Pregenerated sensors for CPA6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042501Ensembl transcript IDs: ENSMUST00000035577.7, ENSMUST00000153695.8
Found 94 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCGTGAATGCCGCAGTCTATCCAGACAGCTCTTTTGTAGGCTCGTaGTTTTCTGCCCAGCTGCATAATAAAGAGAGGTCTTCCTTCGTA | + |
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Preference number: 1 (lower is better) Translates to: CVNAAVYPDSSFVGS*FSAQLHNKERSSFV Trigger: TACGAAGGAAGACCTCTCTTTATTATGCAGCTGGGCAGAAAATCACGAGCCTACAAAAGAGCTGTCTGGATAGACTGCGGCATTCACGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR GCA 90 bp | TTCAGATTCTGGGAAAGGACCACAGTATGTATCATCACAAGGGTGTaGGGAGGCTCCTTCATCGCACCATTTCACTTTCCAGTTGCGATT | + |
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Preference number: 1 (lower is better) Translates to: FRFWERTTVCIITRV*GGSFIAPFHFPVAI Trigger: AATCGCAACTGGAAAGTGAAATGGTGCGATGAAGGAGCCTCCGCACACCCTTGTGATGATACATACTGTGGTCCTTTCCCAGAATCTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR GCA 90 bp | AAAGTAGGCTGTGCCCTACTTTTCAGTCTTTGCAAAGTGTCGAATTaGATGAAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAAC | + |
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Preference number: 1 (lower is better) Translates to: KVGCALLFSLCKVSN*MKDPFRSMDPSSLN Trigger: GTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTTCATGCAATTCGACACTTTGCAAAGACTGAAAAGTAGGGCACAGCCTACTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| 3UTR GCA 90 bp | CAGTCTAAACAGTTATGTTTGCCAAGGTGCCTTTTGATCAGAATCTaGTTTCTCTGTGTTGGTAGACTAGATGACTGTTCCTCTCAAGGA | + |
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Preference number: 1 (lower is better) Translates to: QSKQLCLPRCLLIRI*FLCVGRLDDCSSQG Trigger: TCCTTGAGAGGAACAGTCATCTAGTCTACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACATAACTGTTTAGACTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR TCA 90 bp | TTCAATGTCGTTGGTAGCATAGGTCTTAATCAAGGATGGAGTGGTTaGGAGAAGAGAAATCCTCAATTAATTTGTACACCTTTTGAGACA | + |
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Preference number: 1 (lower is better) Translates to: FNVVGSIGLNQGWSG*EKRNPQLICTPFET Trigger: TGTCTCAAAAGGTGTACAAATTAATTGAGGATTTCTCTTCTCTCAACCACTCCATCCTTGATTAAGACCTATGCTACCAACGACATTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| 3UTR CAA 90 bp | TGTGCGGAGGCTCCTTCATCGCACCATTTCACTTTCCAGTTGCGATaGGCATCAACTCCACGACAGCGAAACTTAGAGTCTCTTGACCGG | + |
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Preference number: 2 (lower is better) Translates to: CAEAPSSHHFTFQLR*ASTPRQRNLESLDR Trigger: CCGGTCAAGAGACTCTAAGTTTCGCTGTCGTGGAGTTGATGCCAATCGCAACTGGAAAGTGAAATGGTGCGATGAAGGAGCCTCCGCACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR CAA 90 bp | CAAGGGTGTGCGGAGGCTCCTTCATCGCACCATTTCACTTTCCAGTaGCGATTGGCATCAACTCCACGACAGCGAAACTTAGAGTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: QGCAEAPSSHHFTFQ*RLASTPRQRNLESL Trigger: AAGAGACTCTAAGTTTCGCTGTCGTGGAGTTGATGCCAATCGCAACTGGAAAGTGAAATGGTGCGATGAAGGAGCCTCCGCACACCCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR-3UTR GCA 90 bp | GATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTATGTACCGACCGAAGTaGCTTCACAGCTTTGTGAGC | + |
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Preference number: 2 (lower is better) Translates to: DPFRSMDPSSLNSYVCQGMYRPK*LHSFVS Trigger: GCTCACAAAGCTGTGAAGGCACTTCGGTCGGTACAT...ACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR-3UTR CCA 90 bp | ATGAAAAGACAGGTACGCCCTGATGCGCTTTCTGTGTTTTCGAAGGAAGTTAGCTACAGCCTTCACTTCTaGTTCAGATTCTGGGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: MKRQVRPDALSVFSKEVSYSLHF*FRFWER Trigger: CCTTTCCCAGAATCTGAACCAGAAGTGAAGGCTGTA...GCTAACTTCCTTCGAAAACACAGAAAGCGCATCAGGGCGTACCTGTCTTTTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR-3UTR GCA 90 bp | GAAATCCAAAATGCCCAGTGTCTCGCAGTTCAAAAGCAAATGCATAGGGTATTCACCGATCCATTCTCTTaGGTGAATGCCGCAGTCTAT | + |
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Preference number: 2 (lower is better) Translates to: EIQNAQCLAVQKQMHRVFTDPFS*VNAAVY Trigger: ATAGACTGCGGCATTCACGCAAGAGAATGGATCGGT...GAATACCCTATGCATTTGCTTTTGAACTGCGAGACACTGGGCATTTTGGATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR-3UTR TCA 90 bp | TGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTAGACTACAAGGATGGAGTGGTTaGGAGAAGAGAAATCCTCAA | + |
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Preference number: 2 (lower is better) Translates to: CLPRCLLIRICFLCVGRLQGWSG*EKRNPQ Trigger: TTGAGGATTTCTCTTCTCTCAACCACTCCATCCTTG...TAGTCTACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| 3UTR-3UTR TCA 90 bp | TGCATGAAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTAAGACAGGTACGCCCTaGTGCGCTTTCTGTGTTTTC | + |
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Preference number: 2 (lower is better) Translates to: CMKDPFRSMDPSSLNSYVKTGTP*CAFCVF Trigger: GAAAACACAGAAAGCGCATCAGGGCGTACCTGTCTT...AACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTTCATGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR CAA 90 bp | CATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCTTTaGATCAGAATCTGCTTTCTCTGTGTTGGTAGACTAGATGACTGT | + |
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Preference number: 2 (lower is better) Translates to: HGSFQSKQLCLPRCL*IRICFLCVGRLDDC Trigger: ACAGTCATCTAGTCTACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| 3UTR-3UTR TCA 90 bp | GATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTAGGTCTTCCTTCGTATaGTCTTCCAATAGAGAACAC | + |
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Preference number: 2 (lower is better) Translates to: DPFRSMDPSSLNSYVCQGRSSFV*SSNREH Trigger: GTGTTCTCTATTGGAAGATCATACGAAGGAAGACCT...ACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR-3UTR TCA 90 bp | GAAATCCAAAATGCCCAGTGTCTCGCAGTTCAAAAGCAAATGCATAGGGTATTCTATCATGTGTCCAGCTaGAATGGTATCCATCGACAT | + |
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Preference number: 2 (lower is better) Translates to: EIQNAQCLAVQKQMHRVFYHVSS*NGIHRH Trigger: ATGTCGATGGATACCATTTCAGCTGGACACATGATA...GAATACCCTATGCATTTGCTTTTGAACTGCGAGACACTGGGCATTTTGGATTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR-3UTR TCA 90 bp | ATGCATAGGGTATTCCATTTTTATAAGCCCAATCCATTGAGTTACCAGAGCTTATGCCAAGGTGCCTTTTaGTCAGAATCTGCTTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: MHRVFHFYKPNPLSYQSLCQGAF*SESAFS Trigger: AGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCA...TAAGCTCTGGTAACTCAATGGATTGGGCTTATAAAAATGGAATACCCTATGCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR-3UTR GCA 90 bp | AAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAACTTTTGATCAGAATCTaGTTTCTCTGTGTTGGTAGA | + |
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Preference number: 2 (lower is better) Translates to: KDPFRSMDPSSLNSYVCQLLIRI*FLCVGR Trigger: TCTACCAACACAGAGAAAGCAGATTCTGATCAAAAG...TTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| 3UTR-3UTR GCA 90 bp | TGCATGAAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTCTACTTTTCAGTCTTTaGAAAGTGTCGAATTGCATG | + |
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Preference number: 2 (lower is better) Translates to: CMKDPFRSMDPSSLNSYVLLFSL*KVSNCM Trigger: CATGCAATTCGACACTTTGCAAAGACTGAAAAGTAG...AACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTTCATGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| 3UTR-3UTR CAA 90 bp | TCAGATTCTGGGAAAGGACCACAGTATGTATCATCACAAGGGTGTGCGGAGGCTACTTTCCAGTTGCGATaGGCATCAACTCCACGACAG | + |
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Preference number: 3 (lower is better) Translates to: SDSGKGPQYVSSQGCAEATFQLR*ASTPRQ Trigger: CTGTCGTGGAGTTGATGCCAATCGCAACTGGAAAGT...AGCCTCCGCACACCCTTGTGATGATACATACTGTGGTCCTTTCCCAGAATCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR GCA 72 bp | TGGGAAAGGACCACAGTATGTATCATCACAAGGGTGTaGGGAGGCTCCTTCATCGCACCATTTCACTTTCCA | + |
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Preference number: 3 (lower is better) Translates to: WERTTVCIITRV*GGSFIAPFHFP Trigger: TGGAAAGTGAAATGGTGCGATGAAGGAGCCTCCGCACACCCTTGTGATGATACATACTGTGGTCCTTTCCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR CCA 72 bp | CAATCCATTGAGTTACCAGAGCTTACATACAGTGTTTaGGAGGCGGGGCCATGTCTGTATCGGATCCCATGT | + |
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Preference number: 3 (lower is better) Translates to: QSIELPELTYSV*EAGPCLYRIPC Trigger: ACATGGGATCCGATACAGACATGGCCCCGCCTCCCAAACACTGTATGTAAGCTCTGGTAACTCAATGGATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR TCA 72 bp | GCCCAGCTGCATAATAAAGAGAGGTCTTCCTTCGTATaGTCTTCCAATAGAGAACACTCGAACGAGGCCTGG | + |
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Preference number: 3 (lower is better) Translates to: AQLHNKERSSFV*SSNREHSNEAW Trigger: CCAGGCCTCGTTCGAGTGTTCTCTATTGGAAGATCATACGAAGGAAGACCTCTCTTTATTATGCAGCTGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR TCA 72 bp | GCCGCAGTCTATCCAGACAGCTCTTTTGTAGGCTCGTaGTTTTCTGCCCAGCTGCATAATAAAGAGAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: AAVYPDSSFVGS*FSAQLHNKERS Trigger: AGACCTCTCTTTATTATGCAGCTGGGCAGAAAATCACGAGCCTACAAAAGAGCTGTCTGGATAGACTGCGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR TCA 72 bp | GTTCCTCTCAAGGACATTTCTTTAGCAGGTGCATTGTaGTATTCTTCACAGCCAGCATGGTCTCTGTGCAGG | + |
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Preference number: 3 (lower is better) Translates to: VPLKDISLAGAL*YSSQPAWSLCR Trigger: CCTGCACAGAGACCATGCTGGCTGTGAAGAATATCACAATGCACCTGCTAAAGAAATGTCCTTGAGAGGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR GCA 72 bp | TGTGCCCTACTTTTCAGTCTTTGCAAAGTGTCGAATTaGATGAAAGATCCTTTTAGGTCCATGGATCCTTCC | + |
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Preference number: 3 (lower is better) Translates to: CALLFSLCKVSN*MKDPFRSMDPS Trigger: GGAAGGATCCATGGACCTAAAAGGATCTTTCATGCAATTCGACACTTTGCAAAGACTGAAAAGTAGGGCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| 3UTR TCA 72 bp | TGCATAGGGTATTCCATTTTTATAAGCCCAATCCATTaGGTTACCAGAGCTTACATACAGTGTTTGGGAGGC | + |
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Preference number: 3 (lower is better) Translates to: CIGYSIFISPIH*VTRAYIQCLGG Trigger: GCCTCCCAAACACTGTATGTAAGCTCTGGTAACTCAATGGATTGGGCTTATAAAAATGGAATACCCTATGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR-3UTR CAA 90 bp | GATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTTCCACACAGCTAAAATaGGGGATTGTTGCATATTTG | + |
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Preference number: 3 (lower is better) Translates to: DPFRSMDPSSLNSYVCQGSTQLK*GIVAYL Trigger: CAAATATGCAACAATCCCCAATTTTAGCTGTGTGGA...ACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| 3UTR GCA 72 bp | ATAAAGTGGACTTTCTTCTCATACCAAAGTAGGCTGTaGCCTACTTTTCAGTCTTTGCAAAGTGTCGAATTG | + |
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Preference number: 3 (lower is better) Translates to: IKWTFFSYQSRL*PTFQSLQSVEL Trigger: CAATTCGACACTTTGCAAAGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACTTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| 3UTR CAA 72 bp | GCGGAGGCTCCTTCATCGCACCATTTCACTTTCCAGTaGCGATTGGCATCAACTCCACGACAGCGAAACTTA | + |
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Preference number: 4 (lower is better) Translates to: AEAPSSHHFTFQ*RLASTPRQRNL Trigger: TAAGTTTCGCTGTCGTGGAGTTGATGCCAATCGCAACTGGAAAGTGAAATGGTGCGATGAAGGAGCCTCCGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| CDS-3UTR CCA 90 bp | CCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCAGAAAAGCTGCTGTGTaGCTCCTGGGATTCCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: PFRSMDPSSLNSYVCQGARKAAV*LLGFPR Trigger: CCTCGGGAATCCCAGGAGCCACACAGCAGCTTTTCT...GGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| CDS-3UTR GCA 90 bp | AAAAGACAGGTACGCCCTGATGCGCTTTCTGTGTTTTCGAAGGAAGTTAGCTACAACCGGCAGAAAAGCTaGTGTGTGGCTCCTGGGATT | + |
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Preference number: 4 (lower is better) Translates to: KRQVRPDALSVFSKEVSYNRQKS*CVAPGI Trigger: AATCCCAGGAGCCACACAGCAGCTTTTCTGCCGGTT...GTAGCTAACTTCCTTCGAAAACACAGAAAGCGCATCAGGGCGTACCTGTCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| CDS-3UTR CCA 90 bp | AGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTTTGCAGAAAAGCTGCTGTGTaGCTCCTGGGATTCCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: SGLSSHTKVGCALLFSLCRKAAV*LLGFPR Trigger: CCTCGGGAATCCCAGGAGCCACACAGCAGCTTTTCT...GCAAAGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| 3UTR CAA 72 bp | GCTCCTTCATCGCACCATTTCACTTTCCAGTTGCGATaGGCATCAACTCCACGACAGCGAAACTTAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: APSSHHFTFQLR*ASTPRQRNLES Trigger: AGACTCTAAGTTTCGCTGTCGTGGAGTTGATGCCAATCGCAACTGGAAAGTGAAATGGTGCGATGAAGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| CDS-3UTR TCA 90 bp | CCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCAAGACAGGTACGCCCTaGTGCGCTTTCTGTGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: PFRSMDPSSLNSYVCQGAKTGTP*CAFCVF Trigger: GAAAACACAGAAAGCGCATCAGGGCGTACCTGTCTT...GGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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| CDS-3UTR TCA 90 bp | TGTATCATCACAAGGGTGTGCGGAGGCTCCTTCATCGCACCATTTCACTTTCCATCTGAAGATCTTCTATaGGGACCCTTAAGTTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: CIITRVCGGSFIAPFHFPSEDLL*GPLSWW Trigger: CCACCAACTTAAGGGTCCTCATAGAAGATCTTCAGA...TGGAAAGTGAAATGGTGCGATGAAGGAGCCTCCGCACACCCTTGTGATGATACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| CDS-3UTR TCA 90 bp | TGTATCATCACAAGGGTGTGCGGAGGCTCCTTCATCGCACCATTTCACTTTCCACTTCGGATTTGGGGATaGGTCTTATCACTTTATCAC | + |
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Preference number: 4 (lower is better) Translates to: CIITRVCGGSFIAPFHFPLRIWG*VLSLYH Trigger: GTGATAAAGTGATAAGACTCATCCCCAAATCCGAAG...TGGAAAGTGAAATGGTGCGATGAAGGAGCCTCCGCACACCCTTGTGATGATACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| CDS-3UTR CCA 90 bp | ATAAAGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTCATAGGAGATACTGCTaGGCTGCCACAGGTCCACCT | + |
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Preference number: 4 (lower is better) Translates to: IKWTFFSYQSRLCPTFQSHRRYC*AATGPP Trigger: AGGTGGACCTGTGGCAGCCCAGCAGTATCTCCTATG...AGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACTTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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| CDS-3UTR CCA 90 bp | CAGTTATGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTTCTTCACAGCCAGCATaGTCTCTGTGCAGGTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: QLCLPRCLLIRICFLCVGSSQPA*SLCRWV Trigger: AACCCACCTGCACAGAGACCATGCTGGCTGTGAAGA...ACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACATAACTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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| 3UTR CAA 72 bp | TCCAATAGAGAACACTCGAACGAGGCCTGGCTGAGTTaGGTTCAGATGGTGCAACCAACTCTGAATATCTTC | + |
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Preference number: 4 (lower is better) Translates to: SNREHSNEAWLS*VQMVQPTLNIF Trigger: GAAGATATTCAGAGTTGGTTGCACCATCTGAACCAAACTCAGCCAGGCCTCGTTCGAGTGTTCTCTATTGGA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
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| CDS-3UTR GCA 90 bp | ATAAAGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTGAGATACTGCTGGGCTaGCACAGGTCCACCTTAAGT | + |
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Preference number: 4 (lower is better) Translates to: IKWTFFSYQSRLCPTFQSEILLG*HRSTLS Trigger: ACTTAAGGTGGACCTGTGGCAGCCCAGCAGTATCTC...AGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACTTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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| CDS-3UTR GCA 90 bp | ATAAAGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTACACATAGGAGATACTaGTGGGCTGCCACAGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: IKWTFFSYQSRLCPTFQSTHRRY*WAATGP Trigger: TGGACCTGTGGCAGCCCAGCAGTATCTCCTATGTGT...AGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACTTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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| CDS-3UTR GCA 90 bp | TTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCTTTATGTACCGACCGAAGTaGCTTCACAGCTTTGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: FRSMDPSSLNSYVCQGAFMYRPK*LHSFVS Trigger: GCTCACAAAGCTGTGAAGGCACTTCGGTCGGTACAT...AAAGGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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| CDS-3UTR CCA 90 bp | ATAAAGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTCACTCGAACGAGGCCTaGCTGAGTTTGGTTCAGATG | + |
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Preference number: 4 (lower is better) Translates to: IKWTFFSYQSRLCPTFQSHSNEA*LSLVQM Trigger: CATCTGAACCAAACTCAGCCAGGCCTCGTTCGAGTG...AGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACTTTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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| CDS-3UTR TCA 90 bp | ATAAAGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTGCCTTCACAGCTTTGTaGGCTGCAAATTCCACACAG | + |
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Preference number: 4 (lower is better) Translates to: IKWTFFSYQSRLCPTFQSAFTAL*AANSTQ Trigger: CTGTGTGGAATTTGCAGCTCACAAAGCTGTGAAGGC...AGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACTTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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| CDS-3UTR GCA 90 bp | AAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAAACCGGCAGAAAAGCTaGTGTGTGGCTCCTGGGATT | + |
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Preference number: 4 (lower is better) Translates to: KDPFRSMDPSSLNSYVCQNRQKS*CVAPGI Trigger: AATCCCAGGAGCCACACAGCAGCTTTTCTGCCGGTT...TTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| CDS-3UTR GCA 90 bp | TGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTAGACTAGTTCTTGAGTGCAAGTaGTTCCTCTTCGGATTTGGG | + |
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Preference number: 4 (lower is better) Translates to: CLPRCLLIRICFLCVGRLVLECK*FLFGFG Trigger: CCCAAATCCGAAGAGGAAGCACTTGCACTCAAGAAC...TAGTCTACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
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| CDS-3UTR GCA 90 bp | CAGTTATGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTATTCTCTTGCGTGAATaGCGCAGTCTATCCAGACAG | + |
|
Preference number: 4 (lower is better) Translates to: QLCLPRCLLIRICFLCVGILLRE*RSLSRQ Trigger: CTGTCTGGATAGACTGCGGCATTCACGCAAGAGAAT...ACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACATAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR GCA 90 bp | TGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTAGACTAACCGATCCATTCTCTTaGGTGAATGCCGCAGTCTAT | + |
|
Preference number: 4 (lower is better) Translates to: CLPRCLLIRICFLCVGRLTDPFS*VNAAVY Trigger: ATAGACTGCGGCATTCACGCAAGAGAATGGATCGGT...TAGTCTACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR GCA 90 bp | TGCATGAAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTATCATCACAAGGGTGTaGGGAGGCTCCTTCATCGCA | + |
|
Preference number: 4 (lower is better) Translates to: CMKDPFRSMDPSSLNSYVIITRV*GGSFIA Trigger: TGCGATGAAGGAGCCTCCGCACACCCTTGTGATGAT...AACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTTCATGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR GCA 90 bp | CCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCAGTAGAAATCCAAAATaGCCAGTGTCTCGCAGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: PFRSMDPSSLNSYVCQGASRNPK*PVSRSS Trigger: TGAACTGCGAGACACTGGGCATTTTGGATTTCTACT...GGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR TCA 90 bp | TTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCTTTAGTAATTGTCCCCTCTaGCACATAGGAGATACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: FRSMDPSSLNSYVCQGAFSNCPL*HIGDTA Trigger: AGCAGTATCTCCTATGTGTCAGAGGGGACAATTACT...AAAGGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR TCA 90 bp | TTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCTTTTTAGCAGGTGCATTGTaGTATTCTTCACAGCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FRSMDPSSLNSYVCQGAFLAGAL*YSSQPA Trigger: TGCTGGCTGTGAAGAATATCACAATGCACCTGCTAA...AAAGGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR GCA 90 bp | TTGATCAGAATCTGCTTTCTCTGTGTTGGTAGACTAGATGACTGTTCCTCTCAAGTTCTTGAGTGCAAGTaGTTCCTCTTCGGATTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LIRICFLCVGRLDDCSSQVLECK*FLFGFG Trigger: CCCAAATCCGAAGAGGAAGCACTTGCACTCAAGAAC...TTGAGAGGAACAGTCATCTAGTCTACCAACACAGAGAAAGCAGATTCTGATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
||
| CDS-3UTR TCA 90 bp | TTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCTTTCTTCGGATTTGGGGATaGGTCTTATCACTTTATCAC | + |
|
Preference number: 4 (lower is better) Translates to: FRSMDPSSLNSYVCQGAFLRIWG*VLSLYH Trigger: GTGATAAAGTGATAAGACTCATCCCCAAATCCGAAG...AAAGGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
||
| CDS-3UTR TCA 90 bp | TTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCTTTTTTTCCACAGCTTTCTaGAGATCTTCTATGAGGACC | + |
|
Preference number: 4 (lower is better) Translates to: FRSMDPSSLNSYVCQGAFFSTAF*RSSMRT Trigger: GGTCCTCATAGAAGATCTTCAGAAAGCTGTGGAAAA...AAAGGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAA 42% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
||
| CDS-3UTR TCA 90 bp | TGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTAGACTAAGGTCTTCCTTCGTATaGTCTTCCAATAGAGAACAC | + |
|
Preference number: 4 (lower is better) Translates to: CLPRCLLIRICFLCVGRLRSSFV*SSNREH Trigger: GTGTTCTCTATTGGAAGATCATACGAAGGAAGACCT...TAGTCTACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR TCA 90 bp | TTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCTTTTATCATGTGTCCAGCTaGAATGGTATCCATCGACAT | + |
|
Preference number: 4 (lower is better) Translates to: FRSMDPSSLNSYVCQGAFYHVSS*NGIHRH Trigger: ATGTCGATGGATACCATTTCAGCTGGACACATGATA...AAAGGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR TCA 90 bp | CAGTTATGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTATAAGCCCAATCCATTaGGTTACCAGAGCTTACATA | + |
|
Preference number: 4 (lower is better) Translates to: QLCLPRCLLIRICFLCVGISPIH*VTRAYI Trigger: TATGTAAGCTCTGGTAACTCAATGGATTGGGCTTAT...ACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACATAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR GCA 90 bp | ATAAAGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTCACAGCTTTGTGAGCTaGAAATTCCACACAGCTAAA | + |
|
Preference number: 4 (lower is better) Translates to: IKWTFFSYQSRLCPTFQSHSFVS*KFHTAK Trigger: TTTAGCTGTGTGGAATTTGCAGCTCACAAAGCTGTG...AGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACTTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CCA 90 bp | CAGTTATGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTTCCACCTTAAGTTGGTaGTATATGTTCTTGAGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: QLCLPRCLLIRICFLCVGSTLSW*YMFLSA Trigger: TGCACTCAAGAACATATACCACCAACTTAAGGTGGA...ACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACATAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CCA 90 bp | TTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCTTTAGGTCCACCTTAAGTTaGTGGTATATGTTCTTGAGT | + |
|
Preference number: 4 (lower is better) Translates to: FRSMDPSSLNSYVCQGAFRSTLS*WYMFLS Trigger: ACTCAAGAACATATACCACCAACTTAAGGTGGACCT...AAAGGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CCA 90 bp | CAGTTATGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTGCATTTTGGGAAATATaGACATCAGTAATTGTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: QLCLPRCLLIRICFLCVGAFWEI*TSVIVP Trigger: GGGGACAATTACTGATGTCCATATTTCCCAAAATGC...ACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACATAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CCA 90 bp | GATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTACGCTAACAGGGTTCTaGAAGCATTTTGGGAAATAT | + |
|
Preference number: 4 (lower is better) Translates to: DPFRSMDPSSLNSYVCQGTLTGF*KHFGKY Trigger: ATATTTCCCAAAATGCTTCCAGAACCCTGTTAGCGT...ACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CCA 90 bp | GATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGATCTTCTGTTTCTCTaGGTTTGCAAGCTGTTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: DPFRSMDPSSLNSYVCQGDLLFL*VCKLFS Trigger: TGAAAACAGCTTGCAAACCCAGAGAAACAGAAGATC...ACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CCA 90 bp | CAGTTATGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTTCTTGTAGGTCAGAATaGCTTCTCTTACAAACCACT | + |
|
Preference number: 4 (lower is better) Translates to: QLCLPRCLLIRICFLCVGSCRSE*LLLQTT Trigger: AGTGGTTTGTAAGAGAAGCCATTCTGACCTACAAGA...ACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACATAACTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CCA 90 bp | AAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAATACAGCCTTCACTTCTaGTTCAGATTCTGGGAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: KDPFRSMDPSSLNSYVCQYSLHF*FRFWER Trigger: CCTTTCCCAGAATCTGAACCAGAAGTGAAGGCTGTA...TTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR TCA 90 bp | AAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAATTTTCCACAGCTTTCTaGAGATCTTCTATGAGGACC | + |
|
Preference number: 4 (lower is better) Translates to: KDPFRSMDPSSLNSYVCQFSTAF*RSSMRT Trigger: GGTCCTCATAGAAGATCTTCAGAAAGCTGTGGAAAA...TTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
||
| CDS-3UTR GCA 90 bp | TGCATGAAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTATTTCACTTTCCAGTTaGGATTGGCATCAACTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: CMKDPFRSMDPSSLNSYVISLSS*DWHQLH Trigger: GTGGAGTTGATGCCAATCGCAACTGGAAAGTGAAAT...AACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTTCATGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CCA 90 bp | AAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAATTCTGGTTCAGATTCTaGGAAAGGACCACAGTATGT | + |
|
Preference number: 4 (lower is better) Translates to: KDPFRSMDPSSLNSYVCQFWFRF*ERTTVC Trigger: ACATACTGTGGTCCTTTCCCAGAATCTGAACCAGAA...TTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| 3UTR CAA 72 bp | ATGCATAGGGTATTCCATTTTTATAAGCCCAATCCATaGAGTTACCAGAGCTTACATACAGTGTTTGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: MHRVFHFYKPNP*SYQSLHTVFGR Trigger: CCTCCCAAACACTGTATGTAAGCTCTGGTAACTCAATGGATTGGGCTTATAAAAATGGAATACCCTATGCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
||
| CDS-3UTR CCA 90 bp | AAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAATGTGTCCAGCTGAAATaGTATCCATCGACATTGAAT | + |
|
Preference number: 4 (lower is better) Translates to: KDPFRSMDPSSLNSYVCQCVQLK*YPSTLN Trigger: ATTCAATGTCGATGGATACCATTTCAGCTGGACACA...TTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS TCA 90 bp | TCTGGAAGCATTTTGGGAAATATGGACATCAGTAATTGTCCCCTCTaGCACATAGGAGATACTGCTGGGCTGCCACAGGTCCACCTTAAG | + |
|
Preference number: 5 (lower is better) Translates to: SGSILGNMDISNCPL*HIGDTAGLPQVHLK Trigger: CTTAAGGTGGACCTGTGGCAGCCCAGCAGTATCTCCTATGTGTCAGAGGGGACAATTACTGATGTCCATATTTCCCAAAATGCTTCCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS GCA 90 bp | GGGCTGCCACAGGTCCACCTTAAGTTGGTGGTATATGTTCTTGAGTaGAAGTGCTTCCTCTTCGGATTTGGGGATGAGTCTTATCACTTT | + |
|
Preference number: 5 (lower is better) Translates to: GLPQVHLKLVVYVLE*KCFLFGFGDESYHF Trigger: AAAGTGATAAGACTCATCCCCAAATCCGAAGAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGTGGACCTGTGGCAGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CAA 90 bp | CCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTGCCACTTTCCAGTTGCGATaGGCATCAACTCCACGACAG | + |
|
Preference number: 5 (lower is better) Translates to: PFRSMDPSSLNSYVCQGATFQLR*ASTPRQ Trigger: CTGTCGTGGAGTTGATGCCAATCGCAACTGGAAAGT...GGCACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS GCA 90 bp | CCACAGGTCCACCTTAAGTTGGTGGTATATGTTCTTGAGTGCAAGTaGTTCCTCTTCGGATTTGGGGATGAGTCTTATCACTTTATCACC | + |
|
Preference number: 5 (lower is better) Translates to: PQVHLKLVVYVLECK*FLFGFGDESYHFIT Trigger: GGTGATAAAGTGATAAGACTCATCCCCAAATCCGAAGAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGTGGACCTGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CAA 90 bp | CAGTTATGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTGCTTCCTCTTCGGATTaGGGGATGAGTCTTATCACT | + |
|
Preference number: 5 (lower is better) Translates to: QLCLPRCLLIRICFLCVGASSSD*GMSLIT Trigger: AGTGATAAGACTCATCCCCAAATCCGAAGAGGAAGC...ACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACATAACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
||
| CDS GCA 90 bp | TCTATGAGGACCCTTAAGTTGGTGGTATATGTTCTTGAGTGCAAGTaGTTCCTCTTCGGATTTGGGGATGAGTCTTATCACTTTATCACC | + |
|
Preference number: 5 (lower is better) Translates to: SMRTLKLVVYVLECK*FLFGFGDESYHFIT Trigger: GGTGATAAAGTGATAAGACTCATCCCCAAATCCGAAGAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGGTCCTCATAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
||
| CDS-3UTR CAA 90 bp | ATAAAGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTGCTTCCTCTTCGGATTaGGGGATGAGTCTTATCACT | + |
|
Preference number: 5 (lower is better) Translates to: IKWTFFSYQSRLCPTFQSASSSD*GMSLIT Trigger: AGTGATAAGACTCATCCCCAAATCCGAAGAGGAAGC...AGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACTTTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
||
| CDS-3UTR CAA 90 bp | TGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTAGACTAGGTTCTGGAAGCATTTaGGGAAATATGGACATCAGT | + |
|
Preference number: 5 (lower is better) Translates to: CLPRCLLIRICFLCVGRLGSGSI*GNMDIS Trigger: ACTGATGTCCATATTTCCCAAAATGCTTCCAGAACC...TAGTCTACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CAA 90 bp | AGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTTTGCTCTGTTTCTCTGGGTTaGCAAGCTGTTTTCATTTTC | + |
|
Preference number: 5 (lower is better) Translates to: SGLSSHTKVGCALLFSLCSVSLG*QAVFIF Trigger: GAAAATGAAAACAGCTTGCAAACCCAGAGAAACAGA...GCAAAGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CAA 90 bp | AGTGGACTTTCTTCTCATACCAAAGTAGGCTGTGCCCTACTTTTCAGTCTTTGCTCCACACAGCTAAAATaGGGGATTGTTGCATATTTG | + |
|
Preference number: 5 (lower is better) Translates to: SGLSSHTKVGCALLFSLCSTQLK*GIVAYL Trigger: CAAATATGCAACAATCCCCAATTTTAGCTGTGTGGA...GCAAAGACTGAAAAGTAGGGCACAGCCTACTTTGGTATGAGAAGAAAGTCCACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CAA 90 bp | TGTTTGCCAAGGTGCCTTTTGATCAGAATCTGCTTTCTCTGTGTTGGTAGACTAATGAGGACCCTTAAGTaGGTGGTATATGTTCTTGAG | + |
|
Preference number: 5 (lower is better) Translates to: CLPRCLLIRICFLCVGRLMRTLK*VVYVLE Trigger: CTCAAGAACATATACCACCAACTTAAGGGTCCTCAT...TAGTCTACCAACACAGAGAAAGCAGATTCTGATCAAAAGGCACCTTGGCAAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
||
| CDS-3UTR CAA 90 bp | AAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAACAGGTCCACCTTAAGTaGGTGGTATATGTTCTTGAG | + |
|
Preference number: 5 (lower is better) Translates to: KDPFRSMDPSSLNSYVCQQVHLK*VVYVLE Trigger: CTCAAGAACATATACCACCAACTTAAGGTGGACCTG...TTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CAA 90 bp | AAAGATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAACATTTCACTTTCCAGTaGCGATTGGCATCAACTCCA | + |
|
Preference number: 5 (lower is better) Translates to: KDPFRSMDPSSLNSYVCQHFTFQ*RLASTP Trigger: TGGAGTTGATGCCAATCGCAACTGGAAAGTGAAATG...TTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS-3UTR CAA 90 bp | GATCCTTTTAGGTCCATGGATCCTTCCAGTCTAAACAGTTATGTTTGCCAAGGTTATAAGCCCAATCCATaGAGTTACCAGAGCTTACAT | + |
|
Preference number: 5 (lower is better) Translates to: DPFRSMDPSSLNSYVCQGYKPNP*SYQSLH Trigger: ATGTAAGCTCTGGTAACTCAATGGATTGGGCTTATA...ACCTTGGCAAACATAACTGTTTAGACTGGAAGGATCCATGGACCTAAAAGGATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS CAA 72 bp | GGAGATACTGCTGGGCTGCCACAGGTCCACCTTAAGTaGGTGGTATATGTTCTTGAGTGCAAGTGCTTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: GDTAGLPQVHLK*VVYVLECKCFL Trigger: GAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGTGGACCTGTGGCAGCCCAGCAGTATCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS GCA 72 bp | AATATTCAAAAGGAGCCAGCAAACCGGCAGAAAAGCTaGTGTGTGGCTCCTGGGATTCCCGAGGAAGTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: NIQKEPANRQKS*CVAPGIPEEVH Trigger: ATGAACTTCCTCGGGAATCCCAGGAGCCACACAGCAGCTTTTCTGCCGGTTTGCTGGCTCCTTTTGAATATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035577.7 ENSMUST00000153695.8 |
||
| CDS CCA 72 bp | GAGATACTGCTGGGCTGCCACAGGTCCACCTTAAGTTaGTGGTATATGTTCTTGAGTGCAAGTGCTTCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: EILLGCHRSTLS*WYMFLSASASS Trigger: AGAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGTGGACCTGTGGCAGCCCAGCAGTATCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS CAA 72 bp | TGCCACAGGTCCACCTTAAGTTGGTGGTATATGTTCTaGAGTGCAAGTGCTTCCTCTTCGGATTTGGGGATG | + |
|
Preference number: 6 (lower is better) Translates to: CHRSTLSWWYMF*SASASSSDLGM Trigger: CATCCCCAAATCCGAAGAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGTGGACCTGTGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS TCA 72 bp | ATTTTGGGAAATATGGACATCAGTAATTGTCCCCTCTaGCACATAGGAGATACTGCTGGGCTGCCACAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: ILGNMDISNCPL*HIGDTAGLPQV Trigger: GACCTGTGGCAGCCCAGCAGTATCTCCTATGTGTCAGAGGGGACAATTACTGATGTCCATATTTCCCAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS GCA 72 bp | CAGGTCCACCTTAAGTTGGTGGTATATGTTCTTGAGTaGAAGTGCTTCCTCTTCGGATTTGGGGATGAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: QVHLKLVVYVLE*KCFLFGFGDES Trigger: AGACTCATCCCCAAATCCGAAGAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGTGGACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
||
| CDS GCA 72 bp | ATGAGGACCCTTAAGTTGGTGGTATATGTTCTTGAGTaGAAGTGCTTCCTCTTCGGATTTGGGGATGAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: MRTLKLVVYVLE*KCFLFGFGDES Trigger: AGACTCATCCCCAAATCCGAAGAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGGTCCTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153695.8 |
||
| CDS GCA 72 bp | CACCTTAAGTTGGTGGTATATGTTCTTGAGTGCAAGTaGTTCCTCTTCGGATTTGGGGATGAGTCTTATCAC | + |
|
Preference number: 6 (lower is better) Translates to: HLKLVVYVLECK*FLFGFGDESYH Trigger: GTGATAAGACTCATCCCCAAATCCGAAGAGGAAGCACTTGCACTCAAGAACATATACCACCAACTTAAGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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| CDS CAA 90 bp | CACCTCGTAGTTGTATTCAGACAGGGATCTTCTGTTTCTCTGGGTTaGCAAGCTGTTTTCATTTTCCACAGCTTTCTGAAGATCTTCTAT | + |
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Preference number: 6 (lower is better) Translates to: HLVVVFRQGSSVSLG*QAVFIFHSFLKIFY Trigger: ATAGAAGATCTTCAGAAAGCTGTGGAAAATGAAAACAGCTTGCAAACCCAGAGAAACAGAAGATCCCTGTCTGAATACAACTACGAGGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035577.7 |
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