Pregenerated sensors for CPA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054446Ensembl transcript IDs: ENSMUST00000031806.10
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATCAGACCCCACTGGCCTaGGTGACCCACTCCCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: QTLLGCLNGAKEKKGEGNQTPLA*VTHSLE Trigger: TTCCAGGGAGTGGGTCACTCAGGCCAGTGGGGTCTG...ATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CCA 90 bp | CAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATCCTGGGCTTCGTCGGTaGCAGAGATTCGGAGAACCT | + |
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Preference number: 4 (lower is better) Translates to: QTLLGCLNGAKEKKGEGNPGLRR*QRFGEP Trigger: AGGTTCTCCGAATCTCTGCCACCGACGAAGCCCAGG...ATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CCA 90 bp | ACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAAACGGTGGACAGAGCCCTaGCCTGGAAGGCGGACATCT | + |
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Preference number: 4 (lower is better) Translates to: TLLGCLNGAKEKKGEGNKRWTEP*PGRRTS Trigger: AGATGTCCGCCTTCCAGGCCAGGGCTCTGTCCACCG...TTTATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CCA 90 bp | CAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATTCACGGACTGGATGGTaGGGAAGGGCACTCGAACAT | + |
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Preference number: 4 (lower is better) Translates to: QTLLGCLNGAKEKKGEGNSRTGW*GRALEH Trigger: ATGTTCGAGTGCCCTTCCCCACCATCCAGTCCGTGA...ATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CCA 90 bp | CAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATGCCTTGATGTTCCCGTaGCTCGTCACAAAGTCCACG | + |
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Preference number: 4 (lower is better) Translates to: QTLLGCLNGAKEKKGEGNALMFP*LVTKST Trigger: CGTGGACTTTGTGACGAGCCACGGGAACATCAAGGC...ATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR TCA 90 bp | AATCAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAGTCCACGATGGACTTaGCCTCCACTTCAGAGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: NQTLLGCLNGAKEKKGEGSPRWT*PPLQSW Trigger: CCAACTCTGAAGTGGAGGTCAAGTCCATCGTGGACT...CCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR TCA 90 bp | AATCAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGGTCAGGAGCTGGTTCTaGTGTGTAGCCATAGGGGTA | + |
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Preference number: 4 (lower is better) Translates to: NQTLLGCLNGAKEKKGEGVRSWF*CVAIGV Trigger: TACCCCTATGGCTACACATCAGAACCAGCTCCTGAC...CCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CCA 90 bp | CAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATACCCACTCCCTGGAATaGATGCCAGTGTCAATCCAG | + |
|
Preference number: 4 (lower is better) Translates to: QTLLGCLNGAKEKKGEGNTHSLE*MPVSIQ Trigger: CTGGATTGACACTGGCATCCATTCCAGGGAGTGGGT...ATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR GCA 90 bp | AATCAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGTGCCGATCTGGATCTTaGTTACAAGCTGTGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: NQTLLGCLNGAKEKKGEGCRSGS*LQAVGA Trigger: AGCACCCACAGCTTGTAAGCAAGATCCAGATCGGCA...CCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CCA 90 bp | ACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAAACTTTCACGGACTGGATaGTGGGGAAGGGCACTCGAA | + |
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Preference number: 4 (lower is better) Translates to: TLLGCLNGAKEKKGEGNKLSRTG*WGRALE Trigger: TTCGAGTGCCCTTCCCCACCATCCAGTCCGTGAAAG...TTTATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CCA 90 bp | AATCAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGCCTCCACTTCAGAGTTaGGAAACTTGCCACGGTAAG | + |
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Preference number: 4 (lower is better) Translates to: NQTLLGCLNGAKEKKGEGPPLQS*ETCHGK Trigger: CTTACCGTGGCAAGTTTCCCAACTCTGAAGTGGAGG...CCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR GCA 90 bp | ACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAAAGACGACCTTCAAAGGTaGTGCCGATCTGGATCTTGC | + |
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Preference number: 4 (lower is better) Translates to: TLLGCLNGAKEKKGEGNKDDLQR*CRSGSC Trigger: GCAAGATCCAGATCGGCAGCACCTTTGAAGGTCGTC...TTTATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR GCA 90 bp | AATCAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGACTCCCTGGAATGGATaGCAGTGTCAATCCAGATTG | + |
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Preference number: 4 (lower is better) Translates to: NQTLLGCLNGAKEKKGEGTPWNG*QCQSRL Trigger: CAATCTGGATTGACACTGGCATCCATTCCAGGGAGT...CCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR GCA 90 bp | ACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAAAAAGTCCAACTTCAAGTaGTCCAACTCCTCCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: TLLGCLNGAKEKKGEGNKKSNFK*SNSSSS Trigger: GGAGCTGGAGGAGTTGGAGCACTTGAAGTTGGACTT...TTTATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR GCA 90 bp | ACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAAAGACCTTCAAAGGTGCTaGCGATCTGGATCTTGCTTA | + |
|
Preference number: 4 (lower is better) Translates to: TLLGCLNGAKEKKGEGNKDLQRC*RSGSCL Trigger: TAAGCAAGATCCAGATCGGCAGCACCTTTGAAGGTC...TTTATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR GCA 90 bp | AATCAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGATGATATTCCAAGAATaGTTTCACGGACTGGATGGT | + |
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Preference number: 4 (lower is better) Translates to: NQTLLGCLNGAKEKKGEGMIFQE*FHGLDG Trigger: ACCATCCAGTCCGTGAAAGCATTCTTGGAATATCAT...CCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTGATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR GCA 90 bp | ACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAAATGTGTGATCGAGTTTTaGGCCACATGCGATTCGTTT | + |
|
Preference number: 4 (lower is better) Translates to: TLLGCLNGAKEKKGEGNKCVIEF*ATCDSF Trigger: AAACGAATCGCATGTGGCGCAAAACTCGATCACACA...TTTATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS GCA 90 bp | TTCTGCACCTGGGCTTCGTCGGTGGCAGAGATTCGGAGAACCTGGTaGCCCACAAAGTTCTCATTGCCGAAGACTGCTGCCAGCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: FCTWASSVAEIRRTW*PTKFSLPKTAASST Trigger: TGTGCTGCTGGCAGCAGTCTTCGGCAATGAGAACTTTGTGGGGCACCAGGTTCTCCGAATCTCTGCCACCGACGAAGCCCAGGTGCAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS GCA 90 bp | AAGTCCAACTTCAAGTGCTCCAACTCCTCCAGCTCCCTCACTTTCTaGACCTGGGCTTCGTCGGTGGCAGAGATTCGGAGAACCTGGTGC | + |
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Preference number: 5 (lower is better) Translates to: KSNFKCSNSSSSLTF*TWASSVAEIRRTWC Trigger: GCACCAGGTTCTCCGAATCTCTGCCACCGACGAAGCCCAGGTGCAGAAAGTGAGGGAGCTGGAGGAGTTGGAGCACTTGAAGTTGGACTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS GCA 90 bp | AAAGCATCGGTGGACAGAGCCCTGGCCTGGAAGGCGGACATCTGCTaGTTCTCCTCGTCGAGCAGAGACTGCACATCTTCGATCATGATC | + |
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Preference number: 5 (lower is better) Translates to: KASVDRALAWKADIC*FSSSSRDCTSSIMI Trigger: GATCATGATCGAAGATGTGCAGTCTCTGCTCGACGAGGAGAAGCAGCAGATGTCCGCCTTCCAGGCCAGGGCTCTGTCCACCGATGCTTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS TCA 90 bp | CTTGACCTCCACTTCAGAGTTGGGAAACTTGCCACGGTAAGTTTCTaGGCAGGGGTTGCTACTAGCTCCGGGCATCCCAAAGGCAGCATC | + |
|
Preference number: 5 (lower is better) Translates to: LDLHFRVGKLATVSF*AGVATSSGHPKGSI Trigger: GATGCTGCCTTTGGGATGCCCGGAGCTAGTAGCAACCCCTGCTCAGAAACTTACCGTGGCAAGTTTCCCAACTCTGAAGTGGAGGTCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CCA 90 bp | AACTTCAGCACATTGATGGGACGACCTTCAAAGGTGCTGCCGATCTaGATCTTGCTTACAAGCTGTGGGTGCTCTGTAACCAGCAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: NFSTLMGRPSKVLPI*ILLTSCGCSVTSRS Trigger: GGACCTGCTGGTTACAGAGCACCCACAGCTTGTAAGCAAGATCCAGATCGGCAGCACCTTTGAAGGTCGTCCCATCAATGTGCTGAAGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | ACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAAAGCATCCCAGTTCCTGTaGGGGTCCACCCCGACGCAG | + |
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Preference number: 5 (lower is better) Translates to: TLLGCLNGAKEKKGEGNKASQFL*GSTPTQ Trigger: CTGCGTCGGGGTGGACCCCAACAGGAACTGGGATGC...TTTATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | CAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATGTTTCTGAGCAGGGGTaGCTACTAGCTCCGGGCATC | + |
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Preference number: 5 (lower is better) Translates to: QTLLGCLNGAKEKKGEGNVSEQG*LLAPGI Trigger: GATGCCCGGAGCTAGTAGCAACCCCTGCTCAGAAAC...ATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | CAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATCAGTGTCAATCCAGATaGCTGGGCGATTGGTCCCTC | + |
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Preference number: 5 (lower is better) Translates to: QTLLGCLNGAKEKKGEGNQCQSR*LGDWSL Trigger: GAGGGACCAATCGCCCAGCAATCTGGATTGACACTG...ATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | AATCAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGATGGAGATGAAGGCCTaGATGTTCCCGTGGCTCGTC | + |
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Preference number: 5 (lower is better) Translates to: NQTLLGCLNGAKEKKGEGMEMKA*MFPWLV Trigger: GACGAGCCACGGGAACATCAAGGCCTTCATCTCCAT...CCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CCA 90 bp | ACGACCTTCAAAGGTGCTGCCGATCTGGATCTTGCTTACAAGCTGTaGGTGCTCTGTAACCAGCAGGTCCATGAATTCATAGATCTCATC | + |
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Preference number: 5 (lower is better) Translates to: TTFKGAADLDLAYKL*VLCNQQVHEFIDLI Trigger: GATGAGATCTATGAATTCATGGACCTGCTGGTTACAGAGCACCCACAGCTTGTAAGCAAGATCCAGATCGGCAGCACCTTTGAAGGTCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | ACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAAACTGCCGATCTGGATCTaGCTTACAAGCTGTGGGTGC | + |
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Preference number: 5 (lower is better) Translates to: TLLGCLNGAKEKKGEGNKLPIWI*LTSCGC Trigger: GCACCCACAGCTTGTAAGCAAGATCCAGATCGGCAG...TTTATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | CAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAGGAAGATGTCCATGTaGTCAAGAATGGCCGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: QTLLGCLNGAKEKKGEGNRKMSM*SRMAVR Trigger: CCTCACGGCCATTCTTGACAACATGGACATCTTCCT...ATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | CAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATGTGTGTGATCGAGTTTaGCGCCACATGCGATTCGTT | + |
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Preference number: 5 (lower is better) Translates to: QTLLGCLNGAKEKKGEGNVCDRV*RHMRFV Trigger: AACGAATCGCATGTGGCGCAAAACTCGATCACACAC...ATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | AATCAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGCTGTCACAGCAGATTTaGCTAGCTGATCCAGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: NQTLLGCLNGAKEKKGEGLSQQI*LADPAP Trigger: AGGAGCTGGATCAGCTAGCAAAATCTGCTGTGACAG...CCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | AATCAGACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGATGATACTGCCATACTaGAACTTGGTCCCGTGTAGA | + |
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Preference number: 5 (lower is better) Translates to: NQTLLGCLNGAKEKKGEGMILPY*NLVPCR Trigger: TCTACACGGGACCAAGTTCAAGTATGGCAGTATCAT...CCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGTCTGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS GCA 90 bp | ATCTTCGATCATGATCTCATAGCTAATATCATGATATTCCAAGAATaGTTTCACGGACTGGATGGTGGGGAAGGGCACTCGAACATCGAT | + |
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Preference number: 5 (lower is better) Translates to: IFDHDLIANIMIFQE*FHGLDGGEGHSNID Trigger: ATCGATGTTCGAGTGCCCTTCCCCACCATCCAGTCCGTGAAAGCATTCTTGGAATATCATGATATTAGCTATGAGATCATGATCGAAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS-3UTR CAA 90 bp | ACTTTATTGGGTTGCCTAAATGGGGCTAAGGAGAAGAAAGGGGAAGGGAATAAAAGTGCTCCCACTGGCTaGATAGATCGTATCAATGAT | + |
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Preference number: 5 (lower is better) Translates to: TLLGCLNGAKEKKGEGNKSAPTG*IDRIND Trigger: ATCATTGATACGATCTATCAAGCCAGTGGGAGCACT...TTTATTCCCTTCCCCTTTCTTCTCCTTAGCCCCATTTAGGCAACCCAATAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS GCA 72 bp | GTGGACAGAGCCCTGGCCTGGAAGGCGGACATCTGCTaGTTCTCCTCGTCGAGCAGAGACTGCACATCTTCG | + |
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Preference number: 6 (lower is better) Translates to: VDRALAWKADIC*FSSSSRDCTSS Trigger: CGAAGATGTGCAGTCTCTGCTCGACGAGGAGAAGCAGCAGATGTCCGCCTTCCAGGCCAGGGCTCTGTCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS GCA 72 bp | TCGGTGGACAGAGCCCTGGCCTGGAAGGCGGACATCTaGTGCTTCTCCTCGTCGAGCAGAGACTGCACATCT | + |
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Preference number: 6 (lower is better) Translates to: SVDRALAWKADI*CFSSSSRDCTS Trigger: AGATGTGCAGTCTCTGCTCGACGAGGAGAAGCAGCAGATGTCCGCCTTCCAGGCCAGGGCTCTGTCCACCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CCA 72 bp | CCAGCTCCCTCACTTTCTGCACCTGGGCTTCGTCGGTaGCAGAGATTCGGAGAACCTGGTGCCCCACAAAGT | + |
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Preference number: 6 (lower is better) Translates to: PAPSLSAPGLRR*QRFGEPGAPQS Trigger: ACTTTGTGGGGCACCAGGTTCTCCGAATCTCTGCCACCGACGAAGCCCAGGTGCAGAAAGTGAGGGAGCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS GCA 72 bp | TGGGCTTCGTCGGTGGCAGAGATTCGGAGAACCTGGTaGCCCACAAAGTTCTCATTGCCGAAGACTGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: WASSVAEIRRTW*PTKFSLPKTAA Trigger: GGCAGCAGTCTTCGGCAATGAGAACTTTGTGGGGCACCAGGTTCTCCGAATCTCTGCCACCGACGAAGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS GCA 72 bp | CGACGCAGAGGGAGCCCTCGGTGTGTGATCGAGTTTTaGGCCACATGCGATTCGTTTTGTGGGTGTAGACAA | + |
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Preference number: 6 (lower is better) Translates to: RRRGSPRCVIEF*ATCDSFCGCRQ Trigger: TTGTCTACACCCACAAAACGAATCGCATGTGGCGCAAAACTCGATCACACACCGAGGGCTCCCTCTGCGTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CAA 72 bp | GAGATTCGGAGAACCTGGTGCCCCACAAAGTTCTCATaGCCGAAGACTGCTGCCAGCAGCACACTCAGAACC | + |
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Preference number: 6 (lower is better) Translates to: EIRRTWCPTKFS*PKTAASSTLRT Trigger: GGTTCTGAGTGTGCTGCTGGCAGCAGTCTTCGGCAATGAGAACTTTGTGGGGCACCAGGTTCTCCGAATCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS TCA 72 bp | TGTTCCCGTGGCTCGTCACAAAGTCCACGATGGACTTaGCCTCCACTTCAGAGTTGGGAAACTTGCCACGGT | + |
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Preference number: 6 (lower is better) Translates to: CSRGSSQSPRWT*PPLQSWETCHG Trigger: ACCGTGGCAAGTTTCCCAACTCTGAAGTGGAGGTCAAGTCCATCGTGGACTTTGTGACGAGCCACGGGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS GCA 72 bp | AGATTCGGAGAACCTGGTGCCCCACAAAGTTCTCATTaGCGAAGACTGCTGCCAGCAGCACACTCAGAACCA | + |
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Preference number: 6 (lower is better) Translates to: RFGEPGAPQSSH*RRLLPAAHSEP Trigger: TGGTTCTGAGTGTGCTGCTGGCAGCAGTCTTCGGCAATGAGAACTTTGTGGGGCACCAGGTTCTCCGAATCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CAA 72 bp | ATGGGACGACCTTCAAAGGTGCTGCCGATCTGGATCTaGCTTACAAGCTGTGGGTGCTCTGTAACCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: MGRPSKVLPIWI*LTSCGCSVTSR Trigger: CCTGCTGGTTACAGAGCACCCACAGCTTGTAAGCAAGATCCAGATCGGCAGCACCTTTGAAGGTCGTCCCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CAA 90 bp | CAGATTGCTGGGCGATTGGTCCCTCCAGTGCTGAACTTCAGCACATaGATGGGACGACCTTCAAAGGTGCTGCCGATCTGGATCTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: QIAGRLVPPVLNFST*MGRPSKVLPIWILL Trigger: AAGCAAGATCCAGATCGGCAGCACCTTTGAAGGTCGTCCCATCAATGTGCTGAAGTTCAGCACTGGAGGGACCAATCGCCCAGCAATCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CCA 72 bp | CATGATATTCCAAGAATGCTTTCACGGACTGGATGGTaGGGAAGGGCACTCGAACATCGATGGGGAGACCAG | + |
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Preference number: 6 (lower is better) Translates to: HDIPRMLSRTGW*GRALEHRWGDQ Trigger: CTGGTCTCCCCATCGATGTTCGAGTGCCCTTCCCCACCATCCAGTCCGTGAAAGCATTCTTGGAATATCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CAA 72 bp | TCCCGTGTAGAGATGTCAAGGCTGTCACAGCAGATTTaGCTAGCTGATCCAGCTCCTCCTTGTCAGGAGCTG | + |
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Preference number: 6 (lower is better) Translates to: SRVEMSRLSQQI*LADPAPPCQEL Trigger: CAGCTCCTGACAAGGAGGAGCTGGATCAGCTAGCAAAATCTGCTGTGACAGCCTTGACATCTCTACACGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CAA 90 bp | AGCACATTGATGGGACGACCTTCAAAGGTGCTGCCGATCTGGATCTaGCTTACAAGCTGTGGGTGCTCTGTAACCAGCAGGTCCATGAAT | + |
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Preference number: 6 (lower is better) Translates to: STLMGRPSKVLPIWI*LTSCGCSVTSRSMN Trigger: ATTCATGGACCTGCTGGTTACAGAGCACCCACAGCTTGTAAGCAAGATCCAGATCGGCAGCACCTTTGAAGGTCGTCCCATCAATGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CCA 72 bp | ACATTGATGGGACGACCTTCAAAGGTGCTGCCGATCTaGATCTTGCTTACAAGCTGTGGGTGCTCTGTAACC | + |
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Preference number: 6 (lower is better) Translates to: TLMGRPSKVLPI*ILLTSCGCSVT Trigger: GGTTACAGAGCACCCACAGCTTGTAAGCAAGATCCAGATCGGCAGCACCTTTGAAGGTCGTCCCATCAATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS TCA 72 bp | AGAGATGTCAAGGCTGTCACAGCAGATTTTGCTAGCTaGTCCAGCTCCTCCTTGTCAGGAGCTGGTTCTGAT | + |
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Preference number: 6 (lower is better) Translates to: RDVKAVTADFAS*SSSSLSGAGSD Trigger: ATCAGAACCAGCTCCTGACAAGGAGGAGCTGGATCAGCTAGCAAAATCTGCTGTGACAGCCTTGACATCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CCA 72 bp | AAAGGTGCTGCCGATCTGGATCTTGCTTACAAGCTGTaGGTGCTCTGTAACCAGCAGGTCCATGAATTCATA | + |
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Preference number: 6 (lower is better) Translates to: KGAADLDLAYKL*VLCNQQVHEFI Trigger: TATGAATTCATGGACCTGCTGGTTACAGAGCACCCACAGCTTGTAAGCAAGATCCAGATCGGCAGCACCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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| CDS CAA 72 bp | CTGGCTGTAGGTCCAGTCAATAGTGCTCCCACTGGCTaGATAGATCGTATCAATGATACTGCCATACTTGAA | + |
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Preference number: 6 (lower is better) Translates to: LAVGPVNSAPTG*IDRINDTAILE Trigger: TTCAAGTATGGCAGTATCATTGATACGATCTATCAAGCCAGTGGGAGCACTATTGACTGGACCTACAGCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031806.10 |
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