Pregenerated sensors for COX7B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031231Ensembl transcript IDs: ENSMUST00000033582.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTGGGTTTGGTGACAGTCCAGTCTCTAAGCAGAAGGGAGCTAATGGCAATTCCATACAGCTTAAATAAATaGGAAGTCACCATGCTTGGG | + |
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Preference number: 2 (lower is better) Translates to: LGLVTVQSLSRRELMAIPYSLNK*EVTMLG Trigger: CCCAAGCATGGTGACTTCTCATTTATTTAAGCTGTA...TGGAATTGCCATTAGCTCCCTTCTGCTTAGAGACTGGACTGTCACCAAACCCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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| 3UTR-3UTR TCA 90 bp | GCACCTATTTCAGATGAATATGCCATACAGTGTAAGGAGGTGGTAGTCTTTAGCAACCTATATGGCCAATaGCCCAGTGGGCTCCTAAAA | + |
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Preference number: 2 (lower is better) Translates to: APISDEYAIQCKEVVVFSNLYGQ*PSGLLK Trigger: TTTTAGGAGCCCACTGGGTCATTGGCCATATAGGTT...GCTAAAGACTACCACCTCCTTACACTGTATGGCATATTCATCTGAAATAGGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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| 3UTR-3UTR CCA 90 bp | GGGTTTGGTGACAGTCCAGTCTCTAAGCAGAAGGGAGCTAATGGCAATTCCAAAAGAAGTCACCATGCTTaGGCTTCATTTACAAAGGAA | + |
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Preference number: 2 (lower is better) Translates to: GFGDSPVSKQKGANGNSKRSHHA*ASFTKE Trigger: TTCCTTTGTAAATGAAGCCCAAGCATGGTGACTTCT...TTTGGAATTGCCATTAGCTCCCTTCTGCTTAGAGACTGGACTGTCACCAAACCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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| 3UTR-3UTR GCA 90 bp | GGGTTTGGTGACAGTCCAGTCTCTAAGCAGAAGGGAGCTAATGGCAATTCCAAACCTAAAACAGCTCTGTaGTTATTTCTTCATTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: GFGDSPVSKQKGANGNSKPKTAL*LFLHSL Trigger: CAGAGAATGAAGAAATAAGCACAGAGCTGTTTTAGG...TTTGGAATTGCCATTAGCTCCCTTCTGCTTAGAGACTGGACTGTCACCAAACCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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| 3UTR-3UTR CAA 90 bp | GACAGTCCAGTCTCTAAGCAGAAGGGAGCTAATGGCAATTCCAAATATAACCACGAGAAGTCACCATGCTaGGGCTTCATTTACAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: DSPVSKQKGANGNSKYNHEKSPC*GFIYKG Trigger: TCCTTTGTAAATGAAGCCCAAGCATGGTGACTTCTC...GTGGTTATATTTGGAATTGCCATTAGCTCCCTTCTGCTTAGAGACTGGACTGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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| 3UTR-3UTR CAA 90 bp | GACAGTCCAGTCTCTAAGCAGAAGGGAGCTAATGGCAATTCCAAATATAACCACGTTTTAAACAATTCCTaGATTATTGTACCAGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: DSPVSKQKGANGNSKYNHVLNNS*IIVPAG Trigger: GCCAGCTGGTACAATAATCAAGGAATTGTTTAAAAC...GTGGTTATATTTGGAATTGCCATTAGCTCCCTTCTGCTTAGAGACTGGACTGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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| CDS-3UTR GCA 90 bp | ATCACTATCCCCTTGGGTTTGGTGACAGTCCAGTCTCTAAGCAGAAGGGAGCTACCACCACTTGCTGAATaGTTCGAACTTGGAGACGGC | + |
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Preference number: 4 (lower is better) Translates to: ITIPLGLVTVQSLSRRELPPLAE*FELGDG Trigger: GCCGTCTCCAAGTTCGAAGCATTCAGCAAGTGGTGG...TAGCTCCCTTCTGCTTAGAGACTGGACTGTCACCAAACCCAAGGGGATAGTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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| 3UTR CAA 72 bp | ACACAGGATCATTACAGGATCACTATCCCCTTGGGTTaGGTGACAGTCCAGTCTCTAAGCAGAAGGGAGCTA | + |
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Preference number: 4 (lower is better) Translates to: TQDHYRITIPLG*VTVQSLSRREL Trigger: TAGCTCCCTTCTGCTTAGAGACTGGACTGTCACCAAACCCAAGGGGATAGTGATCCTGTAATGATCCTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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| CDS-3UTR CCA 90 bp | TCTTCATTCTCTGTAATTTCAGCTTACTATAAAGGTGCCCTCCTGATCATAGATTTCCCATATTTGTCATaGAAACTAGGTGCCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SSFSVISAYYKGALLIIDFPYLS*KLGALF Trigger: GAAGAGGGCACCTAGTTTCCATGACAAATATGGGAA...ATCTATGATCAGGAGGGCACCTTTATAGTAAGCTGAAATTACAGAGAATGAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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| CDS-3UTR CAA 90 bp | TCTTCATTCTCTGTAATTTCAGCTTACTATAAAGGTGCCCTCCTGATCATAGATATAGCATTCCCATATTaGTCATGGAAACTAGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: SSFSVISAYYKGALLIIDIAFPY*SWKLGA Trigger: GGCACCTAGTTTCCATGACAAATATGGGAATGCTAT...ATCTATGATCAGGAGGGCACCTTTATAGTAAGCTGAAATTACAGAGAATGAAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033582.5 |
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