Pregenerated sensors for COX8A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035885

Ensembl transcript IDs: ENSMUST00000039758.6, ENSMUST00000237087.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	GGAAGACTGCTCCCTTCACTCCCGCTTCTTGTAGCTCTCCAGGTGTaGCAGGACCCAGCCCGCAGGCAGAAGACAACACACGAAGCAGGA	+
Preference number: 1 (lower is better) Translates to: GRLLPSLPLLVALQV*QDPARRQKTTHEAG Trigger: TCCTGCTTCGTGTGTTGTCTTCTGCCTGCGGGCTGGGTCCTGTCACACCTGGAGAGCTACAAGAAGCGGGAGTGAAGGGAGCAGTCTTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237087.2
3UTR CCA 90 bp	CCAGCCAGGAATGCAGGCAACATGATCAAGGTGGGCTGGCAAAAGTaGTCTAGTCAAAGGATGAGGGAAGACTGCTCCCTTCACTCCCGC	+
Preference number: 1 (lower is better) Translates to: PARNAGNMIKVGWQK*SSQRMREDCSLHSR Trigger: GCGGGAGTGAAGGGAGCAGTCTTCCCTCATCCTTTGACTAGACCACTTTTGCCAGCCCACCTTGATCATGTTGCCTGCATTCCTGGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237087.2
3UTR-3UTR TCA 90 bp	ATGATCCCGGGGAAGGCCAGCCAGGAATGCAGGCAACATGATCAAGGTGGGCTGGGAATGCAGGCAACATaGTCAAGGTGGGCTGGCAAA	+
Preference number: 2 (lower is better) Translates to: MIPGKASQECRQHDQGGLGMQAT*SRWAGK Trigger: TTTGCCAGCCCACCTTGATCATGTTGCCTGCATTCC...CAGCCCACCTTGATCATGTTGCCTGCATTCCTGGCTGGCCTTCCCCGGGATCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039758.6 ENSMUST00000237087.2
3UTR-3UTR GCA 90 bp	CCAAGCAGAGCCAATACATGTGGTCCCAGTTGTCACCATGGAGACATCGAGAGGGGACGGGATGTCAGATaGGTTGGAGCTGGAGTTACA	+
Preference number: 2 (lower is better) Translates to: PSRANTCGPSCHHGDIERGRDVR*VGAGVT Trigger: TGTAACTCCAGCTCCAACGCATCTGACATCCCGTCC...CCTCTCGATGTCTCCATGGTGACAACTGGGACCACATGTATTGGCTCTGCTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237087.2
3UTR-3UTR GCA 90 bp	CATGTGGTCCCAGTTGTCACCATGGAGACATCGAGAGGTCATGATTGCAGAAGAAAGGCCAGCCAGGAATaGAGGCAACATGATCAAGGT	+
Preference number: 2 (lower is better) Translates to: HVVPVVTMETSRGHDCRRKASQE*RQHDQG Trigger: ACCTTGATCATGTTGCCTGCATTCCTGGCTGGCCTT...TCTTCTGCAATCATGACCTCTCGATGTCTCCATGGTGACAACTGGGACCACATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039758.6 ENSMUST00000237087.2
3UTR-3UTR TCA 90 bp	TTGTCACCATGGAGACATCGAGAGGTCATGATTGCAGAAGAGGTGACTGGAATTGGAATGCAGGCAACATaGTCAAGGTGGGCTGGCAAA	+
Preference number: 2 (lower is better) Translates to: LSPWRHREVMIAEEVTGIGMQAT*SRWAGK Trigger: TTTGCCAGCCCACCTTGATCATGTTGCCTGCATTCC...AATTCCAGTCACCTCTTCTGCAATCATGACCTCTCGATGTCTCCATGGTGACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039758.6 ENSMUST00000237087.2
3UTR-3UTR GCA 90 bp	CCAATACATGTGGTCCCAGTTGTCACCATGGAGACATCGAGAGGTCATGATTGCTCGAGAGGTCATGATTaGAGAAGAGGTGACTGGAAT	+
Preference number: 2 (lower is better) Translates to: PIHVVPVVTMETSRGHDCSRGHD*RRGDWN Trigger: ATTCCAGTCACCTCTTCTGCAATCATGACCTCTCGA...GCAATCATGACCTCTCGATGTCTCCATGGTGACAACTGGGACCACATGTATTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039758.6 ENSMUST00000237087.2
3UTR TCA 72 bp	CTCCCTTCACTCCCGCTTCTTGTAGCTCTCCAGGTGTaGCAGGACCCAGCCCGCAGGCAGAAGACAACACAC	+
Preference number: 3 (lower is better) Translates to: LPSLPLLVALQV*QDPARRQKTTH Trigger: GTGTGTTGTCTTCTGCCTGCGGGCTGGGTCCTGTCACACCTGGAGAGCTACAAGAAGCGGGAGTGAAGGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237087.2
3UTR TCA 72 bp	GATCCCGGGGAAGGCCAGCCAGGAATGCAGGCAACATaGTCAAGGTGGGCTGGCAAAAGTGGTCTAGTCAAA	+
Preference number: 3 (lower is better) Translates to: DPGEGQPGMQAT*SRWAGKSGLVK Trigger: TTTGACTAGACCACTTTTGCCAGCCCACCTTGATCATGTTGCCTGCATTCCTGGCTGGCCTTCCCCGGGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000039758.6 ENSMUST00000237087.2
3UTR CCA 72 bp	CCAGCCAGGAATGCAGGCAACATGATCAAGGTGGGCTaGCAAAAGTGGTCTAGTCAAAGGATGAGGGAAGAC	+
Preference number: 3 (lower is better) Translates to: PARNAGNMIKVG*QKWSSQRMRED Trigger: GTCTTCCCTCATCCTTTGACTAGACCACTTTTGCCAGCCCACCTTGATCATGTTGCCTGCATTCCTGGCTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039758.6 ENSMUST00000237087.2
3UTR CCA 72 bp	AATGCAGGCAACATGATCAAGGTGGGCTGGCAAAAGTaGTCTAGTCAAAGGATGAGGGAAGACTGCTCCCTT	+
Preference number: 3 (lower is better) Translates to: NAGNMIKVGWQK*SSQRMREDCSL Trigger: AAGGGAGCAGTCTTCCCTCATCCTTTGACTAGACCACTTTTGCCAGCCCACCTTGATCATGTTGCCTGCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237087.2
CDS-3UTR TCA 90 bp	ATGATCCCGGGGAAGGCCAGCCAGGAATGCAGGCAACATGATCAAGGTGGGCTGGTAGCTCTCCAGGTGTaGCAGGACCCAGCCCGCAGG	+
Preference number: 4 (lower is better) Translates to: MIPGKASQECRQHDQGGLVALQV*QDPARR Trigger: CCTGCGGGCTGGGTCCTGTCACACCTGGAGAGCTAC...CAGCCCACCTTGATCATGTTGCCTGCATTCCTGGCTGGCCTTCCCCGGGATCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039758.6
CDS TCA 90 bp	GCTGCTCCCGCGCCGGCTTCGAGTGGACCTGAGCCCGCGGCACCATaGGCCGCCGGGCCGAGCCGGTCAGGCTCCTCAGCAGCAGTGGCG	+
Preference number: 5 (lower is better) Translates to: AAPAPASSGPEPAAP*AAGPSRSGSSAAVA Trigger: CGCCACTGCTGCTGAGGAGCCTGACCGGCTCGGCCCGGCGGCTCATGGTGCCGCGGGCTCAGGTCCACTCGAAGCCGGCGCGGGAGCAGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039758.6 ENSMUST00000237087.2