Pregenerated sensors for COX7A2L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024248Ensembl transcript IDs: ENSMUST00000025095.9, ENSMUST00000167741.9
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGACACCGCCTGAGTCCCGAGGCCCTGAGCACGGCTGGCCACGAATaGGCTGGAGAGCAACTTTCCTGCAGAACTCCAGGGAAATCAGGA | + |
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Preference number: 1 (lower is better) Translates to: RHRLSPEALSTAGHE*AGEQLSCRTPGKSG Trigger: TCCTGATTTCCCTGGAGTTCTGCAGGAAAGTTGCTCTCCAGCTCATTCGTGGCCAGCCGTGCTCAGGGCCTCGGGACTCAGGCGGTGTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR CCA 90 bp | ATCATTCCTCTCAATGTTTTCTGCAAGGCGGAGCAATCCCTAGGGTaGCTAACTCAGCCCTCACTTCACCACCTGTCCGCTGGCTTTTGT | + |
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Preference number: 1 (lower is better) Translates to: IIPLNVFCKAEQSLG*LTQPSLHHLSAGFC Trigger: ACAAAAGCCAGCGGACAGGTGGTGAAGTGAGGGCTGAGTTAGCCACCCTAGGGATTGCTCCGCCTTGCAGAAAACATTGAGAGGAATGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR TCA 90 bp | ACAAACACCCATTTCCCTAGGTTCTGGGCGAGACACACAACCCTTTaGAACCAACTGCCCACAAATAGAGGCAGGTTGCTATCATTCCTC | + |
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Preference number: 1 (lower is better) Translates to: TNTHFPRFWARHTTL*NQLPTNRGRLLSFL Trigger: GAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGGTTGTGTGTCTCGCCCAGAACCTAGGGAAATGGGTGTTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR GCA 90 bp | GACACACAACCCTTTGAAACCAACTGCCCACAAATAGAGGCAGGTTaGTATCATTCCTCTCAATGTTTTCTGCAAGGCGGAGCAATCCCT | + |
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Preference number: 1 (lower is better) Translates to: DTQPFETNCPQIEAG*YHSSQCFLQGGAIP Trigger: AGGGATTGCTCCGCCTTGCAGAAAACATTGAGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGGTTGTGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR GCA 90 bp | ATTTCCCTAGGTTCTGGGCGAGACACACAACCCTTTGAAACCAACTaGCCACAAATAGAGGCAGGTTGCTATCATTCCTCTCAATGTTTT | + |
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Preference number: 1 (lower is better) Translates to: ISLGSGRDTQPFETN*PQIEAGCYHSSQCF Trigger: AAAACATTGAGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGGTTGTGTGTCTCGCCCAGAACCTAGGGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR GCA 90 bp | GCGGAGCAATCCCTAGGGTGGCTAACTCAGCCCTCACTTCACCACCTGTCCGCTGGAGAGCAACTTTCCTaGAGAACTCCAGGGAAATCA | + |
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Preference number: 2 (lower is better) Translates to: AEQSLGWLTQPSLHHLSAGEQLS*RTPGKS Trigger: TGATTTCCCTGGAGTTCTGCAGGAAAGTTGCTCTCC...AGCGGACAGGTGGTGAAGTGAGGGCTGAGTTAGCCACCCTAGGGATTGCTCCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR TCA 90 bp | TCTGGGCGAGACACACAACCCTTTGAAACCAACTGCCCACAAATAGAGGCAGGTACGGCTGGCCACGAATaGGCTGGAGAGCAACTTTCC | + |
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Preference number: 2 (lower is better) Translates to: SGRDTQPFETNCPQIEAGTAGHE*AGEQLS Trigger: GGAAAGTTGCTCTCCAGCTCATTCGTGGCCAGCCGT...ACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGGTTGTGTGTCTCGCCCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR CAA 90 bp | AGGGTGGCTAACTCAGCCCTCACTTCACCACCTGTCCGCTGGCTTTaGTTTTCCTTCCTCAATCACACCTACACTCCAAAAGGCTTCCGC | + |
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Preference number: 2 (lower is better) Translates to: RVANSALTSPPVRWL*FSFLNHTYTPKGFR Trigger: GCGGAAGCCTTTTGGAGTGTAGGTGTGATTGAGGAAGGAAAACAAAAGCCAGCGGACAGGTGGTGAAGTGAGGGCTGAGTTAGCCACCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR TCA 90 bp | GCGGAGCAATCCCTAGGGTGGCTAACTCAGCCCTCACTTCACCACCTGTCCGCTGGAAAACATGAAACGTaGGGATTCAAAGGGTTTGTG | + |
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Preference number: 2 (lower is better) Translates to: AEQSLGWLTQPSLHHLSAGKHET*GFKGFV Trigger: CACAAACCCTTTGAATCCTCACGTTTCATGTTTTCC...AGCGGACAGGTGGTGAAGTGAGGGCTGAGTTAGCCACCCTAGGGATTGCTCCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR TCA 90 bp | CAGGTTGCTATCATTCCTCTCAATGTTTTCTGCAAGGCGGAGCAATCCCTAGGGCTGTCAAACCAGCTCTaGCATCTGACAGGCCATCTG | + |
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Preference number: 2 (lower is better) Translates to: QVAIIPLNVFCKAEQSLGLSNQL*HLTGHL Trigger: CAGATGGCCTGTCAGATGTCAGAGCTGGTTTGACAG...CCCTAGGGATTGCTCCGCCTTGCAGAAAACATTGAGAGGAATGATAGCAACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR TCA 90 bp | CCCTTTGAAACCAACTGCCCACAAATAGAGGCAGGTTGCTATCATTCCTCTCAAACGGCTGGCCACGAATaGGCTGGAGAGCAACTTTCC | + |
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Preference number: 2 (lower is better) Translates to: PFETNCPQIEAGCYHSSQTAGHE*AGEQLS Trigger: GGAAAGTTGCTCTCCAGCTCATTCGTGGCCAGCCGT...TTGAGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGCAAGGCGGAGCAATCCCTAGGGTGGCTAACTCAGCCCTCACTTCACCAGGAAAACATGAAACGTaGGGATTCAAAGGGTTTGTG | + |
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Preference number: 2 (lower is better) Translates to: FLQGGAIPRVANSALTSPGKHET*GFKGFV Trigger: CACAAACCCTTTGAATCCTCACGTTTCATGTTTTCC...TGGTGAAGTGAGGGCTGAGTTAGCCACCCTAGGGATTGCTCCGCCTTGCAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR TCA 90 bp | ATCATTCCTCTCAATGTTTTCTGCAAGGCGGAGCAATCCCTAGGGTGGCTAACTCTGTCAAACCAGCTCTaGCATCTGACAGGCCATCTG | + |
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Preference number: 2 (lower is better) Translates to: IIPLNVFCKAEQSLGWLTLSNQL*HLTGHL Trigger: CAGATGGCCTGTCAGATGTCAGAGCTGGTTTGACAG...AGTTAGCCACCCTAGGGATTGCTCCGCCTTGCAGAAAACATTGAGAGGAATGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR GCA 90 bp | TCTGGGCGAGACACACAACCCTTTGAAACCAACTGCCCACAAATAGAGGCAGGTGGAGAGCAACTTTCCTaGAGAACTCCAGGGAAATCA | + |
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Preference number: 2 (lower is better) Translates to: SGRDTQPFETNCPQIEAGGEQLS*RTPGKS Trigger: TGATTTCCCTGGAGTTCTGCAGGAAAGTTGCTCTCC...ACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGGTTGTGTGTCTCGCCCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR CCA 90 bp | ATCATTCCTCTCAATGTTTTCTGCAAGGCGGAGCAATCCCTAGGGTGGCTAACTTCACCACCTGTCCGCTaGCTTTTGTTTTCCTTCCTC | + |
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Preference number: 2 (lower is better) Translates to: IIPLNVFCKAEQSLGWLTSPPVR*LLFSFL Trigger: GAGGAAGGAAAACAAAAGCCAGCGGACAGGTGGTGA...AGTTAGCCACCCTAGGGATTGCTCCGCCTTGCAGAAAACATTGAGAGGAATGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR TCA 90 bp | TTTGAAACCAACTGCCCACAAATAGAGGCAGGTTGCTATCATTCCTCTCAATGTAGAAGCACAGCTCAGTaGTGGCTCAGTGACATTTCC | + |
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Preference number: 2 (lower is better) Translates to: FETNCPQIEAGCYHSSQCRSTAQ*WLSDIS Trigger: GGAAATGTCACTGAGCCATCACTGAGCTGTGCTTCT...ACATTGAGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR CCA 72 bp | TCCCGAGGCCCTGAGCACGGCTGGCCACGAATGAGCTaGAGAGCAACTTTCCTGCAGAACTCCAGGGAAATC | + |
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Preference number: 3 (lower is better) Translates to: SRGPEHGWPRMS*RATFLQNSREI Trigger: GATTTCCCTGGAGTTCTGCAGGAAAGTTGCTCTCCAGCTCATTCGTGGCCAGCCGTGCTCAGGGCCTCGGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR CCA 72 bp | GTGGCTAACTCAGCCCTCACTTCACCACCTGTCCGCTaGCTTTTGTTTTCCTTCCTCAATCACACCTACACT | + |
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Preference number: 3 (lower is better) Translates to: VANSALTSPPVR*LLFSFLNHTYT Trigger: AGTGTAGGTGTGATTGAGGAAGGAAAACAAAAGCCAGCGGACAGGTGGTGAAGTGAGGGCTGAGTTAGCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR TCA 72 bp | CATTTCCCTAGGTTCTGGGCGAGACACACAACCCTTTaGAACCAACTGCCCACAAATAGAGGCAGGTTGCTA | + |
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Preference number: 3 (lower is better) Translates to: HFPRFWARHTTL*NQLPTNRGRLL Trigger: TAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGGTTGTGTGTCTCGCCCAGAACCTAGGGAAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR CAA 90 bp | AAACCAGCTCTGACATCTGACAGGCCATCTGCACACCATAAACAAATCAAAACAGAGGATTCAAAGGGTTaGTGCCACAAAGTGAACCAG | + |
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Preference number: 3 (lower is better) Translates to: KPALTSDRPSAHHKQIKTEDSKG*CHKVNQ Trigger: CTGGTTCACTTTGTGGCACAAACCCTTTGAATCCTC...TGTTTTGATTTGTTTATGGTGTGCAGATGGCCTGTCAGATGTCAGAGCTGGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR-3UTR CAA 90 bp | TTTGAAACCAACTGCCCACAAATAGAGGCAGGTTGCTATCATTCCTCTCAATGTGAGGATTCAAAGGGTTaGTGCCACAAAGTGAACCAG | + |
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Preference number: 3 (lower is better) Translates to: FETNCPQIEAGCYHSSQCEDSKG*CHKVNQ Trigger: CTGGTTCACTTTGTGGCACAAACCCTTTGAATCCTC...ACATTGAGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR TCA 72 bp | TGCAAAATGTTAAGTAGACTATCCAAGTGGAAAACATaGAACGTGAGGATTCAAAGGGTTTGTGCCACAAAG | + |
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Preference number: 3 (lower is better) Translates to: CKMLSRLSKWKT*NVRIQRVCATK Trigger: CTTTGTGGCACAAACCCTTTGAATCCTCACGTTTCATGTTTTCCACTTGGATAGTCTACTTAACATTTTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | GCGGAGCAATCCCTAGGGTGGCTAACTCAGCCCTCACTTCACCACCTGTCCGCTCCAGTGTCAGAGCCATaGTGGTCCGGTAAAGCATTT | + |
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Preference number: 4 (lower is better) Translates to: AEQSLGWLTQPSLHHLSAPVSEP*WSGKAF Trigger: AAATGCTTTACCGGACCACCATGGCTCTGACACTGG...AGCGGACAGGTGGTGAAGTGAGGGCTGAGTTAGCCACCCTAGGGATTGCTCCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | TTTCTGCAAGGCGGAGCAATCCCTAGGGTGGCTAACTCAGCCCTCACTTCACCAGTGTCAGAGCCATGGTaGTCCGGTAAAGCATTTGGT | + |
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Preference number: 4 (lower is better) Translates to: FLQGGAIPRVANSALTSPVSEPW*SGKAFG Trigger: ACCAAATGCTTTACCGGACCACCATGGCTCTGACAC...TGGTGAAGTGAGGGCTGAGTTAGCCACCCTAGGGATTGCTCCGCCTTGCAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | CTCAGCCCTCACTTCACCACCTGTCCGCTGGCTTTTGTTTTCCTTCCTCAATCAAGGCCTCGTTTCAGGTaGAAACCATCAGCCTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: LSPHFTTCPLAFVFLPQSRPRFR*KPSAFW Trigger: CCAGAAGGCTGATGGTTTCCACCTGAAACGAGGCCT...TGATTGAGGAAGGAAAACAAAAGCCAGCGGACAGGTGGTGAAGTGAGGGCTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025095.9 |
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| CDS-3UTR CCA 90 bp | CCCTTTGAAACCAACTGCCCACAAATAGAGGCAGGTTGCTATCATTCCTCTCAACGATCAGGCAGTAGATaGTCCCTCCCAGTGTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: PFETNCPQIEAGCYHSSQRSGSR*SLPVSE Trigger: CTCTGACACTGGGAGGGACCATCTACTGCCTGATCG...TTGAGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR GCA 90 bp | CAGGTTGCTATCATTCCTCTCAATGTTTTCTGCAAGGCGGAGCAATCCCTAGGGGCTCCAGCCAACTTCTaGGTGAAACTGCTAAACTTG | + |
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Preference number: 4 (lower is better) Translates to: QVAIIPLNVFCKAEQSLGAPANF*VKLLNL Trigger: CAAGTTTAGCAGTTTCACGCAGAAGTTGGCTGGAGC...CCCTAGGGATTGCTCCGCCTTGCAGAAAACATTGAGAGGAATGATAGCAACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | CAGGTTGCTATCATTCCTCTCAATGTTTTCTGCAAGGCGGAGCAATCCCTAGGGCATATGCTGTCACACTaGAGGTCAGTTTGGTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: QVAIIPLNVFCKAEQSLGHMLSH*RSVWLV Trigger: CACCAACCAAACTGACCTCCAGTGTGACAGCATATG...CCCTAGGGATTGCTCCGCCTTGCAGAAAACATTGAGAGGAATGATAGCAACCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR CAA 72 bp | AACTCAGCCCTCACTTCACCACCTGTCCGCTGGCTTTaGTTTTCCTTCCTCAATCACACCTACACTCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: NSALTSPPVRWL*FSFLNHTYTPK Trigger: TTTTGGAGTGTAGGTGTGATTGAGGAAGGAAAACAAAAGCCAGCGGACAGGTGGTGAAGTGAGGGCTGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR GCA 90 bp | ATCATTCCTCTCAATGTTTTCTGCAAGGCGGAGCAATCCCTAGGGTGGCTAACTGCTCCAGCCAACTTCTaGGTGAAACTGCTAAACTTG | + |
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Preference number: 4 (lower is better) Translates to: IIPLNVFCKAEQSLGWLTAPANF*VKLLNL Trigger: CAAGTTTAGCAGTTTCACGCAGAAGTTGGCTGGAGC...AGTTAGCCACCCTAGGGATTGCTCCGCCTTGCAGAAAACATTGAGAGGAATGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | CCCTTTGAAACCAACTGCCCACAAATAGAGGCAGGTTGCTATCATTCCTCTCAAGTGTCAGAGCCATGGTaGTCCGGTAAAGCATTTGGT | + |
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Preference number: 4 (lower is better) Translates to: PFETNCPQIEAGCYHSSQVSEPW*SGKAFG Trigger: ACCAAATGCTTTACCGGACCACCATGGCTCTGACAC...TTGAGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | TTTGAAACCAACTGCCCACAAATAGAGGCAGGTTGCTATCATTCCTCTCAATGTCGATCAGGCAGTAGATaGTCCCTCCCAGTGTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: FETNCPQIEAGCYHSSQCRSGSR*SLPVSE Trigger: CTCTGACACTGGGAGGGACCATCTACTGCCTGATCG...ACATTGAGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | TTAACTGTCAAACCAGCTCTGACATCTGACAGGCCATCTGCACACCATAAACAACCAGTGTCAGAGCCATaGTGGTCCGGTAAAGCATTT | + |
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Preference number: 4 (lower is better) Translates to: LTVKPALTSDRPSAHHKQPVSEP*WSGKAF Trigger: AAATGCTTTACCGGACCACCATGGCTCTGACACTGG...TTGTTTATGGTGTGCAGATGGCCTGTCAGATGTCAGAGCTGGTTTGACAGTTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| 3UTR CAA 72 bp | CAAGTGGAAAACATGAAACGTGAGGATTCAAAGGGTTaGTGCCACAAAGTGAACCAGTCCTCCACAGGCAAG | + |
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Preference number: 4 (lower is better) Translates to: QVENMKREDSKG*CHKVNQSSTGK Trigger: CTTGCCTGTGGAGGACTGGTTCACTTTGTGGCACAAACCCTTTGAATCCTCACGTTTCATGTTTTCCACTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | TTAACTGTCAAACCAGCTCTGACATCTGACAGGCCATCTGCACACCATAAACAACATATGCTGTCACACTaGAGGTCAGTTTGGTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: LTVKPALTSDRPSAHHKQHMLSH*RSVWLV Trigger: CACCAACCAAACTGACCTCCAGTGTGACAGCATATG...TTGTTTATGGTGTGCAGATGGCCTGTCAGATGTCAGAGCTGGTTTGACAGTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | TTTGAAACCAACTGCCCACAAATAGAGGCAGGTTGCTATCATTCCTCTCAATGTAGGCCTCGTTTCAGGTaGAAACCATCAGCCTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: FETNCPQIEAGCYHSSQCRPRFR*KPSAFC Trigger: ACAGAAGGCTGATGGTTTCCACCTGAAACGAGGCCT...ACATTGAGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167741.9 |
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| CDS-3UTR CCA 90 bp | CAACCCTTTGAAACCAACTGCCCACAAATAGAGGCAGGTTGCTATCATTCCTCTTTAAGAAAAGGAGGCTaGAAAAACTTCTGCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: QPFETNCPQIEAGCYHSSLRKGG*KNFCSS Trigger: AGAGCTGCAGAAGTTTTTCCAGCCTCCTTTTCTTAA...AGAGGAATGATAGCAACCTGCCTCTATTTGTGGGCAGTTGGTTTCAAAGGGTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167741.9 |
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| CDS-3UTR CAA 90 bp | AAACCAGCTCTGACATCTGACAGGCCATCTGCACACCATAAACAAATCAAAACAGGTCCGGTAAAGCATTaGGTCTGGAAGGCCTCGTTT | + |
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Preference number: 5 (lower is better) Translates to: KPALTSDRPSAHHKQIKTGPVKH*VWKASF Trigger: AAACGAGGCCTTCCAGACCAAATGCTTTACCGGACC...TGTTTTGATTTGTTTATGGTGTGCAGATGGCCTGTCAGATGTCAGAGCTGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025095.9 ENSMUST00000167741.9 |
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| CDS TCA 72 bp | TGTACAAAGGTTCCATTATTAGCCAACGGACCAAACTaGAGTAAAGAGTTCTCCTTAAGAAAAGGAGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: CTKVPLLANGPN*SKEFSLRKGGW Trigger: CCAGCCTCCTTTTCTTAAGGAGAACTCTTTACTTCAGTTTGGTCCGTTGGCTAATAATGGAACCTTTGTACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167741.9 |
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