Pregenerated sensors for CPA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039070Ensembl transcript IDs: ENSMUST00000049251.6
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTGTTGACGAAGTCTTGTTTCAGGTAGGTACTCAGGGTTCAGGATaGAAAATAGAAAGTAACATTAAACACAGGAGGACAGAAACCAGG | + |
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Preference number: 1 (lower is better) Translates to: AVDEVLFQVGTQGSG*KIESNIKHRRTETR Trigger: CCTGGTTTCTGTCCTCCTGTGTTTAATGTTACTTTCTATTTTGCATCCTGAACCCTGAGTACCTACCTGAAACAAGACTTCGTCAACAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR-3UTR TCA 90 bp | AAACACAGGAGGACAGAAACCAGGAGCCTGAAACGCAGGGCACACCAGAGCCGGAGAAAAGTGTGTTCCTaGGCTGCATACCACTACTGG | + |
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Preference number: 2 (lower is better) Translates to: KHRRTETRSLKRRAHQSRRKVCS*AAYHYW Trigger: CCAGTAGTGGTATGCAGCTCAGGAACACACTTTTCT...CCGGCTCTGGTGTGCCCTGCGTTTCAGGCTCCTGGTTTCTGTCCTCCTGTGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR-3UTR CCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCCCCTGGCACCTCCCATaGTGCCCTACCCAAGGCTAC | + |
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Preference number: 2 (lower is better) Translates to: PILNIYWLMRTHQMLPKSPWHLP*CPTQGY Trigger: GTAGCCTTGGGTAGGGCACCATGGGAGGTGCCAGGG...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR-3UTR CCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCCCACTACTGGGAAGATaGGGCAAGGAGGAGGCGGGG | + |
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Preference number: 2 (lower is better) Translates to: PILNIYWLMRTHQMLPKSPLLGR*GKEEAG Trigger: CCCCGCCTCCTCCTTGCCCCATCTTCCCAGTAGTGG...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR-3UTR TCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCCAGAAACCAGGAGCCTaGAACGCAGGGCACACCAGA | + |
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Preference number: 2 (lower is better) Translates to: PILNIYWLMRTHQMLPKSQKPGA*NAGHTR Trigger: TCTGGTGTGCCCTGCGTTTCAGGCTCCTGGTTTCTG...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR-3UTR TCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCTTTCCCCATGACCCCTaGGAGCCTTGCCTACAACAT | + |
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Preference number: 2 (lower is better) Translates to: PILNIYWLMRTHQMLPKSFPHDP*EPCLQH Trigger: ATGTTGTAGGCAAGGCTCTCAGGGGTCATGGGGAAA...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR-3UTR TCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCGAAATTACAGAGTTCTaGAGACAGGCACTGTCTCCC | + |
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Preference number: 2 (lower is better) Translates to: PILNIYWLMRTHQMLPKSEITEF*RQALSP Trigger: GGGAGACAGTGCCTGTCTTCAGAACTCTGTAATTTC...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR-3UTR GCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCAGTGTGTTCCTGAGCTaGATACCACTACTGGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: PILNIYWLMRTHQMLPKSSVFLS*IPLLGR Trigger: TCTTCCCAGTAGTGGTATGCAGCTCAGGAACACACT...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR-3UTR CCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCGCTCCAGGACAGTCATaGCTACATAAAGAGATCCTG | + |
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Preference number: 2 (lower is better) Translates to: PILNIYWLMRTHQMLPKSAPGQS*LHKEIL Trigger: CAGGATCTCTTTATGTAGCCATGACTGTCCTGGAGC...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR TCA 72 bp | GCACACCAGAGCCGGAGCTGGAGTGTGCTGAGGCCCTaGGATTATCCAGGCTCTAGGGATGATTTAGGACCT | + |
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Preference number: 3 (lower is better) Translates to: AHQSRSWSVLRP*DYPGSRDDLGP Trigger: AGGTCCTAAATCATCCCTAGAGCCTGGATAATCTCAGGGCCTCAGCACACTCCAGCTCCGGCTCTGGTGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR TCA 72 bp | GTAACATTAAACACAGGAGGACAGAAACCAGGAGCCTaGAACGCAGGGCACACCAGAGCCGGAGCTGGAGTG | + |
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Preference number: 3 (lower is better) Translates to: VTLNTGGQKPGA*NAGHTRAGAGV Trigger: CACTCCAGCTCCGGCTCTGGTGTGCCCTGCGTTTCAGGCTCCTGGTTTCTGTCCTCCTGTGTTTAATGTTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR CCA 72 bp | AAATTACAGAGTTCTGAAGACAGGCACTGTCTCCCCTaGCACCTCCCATGGTGCCCTACCCAAGGCTACAGG | + |
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Preference number: 3 (lower is better) Translates to: KLQSSEDRHCLP*HLPWCPTQGYR Trigger: CCTGTAGCCTTGGGTAGGGCACCATGGGAGGTGCCAGGGGAGACAGTGCCTGTCTTCAGAACTCTGTAATTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR-3UTR CAA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCGGGGAAGGGTACAGTTaGACCCCAGGAGCTTCAGGC | + |
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Preference number: 3 (lower is better) Translates to: PILNIYWLMRTHQMLPKSGEGYS*TPGASG Trigger: GCCTGAAGCTCCTGGGGTCAAACTGTACCCTTCCCC...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR GCA 72 bp | ACACTGAGCCTTGTAATGGACAAGAGCTTGACTGTGTaGTCGAGCCAACAGAAAAGAATTAAGATGAGCCAG | + |
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Preference number: 3 (lower is better) Translates to: TLSLVMDKSLTV*SSQQKRIKMSQ Trigger: CTGGCTCATCTTAATTCTTTTCTGTTGGCTCGAGCACACAGTCAAGCTCTTGTCCATTACAAGGCTCAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR GCA 90 bp | AAACACAGGAGGACAGAAACCAGGAGCCTGAAACGCAGGGCACACCAGAGCCGGAGCCAGGGCTTGGGCTaGATTCCTCGCCACATCGTC | + |
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Preference number: 4 (lower is better) Translates to: KHRRTETRSLKRRAHQSRSQGLG*IPRHIV Trigger: GACGATGTGGCGAGGAATGCAGCCCAAGCCCTGGCT...CCGGCTCTGGTGTGCCCTGCGTTTCAGGCTCCTGGTTTCTGTCCTCCTGTGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CCA 90 bp | CAGGCACTGTCTCCCCTGGCACCTCCCATGGTGCCCTACCCAAGGCTACAGGTACTGTCCAGATGGCTGTaGCCTGTGAGATCCACTCAC | + |
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Preference number: 4 (lower is better) Translates to: QALSPLAPPMVPYPRLQVLSRWL*PVRSTH Trigger: GTGAGTGGATCTCACAGGCCACAGCCATCTGGACAG...TACCTGTAGCCTTGGGTAGGGCACCATGGGAGGTGCCAGGGGAGACAGTGCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CCA 90 bp | AAACACAGGAGGACAGAAACCAGGAGCCTGAAACGCAGGGCACACCAGAGCCGGAGAGAAGCCAGGGCTTaGGCTGCATTCCTCGCCACA | + |
|
Preference number: 4 (lower is better) Translates to: KHRRTETRSLKRRAHQSRREARA*AAFLAT Trigger: TGTGGCGAGGAATGCAGCCCAAGCCCTGGCTTCTCT...CCGGCTCTGGTGTGCCCTGCGTTTCAGGCTCCTGGTTTCTGTCCTCCTGTGTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CCA 90 bp | AAACACAGGAGGACAGAAACCAGGAGCCTGAAACGCAGGGCACACCAGAGCCGGCAGGAAGGACTTGACTaGGAGCAAGCTGACAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: KHRRTETRSLKRRAHQSRQEGLD*EQADRR Trigger: CCTTCTGTCAGCTTGCTCCCAGTCAAGTCCTTCCTG...CCGGCTCTGGTGTGCCCTGCGTTTCAGGCTCCTGGTTTCTGTCCTCCTGTGTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CCA 90 bp | CAGGCACTGTCTCCCCTGGCACCTCCCATGGTGCCCTACCCAAGGCTACAGGTAGCTCAGGAAAGTCTGTaGCAATACTGTCCATCTCGT | + |
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Preference number: 4 (lower is better) Translates to: QALSPLAPPMVPYPRLQVAQESL*QYCPSR Trigger: ACGAGATGGACAGTATTGCCACAGACTTTCCTGAGC...TACCTGTAGCCTTGGGTAGGGCACCATGGGAGGTGCCAGGGGAGACAGTGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CCA 90 bp | CAGGCACTGTCTCCCCTGGCACCTCCCATGGTGCCCTACCCAAGGCTACAGGTAACTTCAGAATTGGGGTaGGAGCCATGGTACACTTCA | + |
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Preference number: 4 (lower is better) Translates to: QALSPLAPPMVPYPRLQVTSELG*EPWYTS Trigger: TGAAGTGTACCATGGCTCCCACCCCAATTCTGAAGT...TACCTGTAGCCTTGGGTAGGGCACCATGGGAGGTGCCAGGGGAGACAGTGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR TCA 90 bp | CAGGCACTGTCTCCCCTGGCACCTCCCATGGTGCCCTACCCAAGGCTACAGGTATCCCATGCTTTTGAATaGAATCCACCACCGATTTCA | + |
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Preference number: 4 (lower is better) Translates to: QALSPLAPPMVPYPRLQVSHAFE*NPPPIS Trigger: TGAAATCGGTGGTGGATTTCATTCAAAAGCATGGGA...TACCTGTAGCCTTGGGTAGGGCACCATGGGAGGTGCCAGGGGAGACAGTGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR TCA 90 bp | AAACACAGGAGGACAGAAACCAGGAGCCTGAAACGCAGGGCACACCAGAGCCGGATACATCAGCAGCTGTaGGTAGCTATGCAGGTCAAT | + |
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Preference number: 4 (lower is better) Translates to: KHRRTETRSLKRRAHQSRIHQQL*VAMQVN Trigger: ATTGACCTGCATAGCTACTCACAGCTGCTGATGTAT...CCGGCTCTGGTGTGCCCTGCGTTTCAGGCTCCTGGTTTCTGTCCTCCTGTGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR GCA 90 bp | CAGGCACTGTCTCCCCTGGCACCTCCCATGGTGCCCTACCCAAGGCTACAGGTATCTATCCCTTCATTGTaGTGCATTTCTTCATCTTCG | + |
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Preference number: 4 (lower is better) Translates to: QALSPLAPPMVPYPRLQVSIPSL*CISSSS Trigger: CGAAGATGAAGAAATGCAGCACAATGAAGGGATAGA...TACCTGTAGCCTTGGGTAGGGCACCATGGGAGGTGCCAGGGGAGACAGTGCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CCA 90 bp | AAACACAGGAGGACAGAAACCAGGAGCCTGAAACGCAGGGCACACCAGAGCCGGCATATCCATCAGGATTaGCCACGGGCAACAAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: KHRRTETRSLKRRAHQSRHIHQD*PRATRK Trigger: TTTTCTTGTTGCCCGTGGCCAATCCTGATGGATATG...CCGGCTCTGGTGTGCCCTGCGTTTCAGGCTCCTGGTTTCTGTCCTCCTGTGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR TCA 90 bp | AAACACAGGAGGACAGAAACCAGGAGCCTGAAACGCAGGGCACACCAGAGCCGGGAGATTTCCAGACACTaGGCTTTAAGTGGTCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: KHRRTETRSLKRRAHQSREISRH*ALSGQN Trigger: ATTCTGACCACTTAAAGCTCAGTGTCTGGAAATCTC...CCGGCTCTGGTGTGCCCTGCGTTTCAGGCTCCTGGTTTCTGTCCTCCTGTGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR GCA 90 bp | AGAAATTACAGAGTTCTGAAGACAGGCACTGTCTCCCCTGGCACCTCCCATGGTACGGGCATGGATGCCTaGATTCAACCAAATGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RNYRVLKTGTVSPGTSHGTGMDA*IQPNGW Trigger: CCAGCCATTTGGTTGAATGCAGGCATCCATGCCCGT...ACCATGGGAGGTGCCAGGGGAGACAGTGCCTGTCTTCAGAACTCTGTAATTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| 3UTR CAA 72 bp | CAGAGCCAGGCAGATCTCTGTAAGTTCAAGGCCAGCTaGGTCTATATAGCAAGCTCCAGGACAGTCATGGCT | + |
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Preference number: 4 (lower is better) Translates to: QSQADLCKFKAS*VYIASSRTVMA Trigger: AGCCATGACTGTCCTGGAGCTTGCTATATAGACCAAGCTGGCCTTGAACTTACAGAGATCTGCCTGGCTCTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR GCA 90 bp | AGAAATTACAGAGTTCTGAAGACAGGCACTGTCTCCCCTGGCACCTCCCATGGTACTGGTCCCCTCTCCTaGAAAACTAGCATTCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: RNYRVLKTGTVSPGTSHGTGPLS*KTSIPV Trigger: AACTGGAATGCTAGTTTTGCAGGAGAGGGGACCAGT...ACCATGGGAGGTGCCAGGGGAGACAGTGCCTGTCTTCAGAACTCTGTAATTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR GCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCCTGGATAGACGGTGGTaGAAGTTGGGCCCACTCGGT | + |
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Preference number: 4 (lower is better) Translates to: PILNIYWLMRTHQMLPKSLDRRW*KLGPLG Trigger: ACCGAGTGGGCCCAACTTGCACCACCGTCTATCCAG...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR TCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCCCCGAACATGTTCCATaGTGGTCTTCAGCCCTAGCC | + |
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Preference number: 4 (lower is better) Translates to: PILNIYWLMRTHQMLPKSPEHVP*WSSALA Trigger: GGCTAGGGCTGAAGACCATCATGGAACATGTTCGGG...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CCA 90 bp | AGGAGACCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCATCCACTCACGGGCATaGATGCCTGCATTCAACCAA | + |
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Preference number: 4 (lower is better) Translates to: RRPILNIYWLMRTHQMLPIHSRA*MPAFNQ Trigger: TTGGTTGAATGCAGGCATCCATGCCCGTGAGTGGAT...GGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGGTCTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCGATGATCTGGCTGGCTaGCAAGAGGAAGCCGTAGTA | + |
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Preference number: 4 (lower is better) Translates to: PILNIYWLMRTHQMLPKSDDLAG*QEEAVV Trigger: TACTACGGCTTCCTCTTGCCAGCCAGCCAGATCATC...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR TCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCTGCCTCCTCCCGTGCTaGACTTTAGAACATACATGG | + |
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Preference number: 4 (lower is better) Translates to: PILNIYWLMRTHQMLPKSCLLPC*TLEHTW Trigger: CCATGTATGTTCTAAAGTTCAGCACGGGAGGAGGCA...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR GCA 90 bp | AGGAGACCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCCTCCAATCTTCACTCTaGTCACCAGCTCAGGAAAGT | + |
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Preference number: 4 (lower is better) Translates to: RRPILNIYWLMRTHQMLPLQSSL*SPAQES Trigger: ACTTTCCTGAGCTGGTGAGCAGAGTGAAGATTGGAG...GGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGGTCTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR GCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCACTCACGGGCATGGATaGCTGCATTCAACCAAATGG | + |
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Preference number: 4 (lower is better) Translates to: PILNIYWLMRTHQMLPKSTHGHG*LHSTKW Trigger: CCATTTGGTTGAATGCAGGCATCCATGCCCGTGAGT...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR TCA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCAAGTTCCCATGCTTTTaGATGAAATCCACCACCGAT | + |
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Preference number: 4 (lower is better) Translates to: PILNIYWLMRTHQMLPKSKFPCF*MKSTTD Trigger: ATCGGTGGTGGATTTCATTCAAAAGCATGGGAACTT...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS GCA 90 bp | GCCCACTCGGTACTTAGTGCCCGAGAGAGAAGCCAGGGCTTGGGCTaGATTCCTCGCCACATCGTCCAGCTCCTCAGCATCCGGGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: AHSVLSARERSQGLG*IPRHIVQLLSIRGL Trigger: AAGGCCCCGGATGCTGAGGAGCTGGACGATGTGGCGAGGAATGCAGCCCAAGCCCTGGCTTCTCTCTCGGGCACTAAGTACCGAGTGGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS GCA 90 bp | CTGTCCAGATGGCTGTGGCCTGTGAGATCCACTCACGGGCATGGATaGCTGCATTCAACCAAATGGCTGGCCGCTTCTTGCCTCCTCCCG | + |
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Preference number: 5 (lower is better) Translates to: LSRWLWPVRSTHGHG*LHSTKWLAASCLLP Trigger: CGGGAGGAGGCAAGAAGCGGCCAGCCATTTGGTTGAATGCAGGCATCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCATCTGGACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 90 bp | CTCGCTGTCCAGATGGCTGTGGCCTGTGAGATCCACTCACGGGCATaGATGCCTGCATTCAACCAAATGGCTGGCCGCTTCTTGCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LAVQMAVACEIHSRA*MPAFNQMAGRFLPP Trigger: AGGAGGCAAGAAGCGGCCAGCCATTTGGTTGAATGCAGGCATCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCATCTGGACAGCGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 90 bp | ATCACTGGTCCCCTCTCCTGCAAAACTAGCATTCCAGTTTCTGTTTaGATCGGCTCCAACACAGCGGCTTCCTGGGTTCCGGGACCGCGT | + |
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Preference number: 5 (lower is better) Translates to: ITGPLSCKTSIPVSV*IGSNTAASWVPGPR Trigger: ACGCGGTCCCGGAACCCAGGAAGCCGCTGTGTTGGAGCCGATCCAAACAGAAACTGGAATGCTAGTTTTGCAGGAGAGGGGACCAGTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 90 bp | CCGGGTCCTTTTTATAATCAGTTACAATCTTCCTCGCTGTCCAGATaGCTGTGGCCTGTGAGATCCACTCACGGGCATGGATGCCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: PGPFYNQLQSSSLSR*LWPVRSTHGHGCLH Trigger: ATGCAGGCATCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCATCTGGACAGCGAGGAAGATTGTAACTGATTATAAAAAGGACCCGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS TCA 90 bp | ATAATCAGTTACAATCTTCCTCGCTGTCCAGATGGCTGTGGCCTGTaGGATCCACTCACGGGCATGGATGCCTGCATTCAACCAAATGGC | + |
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Preference number: 5 (lower is better) Translates to: IISYNLPRCPDGCGL*DPLTGMDACIQPNG Trigger: GCCATTTGGTTGAATGCAGGCATCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCATCTGGACAGCGAGGAAGATTGTAACTGATTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CAA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCGAGAGAAGCCAGGGCTaGGGCTGCATTCCTCGCCAC | + |
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Preference number: 5 (lower is better) Translates to: PILNIYWLMRTHQMLPKSERSQG*GCIPRH Trigger: GTGGCGAGGAATGCAGCCCAAGCCCTGGCTTCTCTC...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 90 bp | CCTTTTTATAATCAGTTACAATCTTCCTCGCTGTCCAGATGGCTGTaGCCTGTGAGATCCACTCACGGGCATGGATGCCTGCATTCAACC | + |
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Preference number: 5 (lower is better) Translates to: PFYNQLQSSSLSRWL*PVRSTHGHGCLHST Trigger: GGTTGAATGCAGGCATCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCATCTGGACAGCGAGGAAGATTGTAACTGATTATAAAAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CAA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCACCTCCACTTCAGAATaGGGGTGGGAGCCATGGTAC | + |
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Preference number: 5 (lower is better) Translates to: PILNIYWLMRTHQMLPKSTSTSE*GWEPWY Trigger: GTACCATGGCTCCCACCCCAATTCTGAAGTGGAGGT...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CAA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCCCTGGAGGTCCTCAATaGTCACGGAGTAGTCTAAAC | + |
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Preference number: 5 (lower is better) Translates to: PILNIYWLMRTHQMLPKSPGGPQ*SRSSLN Trigger: GTTTAGACTACTCCGTGACAATTGAGGACCTCCAGG...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS-3UTR CAA 90 bp | CCCATATTGAATATTTATTGGCTTATGAGGACACACCAGATGCTGCCCAAATCCGAAGTTCCCATGCTTTaGAATGAAATCCACCACCGA | + |
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Preference number: 5 (lower is better) Translates to: PILNIYWLMRTHQMLPKSEVPML*NEIHHR Trigger: TCGGTGGTGGATTTCATTCAAAAGCATGGGAACTTC...GGATTTGGGCAGCATCTGGTGTGTCCTCATAAGCCAATAAATATTCAATATGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CAA 90 bp | AGTTGGGCCCACTCGGTACTTAGTGCCCGAGAGAGAAGCCAGGGCTaGGGCTGCATTCCTCGCCACATCGTCCAGCTCCTCAGCATCCGG | + |
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Preference number: 6 (lower is better) Translates to: SWAHSVLSARERSQG*GCIPRHIVQLLSIR Trigger: CCGGATGCTGAGGAGCTGGACGATGTGGCGAGGAATGCAGCCCAAGCCCTGGCTTCTCTCTCGGGCACTAAGTACCGAGTGGGCCCAACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CAA 72 bp | CACTCGGTACTTAGTGCCCGAGAGAGAAGCCAGGGCTaGGGCTGCATTCCTCGCCACATCGTCCAGCTCCTC | + |
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Preference number: 6 (lower is better) Translates to: HSVLSARERSQG*GCIPRHIVQLL Trigger: GAGGAGCTGGACGATGTGGCGAGGAATGCAGCCCAAGCCCTGGCTTCTCTCTCGGGCACTAAGTACCGAGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS GCA 72 bp | GTACTTAGTGCCCGAGAGAGAAGCCAGGGCTTGGGCTaGATTCCTCGCCACATCGTCCAGCTCCTCAGCATC | + |
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Preference number: 6 (lower is better) Translates to: VLSARERSQGLG*IPRHIVQLLSI Trigger: GATGCTGAGGAGCTGGACGATGTGGCGAGGAATGCAGCCCAAGCCCTGGCTTCTCTCTCGGGCACTAAGTAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 72 bp | ACTCGGTACTTAGTGCCCGAGAGAGAAGCCAGGGCTTaGGCTGCATTCCTCGCCACATCGTCCAGCTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: TRYLVPEREARA*AAFLATSSSSS Trigger: TGAGGAGCTGGACGATGTGGCGAGGAATGCAGCCCAAGCCCTGGCTTCTCTCTCGGGCACTAAGTACCGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS GCA 72 bp | TGGCTGTGGCCTGTGAGATCCACTCACGGGCATGGATaGCTGCATTCAACCAAATGGCTGGCCGCTTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: WLWPVRSTHGHG*LHSTKWLAASC Trigger: GCAAGAAGCGGCCAGCCATTTGGTTGAATGCAGGCATCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 72 bp | CAGATGGCTGTGGCCTGTGAGATCCACTCACGGGCATaGATGCCTGCATTCAACCAAATGGCTGGCCGCTTC | + |
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Preference number: 6 (lower is better) Translates to: QMAVACEIHSRA*MPAFNQMAGRF Trigger: GAAGCGGCCAGCCATTTGGTTGAATGCAGGCATCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCATCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 72 bp | ATTGTCGTATGCCCAGTCAACGCTGCTCCCACTAGCTaGATAGACGGTGGTGCAAGTTGGGCCCACTCGGTA | + |
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Preference number: 6 (lower is better) Translates to: IVVCPVNAAPTS*IDGGASWAHSV Trigger: TACCGAGTGGGCCCAACTTGCACCACCGTCTATCCAGCTAGTGGGAGCAGCGTTGACTGGGCATACGACAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS TCA 72 bp | TACAATCTTCCTCGCTGTCCAGATGGCTGTGGCCTGTaGGATCCACTCACGGGCATGGATGCCTGCATTCAA | + |
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Preference number: 6 (lower is better) Translates to: YNLPRCPDGCGL*DPLTGMDACIQ Trigger: TTGAATGCAGGCATCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCATCTGGACAGCGAGGAAGATTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 72 bp | AATCAGTTACAATCTTCCTCGCTGTCCAGATGGCTGTaGCCTGTGAGATCCACTCACGGGCATGGATGCCTG | + |
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Preference number: 6 (lower is better) Translates to: NQLQSSSLSRWL*PVRSTHGHGCL Trigger: CAGGCATCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCATCTGGACAGCGAGGAAGATTGTAACTGATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS TCA 72 bp | ACCAAATGGCTGGCCGCTTCTTGCCTCCTCCCGTGCTaGACTTTAGAACATACATGGGCCGCTTTTCAAATG | + |
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Preference number: 6 (lower is better) Translates to: TKWLAASCLLPC*TLEHTWAAFQM Trigger: CATTTGAAAAGCGGCCCATGTATGTTCTAAAGTTCAGCACGGGAGGAGGCAAGAAGCGGCCAGCCATTTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 72 bp | TTTTATAATCAGTTACAATCTTCCTCGCTGTCCAGATaGCTGTGGCCTGTGAGATCCACTCACGGGCATGGA | + |
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Preference number: 6 (lower is better) Translates to: FYNQLQSSSLSR*LWPVRSTHGHG Trigger: TCCATGCCCGTGAGTGGATCTCACAGGCCACAGCCATCTGGACAGCGAGGAAGATTGTAACTGATTATAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CAA 72 bp | CATCTTCGTTATCTAAAAGGGCCTGGAGGTCCTCAATaGTCACGGAGTAGTCTAAACCCTGGGACTTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: HLRYLKGPGGPQ*SRSSLNPGTSG Trigger: TCCTGAAGTCCCAGGGTTTAGACTACTCCGTGACAATTGAGGACCTCCAGGCCCTTTTAGATAACGAAGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CAA 90 bp | CTCCATAATCGGTTCTGGCTTTGCGTGTACACATATCCATCAGGATaGGCCACGGGCAACAAGAAAATATCCACTTTCTTCAAGATGGAG | + |
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Preference number: 6 (lower is better) Translates to: LHNRFWLCVYTYPSG*ATGNKKISTFFKME Trigger: CTCCATCTTGAAGAAAGTGGATATTTTCTTGTTGCCCGTGGCCAATCCTGATGGATATGTGTACACGCAAAGCCAGAACCGATTATGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS TCA 72 bp | TGCAGGTCAATGAAGCATTTGAAGTTCCCATGCTTTTaGATGAAATCCACCACCGATTTCACCTCCACTTCA | + |
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Preference number: 6 (lower is better) Translates to: CRSMKHLKFPCF*MKSTTDFTSTS Trigger: TGAAGTGGAGGTGAAATCGGTGGTGGATTTCATTCAAAAGCATGGGAACTTCAAATGCTTCATTGACCTGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CCA 72 bp | AAAGTGGAGGGAGATTTCCAGACACTGAGCTTTAAGTaGTCAGAATTCACTAGCTCAGTCAGTTTTCTGATC | + |
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Preference number: 6 (lower is better) Translates to: KVEGDFQTLSFK*SEFTSSVSFLI Trigger: GATCAGAAAACTGACTGAGCTAGTGAATTCTGACCACTTAAAGCTCAGTGTCTGGAAATCTCCCTCCACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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| CDS CAA 72 bp | ATGCAGGTCAATGAAGCATTTGAAGTTCCCATGCTTTaGAATGAAATCCACCACCGATTTCACCTCCACTTC | + |
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Preference number: 6 (lower is better) Translates to: MQVNEAFEVPML*NEIHHRFHLHF Trigger: GAAGTGGAGGTGAAATCGGTGGTGGATTTCATTCAAAAGCATGGGAACTTCAAATGCTTCATTGACCTGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049251.6 |
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