Pregenerated sensors for COX8C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043319Ensembl transcript IDs: ENSMUST00000053611.5
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | GTCAGAGGAGGTTCAAACAGGCACTTTTTCCCATTTAAAGGAGCCATGCCGTGCGGCTTTCTGAGTGGCTaGGGCGGCCTGGGTGGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: VRGGSNRHFFPFKGAMPCGFLSG*GGLGGQ Trigger: CTGGCCACCCAGGCCGCCTCAGCCACTCAGAAAGCC...GCACGGCATGGCTCCTTTAAATGGGAAAAAGTGCCTGTTTGAACCTCCTCTGAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053611.5 |
||
| CDS-3UTR CCA 90 bp | CAAACAGGCACTTTTTCCCATTTAAAGGAGCCATGCCGTGCTGCTCCTGGACATGTGGCTGAGGCGGCCTaGGTGGCCAGGCTTCGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: QTGTFSHLKEPCRAAPGHVAEAA*VARLRE Trigger: TTCTCGAAGCCTGGCCACCCAGGCCGCCTCAGCCAC...ATGTCCAGGAGCAGCACGGCATGGCTCCTTTAAATGGGAAAAAGTGCCTGTTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053611.5 |
||
| CDS-3UTR CCA 90 bp | GTCGTCCATATGATGCACAGTCCAAAAACAAACCGAAGTGTAGAACATCACAGATGTGGGCTTTCTGAGTaGCTGAGGCGGCCTGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: VVHMMHSPKTNRSVEHHRCGLSE*LRRPGW Trigger: CCACCCAGGCCGCCTCAGCCACTCAGAAAGCCCACA...TCTGTGATGTTCTACACTTCGGTTTGTTTTTGGACTGTGCATCATATGGACGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053611.5 |
||
| CDS-3UTR TCA 90 bp | GTCCATATGATGCACAGTCCAAAAACAAACCGAAGTGTAGAACATCACAGACAGTTTTTGTGGGCTTTCTaGGTGGCTGAGGCGGCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: VHMMHSPKTNRSVEHHRQFLWAF*VAEAAW Trigger: CCAGGCCGCCTCAGCCACTCAGAAAGCCCACAAAAA...CTGTCTGTGATGTTCTACACTTCGGTTTGTTTTTGGACTGTGCATCATATGGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053611.5 |
||