RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CPA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000071553

Ensembl transcript IDs: ENSMUST00000096066.5

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CGTAACCCACTCTCGAGCGTGGATCCCCGCATCAAGCCAGATGGCTaGCTTGTCTCCTCCGGTGCTGAACTTGAGCACATTCATGGGCCG +
Preference number: 5 (lower is better)
Translates to: RNPLSSVDPRIKPDG*LVSSGAELEHIHGP
Trigger: CGGCCCATGAATGTGCTCAAGTTCAGCACCGGAGGAGACAAGCCAGCCATCTGGCTTGATGCGGGGATCCACGCTCGAGAGTGGGTTACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CCA 90 bp TTTGCTGTCCACAGTGCAGTAGCTTGCGTAACCCACTCTCGAGCGTaGATCCCCGCATCAAGCCAGATGGCTGGCTTGTCTCCTCCGGTG +
Preference number: 5 (lower is better)
Translates to: FAVHSAVACVTHSRA*IPASSQMAGLSPPV
Trigger: CACCGGAGGAGACAAGCCAGCCATCTGGCTTGATGCGGGGATCCACGCTCGAGAGTGGGTTACGCAAGCTACTGCACTGTGGACAGCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS TCA 90 bp CAAGGTCATAAGCCCAGTCGATGCTTCCGCCACTGGCCTGGTAGATaGCAGAACAGATGGGTCCCACTTTGTAACTGGTGCCGTGGAGTC +
Preference number: 5 (lower is better)
Translates to: QGHKPSRCFRHWPGR*QNRWVPLCNWCRGV
Trigger: GACTCCACGGCACCAGTTACAAAGTGGGACCCATCTGTTCTGTCATCTACCAGGCCAGTGGCGGAAGCATCGACTGGGCTTATGACCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS GCA 90 bp TGGATCAGTCCCATAATCAGACGCAATCTTATTTGCTGTCCACAGTaGAGTAGCTTGCGTAACCCACTCTCGAGCGTGGATCCCCGCATC +
Preference number: 5 (lower is better)
Translates to: WISPIIRRNLICCPQ*SSLRNPLSSVDPRI
Trigger: GATGCGGGGATCCACGCTCGAGAGTGGGTTACGCAAGCTACTGCACTGTGGACAGCAAATAAGATTGCGTCTGATTATGGGACTGATCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CCA 90 bp AGGCAGCAGGAAGACATCCAGAGTATTGAGAAGAGAAGTGATGGCTaGATCAGTCCCATAATCAGACGCAATCTTATTTGCTGTCCACAG +
Preference number: 5 (lower is better)
Translates to: RQQEDIQSIEKRSDG*ISPIIRRNLICCPQ
Trigger: CTGTGGACAGCAAATAAGATTGCGTCTGATTATGGGACTGATCCAGCCATCACTTCTCTTCTCAATACTCTGGATGTCTTCCTGCTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS GCA 90 bp GCACATTCATGGGCCGATTTTCAAAAGATGAACCGATATTCACTTTaGTCACTAGACCAGGGTTCTCAGCCACGAGGTTATCCATTTCTT +
Preference number: 5 (lower is better)
Translates to: AHSWADFQKMNRYSL*SLDQGSQPRGYPFL
Trigger: AAGAAATGGATAACCTCGTGGCTGAGAACCCTGGTCTAGTGAGCAAAGTGAATATCGGTTCATCTTTTGAAAATCGGCCCATGAATGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CCA 72 bp CTCTCGAGCGTGGATCCCCGCATCAAGCCAGATGGCTaGCTTGTCTCCTCCGGTGCTGAACTTGAGCACATT +
Preference number: 6 (lower is better)
Translates to: LSSVDPRIKPDG*LVSSGAELEHI
Trigger: AATGTGCTCAAGTTCAGCACCGGAGGAGACAAGCCAGCCATCTGGCTTGATGCGGGGATCCACGCTCGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 72 bp CGAGCGTGGATCCCCGCATCAAGCCAGATGGCTGGCTaGTCTCCTCCGGTGCTGAACTTGAGCACATTCATG +
Preference number: 6 (lower is better)
Translates to: RAWIPASSQMAG*SPPVLNLSTFM
Trigger: CATGAATGTGCTCAAGTTCAGCACCGGAGGAGACAAGCCAGCCATCTGGCTTGATGCGGGGATCCACGCTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS GCA 72 bp GACGCAATCTTATTTGCTGTCCACAGTGCAGTAGCTTaGGTAACCCACTCTCGAGCGTGGATCCCCGCATCA +
Preference number: 6 (lower is better)
Translates to: DAILFAVHSAVA*VTHSRAWIPAS
Trigger: TGATGCGGGGATCCACGCTCGAGAGTGGGTTACGCAAGCTACTGCACTGTGGACAGCAAATAAGATTGCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CCA 72 bp TGGGTCCATGGTATGAATCAGAGCAAGGGTTGCTACTaGCTCCAGGTCCTCCGAAATTTGCGTCCCAGTTCC +
Preference number: 6 (lower is better)
Translates to: WVHGMNQSKGCY*LQVLRNLRPSS
Trigger: GGAACTGGGACGCAAATTTCGGAGGACCTGGAGCCAGTAGCAACCCTTGCTCTGATTCATACCATGGACCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 72 bp AGACGCAATCTTATTTGCTGTCCACAGTGCAGTAGCTaGCGTAACCCACTCTCGAGCGTGGATCCCCGCATC +
Preference number: 6 (lower is better)
Translates to: RRNLICCPQCSS*RNPLSSVDPRI
Trigger: GATGCGGGGATCCACGCTCGAGAGTGGGTTACGCAAGCTACTGCACTGTGGACAGCAAATAAGATTGCGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 72 bp GGTGCCGTGGAGTCTTTTCAAAGACTGGGCAGCCCTTaGGGCCACTTCATCCAGCTCATTAAAGTCATCTGG +
Preference number: 6 (lower is better)
Translates to: GAVESFQRLGSP*GHFIQLIKVIW
Trigger: CCAGATGACTTTAATGAGCTGGATGAAGTGGCCCAAAGGGCTGCCCAGTCTTTGAAAAGACTCCACGGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 90 bp CCCATAATCAGACGCAATCTTATTTGCTGTCCACAGTGCAGTAGCTaGCGTAACCCACTCTCGAGCGTGGATCCCCGCATCAAGCCAGAT +
Preference number: 6 (lower is better)
Translates to: PIIRRNLICCPQCSS*RNPLSSVDPRIKPD
Trigger: ATCTGGCTTGATGCGGGGATCCACGCTCGAGAGTGGGTTACGCAAGCTACTGCACTGTGGACAGCAAATAAGATTGCGTCTGATTATGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 90 bp CCCGCATCAAGCCAGATGGCTGGCTTGTCTCCTCCGGTGCTGAACTaGAGCACATTCATGGGCCGATTTTCAAAAGATGAACCGATATTC +
Preference number: 6 (lower is better)
Translates to: PASSQMAGLSPPVLN*STFMGRFSKDEPIF
Trigger: GAATATCGGTTCATCTTTTGAAAATCGGCCCATGAATGTGCTCAAGTTCAGCACCGGAGGAGACAAGCCAGCCATCTGGCTTGATGCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 90 bp TTTGTAACTGGTGCCGTGGAGTCTTTTCAAAGACTGGGCAGCCCTTaGGGCCACTTCATCCAGCTCATTAAAGTCATCTGGCTTGGCACA +
Preference number: 6 (lower is better)
Translates to: FVTGAVESFQRLGSP*GHFIQLIKVIWLGT
Trigger: TGTGCCAAGCCAGATGACTTTAATGAGCTGGATGAAGTGGCCCAAAGGGCTGCCCAGTCTTTGAAAAGACTCCACGGCACCAGTTACAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS GCA 72 bp CCCATAATCAGACGCAATCTTATTTGCTGTCCACAGTaGAGTAGCTTGCGTAACCCACTCTCGAGCGTGGAT +
Preference number: 6 (lower is better)
Translates to: PIIRRNLICCPQ*SSLRNPLSSVD
Trigger: ATCCACGCTCGAGAGTGGGTTACGCAAGCTACTGCACTGTGGACAGCAAATAAGATTGCGTCTGATTATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 90 bp AAGCTCAAGGTGCTCTTCGGCCTCCAGTTGCAGCAGAGTCTTAATTaGCTCTTCATCATTCGGGATCACCTCAAGAACTTGATCTCCCAC +
Preference number: 6 (lower is better)
Translates to: KLKVLFGLQLQQSLN*LFIIRDHLKNLISH
Trigger: GTGGGAGATCAAGTTCTTGAGGTGATCCCGAATGATGAAGAGCAAATTAAGACTCTGCTGCAACTGGAGGCCGAAGAGCACCTTGAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 90 bp GGGGGATTTCCAAAAATCAAGCTCAAGGTGCTCTTCGGCCTCCAGTaGCAGCAGAGTCTTAATTTGCTCTTCATCATTCGGGATCACCTC +
Preference number: 6 (lower is better)
Translates to: GGFPKIKLKVLFGLQ*QQSLNLLFIIRDHL
Trigger: GAGGTGATCCCGAATGATGAAGAGCAAATTAAGACTCTGCTGCAACTGGAGGCCGAAGAGCACCTTGAGCTTGATTTTTGGAAATCCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 72 bp GTGCTCTTCGGCCTCCAGTTGCAGCAGAGTCTTAATTaGCTCTTCATCATTCGGGATCACCTCAAGAACTTG +
Preference number: 6 (lower is better)
Translates to: VLFGLQLQQSLN*LFIIRDHLKNL
Trigger: CAAGTTCTTGAGGTGATCCCGAATGATGAAGAGCAAATTAAGACTCTGCTGCAACTGGAGGCCGAAGAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS GCA 72 bp TGGGCCGATTTTCAAAAGATGAACCGATATTCACTTTaGTCACTAGACCAGGGTTCTCAGCCACGAGGTTAT +
Preference number: 6 (lower is better)
Translates to: WADFQKMNRYSL*SLDQGSQPRGY
Trigger: ATAACCTCGTGGCTGAGAACCCTGGTCTAGTGAGCAAAGTGAATATCGGTTCATCTTTTGAAAATCGGCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 72 bp ATGGGCCGATTTTCAAAAGATGAACCGATATTCACTTaGCTCACTAGACCAGGGTTCTCAGCCACGAGGTTA +
Preference number: 6 (lower is better)
Translates to: MGRFSKDEPIFT*LTRPGFSATRL
Trigger: TAACCTCGTGGCTGAGAACCCTGGTCTAGTGAGCAAAGTGAATATCGGTTCATCTTTTGAAAATCGGCCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 90 bp TTGCTGGTTGAACAGCATCTCTTCACGCTCTTGATCCAACAGAACTaGAACATCTTCGATCATGATGGAATAAGTAATCCCCTGGGACTC +
Preference number: 6 (lower is better)
Translates to: LLVEQHLFTLLIQQN*NIFDHDGISNPLGL
Trigger: GAGTCCCAGGGGATTACTTATTCCATCATGATCGAAGATGTTCAAGTTCTGTTGGATCAAGAGCGTGAAGAGATGCTGTTCAACCAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 90 bp AGCACATTCATGGGCCGATTTTCAAAAGATGAACCGATATTCACTTaGCTCACTAGACCAGGGTTCTCAGCCACGAGGTTATCCATTTCT +
Preference number: 6 (lower is better)
Translates to: STFMGRFSKDEPIFT*LTRPGFSATRLSIS
Trigger: AGAAATGGATAACCTCGTGGCTGAGAACCCTGGTCTAGTGAGCAAAGTGAATATCGGTTCATCTTTTGAAAATCGGCCCATGAATGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5
CDS CAA 72 bp CTCTCTTTGCTGGTTGAACAGCATCTCTTCACGCTCTaGATCCAACAGAACTTGAACATCTTCGATCATGAT +
Preference number: 6 (lower is better)
Translates to: LSLLVEQHLFTL*IQQNLNIFDHD
Trigger: ATCATGATCGAAGATGTTCAAGTTCTGTTGGATCAAGAGCGTGAAGAGATGCTGTTCAACCAGCAAAGAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000096066.5