Pregenerated sensors for COX7A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032330

Ensembl transcript IDs: ENSMUST00000034881.8

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR CAA 72 bp	GCTCAGTTACTCATCAGATTCCTGGTCCATCGAGCGTaGATGAAACTGAACCACGTGAAGACTGGGATGACG	+
Preference number: 4 (lower is better) Translates to: AQLLIRFLVHRA*MKLNHVKTGMT Trigger: CGTCATCCCAGTCTTCACGTGGTTCAGTTTCATCAACGCTCGATGGACCAGGAATCTGATGAGTAACTGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034881.8
CDS-3UTR CCA 90 bp	GCTCAGTTACTCATCAGATTCCTGGTCCATCGAGCGTTGATGAAACTGAACCACGCCTTTCAGATGAACTaGCATCCCATTATCCTCCTG	+
Preference number: 4 (lower is better) Translates to: AQLLIRFLVHRALMKLNHAFQMN*HPIILL Trigger: CAGGAGGATAATGGGATGCCAGTTCATCTGAAAGGC...GTGGTTCAGTTTCATCAACGCTCGATGGACCAGGAATCTGATGAGTAACTGAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034881.8
CDS-3UTR TCA 90 bp	TTATTCTCAAGTGAAAAGGGAGACACAAAATGGTTAAGGATTGCTTTATTGGCAGTCCTCTGGGCAATCTaGCGAAGGGCCAGCAGATTC	+
Preference number: 4 (lower is better) Translates to: LFSSEKGDTKWLRIALLAVLWAI*RRASRF Trigger: GAATCTGCTGGCCCTTCGTCAGATTGCCCAGAGGAC...TGCCAATAAAGCAATCCTTAACCATTTTGTGTCTCCCTTTTCACTTGAGAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034881.8
CDS-3UTR TCA 90 bp	TTATTCTCAAGTGAAAAGGGAGACACAAAATGGTTAAGGATTGCTTTATTGGCAGCCCCGCCTTTCAGATaGACTGGCATCCCATTATCC	+
Preference number: 4 (lower is better) Translates to: LFSSEKGDTKWLRIALLAAPPFR*TGIPLS Trigger: GGATAATGGGATGCCAGTTCATCTGAAAGGCGGGGC...TGCCAATAAAGCAATCCTTAACCATTTTGTGTCTCCCTTTTCACTTGAGAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034881.8
CDS-3UTR GCA 90 bp	AGTGAAAAGGGAGACACAAAATGGTTAAGGATTGCTTTATTGGCAGCAGTTAATACCTTGTTTTCAAAATaGCTTCGTGAAGTGGTGCTG	+
Preference number: 4 (lower is better) Translates to: SEKGDTKWLRIALLAAVNTLFSK*LREVVL Trigger: CAGCACCACTTCACGAAGGCATTTTGAAAACAAGGT...ATTAACTGCTGCCAATAAAGCAATCCTTAACCATTTTGTGTCTCCCTTTTCACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000034881.8
CDS-3UTR TCA 90 bp	AGTGAAAAGGGAGACACAAAATGGTTAAGGATTGCTTTATTGGCAGCAGTTAATATCCCATTATCCTCCTaGAACAGCTTTTGTTTCTCT	+
Preference number: 4 (lower is better) Translates to: SEKGDTKWLRIALLAAVNIPLSS*NSFCFS Trigger: AGAGAAACAAAAGCTGTTTCAGGAGGATAATGGGAT...ATTAACTGCTGCCAATAAAGCAATCCTTAACCATTTTGTGTCTCCCTTTTCACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034881.8
CDS-3UTR CAA 90 bp	TCAAGTGAAAAGGGAGACACAAAATGGTTAAGGATTGCTTTATTGGCAGCAGTTCAAGCGTCAGAGCCATaGTGGCTCTGTAGAGGAGGG	+
Preference number: 5 (lower is better) Translates to: SSEKGDTKWLRIALLAAVQASEP*WLCRGG Trigger: CCCTCCTCTACAGAGCCACAATGGCTCTGACGCTTG...AACTGCTGCCAATAAAGCAATCCTTAACCATTTTGTGTCTCCCTTTTCACTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034881.8
CDS-3UTR CAA 90 bp	TCAAGTGAAAAGGGAGACACAAAATGGTTAAGGATTGCTTTATTGGCAGCAGTTTGTTTCTCTGGAACCTaGTTTTCAAAATGCCTTCGT	+
Preference number: 5 (lower is better) Translates to: SSEKGDTKWLRIALLAAVCFSGT*FSKCLR Trigger: ACGAAGGCATTTTGAAAACAAGGTTCCAGAGAAACA...AACTGCTGCCAATAAAGCAATCCTTAACCATTTTGTGTCTCCCTTTTCACTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000034881.8