ARATLT
Trigger: GGTGAGTGTGGCCCTGGCTCATGCTTCTGAGGAGAA...CATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR GCA 90 bp TACTGGTCCAGCTGGTCCAACCAGCATGTCTTGTCTTACTTCCAGTCTGCTTGCCTGGCGGATGAAATCTaGCAGGGCCTTTGTCTCTTT +
Preference number: 4 (lower is better)
Translates to: YWSSWSNQHVLSYFQSACLADEI*QGLCLF
Trigger: AAAGAGACAAAGGCCCTGGCAGATTTCATCCGCCAG...GCAAGCAGACTGGAAGTAAGACAAGACATGCTGGTTGGACCAGCTGGACCAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR TCA 90 bp ATGCTCATTATTCACAGTCACTCTCCCTCCCCAAAGCAGGCAATCTGCTGTTTTAGAGGTTCTGGCGGATaGAATCTGCCAGGGCCTTTG +
Preference number: 4 (lower is better)
Translates to: MLIIHSHSPSPKQAICCFRGSGG*NLPGPL
Trigger: CAAAGGCCCTGGCAGATTTCATCCGCCAGAACCTCT...AAAACAGCAGATTGCCTGCTTTGGGGAGGGAGAGTGACTGTGAATAATGAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp TACTGGTCCAGCTGGTCCAACCAGCATGTCTTGTCTTACTTCCAGTCTGCTTGCATCCACTCTCTTGCGTaGAAACCACAGTCGATGAAG +
Preference number: 4 (lower is better)
Translates to: YWSSWSNQHVLSYFQSACIHSLA*KPQSMK
Trigger: CTTCATCGACTGTGGTTTCCACGCAAGAGAGTGGAT...GCAAGCAGACTGGAAGTAAGACAAGACATGCTGGTTGGACCAGCTGGACCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp AGTCATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGATGGAGGAGAGGTTCTaGCGGATGAAATCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: SHRVAFASFTGPAGPTSMMEERF*RMKSAR
Trigger: CCTGGCAGATTTCATCCGCCAGAACCTCTCCTCCAT...CATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp TGTAAACATGCAATCTTGGCTCTGCCTGATGCGGATCTTCTCTCCTTCCGTTGCGGCCATATGTGTACTTaGTGCCATGCAGAGTGGAAA +
Preference number: 4 (lower is better)
Translates to: CKHAILALPDADLLSFRCGHMCT*CHAEWK
Trigger: TTTCCACTCTGCATGGCACCAAGTACACATATGGCC...GCAACGGAAGGAGAGAAGATCCGCATCAGGCAGAGCCAAGATTGCATGTTTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CAA 72 bp TTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTCTaGTCTTACTTCCAGTCTGCTTGCCACAATCAGCTC +
Preference number: 4 (lower is better)
Translates to: FFYWSSWSNQHV*SYFQSACHNQL
Trigger: GAGCTGATTGTGGCAAGCAGACTGGAAGTAAGACAAGACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR GCA 90 bp AGTCATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGAGAAATCCACTCTCTTaGGTGGAAACCACAGTCGAT +
Preference number: 4 (lower is better)
Translates to: SHRVAFASFTGPAGPTSMRNPLS*VETTVD
Trigger: ATCGACTGTGGTTTCCACGCAAGAGAGTGGATTTCT...CATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp ATGCTCATTATTCACAGTCACTCTCCCTCCCCAAAGCAGGCAATCTGCTGTTTTCCCAGTTGTTGTACTTaGTGTAGCTGTGTCCACTTG +
Preference number: 4 (lower is better)
Translates to: MLIIHSHSPSPKQAICCFPSCCT*CSCVHL
Trigger: CAAGTGGACACAGCTACACCAAGTACAACAACTGGG...AAAACAGCAGATTGCCTGCTTTGGGGAGGGAGAGTGACTGTGAATAATGAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp CATTATTCACAGTCACTCTCCCTCCCCAAAGCAGGCAATCTGCTGTTTTCCAATGATCGTTGTAGCTCCTaGGCCATATGTGTACTTGGT +
Preference number: 4 (lower is better)
Translates to: HYSQSLSLPKAGNLLFSNDRCSS*AICVLG
Trigger: ACCAAGTACACATATGGCCCAGGAGCTACAACGATC...ATTGGAAAACAGCAGATTGCCTGCTTTGGGGAGGGAGAGTGACTGTGAATAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR TCA 90 bp ATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTCTTCATAGCCGTCAATGTTaGCCACAGGCAGAACATAAA +
Preference number: 4 (lower is better)
Translates to: IEWLLLLLLVQLVQPACLHSRQC*PQAEHK
Trigger: TTTATGTTCTGCCTGTGGTCAACATTGACGGCTATG...AAGACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR TCA 90 bp CCATGGCTTCCCATGGTTGTAAGGTCAGTGCATCAAGCTGTAAACATGCAATCTCTTTGTCTCTTTTTCTaGCTCTGGAGTTGGTCCACA +
Preference number: 4 (lower is better)
Translates to: PWLPMVVRSVHQAVNMQSLCLFF*LWSWST
Trigger: TGTGGACCAACTCCAGAGTCAGAAAAAGAGACAAAG...AGATTGCATGTTTACAGCTTGATGCACTGACCTTACAACCATGGGAAGCCATGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR TCA 90 bp AGTCATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGAATTGGCAATGTACTTaGCTGCAAGCATTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: SHRVAFASFTGPAGPTSMNWQCT*LQALSP
Trigger: AGGAGACAATGCTTGCAGTCAAGTACATTGCCAATT...CATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR GCA 90 bp ATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTCTTCATATGTGTACTTGGTaGCATGCAGAGTGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: IEWLLLLLLVQLVQPACLHMCTW*HAEWKA
Trigger: AGCTTTCCACTCTGCATGGCACCAAGTACACATATG...AAGACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR TCA 90 bp AACCAGGCTTCTTTGTCAGTATTGGTCAACTCCAGAAGGAGTAGTTTCTCCACAGTGTTGGCTAGTTCCTaGATTAAGCTGACGTCATCT +
Preference number: 4 (lower is better)
Translates to: NQASLSVLVNSRRSSFSTVLASS*IKLTSS
Trigger: AGATGACGTCAGCTTAATTCAGGAACTAGCCAACAC...TGTGGAGAAACTACTCCTTCTGGAGTTGACCAATACTGACAAAGAAGCCTGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR GCA 90 bp ATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTCTTAAACCACTGACAGAATaGAGGAGAAATCCACTCTCT +
Preference number: 4 (lower is better)
Translates to: IEWLLLLLLVQLVQPACLKPLTE*RRNPLS
Trigger: AGAGAGTGGATTTCTCCTGCATTCTGTCAGTGGTTT...AAGACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp GAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTCTTGTCCTTAGAAACAAGGTCTaGATTATCATTGGCAACTTG +
Preference number: 4 (lower is better)
Translates to: EWLLLLLLVQLVQPACLVLRNKV*IIIGNL
Trigger: CAAGTTGCCAATGATAATCCAGACCTTGTTTCTAAG...GACAAGACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp CATTATTCACAGTCACTCTCCCTCCCCAAAGCAGGCAATCTGCTGTTTTCCAATCATCAAAATTTCTGTTaGGGTCTACACCAAAGCAGG +
Preference number: 4 (lower is better)
Translates to: HYSQSLSLPKAGNLLFSNHQNFC*GLHQSR
Trigger: CCTGCTTTGGTGTAGACCCCAACAGAAATTTTGATG...ATTGGAAAACAGCAGATTGCCTGCTTTGGGGAGGGAGAGTGACTGTGAATAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CAA 72 bp CATTTCATGTGTGATGTGTTAGTCATAGAGTGGCTTTaGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCA +
Preference number: 4 (lower is better)
Translates to: HFMCDVLVIEWL*LLLLVQLVQPA
Trigger: TGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGACTAACACATCACACATGAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR GCA 90 bp AGAATCTGCAAACCTCCAAACAAACGAAGTCACATCAGACAAGGAATGAACAGTGTGTACTTGGTGCCATaGAGAGTGGAAAGCTCCTTT +
Preference number: 4 (lower is better)
Translates to: RICKPPNKRSHIRQGMNSVYLVP*RVESSF
Trigger: AAAGGAGCTTTCCACTCTGCATGGCACCAAGTACAC...ACTGTTCATTCCTTGTCTGATGTGACTTCGTTTGTTTGGAGGTTTGCAGATTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp AGTCATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGAGAAATCAATCTGTTTaGTGTTGGCTAGTTCCTGAA +
Preference number: 4 (lower is better)
Translates to: SHRVAFASFTGPAGPTSMRNQSV*CWLVPE
Trigger: TTCAGGAACTAGCCAACACCAAACAGATTGATTTCT...CATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp TCCAGTCTGCTTGCCACAATCAGCTCTTCCAAGAAGACTCTGGTAAAGTCATTCGGTCTGGATTATCATTaGCAACTTGTTGAATCCATG +
Preference number: 4 (lower is better)
Translates to: SSLLATISSSKKTLVKSFGLDYH*QLVESM
Trigger: CATGGATTCAACAAGTTGCCAATGATAATCCAGACC...GAATGACTTTACCAGAGTCTTCTTGGAAGAGCTGATTGTGGCAAGCAGACTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp CATTATTCACAGTCACTCTCCCTCCCCAAAGCAGGCAATCTGCTGTTTTCCAATGAAGGCAGGCTTATTTaGTCTATCTTTGCCAATCTT +
Preference number: 4 (lower is better)
Translates to: HYSQSLSLPKAGNLLFSNEGRLI*SIFANL
Trigger: AAGATTGGCAAAGATAGACCAAATAAGCCTGCCTTC...ATTGGAAAACAGCAGATTGCCTGCTTTGGGGAGGGAGAGTGACTGTGAATAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR TCA 90 bp AGGAGTAGTTTCTCCACATCTGACAATACCAGTACATGTGCACAGCTGACATGCTATCTTTGCCAATCTTaGGAACATACATGTTACGTC +
Preference number: 4 (lower is better)
Translates to: RSSFSTSDNTSTCAQLTCYLCQS*EHTCYV
Trigger: GACGTAACATGTATGTTCTCAAGATTGGCAAAGATA...GCATGTCAGCTGTGCACATGTACTGGTATTGTCAGATGTGGAGAAACTACTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp CATTATTCACAGTCACTCTCCCTCCCCAAAGCAGGCAATCTGCTGTTTTCCAATTTGTGTAGCAGAATCTaGTTTCCAGAAATCAATCTG +
Preference number: 4 (lower is better)
Translates to: HYSQSLSLPKAGNLLFSNLCSRI*FPEINL
Trigger: CAGATTGATTTCTGGAAACCAGATTCTGCTACACAA...ATTGGAAAACAGCAGATTGCCTGCTTTGGGGAGGGAGAGTGACTGTGAATAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR GCA 90 bp ATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTCTTATCAACGACATCTTCTaGTTTAACATGAAAGTCAAC +
Preference number: 4 (lower is better)
Translates to: IEWLLLLLLVQLVQPACLINDIF*FNMKVN
Trigger: GTTGACTTTCATGTTAAAGCAGAAGATGTCGTTGAT...AAGACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp AGAATCTGCAAACCTCCAAACAAACGAAGTCACATCAGACAAGGAATGAACAGTGTGTGGCTGTCAAACTaGGATTCCAGAATATGTTTC +
Preference number: 4 (lower is better)
Translates to: RICKPPNKRSHIRQGMNSVWLSN*DSRICF
Trigger: GAAACATATTCTGGAATCCCAGTTTGACAGCCACAC...ACTGTTCATTCCTTGTCTGATGTGACTTCGTTTGTTTGGAGGTTTGCAGATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CCA 90 bp AGAATCTGCAAACCTCCAAACAAACGAAGTCACATCAGACAAGGAATGAACAGTCAATCTGTTTGGTGTTaGCTAGTTCCTGAATTAAGC +
Preference number: 4 (lower is better)
Translates to: RICKPPNKRSHIRQGMNSQSVWC*LVPELS
Trigger: GCTTAATTCAGGAACTAGCCAACACCAAACAGATTG...ACTGTTCATTCCTTGTCTGATGTGACTTCGTTTGTTTGGAGGTTTGCAGATTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
3UTR CAA 72 bp CCATTTGAACAATCACAGGAAGTTCTGGATGTCACTTaGTACGGTATATTGTGGCTTATTTACCCATATTAT +
Preference number: 4 (lower is better)
Translates to: PFEQSQEVLDVT*YGILWLIYPYY
Trigger: ATAATATGGGTAAATAAGCCACAATATACCGTACAAAGTGACATCCAGAACTTCCTGTGATTGTTCAAATGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 90 bp GAGGTTCTGGCGGATGAAATCTGCCAGGGCCTTTGTCTCTTTTTCTaGCTCTGGAGTTGGTCCACAGTAAGTGTCAGAGCAGGGACTCCG +
Preference number: 5 (lower is better)
Translates to: EVLADEICQGLCLFF*LWSWSTVSVRAGTP
Trigger: CGGAGTCCCTGCTCTGACACTTACTGTGGACCAACTCCAGAGTCAGAAAAAGAGACAAAGGCCCTGGCAGATTTCATCCGCCAGAACCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS GCA 90 bp GCCATATGTGTACTTGGTGCCATGCAGAGTGGAAAGCTCCTTTGCTaGACCTTTCACCAGGGCATTCAGCTCCTCATAGTTCTCGGGCAG +
Preference number: 5 (lower is better)
Translates to: AICVLGAMQSGKLLC*TFHQGIQLLIVLGQ
Trigger: CTGCCCGAGAACTATGAGGAGCTGAATGCCCTGGTGAAAGGTGCAGCAAAGGAGCTTTCCACTCTGCATGGCACCAAGTACACATATGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS GCA 90 bp TGGGCCATATGTGTACTTGGTGCCATGCAGAGTGGAAAGCTCCTTTaGTGCACCTTTCACCAGGGCATTCAGCTCCTCATAGTTCTCGGG +
Preference number: 5 (lower is better)
Translates to: WAICVLGAMQSGKLL*CTFHQGIQLLIVLG
Trigger: CCCGAGAACTATGAGGAGCTGAATGCCCTGGTGAAAGGTGCAGCAAAGGAGCTTTCCACTCTGCATGGCACCAAGTACACATATGGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 90 bp CTCGGGCAGCTTATAGTCGTAGGAGTAAGGATAGAGCATCATCTGTaGGTAGGAGTGGACGGTCAGATAGGCCTTGATGGAGGAGAGGTT +
Preference number: 5 (lower is better)
Translates to: LGQLIVVGVRIEHHL*VGVDGQIGLDGGEV
Trigger: AACCTCTCCTCCATCAAGGCCTATCTGACCGTCCACTCCTACTCACAGATGATGCTCTATCCTTACTCCTACGACTATAAGCTGCCCGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CCA 90 bp CAACTTGTTGAATCCATGCCTCTATCGTTTCCCAGTTGTTGTACTTaGTGTAGCTGTGTCCACTTGCACGGGTGTGGCTGTCAAACTGGG +
Preference number: 5 (lower is better)
Translates to: QLVESMPLSFPSCCT*CSCVHLHGCGCQTG
Trigger: CCCAGTTTGACAGCCACACCCGTGCAAGTGGACACAGCTACACCAAGTACAACAACTGGGAAACGATAGAGGCATGGATTCAACAAGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp TGTAAACATGCAATCTTGGCTCTGCCTGATGCGGATCTTCTCTCCTTCCGTTGCGAGAAATCCACTCTCTaGCGTGGAAACCACAGTCGA +
Preference number: 5 (lower is better)
Translates to: CKHAILALPDADLLSFRCEKSTL*RGNHSR
Trigger: TCGACTGTGGTTTCCACGCAAGAGAGTGGATTTCTC...GCAACGGAAGGAGAGAAGATCCGCATCAGGCAGAGCCAAGATTGCATGTTTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp TACTGGTCCAGCTGGTCCAACCAGCATGTCTTGTCTTACTTCCAGTCTGCTTGCTTTCTGACTCTGGAGTaGGTCCACAGTAAGTGTCAG +
Preference number: 5 (lower is better)
Translates to: YWSSWSNQHVLSYFQSACFLTLE*VHSKCQ
Trigger: CTGACACTTACTGTGGACCAACTCCAGAGTCAGAAA...GCAAGCAGACTGGAAGTAAGACAAGACATGCTGGTTGGACCAGCTGGACCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp AAGGTCAGTGCATCAAGCTGTAAACATGCAATCTTGGCTCTGCCTGATGCGGATGGGCCATATGTGTACTaGGTGCCATGCAGAGTGGAA +
Preference number: 5 (lower is better)
Translates to: KVSASSCKHAILALPDADGPYVY*VPCRVE
Trigger: TTCCACTCTGCATGGCACCAAGTACACATATGGCCC...ATCCGCATCAGGCAGAGCCAAGATTGCATGTTTACAGCTTGATGCACTGACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 90 bp ATGTACTTGACTGCAAGCATTGTCTCCTCACAGGTTTGGCGGATCTaGGACTCAGGAAGCAGAAAGCCAAAGAAGCCTTTATCCCGGAGT +
Preference number: 5 (lower is better)
Translates to: MYLTASIVSSQVWRI*DSGSRKPKKPLSRS
Trigger: ACTCCGGGATAAAGGCTTCTTTGGCTTTCTGCTTCCTGAGTCTCAGATCCGCCAAACCTGTGAGGAGACAATGCTTGCAGTCAAGTACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp TGTAAACATGCAATCTTGGCTCTGCCTGATGCGGATCTTCTCTCCTTCCGTTGCAATCTGCCAGGGCCTTaGTCTCTTTTTCTGACTCTG +
Preference number: 5 (lower is better)
Translates to: CKHAILALPDADLLSFRCNLPGP*SLFLTL
Trigger: CAGAGTCAGAAAAAGAGACAAAGGCCCTGGCAGATT...GCAACGGAAGGAGAGAAGATCCGCATCAGGCAGAGCCAAGATTGCATGTTTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS GCA 90 bp CTCTATCGTTTCCCAGTTGTTGTACTTGGTGTAGCTGTGTCCACTTaGACGGGTGTGGCTGTCAAACTGGGATTCCAGAATATGTTTCAC +
Preference number: 5 (lower is better)
Translates to: LYRFPVVVLGVAVST*TGVAVKLGFQNMFH
Trigger: GTGAAACATATTCTGGAATCCCAGTTTGACAGCCACACCCGTGCAAGTGGACACAGCTACACCAAGTACAACAACTGGGAAACGATAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp GTCATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTGCATCAAAATTTCTGTaGGGGTCTACACCAAAGCAG +
Preference number: 5 (lower is better)
Translates to: VIEWLLLLLLVQLVQPACASKFL*GSTPKQ
Trigger: CTGCTTTGGTGTAGACCCCAACAGAAATTTTGATGC...ACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp AGAATCTGCAAACCTCCAAACAAACGAAGTCACATCAGACAAGGAATGAACAGTGAGTGGAAAGCTCCTTaGCTGCACCTTTCACCAGGG +
Preference number: 5 (lower is better)
Translates to: RICKPPNKRSHIRQGMNSEWKAP*LHLSPG
Trigger: CCCTGGTGAAAGGTGCAGCAAAGGAGCTTTCCACTC...ACTGTTCATTCCTTGTCTGATGTGACTTCGTTTGTTTGGAGGTTTGCAGATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp AGTCATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGATCATTGGCAACTTGTaGAATCCATGCCTCTATCGT +
Preference number: 5 (lower is better)
Translates to: SHRVAFASFTGPAGPTSMIIGNL*NPCLYR
Trigger: ACGATAGAGGCATGGATTCAACAAGTTGCCAATGAT...CATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CCA 90 bp CTCTCTTGCGTGGAAACCACAGTCGATGAAGAAGGCAGGCTTATTTaGTCTATCTTTGCCAATCTTGAGAACATACATGTTACGTCCTTC +
Preference number: 5 (lower is better)
Translates to: LSCVETTVDEEGRLI*SIFANLENIHVTSF
Trigger: GAAGGACGTAACATGTATGTTCTCAAGATTGGCAAAGATAGACCAAATAAGCCTGCCTTCTTCATCGACTGTGGTTTCCACGCAAGAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp AGGAGTAGTTTCTCCACATCTGACAATACCAGTACATGTGCACAGCTGACATGCAGAAGGCAGGCTTATTaGGTCTATCTTTGCCAATCT +
Preference number: 5 (lower is better)
Translates to: RSSFSTSDNTSTCAQLTCRRQAY*VYLCQS
Trigger: AGATTGGCAAAGATAGACCAAATAAGCCTGCCTTCT...GCATGTCAGCTGTGCACATGTACTGGTATTGTCAGATGTGGAGAAACTACTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp GTCATAGAGTGGCTTTTGCTTCTTTTACTGGTCCAGCTGGTCCAACCAGCATGTATTATCATTGGCAACTaGTTGAATCCATGCCTCTAT +
Preference number: 5 (lower is better)
Translates to: VIEWLLLLLLVQLVQPACIIIGN*LNPCLY
Trigger: ATAGAGGCATGGATTCAACAAGTTGCCAATGATAAT...ACATGCTGGTTGGACCAGCTGGACCAGTAAAAGAAGCAAAAGCCACTCTATGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS-3UTR CAA 90 bp CCATGGCTTCCCATGGTTGTAAGGTCAGTGCATCAAGCTGTAAACATGCAATCTCTATCTTTGCCAATCTaGAGAACATACATGTTACGT +
Preference number: 5 (lower is better)
Translates to: PWLPMVVRSVHQAVNMQSLSLPI*RTYMLR
Trigger: ACGTAACATGTATGTTCTCAAGATTGGCAAAGATAG...AGATTGCATGTTTACAGCTTGATGCACTGACCTTACAACCATGGGAAGCCATGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CCA 90 bp ACGTCCTTCAAATGTGGTTCCAATGACTCTCTTAGAAACAAGGTCTaGATTATCATTGGCAACTTGTTGAATCCATGCCTCTATCGTTTC +
Preference number: 5 (lower is better)
Translates to: TSFKCGSNDSLRNKV*IIIGNLLNPCLYRF
Trigger: GAAACGATAGAGGCATGGATTCAACAAGTTGCCAATGATAATCCAGACCTTGTTTCTAAGAGAGTCATTGGAACCACATTTGAAGGACGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS GCA 90 bp AACTTCATTCTCCTCGAGAAAGTTCTCCACATCAACGACATCTTCTaGTTTAACATGAAAGTCAACTGTAGTAAGAGGTTTCACTTGTGT +
Preference number: 5 (lower is better)
Translates to: NFILLEKVLHINDIF*FNMKVNCSKRFHLC
Trigger: ACACAAGTGAAACCTCTTACTACAGTTGACTTTCATGTTAAAGCAGAAGATGTCGTTGATGTGGAGAACTTTCTCGAGGAGAATGAAGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 72 bp AACACCCGGTTGCCATCAAAGTTCTCCTCAGAAGCATaGGCCAGGGCCACACTCACCAGGGCCAGTAGCAGC +
Preference number: 6 (lower is better)
Translates to: NTRLPSKFSSEA*ARATLTRASSS
Trigger: GCTGCTACTGGCCCTGGTGAGTGTGGCCCTGGCTCATGCTTCTGAGGAGAACTTTGATGGCAACCGGGTGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CCA 72 bp CTCCTGGGCCATATGTGTACTTGGTGCCATGCAGAGTaGAAAGCTCCTTTGCTGCACCTTTCACCAGGGCAT +
Preference number: 6 (lower is better)
Translates to: LLGHMCTWCHAE*KAPLLHLSPGH
Trigger: ATGCCCTGGTGAAAGGTGCAGCAAAGGAGCTTTCCACTCTGCATGGCACCAAGTACACATATGGCCCAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CCA 72 bp AGATCCCCCAGCAGCAGGATAGATCGTTGTAGCTCCTaGGCCATATGTGTACTTGGTGCCATGCAGAGTGGA +
Preference number: 6 (lower is better)
Translates to: RSPSSRIDRCSS*AICVLGAMQSG
Trigger: TCCACTCTGCATGGCACCAAGTACACATATGGCCCAGGAGCTACAACGATCTATCCTGCTGCTGGGGGATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 90 bp CTCCGAGAAGCTCCCACTTCACACCAGCCAGCATCAAAATTTCTGTaGGGGTCTACACCAAAGCAGGAACTTCCAGCCGTAGTAGAGCGG +
Preference number: 6 (lower is better)
Translates to: LREAPTSHQPASKFL*GSTPKQELPAVVER
Trigger: CCGCTCTACTACGGCTGGAAGTTCCTGCTTTGGTGTAGACCCCAACAGAAATTTTGATGCTGGCTGGTGTGAAGTGGGAGCTTCTCGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 90 bp CTGGGCCATATGTGTACTTGGTGCCATGCAGAGTGGAAAGCTCCTTaGCTGCACCTTTCACCAGGGCATTCAGCTCCTCATAGTTCTCGG +
Preference number: 6 (lower is better)
Translates to: LGHMCTWCHAEWKAP*LHLSPGHSAPHSSR
Trigger: CCGAGAACTATGAGGAGCTGAATGCCCTGGTGAAAGGTGCAGCAAAGGAGCTTTCCACTCTGCATGGCACCAAGTACACATATGGCCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS GCA 72 bp TGTGTACTTGGTGCCATGCAGAGTGGAAAGCTCCTTTaGTGCACCTTTCACCAGGGCATTCAGCTCCTCATA +
Preference number: 6 (lower is better)
Translates to: CVLGAMQSGKLL*CTFHQGIQLLI
Trigger: TATGAGGAGCTGAATGCCCTGGTGAAAGGTGCAGCAAAGGAGCTTTCCACTCTGCATGGCACCAAGTACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CCA 72 bp GAATCCATGCCTCTATCGTTTCCCAGTTGTTGTACTTaGTGTAGCTGTGTCCACTTGCACGGGTGTGGCTGT +
Preference number: 6 (lower is better)
Translates to: ESMPLSFPSCCT*CSCVHLHGCGC
Trigger: ACAGCCACACCCGTGCAAGTGGACACAGCTACACCAAGTACAACAACTGGGAAACGATAGAGGCATGGATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 72 bp GCTCCCACTTCACACCAGCCAGCATCAAAATTTCTGTaGGGGTCTACACCAAAGCAGGAACTTCCAGCCGTA +
Preference number: 6 (lower is better)
Translates to: APTSHQPASKFL*GSTPKQELPAV
Trigger: TACGGCTGGAAGTTCCTGCTTTGGTGTAGACCCCAACAGAAATTTTGATGCTGGCTGGTGTGAAGTGGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 72 bp ATGTGTACTTGGTGCCATGCAGAGTGGAAAGCTCCTTaGCTGCACCTTTCACCAGGGCATTCAGCTCCTCAT +
Preference number: 6 (lower is better)
Translates to: MCTWCHAEWKAP*LHLSPGHSAPH
Trigger: ATGAGGAGCTGAATGCCCTGGTGAAAGGTGCAGCAAAGGAGCTTTCCACTCTGCATGGCACCAAGTACACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 72 bp GCGGATGAAATCTGCCAGGGCCTTTGTCTCTTTTTCTaGCTCTGGAGTTGGTCCACAGTAAGTGTCAGAGCA +
Preference number: 6 (lower is better)
Translates to: ADEICQGLCLFF*LWSWSTVSVRA
Trigger: TGCTCTGACACTTACTGTGGACCAACTCCAGAGTCAGAAAAAGAGACAAAGGCCCTGGCAGATTTCATCCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS GCA 72 bp TTCCCAGTTGTTGTACTTGGTGTAGCTGTGTCCACTTaGACGGGTGTGGCTGTCAAACTGGGATTCCAGAAT +
Preference number: 6 (lower is better)
Translates to: FPVVVLGVAVST*TGVAVKLGFQN
Trigger: ATTCTGGAATCCCAGTTTGACAGCCACACCCGTGCAAGTGGACACAGCTACACCAAGTACAACAACTGGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 72 bp TTTCCCAGTTGTTGTACTTGGTGTAGCTGTGTCCACTaGCACGGGTGTGGCTGTCAAACTGGGATTCCAGAA +
Preference number: 6 (lower is better)
Translates to: FPSCCTWCSCVH*HGCGCQTGIPE
Trigger: TTCTGGAATCCCAGTTTGACAGCCACACCCGTGCAAGTGGACACAGCTACACCAAGTACAACAACTGGGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 72 bp ACTGCAAGCATTGTCTCCTCACAGGTTTGGCGGATCTaGGACTCAGGAAGCAGAAAGCCAAAGAAGCCTTTA +
Preference number: 6 (lower is better)
Translates to: TASIVSSQVWRI*DSGSRKPKKPL
Trigger: TAAAGGCTTCTTTGGCTTTCTGCTTCCTGAGTCTCAGATCCGCCAAACCTGTGAGGAGACAATGCTTGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 90 bp CCTCTATCGTTTCCCAGTTGTTGTACTTGGTGTAGCTGTGTCCACTaGCACGGGTGTGGCTGTCAAACTGGGATTCCAGAATATGTTTCA +
Preference number: 6 (lower is better)
Translates to: PLSFPSCCTWCSCVH*HGCGCQTGIPEYVS
Trigger: TGAAACATATTCTGGAATCCCAGTTTGACAGCCACACCCGTGCAAGTGGACACAGCTACACCAAGTACAACAACTGGGAAACGATAGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 72 bp CTTATAGTCGTAGGAGTAAGGATAGAGCATCATCTGTaGGTAGGAGTGGACGGTCAGATAGGCCTTGATGGA +
Preference number: 6 (lower is better)
Translates to: LIVVGVRIEHHL*VGVDGQIGLDG
Trigger: TCCATCAAGGCCTATCTGACCGTCCACTCCTACTCACAGATGATGCTCTATCCTTACTCCTACGACTATAAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 72 bp AATGTACTTGACTGCAAGCATTGTCTCCTCACAGGTTaGGCGGATCTGAGACTCAGGAAGCAGAAAGCCAAA +
Preference number: 6 (lower is better)
Translates to: NVLDCKHCLLTG*ADLRLRKQKAK
Trigger: TTTGGCTTTCTGCTTCCTGAGTCTCAGATCCGCCAAACCTGTGAGGAGACAATGCTTGCAGTCAAGTACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 90 bp ATAATTGGCAATGTACTTGACTGCAAGCATTGTCTCCTCACAGGTTaGGCGGATCTGAGACTCAGGAAGCAGAAAGCCAAAGAAGCCTTT +
Preference number: 6 (lower is better)
Translates to: IIGNVLDCKHCLLTG*ADLRLRKQKAKEAF
Trigger: AAAGGCTTCTTTGGCTTTCTGCTTCCTGAGTCTCAGATCCGCCAAACCTGTGAGGAGACAATGCTTGCAGTCAAGTACATTGCCAATTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 72 bp GAGAAATCCACTCTCTTGCGTGGAAACCACAGTCGATaGAGAAGGCAGGCTTATTTGGTCTATCTTTGCCAA +
Preference number: 6 (lower is better)
Translates to: EKSTLLRGNHSR*RRQAYLVYLCQ
Trigger: TTGGCAAAGATAGACCAAATAAGCCTGCCTTCTTCATCGACTGTGGTTTCCACGCAAGAGAGTGGATTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 90 bp AACATAAAAGTCCAGTTCGTCAAGAAGTCGTTTCATGTGGATCTCTaGTTTATAGGTACGGACAGCCTCTCTCACAAACCACTGACAGAA +
Preference number: 6 (lower is better)
Translates to: NIKVQFVKKSFHVDL*FIGTDSLSHKPLTE
Trigger: TTCTGTCAGTGGTTTGTGAGAGAGGCTGTCCGTACCTATAAACAAGAGATCCACATGAAACGACTTCTTGACGAACTGGACTTTTATGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS GCA 72 bp AAGGTCTGGATTATCATTGGCAACTTGTTGAATCCATaGCTCTATCGTTTCCCAGTTGTTGTACTTGGTGTA +
Preference number: 6 (lower is better)
Translates to: KVWIIIGNLLNP*LYRFPVVVLGV
Trigger: TACACCAAGTACAACAACTGGGAAACGATAGAGGCATGGATTCAACAAGTTGCCAATGATAATCCAGACCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CCA 72 bp GTGGAAACCACAGTCGATGAAGAAGGCAGGCTTATTTaGTCTATCTTTGCCAATCTTGAGAACATACATGTT +
Preference number: 6 (lower is better)
Translates to: VETTVDEEGRLI*SIFANLENIHV
Trigger: AACATGTATGTTCTCAAGATTGGCAAAGATAGACCAAATAAGCCTGCCTTCTTCATCGACTGTGGTTTCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 90 bp AATGACTCTCTTAGAAACAAGGTCTGGATTATCATTGGCAACTTGTaGAATCCATGCCTCTATCGTTTCCCAGTTGTTGTACTTGGTGTA +
Preference number: 6 (lower is better)
Translates to: NDSLRNKVWIIIGNL*NPCLYRFPVVVLGV
Trigger: TACACCAAGTACAACAACTGGGAAACGATAGAGGCATGGATTCAACAAGTTGCCAATGATAATCCAGACCTTGTTTCTAAGAGAGTCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 72 bp AGAAGGCAGGCTTATTTGGTCTATCTTTGCCAATCTTaGGAACATACATGTTACGTCCTTCAAATGTGGTTC +
Preference number: 6 (lower is better)
Translates to: RRQAYLVYLCQS*EHTCYVLQMWF
Trigger: GAACCACATTTGAAGGACGTAACATGTATGTTCTCAAGATTGGCAAAGATAGACCAAATAAGCCTGCCTTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS GCA 72 bp CTCCTCGAGAAAGTTCTCCACATCAACGACATCTTCTaGTTTAACATGAAAGTCAACTGTAGTAAGAGGTTT +
Preference number: 6 (lower is better)
Translates to: LLEKVLHINDIF*FNMKVNCSKRF
Trigger: AAACCTCTTACTACAGTTGACTTTCATGTTAAAGCAGAAGATGTCGTTGATGTGGAGAACTTTCTCGAGGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CCA 72 bp AAATGTGGTTCCAATGACTCTCTTAGAAACAAGGTCTaGATTATCATTGGCAACTTGTTGAATCCATGCCTC +
Preference number: 6 (lower is better)
Translates to: KCGSNDSLRNKV*IIIGNLLNPCL
Trigger: GAGGCATGGATTCAACAAGTTGCCAATGATAATCCAGACCTTGTTTCTAAGAGAGTCATTGGAACCACATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 72 bp CTTAGAAACAAGGTCTGGATTATCATTGGCAACTTGTaGAATCCATGCCTCTATCGTTTCCCAGTTGTTGTA +
Preference number: 6 (lower is better)
Translates to: LRNKVWIIIGNL*NPCLYRFPVVV
Trigger: TACAACAACTGGGAAACGATAGAGGCATGGATTCAACAAGTTGCCAATGATAATCCAGACCTTGTTTCTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 72 bp TCTCTTAGAAACAAGGTCTGGATTATCATTGGCAACTaGTTGAATCCATGCCTCTATCGTTTCCCAGTTGTT +
Preference number: 6 (lower is better)
Translates to: SLRNKVWIIIGN*LNPCLYRFPVV
Trigger: AACAACTGGGAAACGATAGAGGCATGGATTCAACAAGTTGCCAATGATAATCCAGACCTTGTTTCTAAGAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS TCA 72 bp AAGTTCTCCACATCAACGACATCTTCTGCTTTAACATaGAAGTCAACTGTAGTAAGAGGTTTCACTTGTGTA +
Preference number: 6 (lower is better)
Translates to: KFSTSTTSSALT*KSTVVRGFTCV
Trigger: TACACAAGTGAAACCTCTTACTACAGTTGACTTTCATGTTAAAGCAGAAGATGTCGTTGATGTGGAGAACTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 90 bp ATCTTCTGCTTTAACATGAAAGTCAACTGTAGTAAGAGGTTTCACTaGTGTAGCAGAATCTGGTTTCCAGAAATCAATCTGTTTGGTGTT +
Preference number: 6 (lower is better)
Translates to: IFCFNMKVNCSKRFH*CSRIWFPEINLFGV
Trigger: AACACCAAACAGATTGATTTCTGGAAACCAGATTCTGCTACACAAGTGAAACCTCTTACTACAGTTGACTTTCATGTTAAAGCAGAAGAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6
CDS CAA 72 bp TTTAACATGAAAGTCAACTGTAGTAAGAGGTTTCACTaGTGTAGCAGAATCTGGTTTCCAGAAATCAATCTG +
Preference number: 6 (lower is better)
Translates to: FNMKVNCSKRFH*CSRIWFPEINL
Trigger: CAGATTGATTTCTGGAAACCAGATTCTGCTACACAAGTGAAACCTCTTACTACAGTTGACTTTCATGTTAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000011607.6